<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:44:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258562" ref_strand="+" ref_description="SGN-E258562 [cLEG-47-L19]">
      <seq>aaatatttccttcgataacaatcaaataagaaagagcttatatttttgttaattcaatcaattccaaaacaaagtgtcaagatgaatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaacttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5275" stop="7291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5575" g_stop="6323" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6932" g_stop="6991" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="809" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E258562" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5575" e_stop="6323"/>
          <exon e_start="6932" e_stop="6991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCA</genome_strand>
        <mrna_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAACTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258594" ref_strand="+" ref_description="SGN-E258594 [cLEG-47-J20]">
      <seq>aaatatttccttcgataacaatcaaataagaaagagcttatatttttgttaattcaatcaattccaaaacaaagtgtcaagatgaatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccnggaacagtggcattattggctggaatattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5275" stop="6089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5575" g_stop="5789" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E258594" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5575" e_stop="5789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACC-GGAACAGTGGCATTATT-GCTGGAATATTCAT</genome_strand>
        <mrna_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCNGGAACAGTGGCATTATTGGCTGGAATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359238" ref_strand="+" ref_description="SGN-E359238 [cLHT-11-J14]">
      <seq>cagggtgtcaagatgtgttaagtgactagaatgagcctaatttaaattttaaattgtaaaaattttcaaactttattctatatgcgcttcacccgattagcgtatagcgatggtcgctgagtgactaccggaacagtggcattattgctggagtattcatcagctatgagaaaaaatgcaggctcttgtgtcatcaccaactagctgttacatcaattgaacaacaagaagaatatttatgcacaataatcaatatggcacctacaaagattaccccttttcttcttcaccaactaaatcacttggtttttcaagcagccatttgccttttcaatcactaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttatgggtagctttgggttgcttgattgggctgcttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5355" stop="6471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5656" g_stop="6171" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="542" r_length="515" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E359238" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5656" e_stop="6171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAAC-TTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAAC</genome_strand>
        <mrna_strand>A-GAATGAGCCTAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTTATTCTATATGCGCTTCA-CCCGATTAGCGTATAGCGATGGTCGCTGAGTGACTACCGGAACAGTGGCATTATTGCTGGAGTATTCATCAGCTATGAGAAAAAATGCAGGCTCTTGTGTCATCACCAACTAGCTGTTACATCAATTGAACAACAAGAAGAATATTTATGCACAATAATCAATATGGCACCTACAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTGGTTTTTCAAGCAGCCATTTGCCTTTTCAATCACTAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTATGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359116" ref_strand="+" ref_description="SGN-E359116 [cLHT-11-H22]">
      <seq>cagggtgtttagatgttttaagtgactagaatgagcctaaggtaaattttaaattgtaaaaattttcaccactttattctatatgcgcttcacccgattagcgtatagcgatggtcgctgagtgactaccggaacagtggcattattgctggagtattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatggcacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcagccatttgccttttcaatcactaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttttgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttatggggagctttgggttgcttgattgggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5355" stop="6465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5656" g_stop="6165" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="537" r_length="510" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E359116" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5656" e_stop="6165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCA-AACT-TATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGC</genome_strand>
        <mrna_strand>A-GAATGAGCCTAAGGTAAATTTTAAATTGTAAAAATTTTCACCACTTTATTCTATATGCGCTTCA-CCCGATTAGCGTATAGCGATGGTCGCTGAGTGACTACCGGAACAGTGGCATTATTGCTGGAGTATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGGCACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCAGCCATTTGCCTTTTCAATCACTAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTTTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTATGGGGAGCTTTGGGTTGCTTGATTGGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315985" ref_strand="+" ref_description="SGN-E315985 [cTOA-23-E13]">
      <seq>aatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5359" stop="6565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5659" g_stop="6265" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E315985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5659" e_stop="6265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCT</genome_strand>
        <mrna_strand>AATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325144" ref_strand="+" ref_description="SGN-E325144 [cTOC-13-J1]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5422" stop="6587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5722" g_stop="6287" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E325144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5722" e_stop="6287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCT</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342843" ref_strand="+" ref_description="SGN-E342843 [cTOF-7-F8]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5422" stop="6563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5722" g_stop="6263" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E342843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5722" e_stop="6263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAC</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203575" ref_strand="+" ref_description="SGN-E203575 [cLEC-15-C5]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5422" stop="6305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5722" g_stop="6005" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E203575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5722" e_stop="6005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATA</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727037" ref_strand="+" ref_description="SGN-E727037 [LA13CB12]">
      <seq>ggtatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5479" stop="7591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5779" g_stop="6323" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6932" g_stop="7025" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="639" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7104" g_stop="7137" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="673" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7237" g_stop="7291" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="728" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E727037" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5779" e_stop="6323"/>
          <exon e_start="6932" e_stop="7025"/>
          <exon e_start="7104" e_stop="7137"/>
          <exon e_start="7237" e_stop="7291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG</genome_strand>
        <mrna_strand>GGTATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726043" ref_strand="+" ref_description="SGN-E726043 [LA10AE08]">
      <seq>ggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5479" stop="6600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5779" g_stop="6300" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E726043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5779" e_stop="6300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCT</genome_strand>
        <mrna_strand>GGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207332" ref_strand="+" ref_description="SGN-E207332 [cLEC-30-N10]">
      <seq>aataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcccaaaaaaaggggggctattaaatttgccatcccattatgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5574" stop="7294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5874" g_stop="6323" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6932" g_stop="6959" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="478" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E207332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5874" e_stop="6323"/>
          <exon e_start="6932" e_stop="6959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTA</genome_strand>
        <mrna_strand>AATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286772" ref_strand="+" ref_description="SGN-E286772 [cLES-14-L10]">
      <seq>atcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5663" stop="8433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5963" g_stop="6323" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6932" g_stop="7025" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="455" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7104" g_stop="7137" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="489" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7237" g_stop="7291" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="544" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8084" g_stop="8133" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="594" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E286772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5963" e_stop="6323"/>
          <exon e_start="6932" e_stop="7025"/>
          <exon e_start="7104" e_stop="7137"/>
          <exon e_start="7237" e_stop="7291"/>
          <exon e_start="8084" e_stop="8133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGT</genome_strand>
        <mrna_strand>ATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201765" ref_strand="+" ref_description="SGN-E201765 [cLEC-11-M20]">
      <seq>ccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5692" stop="7423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5992" g_stop="6323" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6932" g_stop="7025" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="426" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7104" g_stop="7123" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="446" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E201765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5992" e_stop="6323"/>
          <exon e_start="6932" e_stop="7025"/>
          <exon e_start="7104" e_stop="7123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTC</genome_strand>
        <mrna_strand>CCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693039" ref_strand="+" ref_description="SGN-E693039 [LH_Ea10E13]">
      <seq>tcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggtcaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgtcattcgatatttggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="5915" stop="9044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6214" g_stop="6323" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6932" g_stop="7025" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="204" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7104" g_stop="7137" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="238" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7237" g_stop="7291" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="293" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8084" g_stop="8167" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="377" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8249" g_stop="8536" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="665" r_length="288" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8643" g_stop="8744" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="767" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E693039" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6214" e_stop="6323"/>
          <exon e_start="6932" e_stop="7025"/>
          <exon e_start="7104" e_stop="7137"/>
          <exon e_start="7237" e_stop="7291"/>
          <exon e_start="8084" e_stop="8167"/>
          <exon e_start="8249" e_stop="8536"/>
          <exon e_start="8643" e_stop="8744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGT</genome_strand>
        <mrna_strand>TCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGTCAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGTCATTCGATATTTGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206802" ref_strand="+" ref_description="SGN-E206802 [cLEC-33-A21]">
      <seq>ttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctactcaaggacaatatctattgaagtcggaatgcaaaactcggttcttggagtagttctagccactcagcactttggtaatacacttactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6626" stop="8999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6921" g_stop="7025" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7104" g_stop="7137" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="139" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7237" g_stop="7291" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="194" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8084" g_stop="8167" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="278" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8249" g_stop="8536" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="566" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8643" g_stop="8699" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="623" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E206802" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6921" e_stop="7025"/>
          <exon e_start="7104" e_stop="7137"/>
          <exon e_start="7237" e_stop="7291"/>
          <exon e_start="8084" e_stop="8167"/>
          <exon e_start="8249" e_stop="8536"/>
          <exon e_start="8643" e_stop="8699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCA</genome_strand>
        <mrna_strand>TTCAGTATTCGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTACTCAAGGACAATATCTATTGAAGTCGGAATGCAA..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATACACTTACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733480" ref_strand="+" ref_description="SGN-E733480 [LB10AE07]">
      <seq>gcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcgatatttggcagtgccttggctggcatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaacctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6947" stop="9318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7247" g_stop="7291" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8084" g_stop="8167" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="129" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8249" g_stop="8536" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="417" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8643" g_stop="9028" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="803" r_length="386" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E733480" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7247" e_stop="7291"/>
          <exon e_start="8084" e_stop="8167"/>
          <exon e_start="8249" e_stop="8536"/>
          <exon e_start="8643" e_stop="9028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCA</genome_strand>
        <mrna_strand>GCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAACCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711220" ref_strand="+" ref_description="SGN-E711220 [FB01BD08]">
      <seq>gaggcgttttgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcgatatttggcagtgccttggctggcatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagcaaaacctataaacatcttgatcattggcaggaatttacctgcatctgatatctaattcttgttctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7785" stop="9353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8084" g_stop="8167" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="92" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8249" g_stop="8536" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="380" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8643" g_stop="9055" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="793" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E711220" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8084" e_stop="8167"/>
          <exon e_start="8249" e_stop="8536"/>
          <exon e_start="8643" e_stop="9055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATT</genome_strand>
        <mrna_strand>TTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGCAAAACCTATAAACATCTTGATCATTGGCAGGAATTTACCTGCATCTGATATCTAATTCTTGTTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715612" ref_strand="+" ref_description="SGN-E715612 [FB14DB05]">
      <seq>gttgtagcaactgttgactgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcataactgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagatgatatgtcctcctcaaggacaatatctattgaagtcggaatgcagaactcggttcttggagtatttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcaatatttggcagtgccttggctgacatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcatcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaatttatctgcatctgatatctaattcttgttctgtaaaacaaattcccccaaaaaaaagccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="8039" stop="9353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8339" g_stop="8536" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8643" g_stop="9052" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="609" r_length="410" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E715612" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8339" e_stop="8536"/>
          <exon e_start="8643" e_stop="9052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTAGCAACTGTTG-CTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</genome_strand>
        <mrna_strand>GTTGTAGCAACTGTTGACTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAACTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGATGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG..........................................................................................................AACTCGGTTCTTGGAGTATTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCAATATTTGGCAGTGCCTTGGCTGACATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCATCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282543" ref_strand="+" ref_description="SGN-E282543 [cLER-18-J1]">
      <seq>tttttttttttttttttttaccgaacaagaattagatatcagatgcagataaattcctgccaatgatcaagatgtttataggttttactaccgccaccaccaacaaagtaaaattggttttactacagacagattaatgctgattcgccagacatcactatgaacttcccaaaaaaataaaaagatctccgaattcactgactaccaagcttgatgatcactgcgaaaaactacaatcttatattcagaccatcatagaattgccaacagagtgacttagtcctgcactttatctggaatagaacgcctccatatgccagccaaggcactgccaaatatcgaatggcaaacactagaaacggcacatggtactgcagtaagtggattaccaaagtgctgagtggctagaactactccaagaaccgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="62264" stop="8343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14347" g_stop="14324" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14323" i_stop="9049" i_length="5275">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9048" g_stop="8643" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="429" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E282543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14347" e_stop="14324"/>
          <exon e_start="9048" e_stop="8643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTTCTTTGTGTTTAGCTTATATACTTCATCATCTATCAACATCTAAAAACTTAACCTGTTAGATAAAATACACTCAACAAACGCACCTGAGGTAAAGGAAGGATGACAAAGAGATCCAAAAAGAAACCCTTCTTGGATTTCAAGTATCGTAAGGCCACAAAACATCGAAAACTCTGGTCTTGATGTAGTCGTGGACCTCGACTACTACTAGTAATTTGATTTTCATCCATTTTTTCATTGTAAGGACGTAATTTATGCATCTTGAATCGTATCCACATGTTCCATAAATGCATCGCATCGGTCATGCATCGAAGAACGGTGACCGTTACCGCAAACCAACCATCGATAAAAAGGCACATGCAAGTCTCGCTGATAGAGAGAGAGTAGAAAAAGAGAGGATCCACAAATAGCCCCGTGGCACATACTAATAAAAATACTCGATTCCATTCTTGAACCCAAGGCGCTCTAGGGTCTATGACTTTCCACGAAAAGAAGTCTGTCAATCCTCCTCCTCGACTACGACTACTACAAATGTTGTAGTCATTTGAATTATCATCTTCTTTTTCCTCCTCTTCTATGTTATCTTGCTCATCCTCGTCCTCGTCCATGTCATCGTCACTTCGATCACTATAATTATTTGATAGTTCAAGTTCATGATGACTAGCCATTAATTTTTTTTTTTGTGCTAGTTTTTTTCTTTTATGGATTTGGGATATGGAGATAAAAAAAAATGAAGAGAATATATGCACTGATTTTTTTTGGAGTTAGGAGGGGATTATATAATTTGAAACAATTAATAATAACAAGAAGAGGACATAAATAATTGTAGATATGGGAAGAGCATAACCTGACAATAATGATGGGAACTTCCATTACTGCCCTTATGTAATTACTAGGATATATACCAATATATTAGTTTTAAAAAATGTAATCAAACAAAATTGGTTCTTGAATTTTTTTGAAATTACTACTAATCGTTTTATAATTAAGTAGTTTTATTTTATTTTTGCGGAAGATGAAAAAGCACTTTCTAACGGTGTTTGGTTGGAAATACTATGTTCTTCTAATCAATATAAATGAATTATTAAGATATGATAAATTCCATATTTAAAGACAATAATTAAAAGACAACTTTGTCATTATTACTATTTAGTCTTTCCAAAATCTTCTTAAAAGTATAATACTCATTATTTGAGATTTAAAAATAGTTTAAAATCATATTAAATAAAACTAATTCTTAAAAAAAAAAAAAGTTGATACATTTTTACAGTTTAAGTGATTTATTTATATCGAAATAGAAGGAATATTATATTTACCATCTAAGAGTAGTGATGACTATTTGATGGGGACATTAACATGGGACCAAATAAATATTTTTTTGTAAGCTAATGTATGTAATGTACGCACGCAAGAGCTATTTAACTTTTTGGAGAAAAAAAGGCATACTTTGTGTAACTTTAGTTTGTCATTTAAATCCTTTGTAACTTTTACTTTTCCTCCAAATATCTTTTAATAACTTCAACTTTTCCATTTAATGTCAATTAATTATTCCAGTCCTAATAAAGTGATAATGTAACACTTTGTGTCTCACACTTATTTCTATAACAATGTGTCTCACACTTATTTCTATAACAATTTGAACTTTGGACTACATCATGTATAATCTCTCTTGTTTCCCTCCCCTCCCCTTCACATATATACATAAATGTAATGTTTTATAATTTTTTTATCGTCAAAACGTTATATATATCATTAAAAAAATAAGGTAAAATTATTATTTTTTTCAGTACCAATAAATTATATAACATTTTTTATTTTTTGGTCAGTCACAAAAAGAATAGTACATTTCTATGTTCAGTAACAGTTTAAATATAAAATGCTCATTTTAGTCCTTATGAGATATTTCTTGCCACATAAAATCTATGACCTATTTTAGAGACCAATTTTTTTTTTAATTCAACTTTATACTCAATCTAACTATATCATATAAACTGAAACGGAAGGAACCTTTTTTATATCATGTTAACAATATGGATACTATAAAAATTATTGAGAGTGTTATTATACATACTTTAAATTCAAAAAGTAAAAAAATTGGGGGGTAATTTGGGAATAAGTGAAGAGAGACAAAGAGAAGTTGAGTCGGGCAGGTTGGCAAAGGGGCAAAGGTCATATTCACGAATAAGTTTGAACAACACAGGTTCGTCGCACTTTCCCTCATTTTGTTTGTTTCTTAAGTCAATTATTATACCAAATATATAGATATGAAGAATAAGTTAACCAGAATTAAAATCGAAACAAAACAATAATATTACTGAGTGCGATTTTATTCGTTTTACTAAGATTACATTTTTAGTAACGTATTTTTTCGAACTAGTTTGATTTGAACTTGATCTCTGTGAAAAGATTTTTGAATCTTCTTAAAGTATTTGATTATCTCTTGATCTCTTTATCAATATAATTAAGAATTTATGAGATATTCAAGATACTCTTTAAAGAAATATAATATCTGATCCTTTATATAGGCATATATATAATATTCTTGTAAAGTCTCATAAATTTCAATGTCTAGGTTAAATCTAATGGTCTGAAATGCCAGATATGTCAAATGTATAAAATATCTCTTAATTATATGATTTAAATAGGAAAAATTACGCAGATAAACAAATAACTACTAGTTAATTAGCTAACACAACTGTAGTTTGAATTAACTATCACTTGCAGCCTTTCAGCTATAATTATGTGCGTCTCTCTCCTATCTTATGCATATACATATACAATTATATGACGAATATACAAATACAATTCGCAACTCTCCACTGTCTGCTCTCCCTTGCTTGTTTCTCTCCTTCTTCTCCCAATATCGCTCGTCTCTCTCCTTTCTTCTCCCAATCTCGCTCTCTTAATATATAAATATATATGTATATCAGCTACATGTATACAATTATCTGATACCTCTCTCAATTATATGTCCTCTCTCGCTCGCCTCGTTTATCGGTAAACAAATAATTTTTTATAAAAAGAACACATCTTATATCATGAATAGAATCACTTTCTTAAACCAAAAATAAAGAATAATAGAAGTACTTACTAAGGAAACATAATTTACGTATAGAGCCGTCATGAACTTTAACACATCATCTCAATGTTCCCATATTTCTTATCCTTCATTCTTGTATGAAATATATAAAAATATTATCTGTTTAAATTTTTTTAATTGATTAAATAAAAATAAATATTTAATTTTAATATAAATGAATAAATAAAATTGGAAGAGAAGTGTATCAAATAATCACGAGTTTAATGTAACTATATTTGTCTACTTCCATTTGTTTGTTTCACCTCACAAATATCAAGAATTTAATCAAAAGCTCCTTTTGTTTCTCAAAATGAATTCTCATGTGACATAAAGTTTGAGATGAGTTGCAGTAGGTCCTAAAGAAACTAAAAATAAAATAAAATTATACACGTGATTTTGATACCTATGGTCCAAAGCAATTAGTACTTATTTTTTTACCTCTTCTTATAAGCTCATGTCTTTTTGTTTTTTTCGGTAATCTGAAGTCATAATCTTAGGATTTGAAGAAAAAAGGCTTATCATGGAGCAATTTTTCCTGGTCACCGTTTTTGAACTTGTTTTGACATTTAACCCTTTGCGGTATTGGGGTGATTCAGTGGTTTGGGCTTAAAATTTTCATGTCGGAGGTGTCAAGTTTGAAATTTCTTGCTAGCGGTGTTTCTTTTGAGTCGAGCTTGTCTCACCAGACTTACTTAGTACGGATTACCTCTCCTGTGTGGTTTGAGGGATATTGCATAGAAGTAAAATTTTACATGTGTGCACCAAAAGGATAGCGACTATGGATTTTCCTTGTCATAATAAAAAGTTATTTAGGTAGAGCAAATTTAAAAGCTAAGATAACAAATAAATTCATTTTTACCCTATTCAAGCAACAAAACTTTTCGATAGAAACCCTGTTATTATACGATGAGTAAGGTGCGGAGCTATACTTTAAACACAGATATGCTATATTCCAACCTCCCTGCTGCTTTGTATAGTCTCATTAGAAGGCAGTACATATTCTAGGAAATCAATTGAACCCTATTTTAACTTAATTCTGCCTCCGGTCCAAACATGTCCTATTTGTGATCCTGGTCCATCTTAACGGAAACATATATATATACCATGCAAGTTTTTTTTTTATGTTCGATATTTATTTTGAAATTCGATTAAATCTAAATTCGCATAAGAAAAATTTTATATTGAGACTCGAGATAAAACACTCTCTAACAAATATATAGTAGTACTTCAATCCTGGTATTTTTCTCCAAGGTTTCTTCTACCTAACACAGTCTAACTAAACAAGGGAGATATAGATGGAGCCTGTTTCAATGTATTTAACTAAATATGGGCGTATCTAGGGTTGAGAGTGTTCATCTAAACTTCCTTAATAAAAACATACATTATATACATATATATATATATATATATTATAATTTTTATTTTTTCAATATATAGAAAAAGATTTTGAATCCGTTGAACACAAAATTAGAACTCAATGATTTAGGGGGTTTAAAATCCACCTTGAGATTCCAAGTTCAAATCCCAAATGATGAAAATTCTTGATCTGCTACTGAAACGAAACCCAATATTTTGACATAAAACATATATATATATATATATATATATATATATATATATATATATATGAAAAACCACTAAAATTTCAAGAGATAAATGATTTGTTGATACATCTGCAATATGCAACTGTAGAGTGGGGTCTGAGTGTGATGAAATTCAGCAGAGGACCACATTAAGTTATTTTGTATCACACATCTGTTTCACAAGTAGCTTTGCTCATTTTATAATGTATATGCTACTCTTAGGCCTGTGTTAGTCAAATATACATGTAGTCCACTCGTAGCAATTTTAATGACACTCTTGTTATAAATCATAAATTTCAAAAGTTCTATTTTTATGTGAGGATAAAAGTAGTTAAATTTGTAGTAAACGAATGTGACGGAGGCTAACATTATTTGTGGCATATATTAACAGAAATTGTACCCTTTCTTAAACTTTTGCTGTTCCCTGGGATTCTTTCCTGCTAAAGCAAGATTTCTATATTTATTGACTTGCATATGGTCCCTCCTATTTACAGCTCTAAATGGAATATGCTTTGCACGAGAGGCAAATCTACTGTGGGTTATGTGGATTTAACTGAATATCTTGTTTATCGCTCAACTAAATACGTAAATCTGCAGAAATATTTTAAGTTATCCAACACTATCAATACAGAACAAGAATTAGATATCAGATGCAGATAAATTCCTGCCAATGATCAAGATGTTTATAGGTTTTACTACCGCCACCACCAACAAAGTAAAATTGGTTTTACTACAGACAGATTAATGCTGATTCGCCAGACATCACTATGAACTTCCCAAAAAAATAAAAAGATCTCCGAATTCACTGACTACCAAGCTTGATGATCACTGCGAAAAACTACAATCTTATATTCAGACCATCATAGAATTGCCAACAGAGTGACTTAGTCCTGCACTTTATCTGGAATAGAACGCCTCCATATGCCAGCCAAGGCACTGCCAAATATCGAATGGCAAACACTAGAAACGGCACATGGTACTGCAGTAAGTGGATTACCAAAGTGCTGAGTGGCTAGAACTACTCCAAGAACCGAGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTACC-G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAATTAGATATCAGATGCAGATAAATTCCTGCCAATGATCAAGATGTTTATAGGTTTTACTACCGCCACCACCAACAAAGTAAAATTGGTTTTACTACAGACAGATTAATGCTGATTCGCCAGACATCACTATGAACTTCCCAAAAAAATAAAAAGATCTCCGAATTCACTGACTACCAAGCTTGATGATCACTGCGAAAAACTACAATCTTATATTCAGACCATCATAGAATTGCCAACAGAGTGACTTAGTCCTGCACTTTATCTGGAATAGAACGCCTCCATATGCCAGCCAAGGCACTGCCAAATATCGAATGGCAAACACTAGAAACGGCACATGGTACTGCAGTAAGTGGATTACCAAAGTGCTGAGTGGCTAGAACTACTCCAAGAACCGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539481" ref_strand="+" ref_description="SGN-E539481 [TUS-59-E5]">
      <seq>gtttttttttttttttttttacagaacaagaattagatatcagatgcagataaattcctgccaatgatcaagatgtttataggttttactaccgccaccaccaacaaagtaaaattggttttactacagacagattaatgctgattcgccagacatcactatgaacttcccaaaaaaataaaaagatctccgaattcactgactaccaagcttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="62264" stop="8555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9849" g_stop="9826" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9825" i_stop="9049" i_length="777">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9048" g_stop="8855" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="218" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E539481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9849" e_stop="9826"/>
          <exon e_start="9048" e_stop="8855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTATTTTTTCAATATATAGAAAAAGATTTTGAATCCGTTGAACACAAAATTAGAACTCAATGATTTAGGGGGTTTAAAATCCACCTTGAGATTCCAAGTTCAAATCCCAAATGATGAAAATTCTTGATCTGCTACTGAAACGAAACCCAATATTTTGACATAAAACATATATATATATATATATATATATATATATATATATATATATATGAAAAACCACTAAAATTTCAAGAGATAAATGATTTGTTGATACATCTGCAATATGCAACTGTAGAGTGGGGTCTGAGTGTGATGAAATTCAGCAGAGGACCACATTAAGTTATTTTGTATCACACATCTGTTTCACAAGTAGCTTTGCTCATTTTATAATGTATATGCTACTCTTAGGCCTGTGTTAGTCAAATATACATGTAGTCCACTCGTAGCAATTTTAATGACACTCTTGTTATAAATCATAAATTTCAAAAGTTCTATTTTTATGTGAGGATAAAAGTAGTTAAATTTGTAGTAAACGAATGTGACGGAGGCTAACATTATTTGTGGCATATATTAACAGAAATTGTACCCTTTCTTAAACTTTTGCTGTTCCCTGGGATTCTTTCCTGCTAAAGCAAGATTTCTATATTTATTGACTTGCATATGGTCCCTCCTATTTACAGCTCTAAATGGAATATGCTTTGCACGAGAGGCAAATCTACTGTGGGTTATGTGGATTTAACTGAATATCTTGTTTATCGCTCAACTAAATACGTAAATCTGCAGAAATATTTTAAGTTATCCAACACTATCAATACAGAACAAGAATTAGATATCAGATGCAGATAAATTCCTGCCAATGATCAAGATGTTTATAGGTTTTACTACCGCCACCACCAACAAAGTAAAATTGGTTTTACTACAGACAGATTAATGCTGATTCGCCAGACATCACTATGAACTTCCCAAAAAAATAAAAAGATCTCCGAATTCACTGACTACCAAGCTTGATGA</genome_strand>
        <mrna_strand>GTTTTTTTTTTTTTTTTTTTACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAATTAGATATCAGATGCAGATAAATTCCTGCCAATGATCAAGATGTTTATAGGTTTTACTACCGCCACCACCAACAAAGTAAAATTGGTTTTACTACAGACAGATTAATGCTGATTCGCCAGACATCACTATGAACTTCCCAAAAAAATAAAAAGATCTCCGAATTCACTGACTACCAAGCTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330609" ref_strand="+" ref_description="SGN-E330609 [cTOD-8-H21]">
      <seq>ttttttttatctccatatcccaaatccataaaagaaaaaaactagcacaaaaaaaaaattaatggctagtcatcatgaacttgaactatcaaataattatagtgatcgaagtgacgatgacatggacgaggacgaggatgagcaagataacatagaagaggaggaaaaagaagatgataattcaaatgactaccaacatttgtagtagtcgtagtcgaggaggaggattgacagacttcttttcttggaaagtcatagaccctagagcgccttgggttcaagaatggaatcgagtatttttattagtatgtgccacggggctatttgtggatcctctctttttctactctctctctatcaacgagacttgcatgtgcctttttatcgatggttggttcgcggtaacggtcaccgttcttcgatgcatgaccgatgcgatgcatttatggaacatgtggatacgattcaagatgcataaattacgtccttacaatgaaaaaatggatgaaaatcaaattactagtagtagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="13312" stop="14442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13612" g_stop="14142" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E330609" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13612" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTA-CAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</genome_strand>
        <mrna_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCAC-AAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACCAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCTTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAACGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTCGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348509" ref_strand="+" ref_description="SGN-E348509 [cTOF-30-D19]">
      <seq>ttttttttatctccatatcccaaatccataaaagaaaaaaactagcacaaaaaaaaaattaatggctagtcatcatgaacttgaactatcaaataattatagtgatcgaagtgacgatgacatggacgaggacgaggatgagcaagataacatagaagaggaggaaaaagaagatgataattcaaatgactacaacatttgtagtagtcgtagtcgaggaggaggattgacagacttctttttcttggaaagtcatagaccctagagcgccttgggttcaagaatggaatcgagtatttttattagtatgtgccacggggctatttgtggatcctctctttttctactctctctctatcagagagacttgcatgtgcctttttatcgatggttggttcgcggtaacggtcaccgttcttcgatgcatgaccgatgcgatgcatttatggaacatgtggatacgattcaagatgcataaattacgtccttacaatgaaaaaatggatgaaaatcaaattactagtagtagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="13312" stop="14442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13612" g_stop="14142" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E348509" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13612" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTC-TTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</genome_strand>
        <mrna_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCAC-AAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTTCTTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGAGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTCGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311544" ref_strand="+" ref_description="SGN-E311544 [cTOA-6-M9]">
      <seq>taagacgcatgcagaatctctctggatacatttttggtactgtttggtggggaattgctcttaacttgattgcttattttgttgcctcccatgcagtgggagcatgttggtacttgctaggaatccaaagggcagcaaaatgtttgaaacaacagtgtagagttacaaatggttgtagcctaagaatgttggcatgtgaagagaaaatattttatggaacaagtagtttggtgaagcatagaagtagagtcatatggggtgagtccaaaattgcaagatcaacatgtctagcctctgaacacaattttgattatggagtttataaatggactgttcaacttgtcacaaatgagaatcgttttgagaaaatattatttcccatcttctggggtctcatgactctcagtacatttggaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15690" stop="17084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15990" g_stop="16081" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16082" i_stop="16459" i_length="378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16460" g_stop="16773" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="406" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16774" i_stop="16933" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16934" g_stop="16949" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="422" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E311544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15990" e_stop="16081"/>
          <exon e_start="16460" e_stop="16773"/>
          <exon e_start="16934" e_stop="16949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCATGTAAGTACACTACTTTTTCGTTCATCTTTATTTGTTCAGTATATTATTTTTACTTGTCATTTTTAACAAGAAAAAACTTGTTTTTATTACATGTCATTTGTTCTGTTTTATATTTATGCCTTTCAATTTTGGGTAGACATTTAAATTTGTAAAAAGTTGAATGAGTAGATACACATAGATTCCCTACATGACAATTTGTATGAGACGTCATGTGTTTAGTACTTGTTCAACTTTATACAAGTTTTAAGTGAGTAATATCGTTCATATCAAAAGTTAAAGAACAGACATAAATATTAATTAACGTTAAGTTAAAAGACACGTTTTTGTGTTATACCGAGTTGTTACACTCTAAAATTATGAGCATATATATGTATACAGGCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTG</genome_strand>
        <mrna_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG................................................................................................................................................................TACATTTGGAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737626" ref_strand="+" ref_description="SGN-E737626 [LC10CD12]">
      <seq>tcatgactctcagtacatttggaaacttggagagcacaacagattggctggaagatgtattcataatcattgttctcactactggtcttcttcttgtcactatgttgattggtaatatcaaggtattcttgcatgcaacaacatcaaagaaacaagcaatgcaactaaaaatgagaaatgtagaatggtggatgaggagaagaaggttgcctcaaggatacaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgaccgcgtaaaatccttgattttcactaaaggagaaacaataacaagagaaggtgatccagttcaaagaatgttgttcatagtgagaggtcatctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16631" stop="19257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16761" g_stop="16773" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16774" i_stop="16933" i_length="160">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16934" g_stop="17042" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="122" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17043" i_stop="17444" i_length="402">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17445" g_stop="17681" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="359" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17682" i_stop="18632" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18633" g_stop="18719" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="446" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18720" i_stop="18840" i_length="121">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.018" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18841" g_stop="18957" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="563" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E737626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16761" e_stop="16773"/>
          <exon e_start="16934" e_stop="17042"/>
          <exon e_start="17445" e_stop="17681"/>
          <exon e_start="18633" e_stop="18719"/>
          <exon e_start="18841" e_stop="18957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAGGTAACCTTCCTAAACATGAGTTTCAATATAGCTATTCAATTTTTCTTGTATTTATATTTTTATATTTTGAATTTCATAGTGTAGATGCTGACTCTGTTAGTGTAGAGAGCATGTGATGTTATTTGGGATTGTTTGATTGCTGATTATAGTTATGTACGTAGGAATTGATTTAGTTATTTCATCATGTATAAAAGAAAATACATAAATTGACTGAGATCTTATACTACATGTGTTTATTTGTGTAGAATTATAGAACGATGGACAAACATGGTACATGTTATGTTGAATTGTATACCAAGTGCATACGTAAACAATTCACCTCCTAACCAGCAACCAAACAAACGTAAAGGTGTTGTATATGTGGTGATATAATAGTAATTATAATAATGTTGGTGTACGTAGGTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAAC</genome_strand>
        <mrna_strand>TCATGACTCTCAG................................................................................................................................................................TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726408" ref_strand="+" ref_description="SGN-E726408 [LA11CH09]">
      <seq>caatcaatgcaactaaaaatgagaaatgtagaatggtggatgaggagaagaaggttgcctcaaggatacaagcaaagggtcagaaattatgaaaggcatagatttgcagcaacaagaggagttgatgaatatgagatgataagcaaccttcctgagggacttagaagagacatcaaatatcatctttgtttggacttggttagacaggttcctttgtttcaacatatggataatttggtcctggagaacatatgtgaccgcgtaaaatccttgattttcactaaaggagaaacaataacaagagaaggtgatccagttcaaagaatgttgttcatagtgagaggtcatctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggctgactctcacgtcgttgtccttcattcgaccaagacgaccgttgtctcgatcttcttcattaacagaagacagactcaggctatatacagctttgctcacttcaccaaagcctaatcaggacgattttgattttttaaaaagagcaacaaacaaatggaatgttaccttctttctgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17175" stop="19949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17475" g_stop="17681" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17682" i_stop="18632" i_length="951">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18633" g_stop="18719" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="294" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18720" i_stop="18840" i_length="121">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.018" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18841" g_stop="18983" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="437" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18984" i_stop="19233" i_length="250">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19234" g_stop="19649" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="854" r_length="417" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E726408" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17475" e_stop="17681"/>
          <exon e_start="18633" e_stop="18719"/>
          <exon e_start="18841" e_stop="18983"/>
          <exon e_start="19234" e_stop="19649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAGGTAAATTTTTTCTTAGTTTTCTTTTTAGGTCAAATTTTTGTTTTTAAACACTACTTGTTCCAGTTTATATTACTAACTTTCTCTTTTACGAGGAGTCTCAAAAAGAACAACATATTTCTATATTAAGTAATGATTTAATTTTATCTAGACCACAAGTTTCAAAAGTCTATTTCTTTCTTCAACTTTGTATCAAGTCAAATTAACTCAATGAGCCGAAGGGAGTGTGTTTTTGACACTCGGAAAAAAAGCACATTTTTCACTCATTTAGTAACTATGGGGAAATTTTTGGACCAAAATATCGACTGTAAGGACATTTTTGAATCAAAGTATTGGCGGCAAGGACATTTTAGAGTTAAACTATAAAAAGTGAAGAGCCATTTTTGTTCATTTCACATAGTTTATTTTTTACCATTTCACTTAAAATTTAATAATTTTGTTTTACTTTGCTAAATTATATGTCAAATTAAAATTGGACAAACAAGTTAAAATGGAATGAGGATTAGAACTTGGGGTTTTAAGTTCTTGCAGTACAAGTACGTACCTTTTTCTAGAATTTGATTGGTGTATTCTTAGTTTGAAGGGACTGAATAACATAATGGGCCTAAATGTGGGATTGATGATCATTCAATTTTGATTTTATTTAATTCAATCATATTTTGTAACGAAATAATCGTTCGATTTTATCATAATATTTACGGAATTTATTAAATTACTTTTTGTAAATAAAAAAGTCACACAATTGGTATTTTGTTGTTGAGTTGTTGTGATTCTTAGGCGAAGTTGAATAGAATAAGCATTCGAACTTCCTGTGATATTTGTGCTAAGTTATGTTATTTTTGTTTTGTAACTTTGGTGAAATAAAATAAAAATTGAAATCGACTGAGCTTATCTGGGATAGAATCATATAGATGTATTTCCCAAACTTATTATTATTTGCACATATTTTTTCAGGTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACAGTAAGTTCAAAATGTGATGTAAACATTCATATTCCTAATACATGTCACAAATATTTCATAGAATTAGTTTAATGTGCCTACAAACTGATCCAGACACCACACCACGGTTTTTTTCTTAAAGATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGA-TTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</genome_strand>
        <mrna_strand>CAATCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA.........................................................................................................................ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237483" ref_strand="+" ref_description="SGN-E237483 [cLED-19-C6]">
      <seq>catctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18592" stop="19725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18892" g_stop="18983" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18984" i_stop="19233" i_length="250">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19234" g_stop="19425" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="284" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E237483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18892" e_stop="18983"/>
          <exon e_start="19234" e_stop="19425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGC</genome_strand>
        <mrna_strand>CATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727560" ref_strand="+" ref_description="SGN-E727560 [LA15AC02]">
      <seq>cggaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtaagtttaggagtgagagtagttgtttgtatttgggtaattaatttgaaaaacagatctagtaaactagaatggtagtgtacacaaggttaattcactctaggattgatggtcccatcccaataatcactaaaataaaatgataacacctttggcttcccagaatcttgggtaaacaggctttcgtatattttgatgtgttactagcctgaatattttgtgtgttcttcattcattttttccccccaacaggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggctgccgttgctattcagttggcctggaggagatatagacaccggctgactctcacgtcgttgtccttcattcgaccaagacgaccgttgtctcgatcttcttcattaacagaagacagactcaggctatatacagctttgctcacttcaccaaagcctaatcaggacgattttgatttttaaaaagagcaacaaacaaatggaatgttaccttctttctgttatgagataggagcacatccccctccctctatatgtccttcaattatccattcatgtgatatgtagtagtctcttcgtttcaatttatgtgaattcgtggacacccgagttaagaaagaaagaaaaatttgatctacagagtctgtagattttgaggtcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18610" stop="62264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18908" g_stop="19824" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="920" r_length="920" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E727560" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18908" e_stop="19824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATA-TTT-TGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCGAGTTTAAGAAAGAAAAGAAGATTTTGATCTAC--AGTCTGTAGATTTTGAGGTCATGTAGAACATCTCAGATCAA</genome_strand>
        <mrna_strand>CGGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATAATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTACTAGCCTGAATATTTTGTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCCGAGTTAAGAAAG-AAAGAAAAATTTGATCTACAGAGTCTGTAGATTTTGAGGTCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391686" ref_strand="+" ref_description="SGN-E391686 [TUS-27-D20](-)">
      <seq>gaaggtgaaagaaggcacaccgatttatgtacctgagttgtttgatgaacaaaaggataaagtttgtattgagcgtactctaaaggtggtgtttttggaccctgaacgcccttttccagcactggataaaataaaacgtcagctggcccaagctgagggtgcaacagaaggtgagaagaaacctcctgttgacacaggtccgaaagttgtgggagaaggcttaatagtagatgaatggaaagagcggagggagaggtatcttgctcgccaacaagttgaggcagtggattcagtaaagcagtagagagtgtttatgtaagtgcgtctttttccagaatagcaatgtataatcagatatgcactttttattattgcctttctttggattgatggtgtagaaggttaatgcaatgcttcatgtaaagaagaacactgagtggagatttaagattatataagattagaaataattatattcaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="22698" stop="19557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22398" g_stop="22362" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.811"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="0.81"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20487" g_stop="20410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20326" g_stop="20207" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="238" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20206" i_stop="20111" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20110" g_stop="19857" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="492" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E391686" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22398" e_stop="22362"/>
          <exon e_start="20487" e_stop="20410"/>
          <exon e_start="20326" e_stop="20207"/>
          <exon e_start="20110" e_stop="19857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTGAAAGAAGG-A-ACTGAT-TATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGGGTAAGTATCTCCTGTTTGTGTAAATAAATGAATAATTCTAAGTTCCGACTTCCTTCATCCCTCTTACAATGTGTTTCTGCTCACTATGCTTTATAGAAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</genome_strand>
        <mrna_strand>GAAGGTGAAAGAAGGCACACCGATTTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAAAAGGATAAAGTTTGTATTGAGCGTACTCTAAAGGTGGTGTTTTTGGACCCTGAACGCCCTTTTCCA...................................................................................GCACTGGATAAAATAAAACGTCAGCTGGCCCAAGCTGAGGGTGCAACAGAAGGTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG................................................................................................AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTTTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378762" ref_strand="+" ref_description="SGN-E378762 [TUS-27-D20]">
      <seq>tgccgtcgaccaccgcacgcgacagcagtccaacggccaactctcgtggctttgccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaagtttcaaactactgcaccaaagagctgctacatgcgacctccgggaggtattcttgtacctggggaaagtttgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagaaggaactgattatgtacctgagttgtttgatgaacaaaaggataaagtctgtattgagcgtactctaaaggtggtgttcttggaccctgaacgcccttctccagcactggataaactaaaacgtcagctggcccaagctgaggctgcaacagaagctgagaagaaacctcctgttgacacaggtccgaaagttgtgggagaaggcttaatagtagatgaatggaaagagcggagggagaggtatcttgctcgccaacaagttgaggcagtggattcagtaaagcagtagagagtgtttatgtaagtgcgtctttttccagaatagcaatgtataatcagatatgcacttcttattattgcctttctttggattgatggtgtagaaggttaatgcaatgcttcatgtaaagaagacactgagtggagatttaagattatataagattagaaaatattatattcaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24156" stop="19557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23856" g_stop="23729" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="199" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="281" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22362" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="400" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20487" g_stop="20410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="478" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20326" g_stop="20207" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="598" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20206" i_stop="20111" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20110" g_stop="19859" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="849" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E378762" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23856" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22362"/>
          <exon e_start="20487" e_stop="20410"/>
          <exon e_start="20326" e_stop="20207"/>
          <exon e_start="20110" e_stop="19859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGGGTAAGTATCTCCTGTTTGTGTAAATAAATGAATAATTCTAAGTTCCGACTTCCTTCATCCCTCTTACAATGTGTTTCTGCTCACTATGCTTTATAGAAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATAC</genome_strand>
        <mrna_strand>TGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCCAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA...................................................................................GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG................................................................................................AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAG-ACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAAATATTATATTCAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342285" ref_strand="+" ref_description="SGN-E342285 [cTOF-8-E16]">
      <seq>gctgccgtcgaccaccgcacgcgacagcagtccaacggcaaactctcgtggctttgccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaagtttcaaactactgcaccaaagagctgctacatgcgacctccgggaggtattcttgtacctggggaaagtttgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagaaggaactgattatgtacctgagttgtttgatgaacaaaaggataaagtctgtattgagcgtactctaaaggtggtgttcttggaccctgaacgcccttctccagcactggataaactaaaacgtcagctggcccaagctgaggctgcaacagaagctgagaagaaacctcctgttgacacaggtccgaaagttgtgggagaaggcttaatagtagatgaatggaaagagncggaggagaggtatcttgctcgccaacaagttgaggcagtggattcagtaaagcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24158" stop="19746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23858" g_stop="23729" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="201" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="283" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22362" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="402" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20487" g_stop="20410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="480" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20326" g_stop="20207" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="600" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20206" i_stop="20111" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20110" g_stop="20046" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="665" r_length="65" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E342285" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23858" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22362"/>
          <exon e_start="20487" e_stop="20410"/>
          <exon e_start="20326" e_stop="20207"/>
          <exon e_start="20110" e_stop="20046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGGGTAAGTATCTCCTGTTTGTGTAAATAAATGAATAATTCTAAGTTCCGACTTCCTTCATCCCTCTTACAATGTGTTTCTGCTCACTATGCTTTATAGAAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTA</genome_strand>
        <mrna_strand>GCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA...................................................................................GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG................................................................................................AAAGAGNCGGAGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274549" ref_strand="+" ref_description="SGN-E274549 [cLEN-11-H16]">
      <seq>atggctgtcgtcgaccaccgtacgcgacagccgcccaacggcaaactctcgtggctttgccccttcactaaatccatatctccggctaagcgtcggctccggctcgatccttctaacaatctctactttccatatgaacctgaaaagcaggcgaatagtgccataacgattaagaacacaagcaaatcttttgtagcattcaaggttcaaactactgcaccaaagagctgctacatgcgacctgcgggaggtattcttgtacctggggaaagtgtgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagacggaactgattatgtacctgagttgtttgatgaacaacacgataaagtctgtattgagcgtactctaaaggtggtgtacctggaccctgaacgcccttctccagcactggataaactaaaacgtcagctggcccaagctgaggctgcaacagacgctgagaagaaacctcctgctgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24161" stop="19950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23861" g_stop="23729" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="204" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="286" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22362" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="405" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20487" g_stop="20410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="483" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20326" g_stop="20250" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="560" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E274549" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23861" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22362"/>
          <exon e_start="20487" e_stop="20410"/>
          <exon e_start="20326" e_stop="20250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACAC</genome_strand>
        <mrna_strand>ATGGCTGTCGTCGACCACCGTACGCGACAGCCGCCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATCTCCGGCTAAGCGTCGGCTCCGGCTCGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGAAAAGCAGGCGAATAGTGCCATAACGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................GTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTGCGGGAGGTATTCTTGTACCTGGGGAAAGTGTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGACGGAACTGATTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAACACGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTACCTGGACCCTGAACGCCCTTCTCCA...................................................................................GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGACGCTGAGAAGAAACCTCCTGCTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204074" ref_strand="+" ref_description="SGN-E204074 [cLEC-27-E19]">
      <seq>tttgtttatggcctgaaattgatagttatcatcggaataccaccatggctgccgtcgaccaccgcacgcgacagcagtccaacggcaaactctcgtggctttgccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaagtttcaaactactgcaccaaagagctgctacatgcgacctccgggaggtattcttgtacctggggaaagtttgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagaaggaactgattatgtacctgagttgtttgatgaacaaaaggataaagtctgtattgagcgtactctaaaggtggtgttcttggaccctgaacgcccttctccagcactggataaactaaaacgtcagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24205" stop="19999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23905" g_stop="23729" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="248" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="330" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22362" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="449" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20487" g_stop="20410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="527" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20326" g_stop="20299" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="555" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E204074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23905" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22362"/>
          <exon e_start="20487" e_stop="20410"/>
          <exon e_start="20326" e_stop="20299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGG</genome_strand>
        <mrna_strand>TTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA...................................................................................GCACTGGATAAACTAAAACGTCAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269250" ref_strand="+" ref_description="SGN-E269250 [cLEI-16-N24]">
      <seq>tgccgtcgaccaccgcacgcgacagcagtccaacggcaaactctcgtggctgggccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaagtttcaaactactgcaccaaagagctgctacatgcgacctccgggaggtattcttgtacctggggaaagtttgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagaaggaactgattatgtacctgagttgtttgatgaacaaaaggataaagtctgtattgagcgtactctaaaggtggtgttcttggaccctgaacgcccttctccagcactggataaactaaaacgtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24156" stop="20002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23856" g_stop="23729" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="199" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="281" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22362" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="400" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20487" g_stop="20410" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="478" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20326" g_stop="20302" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="503" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E269250" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23856" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22362"/>
          <exon e_start="20487" e_stop="20410"/>
          <exon e_start="20326" e_stop="20302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGC</genome_strand>
        <mrna_strand>TGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTGGGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA...................................................................................GCACTGGATAAACTAAAACGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298167" ref_strand="+" ref_description="SGN-E298167 [cLEW-9-M4]">
      <seq>taaattaaagtcaacttttagcttcactaaacgacaatattcattcccctaaatttgtttatggcctgaaattgatagttatcatcggaataccaccatggctgccgtcgaccaccgcacgcgacagcagtccaacggcaaactctcgtggctttgccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaagtttcaaactactgcaccaaagagctgctacatgcgacctccgggaggtattcttgtacctggggaaagtttgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagaaggaactgattatgtacctgagttgtttgatgaacaaaaggataaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24258" stop="20163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23958" g_stop="23729" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="301" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="383" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22362" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="502" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20487" g_stop="20463" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="527" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E298167" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23958" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22362"/>
          <exon e_start="20487" e_stop="20463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTAAAGTCAACTTTTAGCTTCACTAAACGACAATATTCATTCCCCTAAATTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTGGTAAGTAAATCAAACTTCTAGGCCTTGAAAAATTTCAAGCTTCTCTATTAAACCACAAATTCTTTAGGTGCCATCACTGTTCCTTGGCTTATATGTATGTGTACTTTGTTCTGTTACACACTGAACTTGTTACTGACAGAATTCTGTTTATTAGTTATCCACTTACAGCAAATTTTCAAACTTGAATGGATTTTGTAGATCATGGATTTAAACATACTTTAAATTGGAAGTCATTAAGTTTCTTGTTTTCCTTTCTATTCTGTGTATCTTCTTTGGTTAGAATCCAATTCAATTTGCTCAAAGATATTTTAGAAACAATCATTAAGAAATATAAGCTTTTGTTATCTTCAGTGTTAAATAATAGAGTATATTTTCATCAGATGTTTTGAATGAAAATAGGGGAGTTCCATAAAGCTAACAACTGAATATTCTATGAATTGCTGGCAGCCTGACACATTGACATCTTGTTAGATGATTGTTTCTTTCTAACTTCAATTAAGTGTGCATTCAGTGTGAAGGAAATTTTTTTCTTGAATAATGTTTTCTAGAAAAATAAGTGGATTTGTTACTTATTTTCTAATGTTCGGTATGTAAGCTAAAAATATCATCCTAAAAACATTTGCATGCATATAATCTAGACAAATGCTATGAGAGTGGGGCGGGTAGGGATATGGGGTAGTGGTGATGGGGGCTATGAGCATGGGGGATGAAGATGAGGTGTGTTGAAGGATGGGGGGAGCACAATCTTGTGGAATGTCACTTGTGGAACTTGTTTTCCTTACTTCCATCAGGGAGGTCATCTTCCTCATTTTAAGGAACTTATTTAACTTTTTTTATAGAAAATGTTTTCAAAACAATTTGATCAGCTGAACATGGGAACATTGGAAACCGTTTTCGCATATCTTCCATTCTGAACACTCCCTAAATATATTAGTAATTTGTTAGATGAGGTTACAAGCTATGCAGTTAATGCCCTTTAGTTAAGAGAGTAAGAGACAAATCTGTTTGACCAACGATCTAAAGCTAATTGGTGCTGGCTATATTCATATGGTGTTGTTTCTCTTCATCTTCCATTCACTTATTTAGGAGTTGTTCTAACCACTTTTGTTGGCGTTCTGCAAAATTGTTGATTGAAGATGTTTTCCTGGTACCTTCTTTTGCTTAAAGAATTATGAAGTTGCAAGAAAAGAGATGCTTTGTTTTTAGCAACTCATTCCCAAAATAGAAAATTCATTGATGAAATCTTGTAGAGATGTGTTCATAATTGTAGCAAAACCATGAACTTTCCCTCCCTGCTATCTACGTATTCCCATTGCCAGGAAAACCTGATGTTGGCGATTTCTTCAATGAAAAAAGCCTTTGACATATAGGCTTGGTCTGAAGGCTTTCTTTTGACAAGTGTCTTAACTAATCTTTATAGCTTAATCAGCTAAACATCTTAATATTTTCTTTTATGATGAAGAGAGTAGCATTACCGAGATCGAAATCTTTTCAGAACTTAATGATATTTAGTTGCTTTTGCTTACAACTCTGAAGTATAATTTTCCACCTCCTCTATTACAAAAGATGAGGACAACAATTGCATACATAATCTATCTTAGAGTCATAGTTTTTATCATTCTGGATATCTATGATTCTTTTTCCTTTCGTCATCATGTGTTACTCCTAGGAAAGTAGTCTTGGTGCAACAGTAGGAATACATTTGACCTGTGTGCTATTATTGGTACAAAAAACTTTGTCATGTAAGAGGTAAATCATAGGTCGCAACCAAAACTAAAATGTCAGATTTCTGTTGCCCTTATATCGAATATCTGGTCTGTATCCGAAGTAATAGTTCTTAGTGGTGTAGCACTCAATTGGTTTGTTTTATGCAGTTTGATGAACAAAAGGATAAAGTCT</genome_strand>
        <mrna_strand>TAAATTAAAGTCAACTTTTAGCTTCACTAAACGACAATATTCATTCCCCTAAATTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAACAAAAGGATAAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344370" ref_strand="+" ref_description="SGN-E344370 [cTOF-16-J2]">
      <seq>atggctgccgtcgaccaccgcacgcgacagcagtccaacggcaaactctcgtggctttgccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaagtttcaaactactgcaccaaagagctgctacatgcgacctccgggaggtattcttgtacctggggaaagtttgattgccactgtcttcaagtttattgaacaacctgagaacaatgagaagcctatagatcaaaagaccaaagtaaagttcaagatcataagtttgaaggtgaaagaaggaactgattatgtacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24161" stop="22066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23861" g_stop="23729" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="204" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22602" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="286" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22480" g_stop="22366" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="401" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E344370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23861" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22602"/>
          <exon e_start="22480" e_stop="22366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTGGTATAGTCTAAATTTCTCCTCACTTTTATTTCAATTAATTTAATATCCTTTTTGTTTTCAGTGGAAAACAGATTTGGTTTTACATCTTCCATTTATTATCTGTTATGCATCTGATTGACAGTCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGA</genome_strand>
        <mrna_strand>ATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG.........................................................................................................................TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391687" ref_strand="+" ref_description="SGN-E391687 [TUS-27-D20]">
      <seq>ctgccgtcgaccaccgcacgcgacagcagtccaacggcaaactctcgtggctttgccccttcactaaatccatatttccggctaagcgtcggctccggcttgatccttctaacaatctctactttccatatgaacctggaaagcaggcgaagagtgccataaagattaagaacacaagcaaatcttttgtagcattcaggtttcaaactactgcaccagagagctgctacatgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24157" stop="22348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23857" g_stop="23729" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23104" g_stop="23034" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="200" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22683" g_stop="22648" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="236" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E391687" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23857" e_stop="23729"/>
          <exon e_start="23104" e_stop="23034"/>
          <exon e_start="22683" e_stop="22648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCATGTGAGTCATCGCTCCTAAACCCTATACTACTGTATTGCACTTTAAAGTCGTCAGGTTCGAAGAAATTGTTATTGTTTGAATTATTCAGAGTACGAAGAGAAGTAATCTGGGCTCAAATTTTGTATTTTTGTTGAAAAAATTCATTTCATATGTACAATAGAACTCATAAACTAAAAATCGTAGCTTTGCCTCGGATTATTTACTAGTGTAGGGTGGAGTAGTAAATACTGACAATCAAGTGATATATAGTCGAATTTATGACATGTGTAAAGCAAAATTGGTTCTGATAATCGTGGTGTCAGGGTCAGCTCGTGAGCTCCTCGATTAACTCCATGAGATACCTGTTATCTCTCACCAGCAATAGGTACCGAGTAACTTATCCACCATGGCTAGAACAGATGGGGAAAAATCACCTACTGTTTTGTCTCTTCTAGGAATTAAACCTGAGACCTTATGATGCTCAACTCTCTTTTATACACTTTGAAAATGATTTTTATCAAGGAAAACATTTTCCGTTGTACCAAGTAGTATTATTTTAATGTTTGAAGCAACAAATTTTGTTTTAGCTATGTAATGTTGGCAATGATAGAATGATGGTTGCTGTTTTACTTTTATGTCCTGAAGATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAGGTAAAATATTTTCCCATATTTCTTGTGTTTGCAGCCTAACAAGCTTTTGGCATTCATAACAAATGCAGATTTTTAAAATTTTTATTTTAGATGAAACACAGATTTGAGTATGCGGTGCCATTGATATTTTTCCAGCTTTACCATTTCTGCATCACTTTTTGCATGCAGTAGCTTACTGATTTATAACTTGCTTAAGTTATAAATTTTTGTTTCTTGCAAAATTCGATTCAAAGATATTGTATTGTTATCTAAATCATCAATCCATGTGGATGATTAAATAAGCAGTGGTTTAAGCTTCTAATTCCTTTTTGAATTTTTAAGTAAGTTTCTGGTTCCTTTTGAATATTTAGTTTCAAACTACTGCACCAAAGAGCTGCTACATGCGA</genome_strand>
        <mrna_strand>CTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAGG..............................................................................................................................................................................................................................................................................................................................................................TTTCAAACTACTGCACCAGAGAGCTGCTACATGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213185" ref_strand="+" ref_description="SGN-E213185 [cLEC-72-D15]">
      <seq>aaaaaagaatcctggtattaactgccagtccgtgaagtcgttcctgaatcaagtgaaaaatggaaaagaaatgaaagttgacagctggcatattgtaatgaaaatgagggctcctaaagaaggttcttgtgatcctattgcacctcttgagctaccacattcattgcatgcttttcgcggtgcgcctcaagctgatactttgaacaaggaaggctatcatgtatttcggggaggattttggaactacttcagcataggaatggatgctcaagtttcacatgcatttcacagcaagaggaagctccatccagaaaagttcaaacaccagttggttaatcagaggaattatgcaaagcttgtctgtaaacaaggatggttttgcacttctttcatgcacccatcgtcaagaaacattgctcagttagcaaatgtcaaaataatgaaaagatcaggtgaatggatagacctacacattcctagcagcattaggtctattgtctgccttaatttgcccagcttttcgggtggacttaatccttggggaaaacctaacaagcagaagctgcatgagagggatcttactcctccatatgttgatgatggtctacttgaagttgttggttttcgcgatgcttggcatggacttattttgtttactccaggaaggcacggaacacgtcttgcacaggcgaatagaatacgatttgagtttcacaagggtgctagtgagcatacatttatgagaatgggatgggaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29758" stop="26544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29458" g_stop="29375" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29374" i_stop="29207" i_length="168">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29206" g_stop="29083" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="208" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29082" i_stop="28962" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28961" g_stop="28913" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="257" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28912" i_stop="28525" i_length="388">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28524" g_stop="28442" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="340" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28441" i_stop="28279" i_length="163">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28278" g_stop="28211" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="408" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28210" i_stop="27456" i_length="755">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.863" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27455" g_stop="27381" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="483" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27380" i_stop="27303" i_length="78">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27302" g_stop="27215" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="571" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27214" i_stop="27139" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27138" g_stop="27022" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="688" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27021" i_stop="26917" i_length="105">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26916" g_stop="26848" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="757" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E213185" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29458" e_stop="29375"/>
          <exon e_start="29206" e_stop="29083"/>
          <exon e_start="28961" e_stop="28913"/>
          <exon e_start="28524" e_stop="28442"/>
          <exon e_start="28278" e_stop="28211"/>
          <exon e_start="27455" e_stop="27381"/>
          <exon e_start="27302" e_stop="27215"/>
          <exon e_start="27138" e_stop="27022"/>
          <exon e_start="26916" e_stop="26848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAATCCTGGTATTAACTGCCAGTCCGTGAAGTCGTTCCTGAATCAAGTGAAAAATGGAAAAGAAATGAAAGTTGACAGGTAACTTGGTTTTACTTGCATAGTGAATTTGAAGGTTCCCTGACTCTTTTGCTACCTGTGTCTGGCTGGAATTTCATGAATCTCTACAATGCACGCACAAGTTTTTTTTCTTCTTAATATAGATGTTGATAAATCCGAAATGACATGATGGTTATTGTGTTTCATCAGCTGGCATATTGTAATGAAAATGAGGGCTCCTAAAGAAGGTTCTTGTGATCCTATTGCACCTCTTGAGCTACCACATTCATTGCATGCTTTTCGCGGTGCGCCTCAAGCTGATACTTTGAACAAGGTATCAAATTCTTCAATCCATTTTCTTATGTAGTGTATTATGCAGCTAGAAATGTATACCAGCAAAGAGAATCAAATTCTTCAGTCAATTTTCTTATACGGTGAATTCTGCTTATTTTCAGGAAGGCTATCATGTATTTCGGGGAGGATTTTGGAACTACTTCAGCATAGGTAAGAATTGTAATCTATCTTTTGAATTACATCTTCAACTGATCTTTACAATATTGTATTACTCCATTTTGGCATTTTCTAGTCCAGAAGAAACATTTTCAGTTGGTATACATATAGCCTGTTTTAGCAAACAGTTATGAGACTAGATTGGTTTTATGACACCATTGTATATGTTGGTGAAAGCTAAAACCAACAGTATATCTATACTAAAAGCTGTATTTCAGAGATCTACATTTCGTAGAAACACTTCATATTGAATCTGTTCAGCAGTGAGATCTTTCCTAGTGTGGCCGATTTGATCAAGAGCTTAATTCTTGCGTTATCTGGTGTAATATTAATATTTTCATTCCTGAGTTGAAGTTTTTCACTTTTTTCCGTCAACTTGTAGGAATGGATGCTCAAGTTTCACATGCATTTCACAGCAAGAGGAAGCTCCATCCAGAAAAGTTCAAACACCAGTTGGTTAATCAGGTCCTTATTGTCATTTGGAATATGGTGTTATAATGTTATATTTTCCTACATGTTGTTTAATCTTTATGTACTTCAACTCTTGATCCTTTTGTCTTTTCATTTGTTCAATTACTTTTATATGAAATATCTGATGGTCTTTTCTCTTTGTTCACCATTTGTTTAGAGGAATTATGCAAAGCTTGTCTGTAAACAAGGATGGTTTTGCACTTCTTTCATGCACCCATCGTCAAGGTTAGTTTTATAGTCAAGGTTAACCTATATGTATATCGTTGCTCGTATCATTTATTTCCTTCATTATTTGAACACATACCATTACCTCTCTCCCTGCCCATACGACACCATGGTTTGGGAAATAACTTTTAGCAATTGTGAACTTCGAGAACCCTCCTTTAGATGAAAACCTTGTATTGATACTGATTCTAGTACAGTATCAGTAATTTTCTCTTGTTCTTCATAGTGAATAGTGGTTGTTGTGTAGCGCCAACATTTTGCCTATGGCAAGACCTATGAGGGGGATGAAGTGGCTTGGGTCAGAGTCAACGATAGAACATGGCACTTGCTTAATTGGTTCTCTTAGTTTAGAAATAAAGTTGTGCCTTTGCTATTAGCTATAACTTTTTGCATAATGGTAGCACTTGATCCTAACAAGTAGTATCAGAGTCAAAATCACAAATTCAATTTCCAAGAGCAACATGTTGCATGAGGCAGGTGTTGAGAGAGGGGGATTGTTAATGCCAACATTCTACCTATGGCAAGACCCCATGAGAGGGGTTGGAGTGGCACGGGTCATAATCATAAATCATAAATCAAACAGCGCTTGGTTGGTGAGATTAGTTAAGAATAAAGTTGTGCCCTTACTATCAACTATGTCTGTTCTGTGTTACATTTAGTATGTGAAGATAATGATGACTGTAACATTGCCTCTCTTAATAACTACAGTATCATTTCAAACTAAACATATTGATCGAATCTGTTTCTGCGCGCAGAAACATTGCTCAGTTAGCAAATGTCAAAATAATGAAAAGATCAGGTGAATGGATAGACCTACACATTCCTAGCAGGTAGTAATATGGTTCTCTATTACCTACTGCATTACTTTCGCGCCTTTTTCTTAACCATATCTGTGGTTCGATATGCAGCATTAGGTCTATTGTCTGCCTTAATTTGCCCAGCTTTTCGGGTGGACTTAATCCTTGGGGAAAACCTAACAAGCAGAAGCTGCATGAGGTTAGTTTCGATTTTCTTTAACTATCCTCTTCCAAAATGTGTCAATAATGTAAAACATTTTCTGTACTTTAAACAGAGGGATCTTACTCCTCCATATGTTGATGATGGTCTACTTGAAGTTGTTGGTTTTCGCGATGCTTGGCATGGACTTATTTTGTTTACTCCAGGAGGGCACGGAACACGTCTTGCACAGGTTGTTAATTCAATATAAACATGTTTCATTGGTTAATATGTTCTTACTGATCGATCGTTAGATCATAGATGTACAATGTTCATCTCTATTCTACTGTTTTTTTAGGCGAATAGAATACGATTTGAGTTTCACAAGGGTGCTAGTGAGCATACATTTATGAGAATGGATGGGGAA</genome_strand>
        <mrna_strand>AAAAAAGAATCCTGGTATTAACTGCCAGTCCGTGAAGTCGTTCCTGAATCAAGTGAAAAATGGAAAAGAAATGAAAGTTGACAG........................................................................................................................................................................CTGGCATATTGTAATGAAAATGAGGGCTCCTAAAGAAGGTTCTTGTGATCCTATTGCACCTCTTGAGCTACCACATTCATTGCATGCTTTTCGCGGTGCGCCTCAAGCTGATACTTTGAACAAG.........................................................................................................................GAAGGCTATCATGTATTTCGGGGAGGATTTTGGAACTACTTCAGCATAG....................................................................................................................................................................................................................................................................................................................................................................................................GAATGGATGCTCAAGTTTCACATGCATTTCACAGCAAGAGGAAGCTCCATCCAGAAAAGTTCAAACACCAGTTGGTTAATCAG...................................................................................................................................................................AGGAATTATGCAAAGCTTGTCTGTAAACAAGGATGGTTTTGCACTTCTTTCATGCACCCATCGTCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATTGCTCAGTTAGCAAATGTCAAAATAATGAAAAGATCAGGTGAATGGATAGACCTACACATTCCTAGCAG..............................................................................CATTAGGTCTATTGTCTGCCTTAATTTGCCCAGCTTTTCGGGTGGACTTAATCCTTGGGGAAAACCTAACAAGCAGAAGCTGCATGAG............................................................................AGGGATCTTACTCCTCCATATGTTGATGATGGTCTACTTGAAGTTGTTGGTTTTCGCGATGCTTGGCATGGACTTATTTTGTTTACTCCAGGAAGGCACGGAACACGTCTTGCACAG.........................................................................................................GCGAATAGAATACGATTTGAGTTTCACAAGGGTGCTAGTGAGCATACATTTATGAGAATGGGATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394349" ref_strand="+" ref_description="SGN-E394349 [TUS-14-G10]">
      <seq>attcgctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgactgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcaaaaaggcgcgaaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcaatatactccttttaatatcaatgaagtagaaaatcttattattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37994" stop="36917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37694" g_stop="37542" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37465" g_stop="37204" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="415" r_length="262" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E394349" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37694" e_stop="37542"/>
          <exon e_start="37465" e_stop="37204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTAT</genome_strand>
        <mrna_strand>ATTCGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGACTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAAAAAG............................................................................GCGCGAAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAATATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346558" ref_strand="+" ref_description="SGN-E346558 [cTOF-28-K8]">
      <seq>ttagctcatatagaggatatatgtcgcgccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcagtatactccttttaatatcaatgaagtagaaaatcttattattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37993" stop="36917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37693" g_stop="37542" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37465" g_stop="37204" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="413" r_length="262" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E346558" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37693" e_stop="37542"/>
          <exon e_start="37465" e_stop="37204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTAT</genome_strand>
        <mrna_strand>TTAGCTCATATAGAGGATATATGTCGCG-CCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG............................................................................GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341878" ref_strand="+" ref_description="SGN-E341878 [cTOF-9-L14]">
      <seq>ttagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcagtatactccttttaatatcaatgaagtagaaaatcttattattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37993" stop="36917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37693" g_stop="37542" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37465" g_stop="37204" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="414" r_length="262" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E341878" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37693" e_stop="37542"/>
          <exon e_start="37465" e_stop="37204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTAT</genome_strand>
        <mrna_strand>TTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG............................................................................GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393907" ref_strand="+" ref_description="SGN-E393907 [TUS-14-G10](-)">
      <seq>attagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggacttggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggatttttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcagtatactccttttaatatcaatgaagtagaaaatcttattatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37994" stop="36918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37694" g_stop="37542" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37465" g_stop="37205" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="414" r_length="261" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E393907" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37694" e_stop="37542"/>
          <exon e_start="37465" e_stop="37205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTA</genome_strand>
        <mrna_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG............................................................................GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTTGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTTTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393066" ref_strand="+" ref_description="SGN-E393066 [TUS-37-H10](-)">
      <seq>attagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcagtatactccttttaatatcaatgaagtagaaaatcttattatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37994" stop="36918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37694" g_stop="37542" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37465" g_stop="37205" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="414" r_length="261" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E393066" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37694" e_stop="37542"/>
          <exon e_start="37465" e_stop="37205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTA</genome_strand>
        <mrna_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG............................................................................GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346063" ref_strand="+" ref_description="SGN-E346063 [cTOF-24-D20]">
      <seq>atacttgttaacacgtcttttaatttttttatagatgatcctgatatgttagctatactcaccgctgtaaacacaagaatgggatcaatagcattagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggttattccattcgatttctactgcaataattaaatccacatgaagtttatatatagtctaattatctgtgttacaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtaagaattgcaaattacatgtaccaaaaccttaactcttactttgatgtatcagtatacctccttttaatantcaatgaagtagaaaatcttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="38086" stop="36921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37786" g_stop="37212" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E346063" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37786" e_stop="37212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTGTTAACACGTCTTTTAATTTTTTTATAGATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATA-CTCCTTTTAATA-TCAATGAAGTAGAAAATCTTATTATTTTTTTAA</genome_strand>
        <mrna_strand>ATACTTGTTAACACGTCTTTTAATTTTTTTATAGATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACCTCCTTTTAATANTCAATGAAGTAGAAAATCTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393067" ref_strand="+" ref_description="SGN-E393067 [TUS-37-H10]">
      <seq>attagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaacgagtatccttaccttgatgcagagaggcgcggaggacatgattcagtgatcccctcggagatttcatcaaagaaattgagaggactcggattttctttcaagtatgaaatcaacgatatcataagagatacaattactagttgtatacatcatggattcttagcctcaattcaaaagtatgaattgcaaattacatgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37994" stop="36991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37694" g_stop="37542" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37465" g_stop="37291" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="328" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E393067" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37694" e_stop="37542"/>
          <exon e_start="37465" e_stop="37291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACC</genome_strand>
        <mrna_strand>ATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG............................................................................GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTATGAATTGCAAATTACATGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272706" ref_strand="+" ref_description="SGN-E272706 [cLEM-21-G10]">
      <seq>gagaactagtctgatagagccagccatcgaagggaccttgaatgttctgaaatcgtgcttgaaatgcaattctgttaaaaaagttgtattcacatcatcaatcagtaccatcacagccagagacaactttgggagatggagaccttttgtcgatgaatcttgcaaagtacctatccaacatgttaagcacacaaaaccaactggttgggtttatgtactactaaaggttttgacagaggatgcagcatttcagtttgcaaaagaaaatggcattaatttggtttcaacgataacaccaactatagctggtccattcctcactcctacagttccatcaagcattcaagttctcttgtcaccaataacagatgatcctgatatgttagctatactcaccgctgtaaacacaagaatgggatcaatagcattagctcatatagaggatatatgtcgcgcccacatattcctcatggagaatattaaagcacaaggacgatatatatgttgtgctcagagttgggcattgtctgaagttatcgatcaccttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="38576" stop="37269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38284" g_stop="38076" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38075" i_stop="37980" i_length="96">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37979" g_stop="37820" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="368" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37819" i_stop="37753" i_length="67">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37752" g_stop="37569" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="552" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E272706" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38284" e_stop="38076"/>
          <exon e_start="37979" e_stop="37820"/>
          <exon e_start="37752" e_stop="37569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAAAATATGATAGAGCCAGCCATCGAAGGGACCTTGAATGTTCTGAAATCGTGCTTGAAATCCAATTCTGTTAAAAAAGTTGTATTCACATCATCAATCAGTACCATCACAGCCAGAGACAACTTTGGGAGATGGAGACCTTTTGTCGATGAATCTTGCAAAGTACCTATCCAACATGTTAAGCACACAAAACCAACTGGTTGGGTAATTCTCTATCGGACCCTTAAAAAGTAATGCATTATTTGAGCGTATCAAAAGTAGTACTTTCAGTTTTTACATTATTTATCGATTATTATACAGGTTTATGTACTACTAAAGGTTTTGACAGAGGATGCAGCATTTCAGTTTGCAAAAGAAAATGGCATTAATTTGGTTTCAACGATAACACCAACTATAGCTGGTCCATTCCTCACTCCTACAGTTCCATCAAGCATTCAAGTTCTCTTGTCACCAATAACAGGTTTGACATAACTCAGTAACTAACGCACCTACAATACTTGTTAACACGTCTTTTAATTTTTTTATAGATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAA</genome_strand>
        <mrna_strand>GAGAA-CTAGTCTGATAGAGCCAGCCATCGAAGGGACCTTGAATGTTCTGAAATCGTGCTTGAAATGCAATTCTGTTAAAAAAGTTGTATTCACATCATCAATCAGTACCATCACAGCCAGAGACAACTTTGGGAGATGGAGACCTTTTGTCGATGAATCTTGCAAAGTACCTATCCAACATGTTAAGCACACAAAACCAACTGGTTGG................................................................................................GTTTATGTACTACTAAAGGTTTTGACAGAGGATGCAGCATTTCAGTTTGCAAAAGAAAATGGCATTAATTTGGTTTCAACGATAACACCAACTATAGCTGGTCCATTCCTCACTCCTACAGTTCCATCAAGCATTCAAGTTCTCTTGTCACCAATAACAG...................................................................ATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359235" ref_strand="+" ref_description="SGN-E359235 [cLHT-11-H12]">
      <seq>atttttctccaaatttataaatctacaagttagattcctccttctgcagattatatcaggtgtattttggtgaagcagatataagtgctagtgagaaagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgttttcttcataccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagtttttcaagtggttcctcactggattataaccaatatttccatcggccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacgaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41212" stop="43040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41512" g_stop="41571" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652">
            <donor d_prob="0.974" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42224" g_stop="42740" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="575" r_length="516" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E359235" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41512" e_stop="41571"/>
          <exon e_start="42224" e_stop="42740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAGGTATTTTATTTTTTTCAGATTTTGATATCTTCTTTGTTTTCGAACAGTTGATGAAACCAGAAATTGAAAGATGATTTGGTTTTTGTGATTCATTTTTCATATGTGAACTAGCTTTATAATTGAATAGACTTATATAGCAATTTTTGGTATTGTATCTGTGAACTAGCTTGGTTAATTTGGTGAATCTACTGTAAAAAATTTTTTTAGGGATTTTTGTAAGAAAAAGGGAATGGAGTTACGAATATTCAGGAGATTCTATTTGAAAAGCTTGTTTAGAATGGAAACCGAAAGGAAATGGCACTTTTTCATTAGTATTAGTACTATTTTTGAGGAAAATTGAGGGCATGGGAGGGGAGTCAAAGTCACCGACAGGGTGAAAATTAAGTTAATCATAACTAAGCTATTAAGATTTTGGAGGAAATGGTCATCATGTTTTCACAGGCAATTAACTACCTATCTGTGGTGCAGGGTTTTCCTTTAAAAATCATAAAATGATTCTAATCTGGCAATTATTTGCAGTAAGATTAGAACTAATTAGCTTCGTTCTGTTCCTTGTTTTTGTATATCCATTAACTCAAAAGTAGGAAGCTTGATTGTCTTATGATAGAGGGTTGAGTAATTGATGTGGGTTGGATCTCTTTATTTTTCACAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGA</genome_strand>
        <mrna_strand>ATTTTTCTCCAAA-TTTATAAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTATTTTGGTGAAGCAGATA-TAAGTGCTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTTTTCTTCATACCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTTTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGGCCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACGAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206237" ref_strand="+" ref_description="SGN-E206237 [cLEC-29-H2]">
      <seq>tccaaattttatcaatctacaagttagattcctccttctgcagattatatcaggtggatttcggtgaaccagatattaagtgttagtgagaaagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccgggagtcgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccattcggtacatcgaaatttgattcaggaagttcgccacttgtgaactattctaactctgagaccttcaccacagtaagtgattaccaggagcaccccagctgtacagagaatctttcaggtgctagactcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagactaagaggcaatgaaatgcagcccttatcttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41219" stop="42996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41519" g_stop="41571" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42224" g_stop="42696" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="528" r_length="475" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E206237" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41519" e_stop="41571"/>
          <exon e_start="42224" e_stop="42696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAGGTATTTTATTTTTTTCAGATTTTGATATCTTCTTTGTTTTCGAACAGTTGATGAAACCAGAAATTGAAAGATGATTTGGTTTTTGTGATTCATTTTTCATATGTGAACTAGCTTTATAATTGAATAGACTTATATAGCAATTTTTGGTATTGTATCTGTGAACTAGCTTGGTTAATTTGGTGAATCTACTGTAAAAAATTTTTTTAGGGATTTTTGTAAGAAAAAGGGAATGGAGTTACGAATATTCAGGAGATTCTATTTGAAAAGCTTGTTTAGAATGGAAACCGAAAGGAAATGGCACTTTTTCATTAGTATTAGTACTATTTTTGAGGAAAATTGAGGGCATGGGAGGGGAGTCAAAGTCACCGACAGGGTGAAAATTAAGTTAATCATAACTAAGCTATTAAGATTTTGGAGGAAATGGTCATCATGTTTTCACAGGCAATTAACTACCTATCTGTGGTGCAGGGTTTTCCTTTAAAAATCATAAAATGATTCTAATCTGGCAATTATTTGCAGTAAGATTAGAACTAATTAGCTTCGTTCTGTTCCTTGTTTTTGTATATCCATTAACTCAAAAGTAGGAAGCTTGATTGTCTTATGATAGAGGGTTGAGTAATTGATGTGGGTTGGATCTCTTTATTTTTCACAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGT-GATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAG-TTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGA</genome_strand>
        <mrna_strand>TCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCGGTGAACCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGGAGTCGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTCGGTACATCGAAATTTGATTCAGGAAGTTCGCCACTTGTGAACTATTCTAACTCTGAGACCTTCACCACAGTAAGTGATTACCAGGAGCACCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGACTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACTAAGAGGCAATGAAATGCAGCCCTTATCTTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277518" ref_strand="+" ref_description="SGN-E277518 [cLER-3-L11]">
      <seq>aaattttatcaatctacaagttagattcctccttctgcagattatatcaggtggatttcagtgaagcagatattaagtgttagtgagaaagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41222" stop="42977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41522" g_stop="41571" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42224" g_stop="42677" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="504" r_length="454" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E277518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41522" e_stop="41571"/>
          <exon e_start="42224" e_stop="42677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAGGTATTTTATTTTTTTCAGATTTTGATATCTTCTTTGTTTTCGAACAGTTGATGAAACCAGAAATTGAAAGATGATTTGGTTTTTGTGATTCATTTTTCATATGTGAACTAGCTTTATAATTGAATAGACTTATATAGCAATTTTTGGTATTGTATCTGTGAACTAGCTTGGTTAATTTGGTGAATCTACTGTAAAAAATTTTTTTAGGGATTTTTGTAAGAAAAAGGGAATGGAGTTACGAATATTCAGGAGATTCTATTTGAAAAGCTTGTTTAGAATGGAAACCGAAAGGAAATGGCACTTTTTCATTAGTATTAGTACTATTTTTGAGGAAAATTGAGGGCATGGGAGGGGAGTCAAAGTCACCGACAGGGTGAAAATTAAGTTAATCATAACTAAGCTATTAAGATTTTGGAGGAAATGGTCATCATGTTTTCACAGGCAATTAACTACCTATCTGTGGTGCAGGGTTTTCCTTTAAAAATCATAAAATGATTCTAATCTGGCAATTATTTGCAGTAAGATTAGAACTAATTAGCTTCGTTCTGTTCCTTGTTTTTGTATATCCATTAACTCAAAAGTAGGAAGCTTGATTGTCTTATGATAGAGGGTTGAGTAATTGATGTGGGTTGGATCTCTTTATTTTTCACAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAAT</genome_strand>
        <mrna_strand>AAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCAGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207031" ref_strand="+" ref_description="SGN-E207031 [cLEC-30-A15]">
      <seq>tcaatctacaagttagatttctccttctgcagattatatcaggtggatttcggtgaagcagatattaagtgttagtgagaaagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41230" stop="43037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41530" g_stop="41571" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42224" g_stop="42737" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="556" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E207031" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41530" e_stop="41571"/>
          <exon e_start="42224" e_stop="42737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAGGTATTTTATTTTTTTCAGATTTTGATATCTTCTTTGTTTTCGAACAGTTGATGAAACCAGAAATTGAAAGATGATTTGGTTTTTGTGATTCATTTTTCATATGTGAACTAGCTTTATAATTGAATAGACTTATATAGCAATTTTTGGTATTGTATCTGTGAACTAGCTTGGTTAATTTGGTGAATCTACTGTAAAAAATTTTTTTAGGGATTTTTGTAAGAAAAAGGGAATGGAGTTACGAATATTCAGGAGATTCTATTTGAAAAGCTTGTTTAGAATGGAAACCGAAAGGAAATGGCACTTTTTCATTAGTATTAGTACTATTTTTGAGGAAAATTGAGGGCATGGGAGGGGAGTCAAAGTCACCGACAGGGTGAAAATTAAGTTAATCATAACTAAGCTATTAAGATTTTGGAGGAAATGGTCATCATGTTTTCACAGGCAATTAACTACCTATCTGTGGTGCAGGGTTTTCCTTTAAAAATCATAAAATGATTCTAATCTGGCAATTATTTGCAGTAAGATTAGAACTAATTAGCTTCGTTCTGTTCCTTGTTTTTGTATATCCATTAACTCAAAAGTAGGAAGCTTGATTGTCTTATGATAGAGGGTTGAGTAATTGATGTGGGTTGGATCTCTTTATTTTTCACAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGT</genome_strand>
        <mrna_strand>TCAATCTACAAGTTAGATTTCTCCTTCTGCAGATTATATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204872" ref_strand="+" ref_description="SGN-E204872 [cLEC-14-B4]">
      <seq>tcaggtggatttcggtgaagcagatattaagtgttagtgagaaagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41921" stop="42785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42220" g_stop="42485" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E204872" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42220" e_stop="42485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGC</genome_strand>
        <mrna_strand>TCAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208315" ref_strand="+" ref_description="SGN-E208315 [cLEC-37-C13]">
      <seq>ttaagtgttagtgagaaagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgcattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcatgaaattcggcacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagatcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttgcagaagctccttacagtcggaacatgaaacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41946" stop="42924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42246" g_stop="42624" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E208315" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42246" e_stop="42624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATAC</genome_strand>
        <mrna_strand>TTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGCATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCATGAAATTCGGCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGATCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTGCAGAAGCTCCTTACAGTCGGAACATGAAACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213779" ref_strand="+" ref_description="SGN-E213779 [cLEC-76-K21]">
      <seq>aagagtttgcgcatagagcagctaatgacagccgtatagtatggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttactggagatcccatccagcgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41962" stop="43286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42262" g_stop="42986" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E213779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42262" e_stop="42986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTG</genome_strand>
        <mrna_strand>AAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205216" ref_strand="+" ref_description="SGN-E205216 [cLEC-16-J6]">
      <seq>tggactcgcaccatttggttgcttatggtgtgaccggtagtgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42003" stop="43006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42303" g_stop="42706" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E205216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42303" e_stop="42706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGG</genome_strand>
        <mrna_strand>TGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202307" ref_strand="+" ref_description="SGN-E202307 [cLEC-6-K10]">
      <seq>ttggttgcttatggtgtgaccggtagtgatttgtcgtattcttcatgccctactgttagtcctctagagaatagaccatttggtacatcgaaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttcaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaagcaaggagtgttgtgtccgttactggagatcccatccagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42017" stop="43283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42317" g_stop="42983" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E202307" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42317" e_stop="42983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTC</genome_strand>
        <mrna_strand>TTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAAGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207914" ref_strand="+" ref_description="SGN-E207914 [cLEC-34-O2]">
      <seq>acatcgcaatttgattcaggaaattcgccacttgtgaactattttaactctgagaccttgaacacagtaagtgattaccaggagcagcccagctgtacagagaatctttcaggcgctagttcttcaagtggctactcactggattatagccaatatttccatcgaccaagcccctcggaagatcatctttcagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggagaaaatatgggggcacaaacatcatgtcagaggtataaagcgtggaacatggaagcccaagttgtgcgtcatcaacaatcagtggttccaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42101" stop="43264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42401" g_stop="42964" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E207914" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42401" e_stop="42964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACT</genome_strand>
        <mrna_strand>ACATCGCAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTGAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGCGCTAGTTCTTCAAGTGGCTACTCACTGGATTATAGCCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTTCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGAGAAAATATGGGGGCACAAACATCATGTCAGAGGTATAAAGCGTGGAACATGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTGGTTCCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208455" ref_strand="+" ref_description="SGN-E208455 [cLEC-37-L10]">
      <seq>ttaccatgagcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttactggagatcccatccagcgtcttggtgcttacattgtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42175" stop="43302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42475" g_stop="43002" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E208455" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42475" e_stop="43002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGA</genome_strand>
        <mrna_strand>TTACCATGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214256" ref_strand="+" ref_description="SGN-E214256 [cLEC-77-H11]">
      <seq>gcagcccagctgtacagagaatctttcaggtgctagttcttcaagtggttcctcactggattataaccaatatttccatcgaccaagcccctcggaagatcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccggtactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42184" stop="43266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42484" g_stop="42966" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E214256" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42484" e_stop="42966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGG</genome_strand>
        <mrna_strand>GCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGGTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204076" ref_strand="+" ref_description="SGN-E204076 [cLEC-27-G15]">
      <seq>tcatcttccagaagctccttacagtcggaacatgaaacatactctgctgcagttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttactggagatcccatccagcgtcttggtgcttacattgtagaaggcctcgtagcaagaaaggagttatctggaactaccatatacaggagtttaaagtgtaaggagccggctggtaaggacttgttctcctacatgtatatcctctatgaaatatgtccttacctaaagttcggctacatggctgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42283" stop="43450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42583" g_stop="43150" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E204076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42583" e_stop="43150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAAT</genome_strand>
        <mrna_strand>TCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207944" ref_strand="+" ref_description="SGN-E207944 [cLEC-34-H23]">
      <seq>tctctctcgttggagtctgctttaatggggccagacaaagaggcaatgaaatccagcccttatcttggtgaaaatatgggggcacaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttactggagatcccatccagcgtcttggtgcttacattgtagaaggcctcgtagcaagaaaggagttatctggaactaccatatacaggagtttaaagtgtaaggagccggctggtaaggacttgttctcctacatgtatatcctctatgaaatatgtccttacctaaagttcggctacatggctgcaaatggtgccatagtagaagcatgcagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42324" stop="43478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42625" g_stop="43178" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E207944" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42625" e_stop="43178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATG</genome_strand>
        <mrna_strand>TCT-CTCTCGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214893" ref_strand="+" ref_description="SGN-E214893 [cLEC-78-K6]">
      <seq>acaaacatcaggtcagaggtataaagcgtggaacaaggaagcccaagttgtgcgtcatcaacaatcagtagtttcaatccttaatggaattcaaagtgataagcgagacaatgtaatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttactggagatcccatccagcgtcttggtgcttacattgtagaaggcctcgtagcaagaaaggagttatctggaactaccatatacaggagtttaaagtgtaaggagccggctggtaaggacttgttctcctacatgtatatcctctatgaaatatgtccttacctaaagttcggctacatggctgcaaatggtgccatagtagaagcatgcagaaatgaagatcgcatccacattatagacttccaaattgcacaggggacccaatggatgactctcttacaagctcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgantcagtttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggattcaacattgctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42409" stop="43688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42709" g_stop="43388" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E214893" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42709" e_stop="43388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTG</genome_strand>
        <mrna_strand>ACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGANTCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGG-ATTCAACATTGCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249445" ref_strand="+" ref_description="SGN-E249445 [cLEF-50-J12]">
      <seq>aatggaggacttgcccttgcagggtgttccgtctagcaatctgaagcagctgcttatagcatgcgccagagctcttgctgaaaacaagctagatgattttgaaatactggttgctaaggcaaggagtgttgtgtccgttactggagatcccatccagcgtcttggtgcttacattgtagaaggcctcgtagcaagaaaggagttatctggaactaccatatacaggagtttaaagtgtaaggagccggctggtaaggacttgttctcctacatgtatatcctctatgaaatatgtccttacctaaagttcggctacatggctgcaaatggtgccatagtagaagcatgcagaaatgaagatcgcatccacattatagacttccaaattgcacaggggacccaatggatgactctcttacaagctcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgatccagtttcacagtacgctcggggagatggattggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42523" stop="43637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42823" g_stop="43337" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E249445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42823" e_stop="43337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTG</genome_strand>
        <mrna_strand>AATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250894" ref_strand="+" ref_description="SGN-E250894 [cLEG-13-M17]">
      <seq>cggctggtaaggacttgttctcctacatgtatatcctctatgaagggtgtccttacctaaagttcggctacatggctgcaaatggtgccatagtagaagcatgcagaaatgaagatcgcatccacattatagacttccaaattgcacaggggacccaatggatgactctcttacaagctcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgatccagtttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggaattcaacattgctgttgagtttcatgcagtgccagtttttgctccggaaatcacttgggatatgcttgatgtaaggcctgggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42768" stop="43806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43068" g_stop="43506" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E250894" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43068" e_stop="43506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCT-GGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAG</genome_strand>
        <mrna_strand>CGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAGGGTGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213002" ref_strand="+" ref_description="SGN-E213002 [cLEC-72-G20]">
      <seq>gttctcctacatgtatatcctctatgaaatatgtccttacctaaagttcggctacatggctgcaaatggtgccatagtagaagcatgcagaaatgaagatcgcatccacattatagacttccaaattgcacaggggacccaatggatgactctcttacaagctcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgatccagtttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggaattcaacattgctgttgagtttcatgcagtgccagtttttgctccggaaatcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctanggatatagtgaatgtcatagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42784" stop="44054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43084" g_stop="43754" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E213002" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43084" e_stop="43754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCAT</genome_strand>
        <mrna_strand>GTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTANGGATATAGTGAATGTCATAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250958" ref_strand="+" ref_description="SGN-E250958 [cLEG-13-J9]">
      <seq>catggctgcaaatggtgccatagtagaagcatgcagaaatgaagatcgcatccacattatagacttacaaattgctcatgggaccccatggatgactttcttacaagcgtcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgatccagtttcacagttcgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggaattcaacattgctgttgagtttcatgcagagccagtttttgctccggaaatcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaactttaccacacccctgatgagagcgttgacgtgaataaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42838" stop="43825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43138" g_stop="43525" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E250958" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43138" e_stop="43525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGC-TCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCT</genome_strand>
        <mrna_strand>CATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTACAAATTGCTCATGGGACCCCATGGATGACTTTCTTACAAGCGTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTTCGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGAGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTTACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207230" ref_strand="+" ref_description="SGN-E207230 [cLEC-30-D6]">
      <seq>ttccaaattgcacaggggacccaatggatgactctcttacaagctcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgatccagtttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggaattcaacattgctgttgagtttcatgcagtgccagtttttgctccggaaatcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42902" stop="43982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43202" g_stop="43682" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E207230" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43202" e_stop="43682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTAC</genome_strand>
        <mrna_strand>TTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273556" ref_strand="+" ref_description="SGN-E273556 [cLEN-6-L7]">
      <seq>tgactctcttacaagctcttgcagcacgacccggtggtgccccctacgtacgtattacaggaattgatgatccagtttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggaattcaacattgctgttgagtttcatgcagtgccagtttttgctccggaaatcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattgnggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42930" stop="44165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43230" g_stop="43865" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E273556" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43230" e_stop="43865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGA</genome_strand>
        <mrna_strand>TGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGNGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543199" ref_strand="+" ref_description="SGN-E543199 [TUS-64-O7]">
      <seq>atttagtttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggagttcaacattgctgttgcgtttcatgcagtgccagtttttgctctggaaatcacttgggatatgcttgatgtaaggcctggtgaggctcaggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgcgaataaccctagagatggtctcattaggatgataaagtcactttgccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctcactaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcactgtggagcagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcaagatggcaggttttcagcaatatcctttgagctcttttgtgaattcagtgattaaggacctcatgaagcgttactcggatcattatacactggtggagcaagacggagctatgctgatatgctgtgggggtggaaggagcngaatctagtctctgcgtctgcttggttttaacgattacttcagaaacgaagctgtagttcattatgtggaaacagatggttagccttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42999" stop="44324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43299" g_stop="43987" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E543199" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43299" e_stop="43987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGC-----TG-T-T-GGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACT</genome_strand>
        <mrna_strand>ATTTAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAGTTCAACATTGCTGTTGCGTTTCATGCAGTGCCAGTTTTTGCTCTGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCAGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGCGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCACTTTGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCACTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCACTGTGGAGCAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCAAGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTTTGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGATCATTATACACTGGTGGAGCAAGACGGAGCTATGCTGATATGCTGTGGGGGTGGAAGGAGCNGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGA-TTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303937" ref_strand="+" ref_description="SGN-E303937 [cLEX-4-H19]">
      <seq>tttactttcacagtacgctcggggagatggattggctgcagttgccagacggctatcagcaatttctgaggagttcaacattgctgttgcgtgtcatgcagggccagattctgctctggaaatcacttgggatatgcttgatgtaaggcctggtgaggctcaggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgctaataaccctatagatggcctcattaggatgataaattcactttgccccaagatcgtcactttggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43003" stop="43883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43300" g_stop="43583" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E303937" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43300" e_stop="43583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGG</genome_strand>
        <mrna_strand>TTTACTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAGTTCAACATTGCTGTTGCGTGTCATGCAGGGCCAGATTCTGCTCTGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCAGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGCTAATAACCCTATAGATGGCCTCATTAGGATGATAAATTCACTTTGCCCCAAGATCGTCACTTTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543198" ref_strand="+" ref_description="SGN-E543198 [TUS-64-O7](-)">
      <seq>ttcatgcagtgccagtttttgctctggaaatcacttgggatatgcttgatgtaaggcctggtgaggctcaggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgcgaataaccctagagatggtctcattaggatgataaagtcactttgccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctcactaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcactgtggagcagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcaagatggcaggttttcagcaatatcctttgagctcttttgtgaattcagtgattaaggacctcatgaagcgttactcggatcattatacactggtggagcaagacggagctatgctgatatgctgtgggggtggaaggagcggaatctagtctctgcgtctgcttggttttaacgaattacttcagaaacgaagctgtagttcattatgtggaaacagatggttagccttcttttttattacttatccagacaataggattgatcaagtaattatactcgtgttatatagtttcaattttctgaaattttagtatataaaaatgctttatgtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43092" stop="44404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43392" g_stop="44099" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="767"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E543198" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43392" e_stop="44099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGC-----TG-T-T-GGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACG----AGTT---------A-C--T-GTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTA</genome_strand>
        <mrna_strand>TTCATGCAGTGCCAGTTTTTGCTCTGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCAGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGCGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCACTTTGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCACTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCACTGTGGAGCAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCAAGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTTTGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGATCATTATACACTGGTGGAGCAAGACGGAGCTATGCTGATATGCTGTGGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAATTACTTCAGAAACGAAGCTGTAGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTATCCAGACAATAGGATTGATCAAGTAATTATACTCGTGTTATATAGTTTCAATTTTCTGAAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231327" ref_strand="+" ref_description="SGN-E231327 [cLED-10-J13]">
      <seq>tcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtgattaaggacctcatgaagcgttactcggagcattatacactggtggagaaagacggagctatgctgttggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43122" stop="44238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43422" g_stop="43938" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E231327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43422" e_stop="43938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTG</genome_strand>
        <mrna_strand>TCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233726" ref_strand="+" ref_description="SGN-E233726 [cLED-14-E11]">
      <seq>tcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtgattaaggacctcatgaagcgttactcggagcattatacactggtggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43122" stop="44214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43422" g_stop="43914" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E233726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43422" e_stop="43914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAA</genome_strand>
        <mrna_strand>TCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240059" ref_strand="+" ref_description="SGN-E240059 [cLED-32-B24]">
      <seq>tcacttgggatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattgnggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43122" stop="44154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43422" g_stop="43854" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E240059" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43422" e_stop="43854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGT</genome_strand>
        <mrna_strand>TCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGNGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376974" ref_strand="+" ref_description="SGN-E376974 [TUS-20-M23]">
      <seq>gatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtgattaaggacctcatgaagcgttactcggagcattatacactggtggagaaagacggagctatgctgttggggtggaaggagcggaatctagtctctgcgtctgcttggttttaacgagttactgttcattatgtggaaacagatggttagccttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43130" stop="44324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43430" g_stop="44024" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E376974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43430" e_stop="44024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTT</genome_strand>
        <mrna_strand>GATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231918" ref_strand="+" ref_description="SGN-E231918 [cLED-7-F4]">
      <seq>gatatgcttgatgtaaggcctggtgaggctctggctgtaaactttcctttgcaacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagcgattaaggacctcatgaagcgttactcggagcattatacactggtggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43130" stop="44214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43430" g_stop="43914" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E231918" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43430" e_stop="43914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAA</genome_strand>
        <mrna_strand>GATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGCGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256270" ref_strand="+" ref_description="SGN-E256270 [cLEG-37-B16]">
      <seq>aaactttcctttgcatacttcaccacacccctgatgagagcgttgacgtgaataaccctagagatggtctcattaggatgataaagtcgcttagccccaagatagtcactttggtggagcaagaatcaaacacgaacacagctccatttctccctaggtttgtagaagctctagattactaccatgcaatgtttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtgattaaagacctcatgaagcgttactcggagcattatacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43168" stop="44205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43468" g_stop="43905" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E256270" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43468" e_stop="43905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCCTTTGCA-ACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACT</genome_strand>
        <mrna_strand>AAACTTTCCTTTGCATACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAAGACCTCATGAAGCGTTACTCGGAGCATTATACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285818" ref_strand="+" ref_description="SGN-E285818 [cLES-5-L11]">
      <seq>ttgagtccatagatgtgaccctactaagggacatgaaggagcggatcaatgtggaacagcactgtttggctagggatatagtgaatgtcatagcatgtgagggcaaggaaagagtagaacgtcacgagctattggggaagtggaaatccaggttcatgatggcaggttttcagcaatatcctttgagctcttatgtgaattcagtgattaaggacctcatgaagcgttactcggagcattatacactggtggagaaagacggagctatgctgttggggtggaaggagcggaatctagtctctgcgtctgcttggttttaacgagttactgttcattatgtggaaacagatggttagccttcttttttattacttaaccagacaataggattgatcaagtaattatactcatgttatgtagtttcaattttctgaaattttagttgtttatttttcaagttatcgtttgatattatttgttaaaacttataaacaattatatcttcgccttgatgattttgtgagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43359" stop="62263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43659" g_stop="44185" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44186" i_stop="45192" i_length="1007">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45193" g_stop="45207" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="542" r_length="15" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E285818" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43659" e_stop="44185"/>
          <exon e_start="45193" e_stop="45207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTCGTCCTTGATGATTTGTTGAGCAACTTTGGAGATTATATCCGGTCCTCGGTTGATACAAAGGTACATTAGCAGAAAATGAATAGAAAACTGCCCGGAGACCTCTCGGTGCTACCGGAATCCTGCCTGCTGCCGCTGCTTGTAAGGCATTATGGATATAGGGAGTTTAGATACTGAAACACTATCACAGATCTATTAGAGGAGAACACATTAAATTTGGTGGGTTTTTTTATATATACATATGTAGAAATATTAACACCTTGTTTGAATGATGATTATTAGAAAGTTATATTGTATGGTTAGTTCATATATAATATATGTTTTAATTGTTATTCAAATTTTATTATATTGATTTTTTAATATTTTATTCTCATTTTGTCTTTCTTATCTAATTCTATTTTATCTTTTATCTTATAATTACATGAGAACAATAAGATTTTGTTTCTATTTATATGTCAAGAAACTATATACATTTACCATTGTATCTTTATTTTGTATTCTCTTTAAGTCAAATTTTCAATGAATGACCTAAATTAATTTTGATTAATTAAATTGGGTGATGAATAAATTAATCATTTAGTTAAAAATCACAACAAATACCTATTTTATATTTTGACAAGCTAAATATATCAATAATATTCTCGAAAATTCCCAACAGATACTAATATGTGTCAATTTTGACAACTAATCAGGCTATTATGTTCCTAGTTTTTAGGTAAACTAATCAGGCTAATACGTGTTAACGTTCTAGAGGTTTTAAAAGTCGTTTTCGTAAAGTTCATTAATACTATCAATTAAAATTGAGCAAAAGTTGAGTTGAACAACAAATGTTCTTTTTTGCAACAAAAGACGGCACAAATGTATAAACTCTACACAATAACTAAGACTTAAATAATAGAATAATTACAGAGATCTAAATTATGCTAAATACATAATTATGATGTCCATGTATGTATATAATAAGAGAAACTATAACTTAAAATTGAAGGGAAACATAATGAGATTGAGCTGTCATTATGTTTCACTTGAACAGAGAAGAAAAAGAAAA</genome_strand>
        <mrna_strand>TTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTTCGCCTTGATGATTTTGTGAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376973" ref_strand="+" ref_description="SGN-E376973 [TUS-20-M23](-)">
      <seq>gatcaatgtggaacagccctgtttggctagggaaatagtgaatgtcatagcatgtgagggcaaagaaaaagtaaaacgtcccgagctattggggaagtggaaatccaggttcataatggcaggttttcaacaaaatcctttgagcttttatgtgaattcagtgattaaggacctcatgaagggttactcggagcattatacactggtggaaaaaaacggaactatgctgttggggtggaaagaacggaatttagtttttgggtttgcttggttttaaaaagttactgttcattatgtggaaacaaatggttagccttttttttttttacttaaccagccaataggattgatcaagtaattaaactcatgttatgtagtttcaattttttgaaattttagttgtttatttttcaagttatcgtttgatattatttgttaaaaattataaacaattatatttcgtccttgatgatttgttgggccactttggggattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43402" stop="62264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43702" g_stop="44199" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="45192" i_length="993">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.882" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45193" g_stop="45240" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="546" r_length="48" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E376973" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43702" e_stop="44199"/>
          <exon e_start="45193" e_stop="45240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTCGTCCTTGATGATTTGTTGAGCAACTTTGGAGATTATATCCGGTCCTCGGTTGATACAAAGGTACATTAGCAGAAAATGAATAGAAAACTGCCCGGAGACCTCTCGGTGCTACCGGAATCCTGCCTGCTGCCGCTGCTTGTAAGGCATTATGGATATAGGGAGTTTAGATACTGAAACACTATCACAGATCTATTAGAGGAGAACACATTAAATTTGGTGGGTTTTTTTATATATACATATGTAGAAATATTAACACCTTGTTTGAATGATGATTATTAGAAAGTTATATTGTATGGTTAGTTCATATATAATATATGTTTTAATTGTTATTCAAATTTTATTATATTGATTTTTTAATATTTTATTCTCATTTTGTCTTTCTTATCTAATTCTATTTTATCTTTTATCTTATAATTACATGAGAACAATAAGATTTTGTTTCTATTTATATGTCAAGAAACTATATACATTTACCATTGTATCTTTATTTTGTATTCTCTTTAAGTCAAATTTTCAATGAATGACCTAAATTAATTTTGATTAATTAAATTGGGTGATGAATAAATTAATCATTTAGTTAAAAATCACAACAAATACCTATTTTATATTTTGACAAGCTAAATATATCAATAATATTCTCGAAAATTCCCAACAGATACTAATATGTGTCAATTTTGACAACTAATCAGGCTATTATGTTCCTAGTTTTTAGGTAAACTAATCAGGCTAATACGTGTTAACGTTCTAGAGGTTTTAAAAGTCGTTTTCGTAAAGTTCATTAATACTATCAATTAAAATTGAGCAAAAGTTGAGTTGAACAACAAATGTTCTTTTTTGCAACAAAAGACGGCACAAATGTATAAACTCTACACAATAACTAAGACTTAAATAATAGAATAATTACAGAGATCTAAATTATGCTAAATACATAATTATGATGTCCATGTATGTATATAATAAGAGAAACTATAACTTAAAATTGAAGGGAAACATAATGAGATTGAGCTGTCATTATGTTTCACTTGAACAGAGAAGAAAAAGAAAACAGAATGAGCCAAGCTAAACACATTTATAAATG</genome_strand>
        <mrna_strand>GATCAATGTGGAACAGCCCTGTTTGGCTAGGGAAATAGTGAATGTCATAGCATGTGAGGGCAAAGAAAAAGTAAAACGTCCCGAGCTATTGGGGAAGTGGAAATCCAGGTTCATAATGGCAGGTTTTCAACAAAATCCTTTGAGCTTTTATGTGAATTCAGTGATTAAGGACCTCATGAAGGGTTACTCGGAGCATTATACACTGGTGGAAAAAAACGGAACTATGCTGTTGGGGTGGAAAGAACGGAATTTAGTTTTTGGGTTTGCTTGGTTTTAAAAAGTTACTGTTCATTATGTGGAAACAAATGGTTAGCCTTTTTTTTTTTTACTTAACCAGCCAATAGGATTGATCAAGTAATTAAACTCATGTTATGTAGTTTCAATTTTTTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAAATTATAAACAATTATATTTCGTCCTTGATGATTTGTTGGGCCACTTTGGGGATTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309620" ref_strand="+" ref_description="SGN-E309620 [cLEY-26-H19]">
      <seq>gctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcattctgttttctttttcttctctgttcaagtgaaacataatgacagctcaatctcattatgtttcccttcaattttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45722" stop="44836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45422" g_stop="45136" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="288" polyA_stop="306"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E309620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45422" e_stop="45136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCTGTTTTCTTTTTCTTCTCTGTTCAAGTGAAACATAATGACAGCTCAATCTCATTATGTTTCCCTTCAATTTTAA</genome_strand>
        <mrna_strand>GCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCTGTTTTCTTTTTCTTCTCTGTTCAAGTGAAACATAATGACAGCTCAATCTCATTATGTTTCCCTTCAATTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733681" ref_strand="+" ref_description="SGN-E733681 [LB10CF08]">
      <seq>gtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatttttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47083" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46783" g_stop="46453" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45209" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="852" r_length="521" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E733681" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46783" e_stop="46453"/>
          <exon e_start="45729" e_stop="45209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCT</genome_strand>
        <mrna_strand>GTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATTTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552474" ref_strand="+" ref_description="SGN-E552474 [cTSB-4-A22]">
      <seq>ccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctnannnnnannnnnnnnnanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46872" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46572" g_stop="46453" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45209" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="641" r_length="521" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="667"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E552474" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46572" e_stop="46453"/>
          <exon e_start="45729" e_stop="45209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCT</genome_strand>
        <mrna_strand>CCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTNANNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372134" ref_strand="+" ref_description="SGN-E372134 [TUS-30-D20](-)">
      <seq>taaatttccaaaaaaaaaaaaaaaaaaaactcgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaaaaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaaaaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgggtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggttgtttttgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttaaaagttttgttaaggacccttgcttacccaactttgccatttataaatgtgtttagcttggctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="90866" stop="44914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47098" g_stop="47071" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47070" i_stop="46549" i_length="522">
            <donor d_prob="0.813" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46548" g_stop="46453" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="124" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="640" r_length="516" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="642" polyA_stop="670"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E372134" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47098" e_stop="47071"/>
          <exon e_start="46548" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTTGATCAACTCAAAATATAAAGGCGAATATCGAATGACTACTTAGCATTATTTGGGCTGCGTATTGGGTCCTTATTACAAATACAAGAGGCCCAGCCCATAAACTTGTTACGGCCCTCCTCCCTCTAAAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>TAAATTTCCAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAAAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAAAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGGGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTTGTTTTTGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAAAAGTTTTGTTAAGGACCCTTGCTTACCCAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745507" ref_strand="+" ref_description="SGN-E745507 [GI|47105281]">
      <seq>gagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaagggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggcccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47209" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46910" g_stop="46453" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="968" r_length="510" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="969" polyA_stop="983"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E745507" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>974</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46910" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>GAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAGGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAA------GCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706622" ref_strand="+" ref_description="SGN-E706622 [FA30BH08]">
      <seq>gacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggaatttgagtattcagctactgtcatctttatactaaattaagtttaagttttgttgggaatataattttaaaagttttgttaaggaacctttgctaacacaacttttgccatttaaaaatgggttaagcctggcttccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47208" stop="44915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46908" g_stop="46453" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="975" r_length="519" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E706622" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>972</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46908" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGG-ATATTATTTTAGAAGTTTTGTTAAGG-ACCCTTGCTTACACAAC-TTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>GACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGAATTTGAGTATTCAGCTACTGTCATCTTTATACTAAATTAAGTTTAAGTTTTGTTGGGAATATAATTTTAAAAGTTTTGTTAAGGAACCTTTGCTAACACAACTTTTGCCATTTAAAAATGGGTTAAGCCTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553657" ref_strand="-" ref_description="SGN-E553657 [cTSC-1-M6]">
      <seq>ccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggttgtttttgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47106" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46806" g_stop="46453" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="870" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="871" polyA_stop="882"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E553657" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553657" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46806" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>CCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTTGTTTTTGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729976" ref_strand="+" ref_description="SGN-E729976 [LA22CF12]">
      <seq>aggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47037" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46737" g_stop="46453" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="801" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E729976" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46737" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>AGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713041" ref_strand="+" ref_description="SGN-E713041 [FB06CC03]">
      <seq>cctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46997" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46697" g_stop="46453" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="761" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="762" polyA_stop="780"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E713041" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46697" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>CCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694431" ref_strand="+" ref_description="SGN-E694431 [LH_Ea03O13](-)">
      <seq>aagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgctgaaagctggtaacgcatcccccaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgcaagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgcggacaagctgctgctacagctgccaaagccgccaagccctaagatattagttttgtgttactgttttctttgttgtgtttggattttgagtattcagctactgtcatttttatactaagttaagtttaaattttgttgggatattattttagaagttttgttaaggacccttgcttacacatcaatggcatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46985" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46685" g_stop="46453" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="749" r_length="516" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="750" polyA_stop="766"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E694431" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46685" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>AAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTGAAAGCTGGTAACGCATCCCCCAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCAAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGCGGACAAGCTGCTGCTACAGCTGCCAAAGCCGCCAAGCCCTAAGATATTAGTTTTGTGTTACTGTTTTCTTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATTTTTATACTAAGTTAAGTTTAAATTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACATCAATGGCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551864" ref_strand="+" ref_description="SGN-E551864 [cTSB-2-B20]">
      <seq>ccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctnanannnnnaaaanaanaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46872" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46572" g_stop="46453" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45214" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="636" r_length="516" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="653" polyA_stop="667"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E551864" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46572" e_stop="46453"/>
          <exon e_start="45729" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>CCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715268" ref_strand="+" ref_description="SGN-E715268 [FB13DC02]">
      <seq>gtctagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45985" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45685" g_stop="45214" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="484"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E715268" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45685" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>GTCTAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E219180" ref_strand="+" ref_description="SGN-E219180 [cLEL-11-A18](-)">
      <seq>aatgcttaaagctggtaacgcatatcacaaataccgtgttagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45936" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45636" g_stop="45214" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="423" polyA_stop="441"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E219180" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45636" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>AATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTT-AGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224259" ref_strand="+" ref_description="SGN-E224259 [cLEL-19-P10](-)">
      <seq>aacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45920" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45620" g_stop="45214" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="426"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E224259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45620" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>AACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351156" ref_strand="+" ref_description="SGN-E351156 [cTOS-6-C13]">
      <seq>acgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45919" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45619" g_stop="45214" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="425"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E351156" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45619" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>ACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224188" ref_strand="+" ref_description="SGN-E224188 [cLEL-19-P10](-)">
      <seq>tgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45900" stop="44914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45600" g_stop="45214" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="406"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E224188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45600" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>TGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220099" ref_strand="+" ref_description="SGN-E220099 [cLEL-12-G23](-)">
      <seq>ggttcgtggtgttgctatgaatccntgtggagcatcctcatggtggtggtaaccatcaaacatattggtcatgccnagtactgtgcgtcgtgatgcaccacnctgggcaaaaggtgtggtcttatcgcagccaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45876" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45576" g_stop="45214" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="370" polyA_stop="393"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E220099" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45576" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGTGGTGTTGCTATGAATCC-TGTGGAGCATCCTCATGGTGGTGGTAACCATC-AACATATTGGTCATGCC-AGTACTGTGCGTCGTGATGCACCAC-CTGGGCAAAAGGT-TGGTCTTATCGCAG-CAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>GGTTCGTGGTGTTGCTATGAATCCNTGTGGAGCATCCTCATGGTGGTGGTAACCATCAAACATATTGGTCATGCCNAGTACTGTGCGTCGTGATGCACCACNCTGGGCAAAAGGTGTGGTCTTATCGCAGCCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222370" ref_strand="+" ref_description="SGN-E222370 [cLEL-16-H12](-)">
      <seq>ctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctcataaaaaaataaaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45853" stop="44912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45553" g_stop="45214" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="373"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E222370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45553" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>CTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222772" ref_strand="+" ref_description="SGN-E222772 [cLEL-16-D11](-)">
      <seq>tggtggtggtaaccatcaacatattggtcatgccagtaactgtgggtcgtaatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggtctggtcgtcttcagtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaaggtttgttgggatattattttaaaagttttgttaaggacccctgcttacacaactttgccatttataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45837" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45537" g_stop="45214" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="345"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E222772" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45537" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTGGTAACCATCAACATATTGGTCATGCCAGT-ACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTC-GTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>TGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTAACTGTGGGTCGTAATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGTCTGGTCGTCTTCAGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGGTTTGTTGGGATATTATTTTAAAAGTTTTGTTAAGGACCCCTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227397" ref_strand="+" ref_description="SGN-E227397 [cLEL-30-G14](-)">
      <seq>ggcacgaggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatccataaatgtgtttagcttggctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45812" stop="44913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45520" g_stop="45214" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="307" polyA_stop="323"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E227397" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45520" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>GGCA-CGAGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATCCATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229309" ref_strand="+" ref_description="SGN-E229309 [cLEL-4-B1](-)">
      <seq>aacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccctgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttgggatattattttagaagttttgttaaggacccttgcttacacaactttgccatttataaatgtgtttagcttggctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45820" stop="44914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45520" g_stop="45214" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="341"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E229309" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45520" e_stop="45214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</genome_strand>
        <mrna_strand>AACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCCTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706630" ref_strand="+" ref_description="SGN-E706630 [FA30CA04]">
      <seq>gtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagttttaagtttgttgggatattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47188" stop="44981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46888" g_stop="46453" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45281" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="885" r_length="449" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E706630" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46888" e_stop="46453"/>
          <exon e_start="45729" e_stop="45281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATT</genome_strand>
        <mrna_strand>GTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTTAAGTTTGTTGGGATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226652" ref_strand="+" ref_description="SGN-E226652 [cLEL-26-B21](-)">
      <seq>tggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaagaaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagttttgttcgcatattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45960" stop="44983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45660" g_stop="45284" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="378" polyA_stop="394"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E226652" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45660" e_stop="45284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATT</genome_strand>
        <mrna_strand>TGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGAAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTCGCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290971" ref_strand="+" ref_description="SGN-E290971 [cLET-8-M8]">
      <seq>ggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgacaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcaccaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttggtgggtttggattttgagtattcagctactgtcatctttatactaagttaagtttaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46034" stop="44997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45729" g_stop="45297" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="444" r_length="433" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E290971" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45729" e_stop="45297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTT</genome_strand>
        <mrna_strand>GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGACAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCACCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGGTGGGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708318" ref_strand="+" ref_description="SGN-E708318 [FA35BG06]">
      <seq>cacatacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatactaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47218" stop="45010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46918" g_stop="46453" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45310" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="886" r_length="420" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E708318" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46918" e_stop="46453"/>
          <exon e_start="45729" e_stop="45310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAG</genome_strand>
        <mrna_strand>CACATACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701950" ref_strand="+" ref_description="SGN-E701950 [FA17BF01]">
      <seq>aaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatctttatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47203" stop="45012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46903" g_stop="46453" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45312" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="869" r_length="418" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E701950" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46903" e_stop="46453"/>
          <exon e_start="45729" e_stop="45312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTA</genome_strand>
        <mrna_strand>AAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704624" ref_strand="+" ref_description="SGN-E704624 [FA24DC02]">
      <seq>aatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctngccaagctgacaaggcctaagatattagtttttgtgtactgttttccttgttgtgttgggattttgagtattcagctactgtcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47193" stop="45019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46893" g_stop="46453" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45319" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="852" r_length="411" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E704624" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46893" e_stop="46453"/>
          <exon e_start="45729" e_stop="45319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTT</genome_strand>
        <mrna_strand>AATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTNGCCAAGCTGACAAGGCCTAAGATATTAGTTTTTGTGTACTGTTTTCCTTGTTGTGTTGGGATTTTGAGTATTCAGCTACTGTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721881" ref_strand="+" ref_description="SGN-E721881 [FC15CC11]">
      <seq>gcatttcttcctctattcccaaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcaaaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagtattcagctactgtcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47236" stop="45020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46937" g_stop="46453" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45320" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="895" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E721881" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46937" e_stop="46453"/>
          <exon e_start="45729" e_stop="45320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCT</genome_strand>
        <mrna_strand>GCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAAAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340695" ref_strand="+" ref_description="SGN-E340695 [cTOF-1-D18]">
      <seq>taatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgttgtgtttggattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47082" stop="45038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46782" g_stop="46453" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45338" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="722" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E340695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46782" e_stop="46453"/>
          <exon e_start="45729" e_stop="45338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGT</genome_strand>
        <mrna_strand>TAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705120" ref_strand="+" ref_description="SGN-E705120 [FA26AH07]">
      <seq>caataaaggtgtgatnagagnanaangnaagggagnaggctcccttttaaaatctcanantcatnancgnaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggccatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaagatattagttttgtgttactgttttccttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47185" stop="45055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46894" g_stop="46453" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45355" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="816" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E705120" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46894" e_stop="46453"/>
          <exon e_start="45729" e_stop="45355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTT</genome_strand>
        <mrna_strand>CAAT-AAAGGTGTGATNAGAGNANAANGNAAGGGAGNAGGCTCCCTTTTAAAATCTCANANTCATNANCGNAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGCCATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712279" ref_strand="+" ref_description="SGN-E712279 [FB04BF08]">
      <seq>gctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaaactgacaaggcctaagatattagttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47155" stop="45073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46855" g_stop="46453" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45373" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="760" r_length="357" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E712279" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46855" e_stop="46453"/>
          <exon e_start="45729" e_stop="45373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGT</genome_strand>
        <mrna_strand>GCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAACTGACAAGGCCTAAGATATTAGTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700243" ref_strand="+" ref_description="SGN-E700243 [FA12CC10]">
      <seq>attcccaaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggcctaaaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47223" stop="45080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46923" g_stop="46453" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45380" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="821" r_length="350" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E700243" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46923" e_stop="46453"/>
          <exon e_start="45729" e_stop="45380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTA</genome_strand>
        <mrna_strand>ATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708084" ref_strand="+" ref_description="SGN-E708084 [FA34DC05]">
      <seq>ccaattttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcaacaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47215" stop="45088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46917" g_stop="46453" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45393" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="802" r_length="337" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E708084" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46917" e_stop="46453"/>
          <exon e_start="45729" e_stop="45393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAG</genome_strand>
        <mrna_strand>CCAATTTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAACAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700848" ref_strand="+" ref_description="SGN-E700848 [FA14BD03]">
      <seq>aacgctccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgacaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47203" stop="45091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46903" g_stop="46453" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45393" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="788" r_length="337" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E700848" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46903" e_stop="46453"/>
          <exon e_start="45729" e_stop="45393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAG</genome_strand>
        <mrna_strand>AACGCTCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706188" ref_strand="+" ref_description="SGN-E706188 [FA29BA10]">
      <seq>cgttaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaagaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47215" stop="45096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46919" g_stop="46453" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45396" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="801" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E706188" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46919" e_stop="46453"/>
          <exon e_start="45729" e_stop="45396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGAC</genome_strand>
        <mrna_strand>CGTTAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAAGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321450" ref_strand="+" ref_description="SGN-E321450 [cTOB-23-O20]">
      <seq>gccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctacatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgacaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagacgaactgctggcctaacgttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgagcgaaaagttggtcttatcgcagcaaggaggactggtcgtcttcntaggcaagctgctgctactgctgccaaagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47198" stop="45097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46898" g_stop="46453" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45397" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="779" r_length="333" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E321450" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46898" e_stop="46453"/>
          <exon e_start="45729" e_stop="45397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGA</genome_strand>
        <mrna_strand>GCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTACATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGACAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGACGAACTGCTGGCCTAACGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGAGCGAAAAGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCNTAGGCAAGCTGCTGCTACTGCTGCCAAAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697575" ref_strand="+" ref_description="SGN-E697575 [FA03BG09]">
      <seq>cgattcccaaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47225" stop="45098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46925" g_stop="46453" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45398" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="805" r_length="332" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E697575" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46925" e_stop="46453"/>
          <exon e_start="45729" e_stop="45398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTG</genome_strand>
        <mrna_strand>CGATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727629" ref_strand="+" ref_description="SGN-E727629 [LA15BA10]">
      <seq>ccctaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47220" stop="45102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46920" g_stop="46453" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45402" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="796" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E727629" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46920" e_stop="46453"/>
          <exon e_start="45729" e_stop="45402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAA</genome_strand>
        <mrna_strand>CCCTAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718769" ref_strand="+" ref_description="SGN-E718769 [FC05DA06]">
      <seq>gttacggccctcctccctctaaaaaccctaactccctttcttctttattccatttcttcctctattcccaaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcaaaaggagttgttcgttgctgcaaaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcaaatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47286" stop="45103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46986" g_stop="46453" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45403" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="861" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E718769" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46986" e_stop="46453"/>
          <exon e_start="45729" e_stop="45403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACGGCCCTCCTCCCTCTAAAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAA</genome_strand>
        <mrna_strand>GTTACGGCCCTCCTCCCTCTAAAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAAAAGGAGTTGTTCGTTGCTGCAAAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAAATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724551" ref_strand="+" ref_description="SGN-E724551 [FC24BH01]">
      <seq>gcggccaaatcggccgaaatgattccatttcttcctctattcccaaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcaaaaggagttgttcgttgctgcaaaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcaaatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttatcgcagcaaggaggactggtcgtcttcgtgggcaagctgctgctactgctgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47242" stop="45103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46940" g_stop="46453" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="509" r_length="488" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45403" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="836" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E724551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46940" e_stop="46453"/>
          <exon e_start="45729" e_stop="45403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAA</genome_strand>
        <mrna_strand>ATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAAAAGGAGTTGTTCGTTGCTGCAAAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAAATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709379" ref_strand="+" ref_description="SGN-E709379 [FA51CH10]">
      <seq>gacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaatggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcataccacaaataccgcgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtctttattgcaacaaagaggactggtcctctttcgtgggcaaactgctgctactgctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47208" stop="45105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46908" g_stop="46453" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45405" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="783" r_length="327" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E709379" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46908" e_stop="46453"/>
          <exon e_start="45729" e_stop="45405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTC-TTATCGCAGCAAGGAGGACTGGTCGTC-TTCGTGGGCAAGCTGCTGCTACTGCTGCC</genome_strand>
        <mrna_strand>GACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAATGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATACCACAAATACCGCGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTTATTGCAACAAAGAGGACTGGTCCTCTTTCGTGGGCAAACTGCTGCTACTGCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690591" ref_strand="+" ref_description="SGN-E690591 [LH_Ea03O13]">
      <seq>cactttcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgctgaaagctggtaacgcataccacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgcaagtactgtgcgtcgtgatgcaccacctgggcaaaaggttggtcttattgcagcaaggaggactggtcgtctttccgaacaagctgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47187" stop="45132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46892" g_stop="46453" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45414" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="756" r_length="316" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E690591" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46892" e_stop="46453"/>
          <exon e_start="45729" e_stop="45414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCT</genome_strand>
        <mrna_strand>CACTTTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTGAAAGCTGGTAACGCATACCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCAAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATTGCAGCAAGGAGGACTGGTCGTCTTTCCGAACAAGCTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285556" ref_strand="+" ref_description="SGN-E285556 [cLES-10-L2]">
      <seq>tactgtgggaaaaaagctatgtgatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacanataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatgcaccacctgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="46928" stop="45171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46628" g_stop="46453" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45471" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="434" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E285556" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46628" e_stop="46453"/>
          <exon e_start="45729" e_stop="45471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAA</genome_strand>
        <mrna_strand>TACTGTGGGAAAAAAGCT-ATGTGATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACANATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710734" ref_strand="+" ref_description="SGN-E710734 [FA56CB08]">
      <seq>caaaaacttatacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacacaaattattcatgatccaagtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcacaaggagttgttcgttgctgcataagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaagagctgttgtttgtaatgttgagcataaagatggtgaccgtggtgtttttgctatatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactatgattaagcttccatctggatccaagaatattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggctcgtggtgttgctatgaatcctgtggagcatcctcatggtggaggtaaccatcaacatattggtcatgcccagtactgtgcgtcgtgatgcaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47218" stop="45179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46918" g_stop="46453" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45479" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="718" r_length="252" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E710734" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46918" e_stop="46453"/>
          <exon e_start="45729" e_stop="45479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATG-CCAGTACTGTGCGTCGTGATGCACCAC</genome_strand>
        <mrna_strand>CAAAAACTTATACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACACAAATTATTCATGATCCAAGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCACAAGGAGTTGTTCGTTGCTGCATAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAAGAGCTGTTGTTTGTAATGTTGAGCATAAAGATGGTGACCGTGGTGTTTTTGCTATATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAATATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGCTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGAGGTAACCATCAACATATTGGTCATGCCCAGTACTGTGCGTCGTGATGCACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328118" ref_strand="+" ref_description="SGN-E328118 [cTOC-22-D16]">
      <seq>aacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactgtgcgtcgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47214" stop="45185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46914" g_stop="46453" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45485" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="707" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E328118" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46914" e_stop="46453"/>
          <exon e_start="45729" e_stop="45485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATG</genome_strand>
        <mrna_strand>AACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211317" ref_strand="+" ref_description="SGN-E211317 [cLEC-70-L19]">
      <seq>gtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttactgaaattattcatgatccatgtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtggaaaaaaagctaatctaatggttggtaatgtgcttgcactcacatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggagattttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactatgattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcacgttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggctcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatgccagtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47183" stop="45197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46883" g_stop="46453" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45497" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="664" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E211317" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46883" e_stop="46453"/>
          <exon e_start="45729" e_stop="45497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTG</genome_strand>
        <mrna_strand>GTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACTGAAATTATTCATGATCCATGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGAAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCACATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGAGATTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCACGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGCTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245326" ref_strand="+" ref_description="SGN-E245326 [cLEF-44-P19]">
      <seq>gaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47054" stop="45206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46754" g_stop="46453" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45506" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="526" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E245326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46754" e_stop="46453"/>
          <exon e_start="45729" e_stop="45506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATG</genome_strand>
        <mrna_strand>GAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328078" ref_strand="+" ref_description="SGN-E328078 [cTOC-22-D21]">
      <seq>aacttagacagaaggagccgaaatgggtcgtgtgatcacagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgatgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagacataaccctgataacggaacaactaggattaagcttccatctgtatccaagaagattgtgcctagtggatgtcgagccatgattggtcacgttgctggcggaggaagaactgagaaaccaatgcttatagctggtaacgcatatcacaaataccgtgttaacaggaactgctggcctaaggttcgagatgttgctatgaatcctgtggagcatcctcatggtggtggtaaccatcaacatattggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47214" stop="45208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46914" g_stop="46453" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45508" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="684" r_length="222" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E328078" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46914" e_stop="46453"/>
          <exon e_start="45729" e_stop="45508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCA</genome_strand>
        <mrna_strand>AACTTAGACAGAAGGAGCCGAAATGGGTCGTGTGATCACAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGATGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGACATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGTATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCACGTTGCTGGCGGAGGAAGAACTGAGAAACCAATGCTTATAGCTGGTAACGCATATCACAAATACCGTGTTAACAGGAACTGCTGGCCTAAGGTTCGAGATGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257236" ref_strand="+" ref_description="SGN-E257236 [cLEG-46-A13]">
      <seq>cgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcacgttgctggtggacgaagaactgagaaacaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtgttgctatgaatcctgtggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47196" stop="45244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46896" g_stop="46453" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45544" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="629" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E257236" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46896" e_stop="46453"/>
          <exon e_start="45729" e_stop="45544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCA</genome_strand>
        <mrna_strand>CGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCACGTTGCTGGTGGACGAAGAACTGAGAAA-CAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347781" ref_strand="+" ref_description="SGN-E347781 [cTOF-26-H13]">
      <seq>ggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttccgtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccatgtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcataaggagttgttcgttgctgcacaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaagagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaataagattgtgcctagtggatgtcgagccatgattggtcaagttgctggtggacgaagaactganaaaccaatgcttatagctggtaacgcatatcacacataccgtgttaacatgaactgctggcctaatgttacatgtgttgctatgaatcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47189" stop="45251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46889" g_stop="46453" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45550" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="617" r_length="180" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E347781" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46889" e_stop="46453"/>
          <exon e_start="45729" e_stop="45550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGT</genome_strand>
        <mrna_strand>GGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCCGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCATGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCATAAGGAGTTGTTCGTTGCTGCACAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAAGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAATAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAAGTTGCTGGTGGACGAAGAACTGANAAACCAATGCTTATAGCTGGTAACGCATATCACACATACCGTGTTAACATGAACTGCTGGCCTAATGTTACATGTGTTGCTATGAATCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377676" ref_strand="+" ref_description="SGN-E377676 [TUS-20-A20]">
      <seq>ttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgttaagaggaactgctggcctaaggttcgtggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47211" stop="45266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46911" g_stop="46453" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45566" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="623" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E377676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46911" e_stop="46453"/>
          <exon e_start="45729" e_stop="45566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTG</genome_strand>
        <mrna_strand>TTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299568" ref_strand="+" ref_description="SGN-E299568 [cLEW-20-M22]">
      <seq>cgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaagttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccgtgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47196" stop="45296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46896" g_stop="46453" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45596" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="578" r_length="134" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E299568" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46896" e_stop="46453"/>
          <exon e_start="45729" e_stop="45596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTA</genome_strand>
        <mrna_strand>CGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAAGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312366" ref_strand="+" ref_description="SGN-E312366 [cTOA-5-J19]">
      <seq>aaatgggtcgtgtgatcagagcacaacgtaagggaggaggctccgtcttcaaatctcacactcatcagcgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaataccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47194" stop="45301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46894" g_stop="46453" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45601" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="571" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E312366" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46894" e_stop="46453"/>
          <exon e_start="45729" e_stop="45601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCG</genome_strand>
        <mrna_strand>AAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGGAGGCTCCGTCTTCAAATCTCACACTCATCAGCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297491" ref_strand="+" ref_description="SGN-E297491 [cLET-28-C8]">
      <seq>cttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcacaaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47212" stop="45302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46912" g_stop="46453" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45602" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="588" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E297491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46912" e_stop="46453"/>
          <exon e_start="45729" e_stop="45602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACC</genome_strand>
        <mrna_strand>CTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276428" ref_strand="+" ref_description="SGN-E276428 [cLEN-17-F23]">
      <seq>gatcagagctcaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgcatatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47181" stop="45308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46881" g_stop="46453" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45608" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="551" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E276428" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46881" e_stop="46453"/>
          <exon e_start="45729" e_stop="45608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACA</genome_strand>
        <mrna_strand>GATCAGAGCTCAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319626" ref_strand="+" ref_description="SGN-E319626 [cTOB-12-I21]">
      <seq>gtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcangttgctggtggaggaagaactgagaaaccaatgcttaaagctggtaacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47188" stop="45315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46888" g_stop="46453" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45615" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="551" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E319626" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46888" e_stop="46453"/>
          <exon e_start="45729" e_stop="45615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCA</genome_strand>
        <mrna_strand>GTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCANGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268656" ref_strand="+" ref_description="SGN-E268656 [cLEM-9-K19]">
      <seq>tcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaagttgctggtggaggaagaactgagaaaccaatgcttaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47179" stop="45324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46879" g_stop="46453" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45624" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="533" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E268656" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46879" e_stop="46453"/>
          <exon e_start="45729" e_stop="45624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCT</genome_strand>
        <mrna_strand>TCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAAGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210362" ref_strand="+" ref_description="SGN-E210362 [cLEC-35-P11]">
      <seq>acttatacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcacggttccgctcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaagtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcacaaggagttgttctgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggcaatgtgcttgcactcagatctatccctgaaggagctgctgattgcaatgttgagcataaagttggtgaccgtggtgtctttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgatcggtcaggatgctggtggaggaagaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47213" stop="45343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46913" g_stop="46453" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45642" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="550" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E210362" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46913" e_stop="46453"/>
          <exon e_start="45729" e_stop="45642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTC-GTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAG</genome_strand>
        <mrna_strand>ACTTATACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCACGGTTCCGCTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAAGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCACAAGGAGTTGTTCTGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGCAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGCTGATTGCAATGTTGAGCATAAAGTTGGTGACCGTGGTGTCTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATCGGTCAGGATGCTGGTGGAGGAAGAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255714" ref_strand="+" ref_description="SGN-E255714 [cLEG-36-D19]">
      <seq>gccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaagttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaagagttgttcgttgctgcagaaaggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcangttgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47198" stop="45357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46898" g_stop="46453" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45657" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="519" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E255714" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46898" e_stop="46453"/>
          <exon e_start="45729" e_stop="45657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGT</genome_strand>
        <mrna_strand>GCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAAGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAAGAGTTGTTCGTTGCTGCAGAAAGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCANGTTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275059" ref_strand="+" ref_description="SGN-E275059 [cLEN-9-E3]">
      <seq>ttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtcaggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47211" stop="45362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46911" g_stop="46453" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45662" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="527" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E275059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46911" e_stop="46453"/>
          <exon e_start="45729" e_stop="45662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTG</genome_strand>
        <mrna_strand>TTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313862" ref_strand="+" ref_description="SGN-E313862 [cTOA-17-D21]">
      <seq>ccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47197" stop="45368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46897" g_stop="46453" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45668" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="507" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E313862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46897" e_stop="46453"/>
          <exon e_start="45729" e_stop="45668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTC</genome_strand>
        <mrna_strand>CCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301565" ref_strand="+" ref_description="SGN-E301565 [cLEW-23-H21]">
      <seq>tcgtgtgatcagagcacaacgtaagggagcaggctccgtgttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaactaggattaagcttccatctggatccaagaagattgtgcctagtggatgtcgagccatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47187" stop="45373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46887" g_stop="46453" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45729" g_stop="45673" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="492" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E301565" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46887" e_stop="46453"/>
          <exon e_start="45729" e_stop="45673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAGGTATGTTGTTACCTCTTTATCGTTTTTTTGTCATTGATTAATCTAAATTTTATTTGTATTTTGGTTTATTGGATACTTAGAAAAGGAATTTCACTATTGGATGTATAATTTTAGAAATGATTTAGTATTTGAGTGAATTGACTTTAACACCTAGAATTCAAGCGTAGTTGATTTGATAATTGCTCCGGTATATGTGATAGCTTAGTATAATCGTAAGTTTGCTTGGAAAGCTTTAATATGCTTGACTTGTAAAGTTTGCTCAGTTTCAAGCAACTGTGCACTGTACTTTATCTGTTTTTTTTCGTGTGAATTACAATTGGAACTTTGTGCATTTGCATTTGATGAAGCATAGTTACTGTTAATTTAGCATCCATGAAGCATACCTGTTTAGTGTTATGGGATAGTTTTGGTGTCGTGATGATTATATGTAGGAAATTCAGGTTAATGGCGTTTTTTATGCTTACTTCTTATTTCCTTTTGCATAAGAAGAATATATCGTAATCTGCTTCATTCGAAGTAGTGAATAAAGTCTGGATATGCTGAAAGGCATACCCGTTGATCAAAATTACATTGATTTTAACTTGACCGTTTGCGTTTCACATGAAACGAAGTAGAAGTATGAGTGTTCGTGTATTAGTATTCTGTTATGATGTTATATTGCGGTTATCAAGTCTATGGAGTTGATTTTTGAAGTTTGCTCTATTTAATTTTTTCTTGTATTAGGATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGAT</genome_strand>
        <mrna_strand>TCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTGTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313988" ref_strand="+" ref_description="SGN-E313988 [cTOA-19-B6]">
      <seq>aaatgggttttgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgataacggaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47194" stop="46156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46894" g_stop="46456" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E313988" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46894" e_stop="46456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAAC</genome_strand>
        <mrna_strand>AAATGGGTTTTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271378" ref_strand="+" ref_description="SGN-E271378 [cLEM-5-O7]">
      <seq>ccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgctattgttatcagtcataaccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47197" stop="46167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46897" g_stop="46467" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E271378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46897" e_stop="46467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGAT</genome_strand>
        <mrna_strand>CCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233200" ref_strand="+" ref_description="SGN-E233200 [cLED-6-F10]">
      <seq>ttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaatggatgtatactggtcagtgtatttactgtgggaaaaaagctaatctaatggttggtaatgtgctggcactcagatctatccctgaagganctgttggttgtaatgttgagcataaagttggtgaccggggtgtgtttgctagatgctgtggtgattatgctattgttatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47211" stop="46179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46911" g_stop="46479" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E233200" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46911" e_stop="46479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGT</genome_strand>
        <mrna_strand>TTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAATGGATGTATACTGGTCAGTGTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTGGCACTCAGATCTATCCCTGAAGGANCTGTTGGTTGTAATGTTGAGCATAAAGTTGGTGACCGGGGTGTGTTTGCTAGATGCTGTGGTGATTATGCTATTGTTATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288639" ref_strand="+" ref_description="SGN-E288639 [cLES-8-D13]">
      <seq>gccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcataaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttgggaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaaagtggtgaccgtggtgtttttgctagatgctctggtgattatgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47198" stop="46188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46898" g_stop="46488" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E288639" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46898" e_stop="46488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATT</genome_strand>
        <mrna_strand>GCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCATAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGGAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAAGTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288909" ref_strand="+" ref_description="SGN-E288909 [cLES-17-G13]">
      <seq>cagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttttgctagatgctctggtgattatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47206" stop="46190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46906" g_stop="46490" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E288909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46906" e_stop="46490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTA</genome_strand>
        <mrna_strand>CAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240833" ref_strand="+" ref_description="SGN-E240833 [cLED-24-P1]">
      <seq>gtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatcccatgaggagctgttgtttgtaatgttgagcataaagttggtgaccgtggtgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47183" stop="46216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46883" g_stop="46516" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E240833" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46883" e_stop="46516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTT</genome_strand>
        <mrna_strand>GTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCATGAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336452" ref_strand="+" ref_description="SGN-E336452 [cTOE-4-K16]">
      <seq>tgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcactnnnnttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtaggggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggagttgttcgttgctgcagaagggatgtatactggtcagtttatttactgtgggaaaaaagctaatctaatggttggtaatgtgcttgcactcagatctatccctgaaggagctgttgtttgtaatgttgagcataaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47191" stop="46234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46891" g_stop="46534" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E336452" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46891" e_stop="46534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGT</genome_strand>
        <mrna_strand>TGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTNNNNTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214775" ref_strand="+" ref_description="SGN-E214775 [cLEC-79-C14]">
      <seq>aaaaccctaactccctttcttctttattccatttcttcctctattcccaaaaacttagacagaaggcgccgaaatgggtcgtgtgatcagagcacaacgtaagggagcaggctccgtcttcaaatctcacactcatcaccgcaagggacctgcaaggttccgttcacttgatttcggtgaacgtaatggttatctcaaaggtgttgttacagaaattattcatgatccaggtacgggtgcaccattggcaaggatgacattccgtcatcctttccgttacaagcatcagaaggaggtgttcgttgctgcagaagggatgtatactgggccagttatttactgtgggaaaaaaactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47265" stop="46308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46965" g_stop="46608" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E214775" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46965" e_stop="46608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAAT</genome_strand>
        <mrna_strand>AAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTACGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGGTGTTCGTTGCTGCAGAAGGGATGTATACTGGGCCAGTTATTTACTGTGGGAAAAAAACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364202" ref_strand="+" ref_description="SGN-E364202 [cLPP-16-F8]">
      <seq>ttgaagtggcccttgaaatcgataatgtgttggccccaatagcatttgctgattggtattttgatcggaaatactattatttggtagatgaaaaacataccatgccaatcaaaaatacgatcaaaaacacaacttattatcatgactagactaatcttcatttattccaagaaaagtatttgattgttagacaatcaaattctctattgtatcatgtaaaagattttccctatgtatcaaatccggtgacaaagaggtccctttgacaaaattaataaaaatttctattgtgacgctgagcaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="49421" stop="48423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49121" g_stop="49093" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49092" i_stop="49006" i_length="87">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49005" g_stop="48715" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="307" r_length="278" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364202" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.042" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49121" e_stop="49093"/>
          <exon e_start="49005" e_stop="48715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTGGCCCTTGAAATCGATAATGTGGTAAGATATTATTTATTTTTGTTTTTATAACATATTTTTTTTAAAAAATGATGTTTGCTAACTATATATTGTTTTTGTTTTGTGCAGTTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAACTTATTATTATCATGAATAGACTAATCTTCATTTATTCCAAGAAAAGTTATCAAAAATATTTGATTGTTAGACAATCAAATTCTCTATTGTATCATGTAAAAGATTTTCCCTATGTATCCAATCCGGTGACAAAGAGGTCCCTTTGACAAAATTAATAAAAATTTCTATTGTGACACTGAATTATTAC</genome_strand>
        <mrna_strand>TTGAAGTGGCCCTTGAAATCGATAATGTG.......................................................................................TTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAAC---TTATTATCATGACTAGACTAATCTTCATTTATTCCAAGAAAAG----------TATTTGATTGTTAGACAATCAAATTCTCTATTGTATCATGTAAAAGATTTTCCCTATGTATCAAATCCGGTGACAAAGAGGTCCCTTTGACAAAATTAATAAAAATTTCTATTGTGACGCTGAGCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362155" ref_strand="+" ref_description="SGN-E362155 [cLPP-11-F5]">
      <seq>aacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaatacaaagccgttgatgaggggttaggcccagaaagtatgaatgcatccctacgagaaatgaggtctgttttcttaaacgcaatacccaaaagagataacccgaaacacagaggagcttttatagacgcagtgcatcatcatactagcctttttcgtaggtggtctcttgaagtggcccttgaaatcgataatgtgttggccccaatagcatttgctgattggtattttgatcggaaatactattatttggtagatgaaaaacataccatgccaatcaaaaatacgatcaaaaacacaacttattatcatgactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50096" stop="48586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49796" g_stop="49754" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49507" g_stop="49426" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="203" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49425" i_stop="49233" i_length="193">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49232" g_stop="49093" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="343" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49092" i_stop="49006" i_length="87">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49005" g_stop="48886" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="463" r_length="120" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362155" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49796" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49426"/>
          <exon e_start="49232" e_stop="49093"/>
          <exon e_start="49005" e_stop="48886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAGGTTAGTACAAATACTTGATTTAATGACAATTAACTAGTACTGATAAAAATTTTTATCAAAAAATATTTTTGTTATAGTGTATCATAATCAAATATAGATAAAATGATGAAAAAAAAGTGAATAATTTTTTTTGTTAGGTACATAACGTGAGTTATAATTCTAATGTTTTTGAATAATTTGTTGTAAAATTCAGAAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCCTTTTTCGCCGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTGGTAAGATATTATTTATTTTTGTTTTTATAACATATTTTTTTTAAAAAATGATGTTTGCTAACTATATATTGTTTTTGTTTTGTGCAGTTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAACTTATTATTATCATGAA</genome_strand>
        <mrna_strand>AACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATACAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG.................................................................................................................................................................................................AAATGAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGATAACCCGAAACACAGAGGAGCTTTTATAGACGCAGTGCATCATCATACTAGCCTTTTTCGTAGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTG.......................................................................................TTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAACTTATTATCATGACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546954" ref_strand="+" ref_description="SGN-E546954 [TUS-70-J9]">
      <seq>aagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaatacaaagccgttgatgaggggttaggcccagaaagtatgaatgcatccctacgagaaatgaggtctgttttcttaaacgcaatacccaaaagagataacccgaaacacagaggagcttttatagacgcagtgcatcatcatactagcctttttcgtaggtggtctcttgaagtggcccttgaaatcgataatgtgttggccccaataacatttgctgattggtattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50647" stop="48670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50347" g_stop="50288" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="185" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="246" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="300" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="378" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49507" g_stop="49426" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="460" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49425" i_stop="49233" i_length="193">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49232" g_stop="49093" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="600" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49092" i_stop="49006" i_length="87">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49005" g_stop="48970" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="636" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E546954" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50347" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49426"/>
          <exon e_start="49232" e_stop="49093"/>
          <exon e_start="49005" e_stop="48970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAGGTTAGTACAAATACTTGATTTAATGACAATTAACTAGTACTGATAAAAATTTTTATCAAAAAATATTTTTGTTATAGTGTATCATAATCAAATATAGATAAAATGATGAAAAAAAAGTGAATAATTTTTTTTGTTAGGTACATAACGTGAGTTATAATTCTAATGTTTTTGAATAATTTGTTGTAAAATTCAGAAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCCTTTTTCGCCGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTGGTAAGATATTATTTATTTTTGTTTTTATAACATATTTTTTTTAAAAAATGATGTTTGCTAACTATATATTGTTTTTGTTTTGTGCAGTTGGCCCCAATAGCATTTGCTGATTGGTATTTTGAT</genome_strand>
        <mrna_strand>AAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATACAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG.................................................................................................................................................................................................AAATGAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGATAACCCGAAACACAGAGGAGCTTTTATAGACGCAGTGCATCATCATACTAGCCTTTTTCGTAGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTG.......................................................................................TTGGCCCCAATAACATTTGCTGATTGGTATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333423" ref_strand="+" ref_description="SGN-E333423 [cTOD-20-H12]">
      <seq>tagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggaggtgctggaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattttggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctactcagaaaacatccaacaatatactaagacaccattttttcttcacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaatataaagccgttgatgaggggttaggcccagaaagtatgaatgcatccctacgagaaataaggtctgttttcttaaacgcaatacccaaaagagacaaccctaaacacagaggagcttttatagacgcaatgcatcatcatactagccttttttcgcgggtggtctcttgaagtggccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50677" stop="48809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="91" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="216" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="277" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="331" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="409" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49507" g_stop="49426" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="491" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49425" i_stop="49233" i_length="193">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49232" g_stop="49109" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="616" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E333423" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49426"/>
          <exon e_start="49232" e_stop="49109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAGGTTAGTACAAATACTTGATTTAATGACAATTAACTAGTACTGATAAAAATTTTTATCAAAAAATATTTTTGTTATAGTGTATCATAATCAAATATAGATAAAATGATGAAAAAAAAGTGAATAATTTTTTTTGTTAGGTACATAACGTGAGTTATAATTCTAATGTTTTTGAATAATTTGTTGTAAAATTCAGAAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCC-TTTTTCGCCGGTGGTCTCTTGAAGTGGCCCT</genome_strand>
        <mrna_strand>ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG.................................................................................................................................................................................................AAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCCTTTTTTCGCGGGTGGTCTCTTGAAGTGGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365056" ref_strand="+" ref_description="SGN-E365056 [cLPP-17-N8]">
      <seq>gcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttatgagacgagaaatacaaagccgttgatgaggggttaggcccagaaagtatgaatgcatccctacgagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50481" stop="49126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50181" g_stop="50070" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="173" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="227" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="305" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49507" g_stop="49426" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="387" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49425" i_stop="49233" i_length="193">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49232" g_stop="49228" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="392" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E365056" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50181" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49426"/>
          <exon e_start="49232" e_stop="49228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAGGTTAGTACAAATACTTGATTTAATGACAATTAACTAGTACTGATAAAAATTTTTATCAAAAAATATTTTTGTTATAGTGTATCATAATCAAATATAGATAAAATGATGAAAAAAAAGTGAATAATTTTTTTTGTTAGGTACATAACGTGAGTTATAATTCTAATGTTTTTGAATAATTTGTTGTAAAATTCAGAAATA</genome_strand>
        <mrna_strand>GCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTATGAGACGAGAAATACAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG.................................................................................................................................................................................................AAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363510" ref_strand="+" ref_description="SGN-E363510 [cLPP-4-P1]">
      <seq>agattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaatacaaagccgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50646" stop="49165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50346" g_stop="50288" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="184" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="245" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="299" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="377" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49507" g_stop="49465" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="420" r_length="43" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363510" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50346" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATG</genome_strand>
        <mrna_strand>AGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATACAAAGCCGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361034" ref_strand="+" ref_description="SGN-E361034 [cLPP-13-N20]">
      <seq>aatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcatggattagggattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaatacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51086" stop="49174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="108" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="0.90"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="195" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="320" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="381" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="435" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="513" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49507" g_stop="49474" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="547" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361034" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAAG</genome_strand>
        <mrna_strand>ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCATGGATTAGGGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363425" ref_strand="+" ref_description="SGN-E363425 [cLPP-4-C20]">
      <seq>taaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttatgagacgagaaatacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50672" stop="49175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50372" g_stop="50288" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="210" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="271" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="325" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="403" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49507" g_stop="49475" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="436" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363425" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50372" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATATAAA</genome_strand>
        <mrna_strand>TAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTATGAGACGAGAAATACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362723" ref_strand="+" ref_description="SGN-E362723 [cLPP-1-N21]">
      <seq>tcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51758" stop="49179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51458" g_stop="51395" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="156" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="243" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="368" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="429" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="483" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="561" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49507" g_stop="49478" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="591" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362723" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51458" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATAT</genome_strand>
        <mrna_strand>TCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364203" ref_strand="+" ref_description="SGN-E364203 [cLPP-16-F20]">
      <seq>ctggcagttctgcaggaggatatccagcactattatattgtgattatttccgcgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50484" stop="49179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50184" g_stop="50070" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="176" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="230" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="308" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49507" g_stop="49479" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="337" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364203" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50184" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAATA</genome_strand>
        <mrna_strand>CTGGCAGTTCTGCAGGAGGATATCCAGCACTATTATATTGTGATTATTTCCGCGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361548" ref_strand="+" ref_description="SGN-E361548 [cLPP-6-F1]">
      <seq>aagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatactttaggagacgagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50498" stop="49180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50302" g_stop="50288" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="140" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="201" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="255" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="333" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49507" g_stop="49480" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="361" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361548" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50302" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACTTTAGGAGACGAGAAAT</genome_strand>
        <mrna_strand>AAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACTTTAGGAGACGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362657" ref_strand="+" ref_description="SGN-E362657 [cLPP-1-N22]">
      <seq>tcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattttttctttacatgtcagcatttgataacatcgagacacaatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51758" stop="49297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51458" g_stop="51395" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="156" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="243" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="368" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="429" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="483" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49674" g_stop="49597" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="561" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49507" g_stop="49496" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="573" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362657" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51458" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49597"/>
          <exon e_start="49507" e_stop="49496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAGGTTGGTATAATATTAGTAACAAAAATTATTTAATTAAATTGATGTCTTCTCAATATTATTATTAATCAACATTTATAATACTTTTGCAGACACAATATACT</genome_strand>
        <mrna_strand>TCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTTACATGTCAGCATTTGATAACATCGAG.........................................................................................ACACAATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364050" ref_strand="+" ref_description="SGN-E364050 [cLPP-16-N23]">
      <seq>aacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcaatttagagggcgaaagatctcttacacagaacaagaggaactgtttgacaaaggataaaggaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctctacgcagaaaacatccaacaatatactaagacaccattgtttctttacatgtcagcatttgataacatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51062" stop="49298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50762" g_stop="50685" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="165" r_length="87" r_score="0.839"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="290" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="351" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="405" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49674" g_stop="49598" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="482" r_length="77" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364050" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50762" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGA</genome_strand>
        <mrna_strand>AACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAATTTAGAGGGCGAAAGATCTCTTACACAGAACAAGAGGAACTGTTTGACAAAGGATAAAGGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTACGCAGAAAACATCCAACAATATACTAAGACACCATTGTTTCTTTACATGTCAGCATTTGATAACATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546730" ref_strand="+" ref_description="SGN-E546730 [TUS-70-D23]">
      <seq>tttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttncaaaatgaaagcagaattgtgcctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52346" stop="49450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52152" g_stop="52142" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="163" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="246" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="373" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="465" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="552" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="677" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="738" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="792" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="49674" g_stop="49667" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="800" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E546730" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52152" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTA</genome_strand>
        <mrna_strand>TTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTNCAAAATGAAAGCAGAATTG...............................................................................TGCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547534" ref_strand="+" ref_description="SGN-E547534 [TUS-71-H11]">
      <seq>cttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcangagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatgaaagcagaattgtgcctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52292" stop="49450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51992" g_stop="51881" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="195" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="322" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="414" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="501" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="626" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="687" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49807" g_stop="49754" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="741" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="49674" g_stop="49667" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="749" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E547534" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51992" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49754"/>
          <exon e_start="49674" e_stop="49667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTGGTACAAATTATTCAATGATATGATTTTATCTAGTCATTTAAAATTAATATTATTACTAATTTTTCCAATTTTGGTGTAGTGCCTCTA</genome_strand>
        <mrna_strand>CTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCANGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG...............................................................................TGCCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363848" ref_strand="+" ref_description="SGN-E363848 [cLPP-3-P4]">
      <seq>agaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagattttcaggagttgccgctttacaaggagctgccaaaacgttaccaaaatcatgcacttcaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51787" stop="49466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51487" g_stop="51395" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="185" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="272" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="397" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49971" g_stop="49911" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="458" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49807" g_stop="49766" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="500" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363848" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51487" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49911"/>
          <exon e_start="49807" e_stop="49766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAAGTATGCATAGTTTATATGACTTTATTTTCTTTTTATATTCCTCGAAATTAAGGTAATTGTTTTCTAAAAATGAAAAAAAATAAAATCTTTATGTATGTTGTAGGGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATG</genome_strand>
        <mrna_strand>AGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA.......................................................................................................GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362349" ref_strand="+" ref_description="SGN-E362349 [cLPP-10-M10]">
      <seq>ccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacatggagatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51778" stop="49631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51478" g_stop="51395" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="176" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="263" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="388" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49971" g_stop="49931" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="429" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362349" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51478" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTT</genome_strand>
        <mrna_strand>CCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATGGAGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362589" ref_strand="+" ref_description="SGN-E362589 [cLPP-1-F15]">
      <seq>tcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacaacacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcatgaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactatgttcattccaagaatcctgtgctcgaaagattctggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51770" stop="49639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51470" g_stop="51395" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="162" r_length="86" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="249" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="374" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49971" g_stop="49939" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="407" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362589" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51470" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACATG</genome_strand>
        <mrna_strand>TCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTTT-T----GGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAACACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCATGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTATGTTCATTC..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362402" ref_strand="+" ref_description="SGN-E362402 [cLPP-10-H8]">
      <seq>tcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaaagattctggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52095" stop="49640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51893" g_stop="51881" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="96" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="223" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="315" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="527" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49971" g_stop="49940" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="559" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362402" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51893" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAAAGATTTTGGACAT</genome_strand>
        <mrna_strand>TCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAAAGATTCTGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359993" ref_strand="+" ref_description="SGN-E359993 [cLPP-9-M14]">
      <seq>ttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52345" stop="49758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="162" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="245" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="372" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="551" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="676" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49971" g_stop="49953" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="695" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E359993" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTCGAA</genome_strand>
        <mrna_strand>TTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329433" ref_strand="+" ref_description="SGN-E329433 [cTOD-11-K15]">
      <seq>acaattcaatgtgcaaatgcaacacaaaacccaaatttatttgatgtcgaaccaacaatagttcatagtgctgcgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggatttttcatctatccggaggagcatggtgtataaatgtcacagattgccaaaaacgtgccgaaggctcaaatggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtagttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggaggtgctggaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcatttcaagaatcctgtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52268" stop="49758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51968" g_stop="51881" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="171" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="298" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="390" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="477" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50194" g_stop="50070" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="602" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49971" g_stop="49956" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="618" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E329433" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51968" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50070"/>
          <exon e_start="49971" e_stop="49956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTTGTAAGGCTTCGTTTACGTTATTATTAAAAAAAAATATGAAATTAATTATTATTTATTTCAGACTTTAAATATCTCTACATATATTTTTCTCATAACAGCAAGAATCCTGTGCTC</genome_strand>
        <mrna_strand>ACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTGATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT..................................................................................................CAAGAATCCTGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363026" ref_strand="+" ref_description="SGN-E363026 [cLPP-2-J5]">
      <seq>ttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52345" stop="49772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="162" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="245" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="372" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="551" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50072" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="674" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363026" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCAT</genome_strand>
        <mrna_strand>TTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362048" ref_strand="+" ref_description="SGN-E362048 [cLPP-11-L24]">
      <seq>tgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattcattgccaattaattctagagtgaagtgtttagttgattctggctactttgttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51801" stop="49772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51501" g_stop="51395" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="199" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="286" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50194" g_stop="50072" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="409" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362048" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51501" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCAT</genome_strand>
        <mrna_strand>TGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363753" ref_strand="+" ref_description="SGN-E363753 [cLPP-3-E10]">
      <seq>tttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52342" stop="49826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52142" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="161" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="244" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="371" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="463" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="550" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50126" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="619" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363753" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</genome_strand>
        <mrna_strand>TTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362807" ref_strand="+" ref_description="SGN-E362807 [cLPP-2-G18]">
      <seq>ttaataaagatgatgatggttacaaaatctgttcaacttgttggtttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="49826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52142" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="160" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="370" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="462" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="549" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50126" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="618" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362807" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</genome_strand>
        <mrna_strand>TTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGGTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330291" ref_strand="+" ref_description="SGN-E330291 [cTOD-4-J21]">
      <seq>aaagatgatgatggttaccaaaatctgttcaacttgttgtcttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgcgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggatttttcatctatccggaggagcatggtgtataaatgtcacagattgccaaaaacgtgccgaaggctcaaatggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtagttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggaggtgctggaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52334" stop="49826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52142" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="156" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="239" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="366" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="458" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="545" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50126" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="614" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E330291" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTAC-AAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</genome_strand>
        <mrna_strand>AAA.............................................................................................................GATGATGATGGTTACCAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361073" ref_strand="+" ref_description="SGN-E361073 [cLPP-13-C8]">
      <seq>agcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgattatttccgtgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52069" stop="49826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51769" g_stop="51709" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="188" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="280" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="367" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50194" g_stop="50126" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="436" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361073" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51769" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</genome_strand>
        <mrna_strand>AGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361037" ref_strand="+" ref_description="SGN-E361037 [cLPP-13-P4]">
      <seq>taaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="49839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52145" g_stop="52142" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="156" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="239" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="366" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="458" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="545" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50139" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="601" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361037" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52145" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTA</genome_strand>
        <mrna_strand>TAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359921" ref_strand="+" ref_description="SGN-E359921 [cLPP-9-N18]">
      <seq>gtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattatattgtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52092" stop="49839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51792" g_stop="51709" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="211" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="303" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="390" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50194" g_stop="50139" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="446" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E359921" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51792" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTA</genome_strand>
        <mrna_strand>GTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359892" ref_strand="+" ref_description="SGN-E359892 [cLPP-9-B18]">
      <seq>agaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagattttaattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaagattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaagatatccagcaatattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51787" stop="49846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51487" g_stop="51395" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="182" r_length="89" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="269" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50194" g_stop="50146" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="318" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E359892" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51487" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATT</genome_strand>
        <mrna_strand>AGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TTT-TAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAAGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAAGATATCCAGCAATATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363723" ref_strand="+" ref_description="SGN-E363723 [cLPP-3-I5]">
      <seq>acatatatattttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52462" stop="49848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52162" g_stop="52142" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="173" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="256" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="383" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="475" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="562" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50148" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="609" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363723" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52162" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATATATTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATA</genome_strand>
        <mrna_strand>ACATATATATTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365085" ref_strand="+" ref_description="SGN-E365085 [cLPP-17-I15]">
      <seq>ttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgcaggaggatatccagcaatattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="49848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52142" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="160" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="370" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="462" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="549" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50148" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="596" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E365085" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATA</genome_strand>
        <mrna_strand>TTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361178" ref_strand="+" ref_description="SGN-E361178 [cLPP-13-H10]">
      <seq>gatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52332" stop="49872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="235" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="362" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="454" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="541" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50194" g_stop="50172" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="564" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361178" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTGC</genome_strand>
        <mrna_strand>GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361005" ref_strand="+" ref_description="SGN-E361005 [cLPP-13-F2]">
      <seq>aaagatgatgatggttacaagatctgttcaactcgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcctagctggcagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52334" stop="49873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52142" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="155" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="238" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="365" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="457" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="544" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50173" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="566" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361005" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCTAGCTGGCAGTTCTG</genome_strand>
        <mrna_strand>AAA.............................................................................................................GATGATGATGGTTACAAGATCTGTTCAACTCGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCTAGCTGGCAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364029" ref_strand="+" ref_description="SGN-E364029 [cLPP-16-H21]">
      <seq>ttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="49984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52142" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="160" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="370" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="462" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="549" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50194" g_stop="50187" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="557" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364029" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCT</genome_strand>
        <mrna_strand>TTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364665" ref_strand="+" ref_description="SGN-E364665 [cLPP-18-H15]">
      <seq>atcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaatgccaaaaatgcaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52271" stop="49984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51971" g_stop="51881" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="174" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="301" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="393" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50288" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="480" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50194" g_stop="50187" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="488" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364665" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51971" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50288"/>
          <exon e_start="50194" e_stop="50187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAATGTAAGTAAATTATAAATTTTTTTTCAGCACTTGTTCTATACAAATAAATAAATATTTATTTATAAAATTAATTTTAATATTTTATTTTTATAGGCAATCCT</genome_strand>
        <mrna_strand>ATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAATGCCAAAAAT.............................................................................................GCAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365165" ref_strand="+" ref_description="SGN-E365165 [cLPP-17-H5]">
      <seq>ttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgctagaaaaaggattaaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52345" stop="49997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52151" g_stop="52142" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="162" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="245" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="372" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50297" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="542" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E365165" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52151" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAAT</genome_strand>
        <mrna_strand>TTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTAGAAAAAGGATTAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363088" ref_strand="+" ref_description="SGN-E363088 [cLPP-19-A5]">
      <seq>atttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaggagctgcttgaaaaaggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52234" stop="50004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51934" g_stop="51881" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="264" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="356" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50304" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="427" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363088" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51934" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATT</genome_strand>
        <mrna_strand>ATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGCTGCTTGAAAAAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326022" ref_strand="+" ref_description="SGN-E326022 [cTOD-1-I23]">
      <seq>ttttttaataaagatgatgatggttacaaaatctgttcaacttgttgtcttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgcgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggatttttcatctatccggaggagcatggtgtataaatgtcacagattgccaaaaacgtgccgaaggctcaaatggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtagttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgaagaggtgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52347" stop="50012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52142" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="164" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="247" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="374" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="466" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50312" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="529" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E326022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAA</genome_strand>
        <mrna_strand>TTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAAGAGGTGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360384" ref_strand="+" ref_description="SGN-E360384 [cLPP-8-D4]">
      <seq>ataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccagtatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtacttgatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="50019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52146" g_stop="52142" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="157" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="240" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="367" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="459" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50319" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="515" r_length="56" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E360384" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52146" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGT</genome_strand>
        <mrna_strand>ATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGTATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364327" ref_strand="+" ref_description="SGN-E364327 [cLPP-20-H6]">
      <seq>ttttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52347" stop="50028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52153" g_stop="52142" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="164" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="247" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="374" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="466" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50328" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="513" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364327" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52153" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</genome_strand>
        <mrna_strand>TTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363191" ref_strand="+" ref_description="SGN-E363191 [cLPP-19-G2]">
      <seq>ttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="50028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52142" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="160" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="370" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="462" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50328" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="509" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363191" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</genome_strand>
        <mrna_strand>TTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330332" ref_strand="+" ref_description="SGN-E330332 [cTOD-4-J10]">
      <seq>aaagatgatgatggttacaaaatctgttcaacttgttgtcttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgcgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggatttttcatctatccggaggagcatggtgtataaatgtcacagattgccaaaaacgtgccgaaggctcaaatggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtagttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtnataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52334" stop="50028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52144" g_stop="52142" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="155" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="238" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="365" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="457" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50328" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="504" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E330332" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52144" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</genome_strand>
        <mrna_strand>AAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTNATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363742" ref_strand="+" ref_description="SGN-E363742 [cLPP-3-O9]">
      <seq>tggttacaaaatctgttcaacttgttgttttacttgtttgctggttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52324" stop="50028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52024" g_stop="51881" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="227" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="354" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="446" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50328" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="493" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363742" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52024" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</genome_strand>
        <mrna_strand>TGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGGTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363826" ref_strand="+" ref_description="SGN-E363826 [cLPP-3-H20]">
      <seq>atctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaactaaagatcttcagtttagagggcaaaagattttttacacagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52314" stop="50028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52014" g_stop="51881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="217" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="344" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="436" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50374" g_stop="50328" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="483" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363826" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52014" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</genome_strand>
        <mrna_strand>ATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364293" ref_strand="+" ref_description="SGN-E364293 [cLPP-20-I14]">
      <seq>tttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattaacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataataaaactaaagatcttcagtttagagggcaaaagattttttacacagtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52342" stop="50029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52142" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="161" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="244" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="371" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="463" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50374" g_stop="50329" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="509" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364293" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
          <exon e_start="50374" e_stop="50329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGAGTATGTTCTAATTCTAAATTTCAAAGTTAAAATATGTTTTTTGATTTGATTTGAGTTTGTATCTATATCCTGTAAATTTAACTATGCACCAGTGAACATTTAAATGTATGAAAATTTAAATAAGTAAGCACACATATCTTACTTGAATTTGACATTCTACACGTATTATGTCATATAAAACTTGTGTGTCTTTTTTTCTGAGCTGAAATCAAATTCAAATGACATATTTATGTATTATATACCCCAAAAATAATTATATTTGTTGAAAATGGATTATCATTCCCTACATGTTTTTTTCTTTTTTGTTTAGACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTAC</genome_strand>
        <mrna_strand>TTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTAACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAAA......................................................................................................................................................................................................................................................................................................................ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365021" ref_strand="+" ref_description="SGN-E365021 [cLPP-17-B22]">
      <seq>aaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaagctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatccaagtaataatagaaactaagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52317" stop="50385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52017" g_stop="51881" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="220" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="347" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="439" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E365021" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52017" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA</genome_strand>
        <mrna_strand>AAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAAGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359715" ref_strand="+" ref_description="SGN-E359715 [cLPP-5-E18]">
      <seq>atttatttgatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcaccttcatcatactatttcgaaccaggattttgagatggagctgaaaattggattgctcatctatccggaggagcatggtgtataaatgtcacaaattgccacaaacgtgccgcaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccaaatttttataattggaacaaagtacttgttgcatactgcgatggtggatcggtcattggagattctgaatacattgatccaagttattatagaactaaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52234" stop="50385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51934" g_stop="51881" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="264" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50685" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="356" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E359715" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51934" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA</genome_strand>
        <mrna_strand>ATTTATTTGATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTTCATCATACTATTTCGAACCAGGATTTTGAGATGGAGCTGAAAATTGGATTGCTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAAATTGCCACAAACGTGCCGCAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGGTCATTGGAGATTCTGAATACATTGATCCAAGTTATTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360679" ref_strand="+" ref_description="SGN-E360679 [cLPP-7-P5]">
      <seq>ttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52142" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="160" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="370" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50699" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="448" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E360679" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATC</genome_strand>
        <mrna_strand>TTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361482" ref_strand="+" ref_description="SGN-E361482 [cLPP-6-G11]">
      <seq>ttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52309" stop="50399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52009" g_stop="51881" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="212" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="339" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50699" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="417" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361482" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52009" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATC</genome_strand>
        <mrna_strand>TTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361832" ref_strand="+" ref_description="SGN-E361832 [cLPP-12-D17]">
      <seq>tttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52342" stop="50400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52142" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="161" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="244" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="371" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50700" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="448" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361832" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</genome_strand>
        <mrna_strand>TTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362247" ref_strand="+" ref_description="SGN-E362247 [cLPP-10-G8]">
      <seq>taaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaagctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="50400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52145" g_stop="52142" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="156" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="239" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="366" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50700" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="443" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362247" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52145" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</genome_strand>
        <mrna_strand>TAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAAGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359647" ref_strand="+" ref_description="SGN-E359647 [cLPP-5-J18]">
      <seq>tgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52330" stop="50400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52030" g_stop="51881" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="233" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="360" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50700" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="437" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E359647" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52030" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</genome_strand>
        <mrna_strand>TGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361901" ref_strand="+" ref_description="SGN-E361901 [cLPP-12-P8]">
      <seq>atctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaagctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52314" stop="50400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52014" g_stop="51881" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="217" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="344" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50700" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="421" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361901" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52014" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</genome_strand>
        <mrna_strand>ATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAAGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361553" ref_strand="+" ref_description="SGN-E361553 [cLPP-6-F21]">
      <seq>tctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccataaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52313" stop="50400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52013" g_stop="51881" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="216" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="343" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50700" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="420" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361553" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52013" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</genome_strand>
        <mrna_strand>TCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCATAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360992" ref_strand="+" ref_description="SGN-E360992 [cLPP-13-B2]">
      <seq>tttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgccaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52295" stop="50401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51996" g_stop="51881" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="200" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="327" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50701" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="403" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E360992" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51996" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATG-CAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGA</genome_strand>
        <mrna_strand>TTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361420" ref_strand="+" ref_description="SGN-E361420 [cLPP-6-L15]">
      <seq>gatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52332" stop="50403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="235" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="362" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50703" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="436" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361420" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATT</genome_strand>
        <mrna_strand>GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363787" ref_strand="+" ref_description="SGN-E363787 [cLPP-3-F11]">
      <seq>tttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52342" stop="50407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52142" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="161" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="244" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="371" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50707" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="441" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363787" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATA</genome_strand>
        <mrna_strand>TTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364982" ref_strand="+" ref_description="SGN-E364982 [cLPP-17-O18]">
      <seq>aataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattggagattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="50410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52147" g_stop="52142" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="158" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="241" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="368" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50710" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="435" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364982" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52147" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGA</genome_strand>
        <mrna_strand>AATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360006" ref_strand="+" ref_description="SGN-E360006 [cLPP-9-H11]">
      <seq>aacatatatattttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaagctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52463" stop="50420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52163" g_stop="52142" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="174" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="257" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="384" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50720" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="441" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E360006" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52163" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATATATATTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTG</genome_strand>
        <mrna_strand>AACATATATATTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAAGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362919" ref_strand="+" ref_description="SGN-E362919 [cLPP-2-C17]">
      <seq>caaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggatcgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52318" stop="50421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52018" g_stop="51881" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="221" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="348" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50721" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="404" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362919" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52018" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATT</genome_strand>
        <mrna_strand>CAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGATCGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361898" ref_strand="+" ref_description="SGN-E361898 [cLPP-12-P2]">
      <seq>ttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcgatggtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="50429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52142" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="160" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="370" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50729" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="418" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361898" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGAT</genome_strand>
        <mrna_strand>TTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGATGGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361899" ref_strand="+" ref_description="SGN-E361899 [cLPP-12-P4]">
      <seq>taaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaaaggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatactgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52337" stop="50437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52145" g_stop="52142" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="156" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="239" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="366" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50737" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="406" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361899" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52145" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGA</genome_strand>
        <mrna_strand>TAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAAGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACTGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361753" ref_strand="+" ref_description="SGN-E361753 [cLPP-12-A5]">
      <seq>atgatgatggttccaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52331" stop="50441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52031" g_stop="51881" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="234" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="361" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50741" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="397" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361753" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52031" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATACT</genome_strand>
        <mrna_strand>ATGATGATGGTTCCAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359902" ref_strand="+" ref_description="SGN-E359902 [cLPP-9-F18]">
      <seq>caacatatatattttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatccagatttttataattggaacaaagtacttgttgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52464" stop="50442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52164" g_stop="52142" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="175" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="258" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="385" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50776" g_stop="50742" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="420" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E359902" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52164" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATATATATTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAACAAAGTAGTTGTTGCATAC</genome_strand>
        <mrna_strand>CAACATATATATTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAACAAAGTACTTGTTGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364249" ref_strand="+" ref_description="SGN-E364249 [cLPP-20-G5]">
      <seq>aaaatctgttcaacttgttgttttacttgtttgctgtgtgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccaaaggctcaagtggttcatcaaaactaatgggtccactacaattttcaaggaattcacagtaagaataatacccaaaatgcagatttttataattggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52317" stop="50460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52017" g_stop="51881" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="220" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="348" r_length="128" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50776" g_stop="50760" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="365" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364249" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52017" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
          <exon e_start="50776" e_stop="50760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAA-TTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAGGTACGATTTCATTTTATGATATGAAATACGAGATGAAAATCAATATTTGAATAGTTTCATTTTCAAATCACATAATAAAATTTTTAAATTCTCTAAAAAAAAATTTTAAATACAAAAATTATCTCGCTTATTTATATTTCGTAAAAAACAAAATACTATCATTTTTACCTATCAACTATTTATTTGAACAAAATTTATTTACTTCATATGACTACTCTTATATATCAACCTTTAAACCATATCTCATATACCATTACTATTTCCAATCAAAATTACAATTAATTCAAATTAAAGCCTACATTATTTATTATAACCAACCAGAAAATAATATACTACAACTCATGCTCAATTATGTTTTTATTAAATTAAAATTTGACTTTAAAATGTTGAACTTTTTTGAAGAATAATTTTTGTGATACTATATTTTTGTTACGAATTTTTGCTTATGAAGTTTTATGTTTATTAAGCAGAAATACAATTTGAAAATATAAATTTCATGTCCAAATAAAATTTTAATTTTATTTTATATGATTTTATCTCACATAATCAAATTATGGTTGTTGAATTATCATCTGTCCTATATATACATATGATTATAATCTTATGTAAAATATGCAGATTTTTATAATTGGAAC</genome_strand>
        <mrna_strand>AAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTGTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCAAAGGCTCAAGTGGTTCATCAAAACTAATGGGTCCACTACAATTTTCAAGGAATTCACAGTAAGAATAATACCCAAAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTATAATTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363262" ref_strand="+" ref_description="SGN-E363262 [cLPP-4-G23]">
      <seq>caacatatatattttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaagagctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtgtgaataataccctaaatccagattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52464" stop="51093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52164" g_stop="52142" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="175" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="258" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51395" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="386" r_length="128" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E363262" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52164" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATATATATTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAG-GCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG</genome_strand>
        <mrna_strand>CAACATATATATTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGAGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTGTGAATAATACCCTAAATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361471" ref_strand="+" ref_description="SGN-E361471 [cLPP-6-P22]">
      <seq>gctgcaggattttttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52348" stop="51098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="173" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="256" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51398" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="380" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361471" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATC</genome_strand>
        <mrna_strand>GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360840" ref_strand="+" ref_description="SGN-E360840 [cLPP-7-F2]">
      <seq>caaaatctgttcaacttgttgatttacttgtttgctgtctgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52318" stop="51098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52018" g_stop="51881" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="221" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51398" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="345" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E360840" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52018" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATC</genome_strand>
        <mrna_strand>CAAAATCTGTTCAACTTGTTGATTTACTTGTTTGCTGTCTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361800" ref_strand="+" ref_description="SGN-E361800 [cLPP-12-A12]">
      <seq>acatatatattttttaataaagatgatgatggttacaaaatctgttcaacttgttgttgtacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtctaaccaacaatagttcatattgctgtgtcaaagggagcagtgtgcttggatggatcacctccatcatactattttgaaccatgatttggagatggagctgaaaattggattgttcatctatccagaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaatgctcaagtggttcatcaaaacgaatgggtccactacaatttcaaggaattcacagtaagaataatacccaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52462" stop="51099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52162" g_stop="52142" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="173" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="256" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51399" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="379" r_length="123" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E361800" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52162" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATATATTTTTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAAT</genome_strand>
        <mrna_strand>ACATATATATTTTTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTGTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCTAACCAACAATAGTTCATATTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCATCATACTATTTTGAACCATGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................AGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAATGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364250" ref_strand="+" ref_description="SGN-E364250 [cLPP-20-G7]">
      <seq>atttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagattgccagaaacgtgccgaaggctcaagtggttcatcaaaacgaatgggtccactacaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52234" stop="51131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51934" g_stop="51881" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="137" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51521" g_stop="51431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="228" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364250" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51934" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTC</genome_strand>
        <mrna_strand>ATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAGAAACGTGCCGAAGGCTCAAGTGGTTCATCAAAACGAATGGGTCCACTACAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365207" ref_strand="+" ref_description="SGN-E365207 [cLPP-17-H16]">
      <seq>tttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgtttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatattgctgtgtcaaaaggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcacagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52342" stop="51191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52142" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="161" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="244" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51491" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="275" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E365207" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCACAGATT</genome_strand>
        <mrna_strand>TTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATATTGCTGTGTCAAAAGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCACAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364614" ref_strand="+" ref_description="SGN-E364614 [cLPP-18-K23]">
      <seq>tttaataaagatgatgatggttacaaaatctgttcaacttgttgttttacttgcttgctgtttgaccatcatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatctatccggaggagcatggtgtataaatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52342" stop="51196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52142" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52141" i_stop="52033" i_length="109">
            <donor d_prob="0.397" d_score="0.00"/>
            <acceptor a_prob="0.942" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52032" g_stop="51881" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="161" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51791" g_stop="51709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="244" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51521" g_stop="51496" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="270" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E364614" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52142"/>
          <exon e_start="52032" e_stop="51881"/>
          <exon e_start="51791" e_stop="51709"/>
          <exon e_start="51521" e_stop="51496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAAGTATGTACATCTTTATAATCTTATTTTTTTTCTATCTATCCATTTGCTTTCTTTGTATGTTCTTATTCAAAATTTCATCCATTTTTTTTTTAAATTTTATGTTTTACAGGATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCCGTAAGTCGTTGTGAAAGTTTATTTGAATGACTTTTGTTTGACCATTAATTAATATATAGTATATTTAAGTTATTATTTTAAGATTTAAGATTTTTATTATTTTTTTGATTCTAAAGAATGAAAAAATTTCATGAATAAACGCATACTAATATTATTTCAAAAATTTATTAAATAACTTTGTTCATAGGGAGGAGCATGGTGTATAAATGTCAC</genome_strand>
        <mrna_strand>TTTAATAAA.............................................................................................................GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTTTTACTTGCTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTATCC...........................................................................................................................................................................................GGAGGAGCATGGTGTATAAATGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362757" ref_strand="+" ref_description="SGN-E362757 [cLPP-2-E1]">
      <seq>caaaatctgttcaacttgttgttttacttgtttgctgtttgaccaggatcacaattcaatgtgcaaatgcaacacaaaacccaaatttatttaatgtcgaaccaacaatagttcatagtgctgtgtcaaagggagcagtgtgcttggatggatcacctccagcatactattttgaaccaggatttggagatggagctgaaaattggattgttcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52318" stop="51412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52018" g_stop="51881" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51880" i_stop="51792" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51791" g_stop="51712" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="218" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E362757" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52018" e_stop="51881"/>
          <exon e_start="51791" e_stop="51712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAGGTTAATTAATATTTTCACTAAATATGTAAAATTATATTTTAAATTTAAAAAAATTAACAAATCTAAAATTAACACTATTTATTTGGCAGTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTA</genome_strand>
        <mrna_strand>CAAAATCTGTTCAACTTGTTGTTTTACTTGTTTGCTGTTTGACCAGGATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGTGTCAAAGGGAGCAG.........................................................................................TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTGTTCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331495" ref_strand="+" ref_description="SGN-E331495 [cTOD-9-A6]">
      <seq>tccctctgataacaactcttggctaaagccatcctatactctttttctctttagtcattacattattaacaatgcctgaggcaccaaagaattcccctattgttgctgaagaaaacaagaaaactcttcatttcattgaagatgttaccaccaaagctgatgagatccaaaagagagtccttgctgaaatactttgtcgaaatgccaacgttgagtacttgaagcgctatgctgatcttaatggcaatactgatagagagactttcaaaaaagttatgcctgttatcagttatgaagatattcagcatgatatcaaccgcattgcgagtggtgatacatctcctatcttgtgctcccaacctgtctctgaattcttgacaagttctggtacgtcaggaggggagaggaaattgatgccaacaacagaggaagagcttggaagacgatcgttgctttatagtcttctgatgcctgtgatgagtcattttgtcccagatttggagacgggcaaaggaatgtactttctgtttgtaaaatctgaatctaagaccccgggaggcctattagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="64225" stop="65488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64525" g_stop="64906" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64907" i_stop="64999" i_length="93">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65000" g_stop="65188" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="571" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E331495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64525" e_stop="64906"/>
          <exon e_start="65000" e_stop="65188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTGATAACAACTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAGGTTGGAATGTTGTTAATTTTTACATACTTTTTGTTTTTACGATATTTTCCATTACGGTAAATGTAAATGAGATTTTTTTTTTGTAATACGCAGTTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCG</genome_strand>
        <mrna_strand>TCCCTCTGATAACAACTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAG.............................................................................................TTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689337" ref_strand="+" ref_description="SGN-E689337 [t3_tus_84_D16]">
      <seq>cattctcttggctaaagccatcctatactctttttctcttccttcattacattattaacaatgcctgaggcaccaaagaattcccctattgttgctgaagaaaacaagaaaactcctcatttcattgaagatgttaccaccaaagctgatgagatccaaaagagagtccttgctgaaatactttgtcgaaatgccaacgttgagtacttgaagcgctatgctgatcttaatggcaatactgatagagagactttcaaaaaagttatgcctgttatcagttatgaagatattcagcatgatatcaaccgcattgcgagtggtgatacatctcctatcttgtgctcccaacctgtctctgaattcttgacaagttctggtacgtcaggaggggagaggaaattgatgccaacaacagaggaagagcttggaagacgatcgttgctttatagtcttctgatgcctgtgatgagtcattttgtcccagatttggagacgggcaaaggaatgtactttctgtttgtaaaatctgaatctaagaccccgggaggcctattagctcgtcctgttttaacaagttattacaatagccctcattttaaaaacagacgtcctgacccttacacaaactacactagcccaaatgaaactattctctgccctgattcataacaaagcatgtattcccaaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="64240" stop="65622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64537" g_stop="64906" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64907" i_stop="64999" i_length="93">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65000" g_stop="65322" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="694" r_length="323" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E689337" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64537" e_stop="64906"/>
          <exon e_start="65000" e_stop="65322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-ACTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAGGTTGGAATGTTGTTAATTTTTACATACTTTTTGTTTTTACGATATTTTCCATTACGGTAAATGTAAATGAGATTTTTTTTTTGTAATACGCAGTTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCT</genome_strand>
        <mrna_strand>CATTCTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTCCTTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCCTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAG.............................................................................................TTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATAACAAAGCATGTATTCCCAAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332554" ref_strand="+" ref_description="SGN-E332554 [cTOD-18-M1]">
      <seq>tcttggctaaagccatcctatactctttttctctttagtcattacattattaacaatgcctgaggcaccaaagaattcccctattgttgctgaagaaaacaagaaaactcttcatttcattgaagatgttaccaccaaagctgatgagatccaaaagagagtccttgctgaaatactttgtcgaaatgccaacgttgagtacttgaagcgctatgctgatcttaatggcaatactgatagagagactttcaaaaaagttatgcctgttatcagttatgaagatattcagcatgatatcaaccgcattgcgagtggtgatacatctcctatcttgtgctcccaacctgtctctgaattcttgacaagttctggtacgtcaggaggggagaggaaattgatgccaacaacagaggaagagcttggaagacgatcgttgctttatagtcttctgatgcctgtgatgagtcattttgtcccagatttggagacgggcaaaggaatgtactttctgtttgtaaaatctgaatctaagaccccgggaggcctattagctcgtcctgttttaacaagttattacaatagccctcattttaaaaacagacgtcctgacccttacacaaactacactagcccaaatgaaactattctctgccctgattcataccagagcatgtattcccaaatgctctgtggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="64241" stop="65629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64541" g_stop="64906" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64907" i_stop="64999" i_length="93">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65000" g_stop="65329" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="696" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E332554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64541" e_stop="64906"/>
          <exon e_start="65000" e_stop="65329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAGGTTGGAATGTTGTTAATTTTTACATACTTTTTGTTTTTACGATATTTTCCATTACGGTAAATGTAAATGAGATTTTTTTTTTGTAATACGCAGTTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACT</genome_strand>
        <mrna_strand>TCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAG.............................................................................................TTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332803" ref_strand="+" ref_description="SGN-E332803 [cTOD-18-N1]">
      <seq>tcttggctaaagccatcctatactctttttctctttagtcattacattattaacaatgcctgaggcaccaaagaattcccctattgttgctgaagaaaacaagaaaactcttcatttcattgaagatgctaccaccaaagctgatgagatccaaaagagagtcctcgctgaaatactttgtccaaatgccaacgctgagtacttgaagcgctacgctgatcttaatggcaatactgatagacacactctcaaaaaagttatgcctgctatcagttatgaacatattcaccatcatatcaaccgcattgcgagcggtgatacatctcctatcttctgctcccaacctgtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="64241" stop="65193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64541" g_stop="64893" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E332803" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64541" e_stop="64893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTG</genome_strand>
        <mrna_strand>TCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGCTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTCGCTGAAATACTTTGTCCAAATGCCAACGCTGAGTACTTGAAGCGCTACGCTGATCTTAATGGCAATACTGATAGACACACTCTCAAAAAAGTTATGCCTGCTATCAGTTATGAACATATTCACCATCATATCAACCGCATTGCGAGCGGTGATACATCTCCTATCTTCTGCTCCCAACCTGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333391" ref_strand="+" ref_description="SGN-E333391 [cTOD-20-B3]">
      <seq>gagagtccttgctgaaatactttgtcgaaatgccaacgttgagtacttgaagcgctatgctgatcttaatggcaatactgatagagagactttcaaaaaagttatgcctgttatcagttatgaagatattcagcatgatatcaaccgcattgcgagtggtgatacatctcctatcttgtgctcccaacctgtctctgaattcttgacaagttctggtacgtcaggaggggagaggaaattgatgccaacaacagaggaagagcttggaagacgatcgttgctttatagtcttctgatgcctgtgatgagtcattttgtcccagatttggagacgggcaaaggaatgtactttctgtttgtaaaatctgaatctaagaccccgggaggcctattagctcgtcctgttttaacaagttattacaatagccctcattttaaaaacagacgtcctgacccttacacaaactacactagcccaaatgaaactattctctgccctgattcataccagagcatgtattcccaaatgctctgtggactcagccaaaatgcacaagtccttcgtggtgggcgcggttttttgcctctggcttcatccgcgccatccgcttcttagagaagcactgggtcccttcttgtactgatattcgatccggtatcatgaatactgaattgattactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="64397" stop="65771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64697" g_stop="64906" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64907" i_stop="64999" i_length="93">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65000" g_stop="65471" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="684" r_length="474" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E333391" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64697" e_stop="64906"/>
          <exon e_start="65000" e_stop="65471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAGGTTGGAATGTTGTTAATTTTTACATACTTTTTGTTTTTACGATATTTTCCATTACGGTAAATGTAAATGAGATTTTTTTTTTGTAATACGCAGTTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTCCTTCGT-GTTGGCGCGG-TTTTTGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAGCACT-GGTCCCTTCTTTGTACTGATATTCGATCCGGTATCATGAATACTGAATTGATTACTGAT</genome_strand>
        <mrna_strand>GAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAG.............................................................................................TTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTCCTTCGTGGTGGGCGCGGTTTTTTGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAGCACTGGGTCCCTTC-TTGTACTGATATTCGATCCGGTATCATGAATACTGAATTGATTACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392798" ref_strand="+" ref_description="SGN-E392798 [TUS-36-P8]">
      <seq>agaaggtaagggatgatggtatagccttagatttcgaagtaggagatgaagttgttaagatcatcaacgttaagagctcttccttgccatgtccattattagtattttcacctactactgaaggttcctatcccattctactatttttccatggattccgcctccaacccgactcttacaagtccctcctcctacatatttcttcccatcaatatatcgccgttgctcctaagttctctctaatgacatctcgatgcgaagtaaaaacagcaaaaaaagtagcagagtggttatcagctaagaagctcaactctgtgctgccagagaaagtttttccagacatccagaaagtcgcggtgtcaggccacagcagaggaggtaaaacagcattcgccttagctttagcctatggatcaggagatagcaagggcgaatccatcgtcacttcaggtaataacaataacaatgatgataatagcaataatggcgatggtgataagtgagtatcgtcaatcccgagactctgatttctcaagacgattctgttactagtgctgcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71781" stop="68555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71481" g_stop="71249" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71169" g_stop="70953" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="450" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70952" i_stop="68968" i_length="1985">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68967" g_stop="68855" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="563" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E392798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71481" e_stop="71249"/>
          <exon e_start="71169" e_stop="70953"/>
          <exon e_start="68967" e_stop="68855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAGGTATACATACGGCAACAAACTCACTCACTCTGTATTTCATTCATCAATCAAAATTCATTTTTAAAAAATATGTTTGCAGTTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAGGTACCTGAACCTTTTTATCTTACATATATATATGTGCGCAATTTGAATTTCATATTACATCTTAGGAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATCAAATAAATAACACATCATTTTATTACTACCTCCTAATAATTGATGATGTTTGCATTAATTCTATATTTGTATTGAGTGAAGTATATCTATTGAATAAAAATGTTTGTTTGTTATCCTTTTCATTCATTTCTATATTTTCACTTGGAATACATAAATGCTCGTGTGAAACCAACATGTTGAGCAAATATATATATATTCACCCCTTCAAGTTCAATGATCGAATGTCTCTGATACATATTTGTAAAACAATGATCGATCGAGTACCTCATACTATATATCTTACTAAGAAATAAACGTCTCAAATCTCCGATCCATATATATATATATGTCGTGATCAATCATGTTCTCCACAATTGGTGTAATGCACCAAGAATTCGATTTTTTTGTAACTGATATTTTTGAAGTTGTCAAAAATAATATTTGTTATGTATATTAAATAAGTTTTGTATTAAAGAAGTATGCTTAATAAGATAATAGGATAAGAGCTTATTAAGGGTATAAAAGACATTCAATATTTAAAGAATATTTTAGTATGTTTAATTAGAAATATGTTTAGAGCACGTAGATATAAAAGTTATTCAATATAAATATTCATTCTTTTATAATTATATAAATAGGCAAATAGATAGTTAAATAGTAATTCTATCTAGAATCAAATCTGTTTTTCGAATTATAATTTCAAAAATCATAATTAGACTTTAAGCATTTTAGGAAAATACATAAATAATTCAATTAGAAACAAATCTGGTCAATAAATCACCTAGAACCAAAAAAGAATTCGAATTATAATTTTAAATATCATAATTAGACTTAAGCATTTTAGGAAAATACATAAATAATTCATTTAAAACCAAATCTAGTCCTTAGACTTGTGATTTCAAAAATCACATGAATAAATAATTCACTTAATTATATGGTATTTACACTTCCTTGTTGTGAATAAAATTATGGTATTAACATTAATATTAGGCATCTATAAATAAACCAATAGTCCTTATGTAACTTGCTCAATCATAATTTCTTCTCCCACAAAAAGAAATGTTCTCTATTTTTTTTTCTTGAGTGTATGAAAAATATGGCTCACATTGTTGTGGACACGTTGTTTTAATAAGGTGCTTTAACCGTTTTTGTTCTGAAGCTGAATATCCAACCCCCTTTGAAAGAAAATGAATTTAGTGATACAAATATTAACAGGTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTATGGGGTAACAGATGGATCACATTTTTACCTGTTTTTTCAACTTCCAGGTAATAACAATAACAATGATGATAATAGCAATAATGGCGATGGTGATAAGTGAGTATCGTCAATCCCGAGACTCTGATTTCTCAAGACGATTCTGTTACTAGTGCTGCAAAAT</genome_strand>
        <mrna_strand>AGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG...............................................................................TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAACAATAACAATGATGATAATAGCAATAATGGCGATGGTGATAAGTGAGTATCGTCAATCCCGAGACTCTGATTTCTCAAGACGATTCTGTTACTAGTGCTGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241509" ref_strand="+" ref_description="SGN-E241509 [cLED-28-N13]">
      <seq>gaaggtaagggatgatggtatagccttacatttcgaagtaggagatgaagttgttaagatcatcaacgttaagagctcttccttgccatgtccattattagtattttcacctactactgaaggttcctatcccattctactatttttccatggattccgcctccaacccgactcttacaagtccctcctcctacatatttcttcccatcaatatatcgccgttgctcctaagttctctctaatgacatctcgatgcgaagtaaaaacagcaaaaaaagtagcagagtggttatcagctaagaagctcaactctgtgctgccagagaaagtttttccagacatccagaaagtcgcggtgtcaggccacagcagaggaggtaaaacagcattcgccttagctttagcctatggatcaggagatagcaagggcgaatccatcgtcacttcaggtaataacaataacaatgatgataatagcaataatggcgatggtgataagtgagtatcgtcaatcccgagactctgatttctcaagacgattctgttactagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71780" stop="68561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71480" g_stop="71249" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71169" g_stop="70953" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="449" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70952" i_stop="68968" i_length="1985">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68967" g_stop="68861" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="556" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E241509" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71480" e_stop="71249"/>
          <exon e_start="71169" e_stop="70953"/>
          <exon e_start="68967" e_stop="68861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAGGTATACATACGGCAACAAACTCACTCACTCTGTATTTCATTCATCAATCAAAATTCATTTTTAAAAAATATGTTTGCAGTTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAGGTACCTGAACCTTTTTATCTTACATATATATATGTGCGCAATTTGAATTTCATATTACATCTTAGGAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATCAAATAAATAACACATCATTTTATTACTACCTCCTAATAATTGATGATGTTTGCATTAATTCTATATTTGTATTGAGTGAAGTATATCTATTGAATAAAAATGTTTGTTTGTTATCCTTTTCATTCATTTCTATATTTTCACTTGGAATACATAAATGCTCGTGTGAAACCAACATGTTGAGCAAATATATATATATTCACCCCTTCAAGTTCAATGATCGAATGTCTCTGATACATATTTGTAAAACAATGATCGATCGAGTACCTCATACTATATATCTTACTAAGAAATAAACGTCTCAAATCTCCGATCCATATATATATATATGTCGTGATCAATCATGTTCTCCACAATTGGTGTAATGCACCAAGAATTCGATTTTTTTGTAACTGATATTTTTGAAGTTGTCAAAAATAATATTTGTTATGTATATTAAATAAGTTTTGTATTAAAGAAGTATGCTTAATAAGATAATAGGATAAGAGCTTATTAAGGGTATAAAAGACATTCAATATTTAAAGAATATTTTAGTATGTTTAATTAGAAATATGTTTAGAGCACGTAGATATAAAAGTTATTCAATATAAATATTCATTCTTTTATAATTATATAAATAGGCAAATAGATAGTTAAATAGTAATTCTATCTAGAATCAAATCTGTTTTTCGAATTATAATTTCAAAAATCATAATTAGACTTTAAGCATTTTAGGAAAATACATAAATAATTCAATTAGAAACAAATCTGGTCAATAAATCACCTAGAACCAAAAAAGAATTCGAATTATAATTTTAAATATCATAATTAGACTTAAGCATTTTAGGAAAATACATAAATAATTCATTTAAAACCAAATCTAGTCCTTAGACTTGTGATTTCAAAAATCACATGAATAAATAATTCACTTAATTATATGGTATTTACACTTCCTTGTTGTGAATAAAATTATGGTATTAACATTAATATTAGGCATCTATAAATAAACCAATAGTCCTTATGTAACTTGCTCAATCATAATTTCTTCTCCCACAAAAAGAAATGTTCTCTATTTTTTTTTCTTGAGTGTATGAAAAATATGGCTCACATTGTTGTGGACACGTTGTTTTAATAAGGTGCTTTAACCGTTTTTGTTCTGAAGCTGAATATCCAACCCCCTTTGAAAGAAAATGAATTTAGTGATACAAATATTAACAGGTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTATGGGGTAACAGATGGATCACATTTTTACCTGTTTTTTCAACTTCCAGGTAATAACAATAACAATGATGATAATAGCAATAATGGCGATGGTGATAAGTGAGTATCGTCAATCCCGAGACTCTGATTTCTCAAGACGATTCTGTTACTAGTGCTG</genome_strand>
        <mrna_strand>GAAGGTAAGGGATGATGGTATAGCCTTACATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG...............................................................................TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAACAATAACAATGATGATAATAGCAATAATGGCGATGGTGATAAGTGAGTATCGTCAATCCCGAGACTCTGATTTCTCAAGACGATTCTGTTACTAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341710" ref_strand="+" ref_description="SGN-E341710 [cTOF-9-M22]">
      <seq>gatggagaaggtaagggatgatggtatagccttagatttcgaagtaggagatgaagttgttaagatcatcaacgttaagagctcttccttgccatgtccattattagtattttcacctactactgaaggttcctatcccattctactatttttccatggattccgcctccaacccgactcttacaagtccctcctcctacatatttcttcccatcaatatatcgccgttgctcctaagttctctctaatgacatctcgatgcgaagtaaaaacagcaaaaaaagtagcagagtggttatcagctaagaagctcaactctgtgctgccagagaaagtttttccagacatccagaaagtcgcggtgtcaggccacagcagaggaggtaaaacagcattcgccttagctttagcctatggatcaggagatagcaagggcgaatccatcgtcacttcaggtacactatttcacattcgagtagccaaagatgcatctgtggcggatttgaaaaaagaaataagtaatcaagaaaatcttccagagaatcatttgattctcatgttggatacgggacatggagattctatcatgttgaatgacgacgaaatttcccttgtggattatgggggtaacgnatggatcacattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71786" stop="68688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71486" g_stop="71249" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71169" g_stop="70953" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="455" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70952" i_stop="69181" i_length="1772">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69180" g_stop="68988" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="649" r_length="194" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E341710" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71486" e_stop="71249"/>
          <exon e_start="71169" e_stop="70953"/>
          <exon e_start="69180" e_stop="68988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAGGTATACATACGGCAACAAACTCACTCACTCTGTATTTCATTCATCAATCAAAATTCATTTTTAAAAAATATGTTTGCAGTTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAGGTACCTGAACCTTTTTATCTTACATATATATATGTGCGCAATTTGAATTTCATATTACATCTTAGGAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATCAAATAAATAACACATCATTTTATTACTACCTCCTAATAATTGATGATGTTTGCATTAATTCTATATTTGTATTGAGTGAAGTATATCTATTGAATAAAAATGTTTGTTTGTTATCCTTTTCATTCATTTCTATATTTTCACTTGGAATACATAAATGCTCGTGTGAAACCAACATGTTGAGCAAATATATATATATTCACCCCTTCAAGTTCAATGATCGAATGTCTCTGATACATATTTGTAAAACAATGATCGATCGAGTACCTCATACTATATATCTTACTAAGAAATAAACGTCTCAAATCTCCGATCCATATATATATATATGTCGTGATCAATCATGTTCTCCACAATTGGTGTAATGCACCAAGAATTCGATTTTTTTGTAACTGATATTTTTGAAGTTGTCAAAAATAATATTTGTTATGTATATTAAATAAGTTTTGTATTAAAGAAGTATGCTTAATAAGATAATAGGATAAGAGCTTATTAAGGGTATAAAAGACATTCAATATTTAAAGAATATTTTAGTATGTTTAATTAGAAATATGTTTAGAGCACGTAGATATAAAAGTTATTCAATATAAATATTCATTCTTTTATAATTATATAAATAGGCAAATAGATAGTTAAATAGTAATTCTATCTAGAATCAAATCTGTTTTTCGAATTATAATTTCAAAAATCATAATTAGACTTTAAGCATTTTAGGAAAATACATAAATAATTCAATTAGAAACAAATCTGGTCAATAAATCACCTAGAACCAAAAAAGAATTCGAATTATAATTTTAAATATCATAATTAGACTTAAGCATTTTAGGAAAATACATAAATAATTCATTTAAAACCAAATCTAGTCCTTAGACTTGTGATTTCAAAAATCACATGAATAAATAATTCACTTAATTATATGGTATTTACACTTCCTTGTTGTGAATAAAATTATGGTATTAACATTAATATTAGGCATCTATAAATAAACCAATAGTCCTTATGTAACTTGCTCAATCATAATTTCTTCTCCCACAAAAAGAAATGTTCTCTATTTTTTTTTCTTGAGTGTATGAAAAATATGGCTCACATTGTTGTGGACACGTTGTTTTAATAAGGTGCTTTAACCGTTTTTGTTCTGAAGCTGAATATCCAACCCCCTTTGAAAGAAAATGAATTTAGTGATACAAATATTAACAGGTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTAT-GGGGTAACAGATGGATCACATTTTTA</genome_strand>
        <mrna_strand>GATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG...............................................................................TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTATGGGGGTAACGNATGGATCACATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282002" ref_strand="+" ref_description="SGN-E282002 [cLES-2-B21]">
      <seq>gaaaacaaaaacaaccccctctcaaaatctccgcgctcctcggaatcgatccagttgctaaaggctcctcttgtttctgctcttccaacattctccaatatattccttacagtttcaatcattcagtccctgtagctgtaattggtaccggcttgtctaatagacgagcctatggtgtgtgtccacccgatgcaccaaacggggtgaatcatgctgagtttttcaacgagagtaaacccccttgttactattttttggccaagaattatgggcatactgatatgctggatgaaggggaaaaaataatgggaattatgaagaaaaaagggaaaaaggaaacaaagcacgatctaagaaggactataggaggactttttgtggcttttttcaaggcttatttggaaggtcaagcggatgatttaattaatattattgaatcgcctgggattcgttgtcctattaaacttgatcctgttatatctatcgaagagtaagatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71175" stop="70075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70875" g_stop="70375" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E282002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70875" e_stop="70375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATC</genome_strand>
        <mrna_strand>GAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344043" ref_strand="+" ref_description="SGN-E344043 [cTOF-12-J23]">
      <seq>tgatggagaaggtaagggatgatggtatagccttagatttcgaagtaggagatgaagttgttaagatcatcaacgttaagagctcttccttgccatgtccattattagtattttcacctactactgaaggttcctatcccattctactatttttccatggattccgcctccaacccgactcttacaagtccctcctcctacatatttcttcccatcaatatatcgccgttgctcctaagttctctctaatgacatctcgatgcgaagtaaaaacagcaaaaaaagtagcagagtggttatcagctaagaagctcaactctgtgctgccagagaaagtttttccagacatccagaaagtcgcggtgtcaggccacagcagaggaggaagggcaacccgaaaacaaaaacaaccccctctcaaaatctccgcgctcctcggaatcgatccagttgctaaaggctcctcttgtttctgctcttccaacattctccaatatattccttacagtttcaatcattcagtccctgtagctgtaattggtaccggcttgtctaatagacgagcctatggntgtgtgtccacccgatgcaccaaacggggtgaatcatgctgagtttttcaacgagagtaaacccccttgttactattttttggccaagaattatgggcatactgatatgctggatgaaggggaaaaaatatggggaattatgaagaaaaaagggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71787" stop="70241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71487" g_stop="71249" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71169" g_stop="71025" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="384" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71024" i_stop="70888" i_length="137">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70887" g_stop="70541" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="732" r_length="348" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E344043" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71487" e_stop="71249"/>
          <exon e_start="71169" e_stop="71025"/>
          <exon e_start="70887" e_stop="70541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAGGTATACATACGGCAACAAACTCACTCACTCTGTATTTCATTCATCAATCAAAATTCATTTTTAAAAAATATGTTTGCAGTTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAGGTACCTGAACCTTTTTATCTTACATATATATATGTGCGCAATTTGAATTTCATATTACATCTTAGGAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGG-TGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAG</genome_strand>
        <mrna_strand>TGATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG...............................................................................TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAG.........................................................................................................................................GAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGNTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATATGGGGAATTATGAAGAAAAAAGGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239972" ref_strand="+" ref_description="SGN-E239972 [cLED-29-L1]">
      <seq>gaaggtaagggatgatggtatagccttagatttcgaagtaggagatgaagatgttaagatcatcaacgttaagagctcttccttgccatgtccattattagtattttcacctactactgaagggtcctatcccattctactatttttccatggattccgcctccaacccgactcttacaagtccctcctcctacatatttcttcccatcaatatatcgccgttgctcctaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71780" stop="70949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71480" g_stop="71249" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E239972" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71480" e_stop="71249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG</genome_strand>
        <mrna_strand>GAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGATGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGGTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379234" ref_strand="+" ref_description="SGN-E379234 [TUS-1-D15]">
      <seq>tgtccaggacttccacacaaggacaagatgagttcatgaatgaagtgatgtatattgtgaaacttcagcatagaaatcttgtgaagattctcggatgttgcatcgaaggagaagaaagaatgttgatctatgagtacatgccaagtggaagtcttgattcatttatatttgatgacacacgaagcacggtattagactggtctaagcgctttcacataatcaacgggatagctcggggacttgtgtatctgcatcaagattctcagttgaggatcattcacagggacctgaaagctaacaacattttactagacaatgacatgaatccaaagatatcagacttcggtatagcaagaagttgtgaagatgacaagtttggagccaagacacaccgagtagttggaacatatggctacctctcaccggaatatgctgtacatggtgtctactcggtgaagtcagatgtatttagctttggtgtcttagttcttgaaattgtaagtgggaaagggaacagaaaattctctcatccggatcataaccttaacctccttggacatgcatggacactctataaagaaggtagatcaatggaattactcggggatttccccattggtgtttgttctnacacctgagttatacgatcaatccatgttggtctattgtgtgtgcnacatcgtccagaagatcgtccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="77010" stop="78689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77310" g_stop="77480" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77481" i_stop="77706" i_length="226">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77707" g_stop="77944" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="409" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77945" i_stop="78018" i_length="74">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78019" g_stop="78169" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="560" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78170" i_stop="78249" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78250" g_stop="78389" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="700" r_length="140" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E379234" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77310" e_stop="77480"/>
          <exon e_start="77707" e_stop="77944"/>
          <exon e_start="78019" e_stop="78169"/>
          <exon e_start="78250" e_stop="78389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTGGTAAGGATTTCTCAAAAAAAAATAAAAAAAATTGTGCTTAACAATTACATTTCAGTTGAATAGATGCCCTGTAGGAGTACCCAAATAATCCTCTCGGCCCAAAGTTATGTTCTTTATTGTTACTTTTCTGATAAAAGAAGTTCTTATCTAGTTAGATGTTTGAATCCCACTCTCAGTTTTACCTATTTTGTGTGAATTAATGCTCCAACTATGAAACTTTTAGCAGATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATAGTAAGAACCTTGAGATTATCATAGTATGTTTATCCAGCATTAGTAATGCTAATTTCTGTTTACATTTTATGCAGTGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGGAAAGGGAACAGAAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACATGTAAGGGTTGTGTTTTTCACTGTCCATTAATAAATTATCTCGTAAACATGGTCATGCTAACACGACACTAAAATCTACAGGCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGTTCT-ACACCTGAAGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCAACATCGTCCAGAAGATCGTCCAAG</genome_strand>
        <mrna_strand>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTG..................................................................................................................................................................................................................................ATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATA..........................................................................TGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGGAAAGGGAACAGAAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACAT................................................................................GCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGTTCTNACACCTG-AGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCNACATCGTCCAGAAGATCGTCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201101" ref_strand="+" ref_description="SGN-E201101 [cLEC-10-C2]">
      <seq>tgtccaggacttccacacaaggacaagatgagttcatgaatgaagtgatgtatattgtgaaacttcagcatagaaatcttgtgaagattctcggatgttgcatcgaaggagaagaaagaatgttgatctatgagtacatgccaagtggaagtcttgattcatttatatttgatgacacacgaagcacggtattagactggtctaagcgctttcacataatcaacgggatagctcggggacttgtgtatctgcatcaagattctcagttgaggatcattcacagggacctgaaagctaacaacattttactagacaatgacatgaatccaaagatatcagacttcggtatagcaagaagttgtgaagatgacaagtttggagccaagacacaccgagtagttggaacatatggctacctctcaccggaatatgctgtacatggtgtctactcggtgaagtcagatgtatttagctttggtgtcttagttcttgaaattgtaagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="77010" stop="78415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77310" g_stop="77480" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77481" i_stop="77706" i_length="226">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77707" g_stop="77944" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="409" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77945" i_stop="78018" i_length="74">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78019" g_stop="78115" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="506" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E201101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77310" e_stop="77480"/>
          <exon e_start="77707" e_stop="77944"/>
          <exon e_start="78019" e_stop="78115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTGGTAAGGATTTCTCAAAAAAAAATAAAAAAAATTGTGCTTAACAATTACATTTCAGTTGAATAGATGCCCTGTAGGAGTACCCAAATAATCCTCTCGGCCCAAAGTTATGTTCTTTATTGTTACTTTTCTGATAAAAGAAGTTCTTATCTAGTTAGATGTTTGAATCCCACTCTCAGTTTTACCTATTTTGTGTGAATTAATGCTCCAACTATGAAACTTTTAGCAGATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATAGTAAGAACCTTGAGATTATCATAGTATGTTTATCCAGCATTAGTAATGCTAATTTCTGTTTACATTTTATGCAGTGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGG</genome_strand>
        <mrna_strand>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTG..................................................................................................................................................................................................................................ATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATA..........................................................................TGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279502" ref_strand="+" ref_description="SGN-E279502 [cLER-5-A12]">
      <seq>aaaattctctcatccggatcataaccttaacctccttggacatgcatggacactctataaagaaggtagatcaatggaattactcggggatttccccattggtgtttggtctacacctgaagttatacgatcaatccatgttggtctattgtgtgtgcaacatcgtccagaagatcgtccaagtatgtcttcagtggttatgatgttaaacaatgaaggtgtactgccacctgctaaacaaccagctttcttcgtagaaacaaacacaccacatagtgaattctcttctagtcaacatgcacatagtacagtgaatgagatcaccatcacaacattagatcccagatagtaaattcttcattgcaaatagaaatccttcattcttttcttgtttgtagcaatgtatggcgaaagttcccactccagctactcaagaagagtgcagtcatcttcttgtaacatggtgcaacactgctaacatgtgttaaaacattttctttcaactatttcactacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="77827" stop="79023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78127" g_stop="78169" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78170" i_stop="78249" i_length="80">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78250" g_stop="78731" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="525" r_length="482" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E279502" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78127" e_stop="78169"/>
          <exon e_start="78250" e_stop="78731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACATGTAAGGGTTGTGTTTTTCACTGTCCATTAATAAATTATCTCGTAAACATGGTCATGCTAACACGACACTAAAATCTACAGGCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGTTCTACACCTGAAGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCAACATCGTCCAGAAGATCGTCCAAGTATGTCTTCAGTGGTTATGATGTTAAACAATGAAGGTGTACTGCCACCTGCTAAACAACCAGCTTTCTTCGTAGAAACAAACACACCAGATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTCTTTGTAGCAATGTAGGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAACTTGTTAC</genome_strand>
        <mrna_strand>AAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACAT................................................................................GCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGGTCTACACCTGAAGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCAACATCGTCCAGAAGATCGTCCAAGTATGTCTTCAGTGGTTATGATGTTAAACAATGAAGGTGTACTGCCACCTGCTAAACAACCAGCTTTCTTCGTAGAAACAAACACACCACATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTGTTTGTAGCAATGTATGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242847" ref_strand="+" ref_description="SGN-E242847 [cLED-31-L18]">
      <seq>aacaaccagctttcttcgtagaaacaaacacaccagatagtgaattctcttctagtcaacatgcacatagtacagtgaatgagatcaccatcacaacattagatcccagatagtaaattcttcattgcaaatagaaatccttcattcttttcttctttgtagcaatgtagggcgaaagttcccactccagctactcaagaagagtgcagtcatcttcttgtaacatggtgcaacactgctaacatgtgttaaaacattttctttcaactatttcactacaacttgttactttgtacaaaggtgaataggaaatattatgtcctatcccaaatagtttgagtttaacgcagaattgcccgattgatggaccaattttgctttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="78143" stop="79127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78443" g_stop="78827" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E242847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78443" e_stop="78827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCAGCTTTCTTCGTAGAAACAAACACACCAGATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTCTTTGTAGCAATGTAGGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAACTTGTTACTTTGTACAAAGGTGAATAGGAAATATTATGTCCTATCCCAAATAGTTTGAGTTTAACGCAGAATTGCCCGATTGATGGACCAATTTTGCTTTCACT</genome_strand>
        <mrna_strand>AACAACCAGCTTTCTTCGTAGAAACAAACACACCAGATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTCTTTGTAGCAATGTAGGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAACTTGTTACTTTGTACAAAGGTGAATAGGAAATATTATGTCCTATCCCAAATAGTTTGAGTTTAACGCAGAATTGCCCGATTGATGGACCAATTTTGCTTTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537950" ref_strand="+" ref_description="SGN-E537950 [TUS-56-N3](-)">
      <seq>agttcgccttgttgccccaggaaaatggatgttgtgtgcatcatttgttctgcctgagacagtggcatttgctaaattaactctataggtaattattgtttgagtaattgaagacttcgtcaacaactacatgttagtgtctttcccagtttcggatgtagatgagttttatcgaaagcatatataggagaaaaattataatgagagtttctaagttgaatatcttgttctgtattctgtttttagatttctagttctttacttgaggcgttgaggttgtgtataagcagttcacaagccttgtctgcaagattttttttgttttggtacttctcttattatgttttctgtgtactgttgcttcttgaggatgcttgactataaaataaactgttataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="79692" stop="78693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79392" g_stop="78993" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E537950" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79392" e_stop="78993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGCCTTGTTGCACCAGGAAAATGGATGTTGTGTGCATCATTTGTTCTGCCTGAGACAGTGGCATTTGCTAAATTAACTCTATAGGTAATTATTGTTTGAGTAATTGAAGACTTCGTCAACAACTACATGTTAGTGTCTTTCCCAGTTTCGGATGTAGATGAGTTTTATCGAAAGCATATATAGGAGAAAAATTATAATGAGAGTTTCTAAGTTGAATATCTTGTTCTGTATTCTGTTTTTAGATTTCTAGTTCTTTACTTGAGGCGTTGAGGTTGTGTATAAGCAGTTCACAAGCCTTGTCTGCAAGATTTTTTTTGTTTTGGTACTTCTCTTATTATGTTTTCTGTGTACTGTTGCTTCTTGAGGATGCTTGACTATAAAATAAACTGTTATAAG</genome_strand>
        <mrna_strand>AGTTCGCCTTGTTGCCCCAGGAAAATGGATGTTGTGTGCATCATTTGTTCTGCCTGAGACAGTGGCATTTGCTAAATTAACTCTATAGGTAATTATTGTTTGAGTAATTGAAGACTTCGTCAACAACTACATGTTAGTGTCTTTCCCAGTTTCGGATGTAGATGAGTTTTATCGAAAGCATATATAGGAGAAAAATTATAATGAGAGTTTCTAAGTTGAATATCTTGTTCTGTATTCTGTTTTTAGATTTCTAGTTCTTTACTTGAGGCGTTGAGGTTGTGTATAAGCAGTTCACAAGCCTTGTCTGCAAGATTTTTTTTGTTTTGGTACTTCTCTTATTATGTTTTCTGTGTACTGTTGCTTCTTGAGGATGCTTGACTATAAAATAAACTGTTATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537952" ref_strand="+" ref_description="SGN-E537952 [TUS-56-N3]">
      <seq>ctaatttgcaacagaaagggctaaaatggctctgtatccattgcccaccgccattatactcaacagaatcaccccttttacttcccgcttcttccccaaacctctatcttcttccctttccgcctccgtcgccgccattacctcgaccttaccacaacacctttcctatggaccttccctccacaaaggccacaaaacttcacaccgaaactccgatgaagaaagcttcactagagtcttcgatatcactgctttacgagtccctgcagaacaatgtttctcactcgagagcagattacgcggacaccttttaaattggccgcgcattcgtaacattgctagggttgccggtgatgatattgatgacgacttgaaggagtttattggaaatgataatactactgatgatgaaacacaaacagtattggaacggagaatctatgggaaaggtgaaggtgatggggagaaaatgtgttcggtattgtatagagataagcttgcaaagactttcaattcgataggatatgtaaagtttgagaatttggctaaaatatcgcggccgaagaagaaaaatggaagagagaggaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="83943" stop="82750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83643" g_stop="83050" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E537952" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83643" e_stop="83050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTTGCAACAGAAAGGGCTAAAATGGCTCTGTATCCATTGCCCACCGCCATTATACTCAACAGAATCACCCCTTTTACTTCCCGCTTCTTCCCCAAACCTCTATCTTCTTCCCTTTCCGCCTCCGTCGCCGCCATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGATGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAGCAGATTACGCGGACACCTTTTAAATTGGCCGCGCATTCGTAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGAGAATCTATGGGAAAGGTGAAGGTGATGGGGAGAAAATGTGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTTTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAAGAAAAAATGGAAGAGAGAGGAAAAAGA</genome_strand>
        <mrna_strand>CTAATTTGCAACAGAAAGGGCTAAAATGGCTCTGTATCCATTGCCCACCGCCATTATACTCAACAGAATCACCCCTTTTACTTCCCGCTTCTTCCCCAAACCTCTATCTTCTTCCCTTTCCGCCTCCGTCGCCGCCATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGATGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAGCAGATTACGCGGACACCTTTTAAATTGGCCGCGCATTCGTAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGAGAATCTATGGGAAAGGTGAAGGTGATGGGGAGAAAATGTGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTTTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAAG-AAAAATGGAAGAGAGAGGAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265840" ref_strand="+" ref_description="SGN-E265840 [cLEI-11-I4]">
      <seq>aaagggctaaaatggctctgcttccattgcccaccgacattgtactcaacagaatcaccccttctacttgacgcttcttccccaaacctatatcttcttacctttccgcctccgtctccgacattacctcgaccttaccacaacacctttcctatggaccttccctccacaaaggccacaaaacttcacaccgaaactccgaagaagaaagcttcactagagtcttcgatatcactgctttacgagtccctgcagaacaatgtttctcactcgagaacagattacacggacaccttttaaattggccgcgcattcataacattgctagggttgccggtgatgatattgatgacgacttgaaggagtttattggaaatgataatactactgatgatgaaacacaaacagtattggaacggataatctatgggaaaggtgaaagtgatggggagaaaatgcgttcggtattgtatagagataagcttgcaaagactctcaattcgataggatatgtaaagtttgagaatttggctaaaatatcgcggccgaagaataataaatgggagagagaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="83929" stop="82753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83629" g_stop="83053" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E265840" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83629" e_stop="83053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGCTAAAATGGCTCTGTATCCATTGCCCACCGCCATTATACTCAACAGAATCACCCCTTTTACTTCCCGCTTCTTCCCCAAACCTCTATCTTCTTCCCTTTCCGCCTCCGTCGCCGCCATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGATGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAGCAGATTACGCGGACACCTTTTAAATTGGCCGCGCATTCGTAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGAGAATCTATGGGAAAGGTGAAGGTGATGGGGAGAAAATGTGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTTTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAAGAAAAAATGGAAGAGAGAGGAAAA</genome_strand>
        <mrna_strand>AAAGGGCTAAAATGGCTCTGCTTCCATTGCCCACCGACATTGTACTCAACAGAATCACCCCTTCTACTTGACGCTTCTTCCCCAAACCTATATCTTCTTACCTTTCCGCCTCCGTCTCCGACATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGAAGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAACAGATTACACGGACACCTTTTAAATTGGCCGCGCATTCATAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGATAATCTATGGGAAAGGTGAAAGTGATGGGGAGAAAATGCGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTCTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAATAATAAATGGGAGAGAGAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724987" ref_strand="+" ref_description="SGN-E724987 [FC25DA02]">
      <seq>aatcggccgaattgactcaccgtttctctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttnnnananaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87158" stop="88622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87450" g_stop="87719" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88323" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="700" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="749"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E724987" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87450" e_stop="87719"/>
          <exon e_start="87894" e_stop="88323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATCAATATCACTCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGACTCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721416" ref_strand="+" ref_description="SGN-E721416 [FC13DC12]">
      <seq>gatcactcaccgtttctctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttcaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87161" stop="88649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87460" g_stop="87719" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88348" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="715" r_length="455" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="752"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E721416" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87460" e_stop="87719"/>
          <exon e_start="87894" e_stop="88348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACTCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCT</genome_strand>
        <mrna_strand>GATCACTCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722131" ref_strand="+" ref_description="SGN-E722131 [FC16BC03]">
      <seq>gactcaccgtttctctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaaaagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttanaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87164" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87463" g_stop="87719" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="661" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="683"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E722131" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87463" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>GACTCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAAAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718270" ref_strand="+" ref_description="SGN-E718270 [FC04AG06]">
      <seq>gggcgattggcggccaatcggccgaattgaccgtttctctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttnnnnaaaaaaananaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87164" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87466" g_stop="87719" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="281" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88357" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="745" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="777"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E718270" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87466" e_stop="87719"/>
          <exon e_start="87894" e_stop="88357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGCA</genome_strand>
        <mrna_strand>TGACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718297" ref_strand="+" ref_description="SGN-E718297 [FC04BA11]">
      <seq>cggccaaatcggccgaattgactcaccgtttctccctataaggataagtcctattcatattttttgtgtgttatacccagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87158" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87466" g_stop="87719" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="275" r_length="253" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="679" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="713"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E718297" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87466" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>TCACCGTTTCTCCCTATA-AGGATAAGTCCTATTCATATTTTTTGTGTGTTATACCCAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719156" ref_strand="+" ref_description="SGN-E719156 [FC06DF11]">
      <seq>ttctctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttnnnnnaaaannnnnnnnnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87173" stop="88595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87473" g_stop="87719" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88300" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="654" r_length="407" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="711"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E719156" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87473" e_stop="87719"/>
          <exon e_start="87894" e_stop="88300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATT</genome_strand>
        <mrna_strand>TTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTNNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343107" ref_strand="+" ref_description="SGN-E343107 [cTOF-11-P8]">
      <seq>tctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatgggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttggttccatttttaatgaaatatcaactcaatgagttctatcttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87176" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87476" g_stop="87719" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88358" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="710" r_length="466" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E343107" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87476" e_stop="87719"/>
          <exon e_start="87894" e_stop="88358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTAT-GGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGCAG</genome_strand>
        <mrna_strand>TCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGGTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715195" ref_strand="+" ref_description="SGN-E715195 [FB13CE01]">
      <seq>ctctatacagcataaatcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagaccaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgctgatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaaggtggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagttgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaataanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87177" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87477" g_stop="87719" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="647" r_length="404" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="658"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E715195" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87477" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>CTCTATACAGCATAAATCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACCAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCTGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGGTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTTGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546556" ref_strand="+" ref_description="SGN-E546556 [TUS-69-P18](-)">
      <seq>ctctatacagcataaatcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaggccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttcttttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87177" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87477" g_stop="87719" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="647" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="657"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E546556" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87477" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>CTCTATACAGCATAAATCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAGGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTTTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546557" ref_strand="+" ref_description="SGN-E546557 [TUS-69-P18]">
      <seq>ctctatacagcataaatcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaggccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttcttttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87177" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87477" g_stop="87719" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="647" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="657"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E546557" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87477" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>CTCTATACAGCATAAATCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAGGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTTTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734780" ref_strand="+" ref_description="SGN-E734780 [LB13CC09]">
      <seq>ctctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanaaannnnttcgggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87177" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87477" g_stop="87719" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="647" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="701"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E734780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87477" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>CTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323138" ref_strand="+" ref_description="SGN-E323138 [cTOB-28-N23]">
      <seq>tctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatgggagactatgttcttaaattgtctctnctttgttcatttttaatgaatatcaactcaatgagttctatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87178" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87478" g_stop="87719" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88353" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="700" r_length="458" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E323138" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87478" e_stop="87719"/>
          <exon e_start="87894" e_stop="88353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTT</genome_strand>
        <mrna_strand>TCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGGAGACTATGTTCTTAAATTGTCTCTNCTT-TGTTCATTTTTAATG-AATATCAACTCAATGAGTTCTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320414" ref_strand="+" ref_description="SGN-E320414 [cTOB-22-B1]">
      <seq>tctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaggaaggctgaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgacgaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87178" stop="88409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87478" g_stop="87719" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88110" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="459" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E320414" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87478" e_stop="87719"/>
          <exon e_start="87894" e_stop="88110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAG</genome_strand>
        <mrna_strand>TCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAGGAAGGCTGAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGACGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306422" ref_strand="+" ref_description="SGN-E306422 [cLEX-13-L14]">
      <seq>tctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87178" stop="88395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87478" g_stop="87719" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88095" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="444" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E306422" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87478" e_stop="87719"/>
          <exon e_start="87894" e_stop="88095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATG</genome_strand>
        <mrna_strand>TCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317585" ref_strand="+" ref_description="SGN-E317585 [cTOB-8-G11]">
      <seq>tctatacagcataagtcctattcaggttttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87178" stop="88377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87478" g_stop="87719" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88077" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="426" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E317585" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87478" e_stop="87719"/>
          <exon e_start="87894" e_stop="88077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCAT</genome_strand>
        <mrna_strand>TCTATACAGCATAAGTCCTATTCAGGTTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712778" ref_strand="+" ref_description="SGN-E712778 [FB05DB11]">
      <seq>ctatacagcataagtcctattcatattttttgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87179" stop="88637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87479" g_stop="87719" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88337" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="683" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E712778" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87479" e_stop="87719"/>
          <exon e_start="87894" e_stop="88337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACT</genome_strand>
        <mrna_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTG--TTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712857" ref_strand="+" ref_description="SGN-E712857 [FB06AA12]">
      <seq>ctatacagcataagtcctattcatattttttgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattaactggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggaggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87179" stop="88636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87479" g_stop="87719" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88336" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="682" r_length="443" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E712857" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87479" e_stop="87719"/>
          <exon e_start="87894" e_stop="88336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAAC</genome_strand>
        <mrna_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTG--TTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAACTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGAGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309674" ref_strand="+" ref_description="SGN-E309674 [cLEY-26-C13]">
      <seq>ctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87179" stop="88412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87479" g_stop="87719" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88112" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="460" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E309674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87479" e_stop="87719"/>
          <exon e_start="87894" e_stop="88112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGA</genome_strand>
        <mrna_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294766" ref_strand="+" ref_description="SGN-E294766 [cLET-17-B9]">
      <seq>ctatacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaatacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87179" stop="88010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87479" g_stop="87710" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E294766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87479" e_stop="87710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTT</genome_strand>
        <mrna_strand>CTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342949" ref_strand="+" ref_description="SGN-E342949 [cTOF-11-M20]">
      <seq>tacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatnggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatgggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87182" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87482" g_stop="87719" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88304" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="651" r_length="413" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E342949" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87482" e_stop="87719"/>
          <exon e_start="87894" e_stop="88304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAAT-GGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTAT-GGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCT</genome_strand>
        <mrna_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATNGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343085" ref_strand="+" ref_description="SGN-E343085 [cTOF-11-H8]">
      <seq>tacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttgtatggtagtctgtatatataaatgaagggatgaatgggagactatgttcttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87182" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87482" g_stop="87719" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88300" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="645" r_length="407" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E343085" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87482" e_stop="87719"/>
          <exon e_start="87894" e_stop="88300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATT</genome_strand>
        <mrna_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTGTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGGAGACTATGTTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332263" ref_strand="+" ref_description="SGN-E332263 [cTOD-17-I22]">
      <seq>tacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaaatggagactatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87182" stop="88592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87482" g_stop="87719" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88292" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="637" r_length="399" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E332263" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87482" e_stop="87719"/>
          <exon e_start="87894" e_stop="88292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTT</genome_strand>
        <mrna_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAAATGGAGACTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318975" ref_strand="+" ref_description="SGN-E318975 [cTOB-14-L19]">
      <seq>tacagcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87182" stop="88517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87482" g_stop="87719" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88217" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="562" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E318975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87482" e_stop="87719"/>
          <exon e_start="87894" e_stop="88217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCT</genome_strand>
        <mrna_strand>TACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298688" ref_strand="+" ref_description="SGN-E298688 [cLET-44-F9]">
      <seq>acagcataagtcctattcatattttttgagtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcaccaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcacctagggataacacgaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaatagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttgtgctttctaagaaagctggctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87183" stop="88377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87483" g_stop="87719" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88077" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="421" r_length="184" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E298688" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87483" e_stop="87719"/>
          <exon e_start="87894" e_stop="88077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCAT</genome_strand>
        <mrna_strand>ACAGCATAAGTCCTATTCATATTTTTTGAGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCACCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCACCTAGGGATAACACGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAATAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTGTGCTTTCTAAGAAAGCTGGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321597" ref_strand="+" ref_description="SGN-E321597 [cTOB-25-I14]">
      <seq>gcataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattatgtggaaggataagagaaaggtttctaggggtgagggttaaagttggttttttagtaattggtgtttctgggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87186" stop="88477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87486" g_stop="87719" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88177" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="519" r_length="285" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E321597" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87486" e_stop="87719"/>
          <exon e_start="87894" e_stop="88177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAG-AAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTT</genome_strand>
        <mrna_strand>GCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTATGTGGAAGGATAAGAGAAAGGTTTCTAGGGGTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714682" ref_strand="+" ref_description="SGN-E714682 [FB12AE11]">
      <seq>cataaatcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagaccaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgctgatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaaggtggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagttgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87187" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87487" g_stop="87719" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88357" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="697" r_length="464" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E714682" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87487" e_stop="87719"/>
          <exon e_start="87894" e_stop="88357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGCA</genome_strand>
        <mrna_strand>CATAAATCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACCAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCTGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGGTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTTGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344758" ref_strand="+" ref_description="SGN-E344758 [cTOF-21-J17]">
      <seq>ataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatnggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttntatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87188" stop="88631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87488" g_stop="87719" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88326" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="666" r_length="434" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E344758" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87488" e_stop="87719"/>
          <exon e_start="87894" e_stop="88326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAAT-GGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATG</genome_strand>
        <mrna_strand>ATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATNGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTNTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346975" ref_strand="+" ref_description="SGN-E346975 [cTOF-25-I23]">
      <seq>ataagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggggtagtcgaagcttctaggttttatggtagtctgtntatataaatgaaaggatgaatggaagactatgttcttaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87188" stop="88600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87488" g_stop="87719" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88300" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="639" r_length="407" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E346975" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87488" e_stop="87719"/>
          <exon e_start="87894" e_stop="88300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATT</genome_strand>
        <mrna_strand>ATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGGGTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTNTATATAAATGAAAGGATGAATGGAAGACTATGTTCTTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301992" ref_strand="+" ref_description="SGN-E301992 [cLEX-3-P8]">
      <seq>ataagtcctattcatattttttgcgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgctttctaagaaagctggctcatcaaagccctctgcagatgaagattangtggaaggataagagaaggtttctagggttgagggttaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87188" stop="88445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87488" g_stop="87719" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88145" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="484" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E301992" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87488" e_stop="87719"/>
          <exon e_start="87894" e_stop="88145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGT</genome_strand>
        <mrna_strand>ATAAGTCCTATTCATATTTTTTGCGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTTCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTANGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345251" ref_strand="+" ref_description="SGN-E345251 [cTOF-13-O18]">
      <seq>taagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87189" stop="88649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87489" g_stop="87719" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88355" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="693" r_length="462" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E345251" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87489" e_stop="87719"/>
          <exon e_start="87894" e_stop="88355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCG</genome_strand>
        <mrna_strand>TAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724617" ref_strand="+" ref_description="SGN-E724617 [FC24CF06]">
      <seq>aagtcctattcatattttttgtgtgcccccaaagattccaatggcaggaagaggcaagactcttggttccggtgcagcaaaaaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaaaagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcaaatgaaaattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggggtttctgggtcttagattccatagatattaggtgaaatcaattatgttttttctgttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87190" stop="88523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87490" g_stop="87719" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88223" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="560" r_length="331" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E724617" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87490" e_stop="87719"/>
          <exon e_start="87894" e_stop="88223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATG-TTTTTCTGTTGGT</genome_strand>
        <mrna_strand>AAGTCCTATTCATATTTTTTGTGTG-CCCCCAAAGATTCCAATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAAAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAAAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAAATGAAAATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGGGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTTCTGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289618" ref_strand="+" ref_description="SGN-E289618 [cLET-4-F5]">
      <seq>aagtcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87190" stop="88237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87490" g_stop="87719" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="87937" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="274" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E289618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87490" e_stop="87719"/>
          <exon e_start="87894" e_stop="87937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGAC</genome_strand>
        <mrna_strand>AAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318752" ref_strand="+" ref_description="SGN-E318752 [cTOB-11-C15]">
      <seq>tcctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataacctttttcttcctaagaaagctggctcatcaaagccctctgcagatgaagattatgtggaaggataagagaaggtttctagggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87193" stop="88435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87493" g_stop="87719" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88135" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="469" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E318752" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87493" e_stop="87719"/>
          <exon e_start="87894" e_stop="88135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGA</genome_strand>
        <mrna_strand>TCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTTCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTATGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346371" ref_strand="+" ref_description="SGN-E346371 [cTOF-23-M15]">
      <seq>ctattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87195" stop="88649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87495" g_stop="87719" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88356" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="688" r_length="463" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E346371" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87495" e_stop="87719"/>
          <exon e_start="87894" e_stop="88356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGC</genome_strand>
        <mrna_strand>CTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345514" ref_strand="+" ref_description="SGN-E345514 [cTOF-18-O3]">
      <seq>tattcatattttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87196" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87496" g_stop="87719" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88356" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="687" r_length="463" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E345514" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87496" e_stop="87719"/>
          <exon e_start="87894" e_stop="88356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGC</genome_strand>
        <mrna_strand>TATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713004" ref_strand="+" ref_description="SGN-E713004 [FB06BG12]">
      <seq>attttttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagaccaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgatatgcccaacatccataaccttttgcttcctaaaaaagctggctcatcaaagccctctgctgatgaagattaggtggaaggataagagaaggtttctagggttgagggttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87203" stop="88442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87503" g_stop="87719" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88142" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="466" r_length="249" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E713004" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87503" e_stop="87719"/>
          <exon e_start="87894" e_stop="88142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAA</genome_strand>
        <mrna_strand>ATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACCAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGATATGCCCAACATCCATAACCTTTTGCTTCCTAAAAAAGCTGGCTCATCAAAGCCCTCTGCTGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746290" ref_strand="+" ref_description="SGN-E746290 [GI|47104764]">
      <seq>tttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87207" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87507" g_stop="87719" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88354" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="674" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="675" polyA_stop="691"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E746290" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87507" e_stop="87719"/>
          <exon e_start="87894" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>TTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317558" ref_strand="+" ref_description="SGN-E317558 [cTOB-17-K21]">
      <seq>ttttgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttgtttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87208" stop="88516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87508" g_stop="87719" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88216" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="535" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E317558" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87508" e_stop="87719"/>
          <exon e_start="87894" e_stop="88216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTC</genome_strand>
        <mrna_strand>TTTTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGTTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284787" ref_strand="+" ref_description="SGN-E284787 [cLES-3-D22]">
      <seq>ttgtgtgttatacagagattccgatggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87208" stop="88394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87508" g_stop="87719" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88094" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="413" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E284787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87508" e_stop="87719"/>
          <exon e_start="87894" e_stop="88094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGAT</genome_strand>
        <mrna_strand>TTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344277" ref_strand="+" ref_description="SGN-E344277 [cTOF-16-M9]">
      <seq>gatacaaactattccgaaggcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattatgtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatacatattatgtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87225" stop="88590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87523" g_stop="87719" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="205" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88291" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="603" r_length="398" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E344277" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87523" e_stop="87719"/>
          <exon e_start="87894" e_stop="88291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGT</genome_strand>
        <mrna_strand>CTATTCCGAAGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTATGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATACATATTATGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342167" ref_strand="+" ref_description="SGN-E342167 [cTOF-10-J15]">
      <seq>gcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctatatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87234" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87534" g_stop="87719" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88360" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="653" r_length="467" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E342167" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87534" e_stop="87719"/>
          <exon e_start="87894" e_stop="88360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGCAGTT</genome_strand>
        <mrna_strand>GCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTATATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339301" ref_strand="+" ref_description="SGN-E339301 [cTOF-4-N5]">
      <seq>gcaggaagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87234" stop="88225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87534" g_stop="87719" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="87925" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="218" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E339301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87534" e_stop="87719"/>
          <exon e_start="87894" e_stop="87925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGA</genome_strand>
        <mrna_strand>GCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317531" ref_strand="+" ref_description="SGN-E317531 [cTOB-17-C7]">
      <seq>aagaggcaagactcttggttccggtgcagcaaagaaggctcaatctcggagtagcaaagccggtcttcaatttccggtcggtcgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87239" stop="88477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87539" g_stop="87719" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88177" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="465" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E317531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87539" e_stop="87719"/>
          <exon e_start="87894" e_stop="88177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTT</genome_strand>
        <mrna_strand>AAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222376" ref_strand="+" ref_description="SGN-E222376 [cLEL-16-I17](-)">
      <seq>cgtattgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggacgactggaagactatgttcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87321" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87621" g_stop="87719" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="503" r_length="404" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="523"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E222376" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87621" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>CGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGACGACTGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234905" ref_strand="+" ref_description="SGN-E234905 [cLEL-6-F18](-)">
      <seq>ttgctcgttttctgaaagccggcaagtatgccgagcgtgttggtgctggagctcccgtgtaccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87325" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87625" g_stop="87719" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="499" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="514"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E234905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87625" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>TTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234809" ref_strand="+" ref_description="SGN-E234809 [cLEL-6-F18](-)">
      <seq>gcgtgttggtgctggagctcccgtgtacctagcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87359" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87659" g_stop="87719" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88297" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="465" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="480"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E234809" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87659" e_stop="87719"/>
          <exon e_start="87894" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>GCGTGTTGGTGCTGGAGCTCCCGTGTACCTAGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339863" ref_strand="+" ref_description="SGN-E339863 [cTOF-3-A16]">
      <seq>taccttgcagctgttctcgaataccttgctgctgaggtgcttgaattagctggaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87384" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87684" g_stop="87719" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87894" g_stop="88354" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="497" r_length="461" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="510"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E339863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87684" e_stop="87719"/>
          <exon e_start="87894" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAGGTGAATTTTGGTTTATCTTCGTTAAATTCTTTCAGTTTTTGGTTTTTTCAATTTCTAGGGTTTCTAATTTGGTAATTAGCCATGGTTTTTTTTATCAGAAAGTTGATTTTTTTCTCTATGTTTTGTATTTTTGCCTAGTGTTTCTGATTTTGTATGTGAATTTTGGTATTTTAGGTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>TACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG..............................................................................................................................................................................GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352337" ref_strand="+" ref_description="SGN-E352337 [cTOS-9-G2]">
      <seq>gaaatgcagctagggataacaagaagactaggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaaaaaaaaaaaaaaaaaccgacactgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87610" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87910" g_stop="88354" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="467"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E352337" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87910" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>GAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239065" ref_strand="+" ref_description="SGN-E239065 [cLEL-9-J1](-)">
      <seq>agaagactaggatagtcccaaggcatattcagttggctgtgaggaccgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaaccaccaactcaatgagttctatcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87631" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87931" g_stop="88354" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E239065" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87931" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAA-TATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>AGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGACCGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAACCACCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230595" ref_strand="+" ref_description="SGN-E230595 [cLEL-35-D12](-)">
      <seq>aggatagtcccaaggcatattcagttggctgtgaggaacaatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87639" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87939" g_stop="88354" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="438"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E230595" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87939" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>AGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACAATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226149" ref_strand="+" ref_description="SGN-E226149 [cLEL-31-K5](-)">
      <seq>aggatagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87639" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87939" g_stop="88354" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="432"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E226149" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87939" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>AGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222624" ref_strand="+" ref_description="SGN-E222624 [cLEL-16-I17](-)">
      <seq>atagtcccaaggcatattcagttggctgtgaggaacgatgaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatccataaccttttgcttcctaagaaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttcttaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87642" stop="88598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87942" g_stop="88297" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="378"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E222624" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87942" e_stop="88297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAG-AAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCT-AGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</genome_strand>
        <mrna_strand>ATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238702" ref_strand="+" ref_description="SGN-E238702 [cLEL-9-J1](-)">
      <seq>attcagttggctgtgaggaacgatgaaagagctgagcaagctgcttggtgatgtgaccattgctaatggtggtgttatgcccaacatcccagaccttttgcttcctaagaaagctggctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87657" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87957" g_stop="88354" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="418"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E238702" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87957" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGTTGGCTGTGAGGAACGATG-AAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>ATTCAGTTGGCTGTGAGGAACGATGAAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCCAGACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226053" ref_strand="+" ref_description="SGN-E226053 [cLEL-31-K5](-)">
      <seq>gctcatcaaagccctctgcagatgaagattaggtggaaggataagagaaggtttctagggttgagggttaaagttggttttttagtaattggtgtttctgggtcttagattccatagatattaggtgaaatcaattatgtttttctgttggtttagtcgaagcttctaggttttatggtagtctgtatatataaatgaagggatgaatggaagactatgttcttaaattgtctctctttgtttccatttttaatgaaatatcaactcaatgagttctatcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="87772" stop="88653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88072" g_stop="88354" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="299"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E226053" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88072" e_stop="88354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTC</genome_strand>
        <mrna_strand>GCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315003" ref_strand="+" ref_description="SGN-E315003 [cTOA-31-O20]">
      <seq>tgagaaattgaatcattttcgcccttgtttgctttcatacattagttttgtttattgccgtttttcaatctttcagcacctttactgcaaaattcaaagcaaacggtagtagatgtagaagaatgttgttttgagtttcaattcacgatcccacatccataaatttctccgacatcccattccccctttctctctttgttaccataatttcaaatggctcctaagaaccagaacaagccgccacttcgtactctttcagcactcccttctgatagtaactacacagcaggtgaggtttcattagagaagagaaggagaatagggaatccaaaaataccgtccacagctactggtgcaagaacccggcaggcattagcagtggtgaatgaggttgcagatgtgcctcccgctagtggtccgccaagtaatgcaggttcagacggcgggatagttgagtttagcaaagaagaagttgaagctttactcactgagaaattgaaaaccaagaacaagtataatacaaaggtaagtggatgaactattcttcagattaatggtaatactggtatgaatgtggttgtggttttggttattttgttaattaaggtgctaacagtaaagttaacagaagtagccaattctgtgcgtggaaagttaactgttttcatattaactgaatatgtatctgcttaatgtatattgatgcaaagatttctactacttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="91983" stop="93621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92283" g_stop="92555" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92556" i_stop="92868" i_length="313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92869" g_stop="93321" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="726" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E315003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92283" e_stop="92555"/>
          <exon e_start="92869" e_stop="93321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAATTGAATCATTTTCGCCCTTGTTTGCTTTCATACATTAGTTTTGTTTATTGCCGTTTTTCAATCTTTCAGCACCTTTACTGCAAAATTCAAAGCAAACGGTAGTAGATGTAGAAGAATGTTGTTTTGAGTTTCAATTCACGATCCCACATCCATAAATTTCTCCGACATCCCATTCCCCCTTTCTCTCTTTGTTACCATAATTTCAAATGGCTCCTAAGAACCAGAACAAGCCGCCACTTCGTACTCTTTCAGCACTCCCTTCTGATGTAAGTTTTCTCCAGAATTCATTTTTACTCTATATATCCTCATCGGTTTGTACTTTGATTATGCTCATTTCTTCTGATTGTGTAGTTGAAATTGACGAATTTCACATTTCTGTGCATTTTAGGACTCATTTTGTTATCCTACCTTTCAATGTTTTTGCTTTTTTTGCTGTGGAGTTTCATTTTCTCTACTGGGTGTTTCTAGTTTTGATGTTCATGGTCAAAATTTCCTAATTTGATTGTGTGGGTTAGGTTATTGTGATGTTTAAGTGAAGAAGTTCCTAATGTTGGATAGTTTACTGTTTTTGGTTTGCAGAGTAACTACACAGCAGGTGAGGTTTCATTAGAGAAGAGAAGGAGAATAGGGAATCCAAAAATACCGTCCACAGCTACTGGTGCAAGAACCCGGCAGGCATTAGCAGTGGTGAATGAGGTTGCAGATGTGCCTCCCGCTAGTGGTCCGCCAAGTAATGCAGGTTCAGACGGCGGGATAGTTGAGTTTAGCAAAGAAGAAGTTGAAGCTTTACTCACTGAGAAATTGAAAACCAAGAACAAGTATAATACAAAGGTAAGTGGATGAACTATTCTTCAGATTAATGGTAATACTGGTATGAATGTGGTTGTGGTTTTGGTTATTTTGTTAATTAAGGTGCTAACAGTAAAGTTAACAGAAGTAGCCAATTCTGTGCGTGGAAAGTTAACTGTTTTCATATTAACTGAATATGTATCTGCTTAATGTATATTGATGCAAAGATTTCTACTACTTCTA</genome_strand>
        <mrna_strand>TGAGAAATTGAATCATTTTCGCCCTTGTTTGCTTTCATACATTAGTTTTGTTTATTGCCGTTTTTCAATCTTTCAGCACCTTTACTGCAAAATTCAAAGCAAACGGTAGTAGATGTAGAAGAATGTTGTTTTGAGTTTCAATTCACGATCCCACATCCATAAATTTCTCCGACATCCCATTCCCCCTTTCTCTCTTTGTTACCATAATTTCAAATGGCTCCTAAGAACCAGAACAAGCCGCCACTTCGTACTCTTTCAGCACTCCCTTCTGAT.........................................................................................................................................................................................................................................................................................................................AGTAACTACACAGCAGGTGAGGTTTCATTAGAGAAGAGAAGGAGAATAGGGAATCCAAAAATACCGTCCACAGCTACTGGTGCAAGAACCCGGCAGGCATTAGCAGTGGTGAATGAGGTTGCAGATGTGCCTCCCGCTAGTGGTCCGCCAAGTAATGCAGGTTCAGACGGCGGGATAGTTGAGTTTAGCAAAGAAGAAGTTGAAGCTTTACTCACTGAGAAATTGAAAACCAAGAACAAGTATAATACAAAGGTAAGTGGATGAACTATTCTTCAGATTAATGGTAATACTGGTATGAATGTGGTTGTGGTTTTGGTTATTTTGTTAATTAAGGTGCTAACAGTAAAGTTAACAGAAGTAGCCAATTCTGTGCGTGGAAAGTTAACTGTTTTCATATTAACTGAATATGTATCTGCTTAATGTATATTGATGCAAAGATTTCTACTACTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217845" ref_strand="+" ref_description="SGN-E217845 [cLEL-23-D14](-)">
      <seq>agcatgtgcctttaggaattcaaagctcacataccttctccagccctgtctaggtggtaactcgaagacattaatgtttgttaatgtttcaccggatcctccatctgtgggtgaatccctgtgttcactccgatttgctgcacgggttaatgcttgtgagattgggatcccaaggcgtcaaactagcttgcgtcccatagattctcgcctaagcattggctaacattttagcggaacactcgttctagcttttagaattgttttgtctgtaattctgtatggcagtttgatatttaactgagaaactatattacctctaacaacatccacctccaatttgtatagtggataaagtattttctttgtatcagtaatagcatatggggctttgtattactatacttgtcattttttatgaggagttacctgtgataatttacctcttcttttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98253" stop="99484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98553" g_stop="98596" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98597" i_stop="98770" i_length="174">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98771" g_stop="99181" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="452" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="469"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E217845" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98553" e_stop="98596"/>
          <exon e_start="98771" e_stop="99181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGTGCCTTTTAGGAATTCAAAGCTCACATACCTTCTCCAGGTAAAAATGATTATTCAAGCTCCTAGTTAAAATACATGGTTCTGGTTAATTTCCTAGGCTGGTAAAGATAATACTTTTAGGTTTGATCTGTATGTTTCCAATGTCATTTTAACAGATGTGTATTTTCGCACCTTTTGTTTCACACACCTGCTGATTGTCACATGTTTTGCTCAGCCCTGTCTAGGTGGTAACTCGAAGACATTAATGTTTGTTAATGTTTCACCGGATCCTCCATCTGTGGGTGAATCCCTGTGTTCACTCCGATTTGCTGCACGGGTTAATGCTTGTGAGATTGGGATCCCAAGGCGTCAAACTAGCTTGCGTCCCATAGATTCTCGCCTAAGCATTGGCTAACATTTTAGCGGAACACTCGTTCTAGCTTTTAGAATTGTTTTGTCTGTAATTCTGTATGGCAGTTTGATATTTAACTGAGAAACTATATTACCTCTAACAACATCCACCTCCAATTTGTATAGTGGATAAAGTATTTTCTTTGTATCAGTAATAGCATATGGGGCTTTGTATTACTATACTTGTCATTTTTTATGAGGAGTTACCTGTGTGATAATTTACCTCTTCTTTTTT</genome_strand>
        <mrna_strand>AGCATGTGCC-TTTAGGAATTCAAAGCTCACATACCTTCTCCAG..............................................................................................................................................................................CCCTGTCTAGGTGGTAACTCGAAGACATTAATGTTTGTTAATGTTTCACCGGATCCTCCATCTGTGGGTGAATCCCTGTGTTCACTCCGATTTGCTGCACGGGTTAATGCTTGTGAGATTGGGATCCCAAGGCGTCAAACTAGCTTGCGTCCCATAGATTCTCGCCTAAGCATTGGCTAACATTTTAGCGGAACACTCGTTCTAGCTTTTAGAATTGTTTTGTCTGTAATTCTGTATGGCAGTTTGATATTTAACTGAGAAACTATATTACCTCTAACAACATCCACCTCCAATTTGTATAGTGGATAAAGTATTTTCTTTGTATCAGTAATAGCATATGGGGCTTTGTATTACTATACTTGTCATTTTTTATGAGGAGTTACC--TGTGATAATTTACCTCTTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371987" ref_strand="+" ref_description="SGN-E371987 [TUS-30-I8]">
      <seq>aaaattgcaagtattttctttgcaaaaactctattcccttggacaagaattgacttcaaatggcttctaatcttgtaaaatttcattcttcattccagttcaagctgaacacaacaagttccttaagttttttaggatcaaaacaacaacttaacaatctttatcactctattttcttcacaaaacccaagtcagatttttcacctcttcaatgttcactatcttctcctactccacctataactaaagaagatgccgtttctcaagcaaaattctctctgtcaactactttagagaaaccccttaacaatcccaaactcatagggaaaatcaagaaactcaaacaaccaagatttcgtgtcgaaattccagttgttgatgactccccatctgcattagcccaacttgcttttgacatttttggagaaatgcccatcaaaagaaaagccccaaacatcaagattctacttttatggcctaaccaaaccttaacccaagctgcacaagcagaatttgaaaagaagaaatcttcaaaccccatcattgaaaatttagatatttcatcaagaattgaaatttctgctgatgtggtagtgtttatggctccagaggcttcaatattgactgtaatgaaggagatttctgatacattgtacccaatgcctgtcgtgatttttaatcctaaatggggttttgatgaagagagtagttttggttgagttgagtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99283" stop="100612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99583" g_stop="100312" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E371987" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99583" e_stop="100312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGGACAAGAATTGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGG-TGAGTTGAGTGGATT</genome_strand>
        <mrna_strand>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGGACAAGAATTGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGGTTGAGTTGAGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369812" ref_strand="+" ref_description="SGN-E369812 [TUS-25-I7]">
      <seq>aaaattgcaagtattttctttgcaaaaactctattcccttggcacaagaagtatgacttcaaatggcttctaatcttgtaaaatttcattcttcattccagttcaagctgaacacaacaagttccttaagttttttaggatcaaaacaacaacttaacaatctttatcactctattttcttcacaaaacccaagtcagatttttcacctcttcaatgttcactattttctcctactacacctataactaaagaagatgccgttattcaagcaaaattctatctgacaactactttagagaaaccccttaacaatcccaaactcatagggaaaatcaagaaactcaaacaaccaagatttcgtgtcgaaattccagttgttgttgactcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99283" stop="100271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99583" g_stop="99971" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E369812" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99583" e_stop="99971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGG-ACAAGAA-T-TGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCA</genome_strand>
        <mrna_strand>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGGCACAAGAAGTATGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATTTTCTCCTACTACACCTATAACTAAAGAAGATGCCGTTATTCAAGCAAAATTCTATCTGACAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGTTGACTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285850" ref_strand="+" ref_description="SGN-E285850 [cLES-5-H2]">
      <seq>atcttgtaaaatttcattcttcattccagttcaagctgaacacaacaagttccttaagttttttaggatcaaaacaacaacttaacaatctttatcactctattttcttcacaaaacccaagtcagatttttcacctcttcaatgttcactatcttctcctactccacctataactaaagaagatgccgtttctcaagcaaaattctctctgtcaactactttagagaaaccccttaacaatcccaaactcatagggaaaatcaagaaactcaaacaaccaagatttcgtgtcgaaattccagttgttgatgactccccatctgcattagcccaacttgcttttgacatttttggagaaatgcccatcaaaagaaaagccccaaacatcaagattctacttttatggcctaaccaaaccttaacccaagctgcacaagcagaatttgaaaagaagaaatcttcaaaccccatcattgaaaatttagatatttcatcaagaattgaaatttctgctgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99352" stop="100471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99652" g_stop="100171" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E285850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99652" e_stop="100171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGT</genome_strand>
        <mrna_strand>ATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371986" ref_strand="+" ref_description="SGN-E371986 [TUS-30-I8](-)">
      <seq>atttgaaaagaagaaatcttcaaaccccatcattgaaaatttagatatttcatcaagaattgaaatttctgctgatgtggtagtgtttatggctccagaggcttcaatattgactgtaatgaaggagatttctgatacattgtacccaatgcctgtcgtgatttttaatcctaaatggggttttgatgaagagagtagttttggtgagttgagtggatttgtaggttcatttgaggttgtgtattcatttatgggattggaagttagagggatattgagtaatagaaaaggggtgatgtttaaatgtgttaaagatggtgttttgagtggtgagaaatggtatgtgttcgtcgaagaagatggagagttgaaagtggtttcaaggtttaaagcaaggccatcaattgttgaagttgagaatgttttgtataacttgatggccgtgaattcgccaatcacgaaatcagctaagttcttgaaagatttggtgtcaaatgttagggggaaaaagtaaagcacaagcaattcaaggtattacaactcacatcatttcaactttaggatagctatcctttgcaatgatattattgttttttcgagattttgttcttcctagaacagttacagtatgaagtccatgtactagctttgccaggttcaaaactttaacatggaagaacaaataataacctattggctgcatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99794" stop="101103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100094" g_stop="100808" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E371986" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100094" e_stop="100808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGGTGAGTTGAGTGGATTTGTAGGTTCATTTGAGGTTGTGTATTCATTTATGGGATTGGAAGTTAGAGGGATATTGAGTAATAGAAAAGGGGTGATGTTTAAATGTGTTAAAGATGGTGTTTTGAGTGGTGAGAAATGGTATGTGTTCGTCGAAGAAGATGGAGAGTTGAAAGTGGTTTCAAGGTTTAAAGCAAGGCCATCAATTGTTGAAGTTGAGAATGTTTTGTATAACTTGATGGCCGTGAATTCGCCAATCACGAAATCAGCTAAGTTCTTGAAAGATTTGGTGTCAAATGTTAGGGGGAAAAAGTAAAGCACAAGCAATTCAAGGTATTACAACTCACATCATTTCAACTTTAGGATAGCTATCCTTTGCAATGATATTATTGTTTTTTCGAGATTTTGTTCTTCCTAGAACAGTTACAGTATGAAGTCCATGTACTAGCTTTGCCAGGTTCAAAACTTTAACATGGAAGAACAAATAATAACCTATTGGCTGCATGAACTAAGCATC</genome_strand>
        <mrna_strand>ATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGGTGAGTTGAGTGGATTTGTAGGTTCATTTGAGGTTGTGTATTCATTTATGGGATTGGAAGTTAGAGGGATATTGAGTAATAGAAAAGGGGTGATGTTTAAATGTGTTAAAGATGGTGTTTTGAGTGGTGAGAAATGGTATGTGTTCGTCGAAGAAGATGGAGAGTTGAAAGTGGTTTCAAGGTTTAAAGCAAGGCCATCAATTGTTGAAGTTGAGAATGTTTTGTATAACTTGATGGCCGTGAATTCGCCAATCACGAAATCAGCTAAGTTCTTGAAAGATTTGGTGTCAAATGTTAGGGGGAAAAAGTAAAGCACAAGCAATTCAAGGTATTACAACTCACATCATTTCAACTTTAGGATAGCTATCCTTTGCAATGATATTATTGTTTTTTCGAGATTTTGTTCTTCCTAGAACAGTTACAGTATGAAGTCCATGTACTAGCTTTGCCAGGTTCAAAACTTTAACATGGAAGAACAAATAATAACCTATTGGCTGCATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539719" ref_strand="+" ref_description="SGN-E539719 [TUS-59-K1](-)">
      <seq>ctgcttttttttcatctccgggctgtatgacacagtatgcattgcgcatgtgttctgagctagattctattgcaacctttcctgctatgggctcaacttatgaggaagatcttgaaacaaaattagtggtagaggcaatccaaaagtggaatattttccagaaacaaaattacaaagaacgagttgataatgctgatatatatggtgaatttggatgttctgatagcagtaaagtatttcctgaaggaataaccaagggaaacagtctctcttcagagactagggacacatttattaaagaaaagataagatctgagctaggacatcatatatacatatccgaagcagaactccaaatgcataaacctcataatcaagtgtgggcaaaacctgaggtaagttttcgatcatttgtcatggataggattcacttggatgacgaaggtcgtggagaggctgaggttgaagtaataccaactcgtatggttgaggccaagtcaaaacgtttatttccagcattgaacttcaccatggcagaggaaccgagaaggataatgttggaacgacatgccaaacgagtagtgcctttgtaaatggtagtgacaacactagcctatattatgtaaatgatataagaagctccatggagactacacaatctaagtgtgtaaatactaacctagatattacagaaactgtcactcatttagaagatgaagcaggttagttgtttatttgaatttgaaggcaacgaaatgaattgcaactttaattttttttgcttttgttagttgttatctattttgttctgaattcagtaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="102888" stop="101371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102588" g_stop="102193" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102192" i_stop="102102" i_length="91">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102101" g_stop="101676" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="820" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="821" polyA_stop="832"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E539719" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102588" e_stop="102193"/>
          <exon e_start="102101" e_stop="101676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAGGTACTTTAACCTTTGTACTTTAATTCAGCAGATTCACTTCCATCCTTTTTGTGTAATTGCTTAAATCTCCATAGTCTTATTTAATATGCAGGTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAGTTGTTTATTTGAATTTGAAGGCAACGAAATGAATTGCAACTTTAATTTTTTTTTGCTTTTGTTAGTTGTTATCTATTTTGTTCTGAATTCAGTA</genome_strand>
        <mrna_strand>CTGCTT-TTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAG...........................................................................................GTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAGTTGTTTATTTGAATTTGAAGGCAACGAAATGAATTGCAACTTTAA-TTTTTTTTGCTTTTGTTAGTTGTTATCTATTTTGTTCTGAATTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539721" ref_strand="+" ref_description="SGN-E539721 [TUS-59-K1]">
      <seq>ctagacaatatgcagattcaggccttctaaaagcaaatcattgcctgcttgttttttcatctccgggctgtatgacacagtatgcattgcgcatgtgttctgagctagattctattgcaacctttcctgctatgggctcaacttatgaggaagatcttgaaacaaaattagtggtagaggcaatccaaaagtggaatattttccagaaacaaaattacaaagaacgagttgataatgctgatatatatggtgaatttggatgttctgatagcagtaaagtatttcctgaaggaataaccaagggaaacagtctctcttcagagactagggacacatttattaaagaaaagataagatctgagctaggacatcatatatacatatccgaagcagaactccaaatgcataaacctcataatcaagtgtgggcaaaacctgaggtaagttttcgatcatttgtcatggataggattcacttggatgacgaaggtcgtggagaggctgaggttgaagtaataccaactcgtatggttgaggccaagtcaaaacgtttatttccagcattgaacttcaccatggcagaggaaccgagaaggataatgttggaacgacatgccaaacgagtagtgcctttgtaaatggtagtgacaacactagcctatattatgtaaatgatataagaagctccatggagactacacaatctaagtgtgtaaatactaacctagatattacagaaactgtcactcatttagaagatgaagcaggttagtttgttattttgaatttgaaaggcacgaaatgaattttgcactttatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="102932" stop="101435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102632" g_stop="102193" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102192" i_stop="102102" i_length="91">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102101" g_stop="101720" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="824" r_length="384" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E539721" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102632" e_stop="102193"/>
          <exon e_start="102101" e_stop="101720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAGGTACTTTAACCTTTGTACTTTAATTCAGCAGATTCACTTCCATCCTTTTTGTGTAATTGCTTAAATCTCCATAGTCTTATTTAATATGCAGGTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAG-TTGTTTATTTGAATTTGAAGGCAACGAAATGAA-TTGCAACTTTAATTTTT</genome_strand>
        <mrna_strand>CTAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAG...........................................................................................GTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAGTTTGTTATTTTGAATTTGAAAGGCACGAAATGAATTTTGCACTTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281900" ref_strand="+" ref_description="SGN-E281900 [cLES-2-L13]">
      <seq>tagacaatatgcagattcaggccttctaaaagcaaatcattgcctgcttgttttttcatctccgggctgtatgacacagtatgcattgcgcatgtgttctgagctagattctattgcaacctttcctgctatgggctcaacttatgaggaagatcttgaaacaaaattagtggtagaggcaatccaaaagtggaatattttccagaaacaaaattacaaagaacgagttgataatgctgatatatatggtgaatttggatgttctgatagcagtaaagtatttcctgaaggaataaccaagggaaacagtctctcttcagagactagggacacatttattaaagaaaagataagatctgagctaggacatcatatatacatatccgaagcagaactccaaatgcataaacctcataatcaagtgtgggcaaaacctgaggtaagttttcgatcatttgtcatggataggattcacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="102931" stop="101760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102631" g_stop="102193" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102192" i_stop="102102" i_length="91">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102101" g_stop="102060" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="481" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E281900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102631" e_stop="102193"/>
          <exon e_start="102101" e_stop="102060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAGGTACTTTAACCTTTGTACTTTAATTCAGCAGATTCACTTCCATCCTTTTTGTGTAATTGCTTAAATCTCCATAGTCTTATTTAATATGCAGGTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGAT</genome_strand>
        <mrna_strand>TAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAG...........................................................................................GTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544971" ref_strand="+" ref_description="SGN-E544971 [TUS-67-J7]">
      <seq>aatattaatgtcatcgttctccaattgctgaaaaccccaaaacatgtctgaccatacatgttgttatcgttgcaccaaattcatattaactgcaggcttaacagctctctttatctggctaagtctaagaacctcaaaaccatcatgctctttacataatttttacttacctgcccttaacatatctgatcattcgaacaccacaagatccaatcatactctgtattttcagctcaatttgaacaacaagatgaaggacaaaggtgttcgttacgacgagattatattaagcttcttctactatggtacaaatacaagtatcccaattggtaatagcacaataaatggattttaccaaggccatgacaagaaagcaaagaaaaaagggaaactggaaattcagaaaatggcttgggatgctgcttttaagaatgttacaaatacatcaaaagtgatttttagggtggatttggctacaagaataagctacaagactattttttggtttagcaagaaacataattttactgtggaaaatagaacaatggaagtggatagtacaggtaaatcaagtgcacaacacattcattgctattttatggttttaggttttcctctaattgttttggttagcttgatttctttgttgtaataaatgactggcactattcaactcaatattttcttccttttggtttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108904" stop="107604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108604" g_stop="107905" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="700" polyA_stop="709"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E544971" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108604" e_stop="107905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTC</genome_strand>
        <mrna_strand>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTTCTTTGTTGT-AATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549130" ref_strand="+" ref_description="SGN-E549130 [TUS-67-J7](-)">
      <seq>aatattaatgtcatcgttctccaattgctgaaaaccccaaaacatgtctgaccatacatgttgttatcgttgcaccaaattcatattaactgcaggctaaacagctctctttatctggctaagtctaagaacctcaaaaccatcatgctctttacataatttttacttacctgcccttaacatatctgatcattcgaacaccacaagatccaatcatactctgtattttcagctcaatttgaacaacaagatgaaggacaaaggtgttcgttacgacgagattatattaagcttcttctactatggtacaaatacaagtatcccaattggtaatagcacaataaatggattttaccaaggccatgacaagaaagcaaagaaaaaagggaaactggaaattcagaaaatggcttgggatgctgcttttaagaatgttacaaatacatcaaaagtgatttttagggtggatttggctacaagaataagctacaagactattttttggtttagcaagaaacataattttactgtggaaaatagaacaatggaagtggatagtacaggtaaatcaagtgcacaacacattcattgctattttatggttttaggttttcctctaattgttttggttagcttgattcttttgttgtaaataaatgactggcactattcaactcaatattttcttccttttggtttaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108904" stop="107604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108604" g_stop="107905" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="713"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E549130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108604" e_stop="107905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTC</genome_strand>
        <mrna_strand>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTAAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309000" ref_strand="+" ref_description="SGN-E309000 [cLEY-23-D4]">
      <seq>atattaatgtcatcgctctccaattgctgaaaaccccaaaacatgtctgaccatacatgttgttatcgttgcaccaaattcatattaactgcaggcttaacagctctctttatctggctaagtctaagaacctcaaaaccatcatgctctttacataatttttacttacctgcccttaacatatctgatcattcgaacaccacaagatccaatcatactctgtattttcagctcaatttgaacaacaagatgaaggacaaaggtgttcgttacgacgagattatattaagcttcttctactatggtacaaatacaagtatcccaattggtaatagcacaataaatggattttaccaaggccatgacaagaaagcaaagaaaaaagggaaactggaaattcagaaaatggcttgggatgctgcttttaagaatgttacaaatacatcaaaagtgatttttagggtggatttggctacaagaataagctacaagactattttttggtttagcaagaaacataattttactgtggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108903" stop="107768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108603" g_stop="108068" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E309000" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108603" e_stop="108068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAA</genome_strand>
        <mrna_strand>ATATTAATGTCATCGCTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539753" ref_strand="+" ref_description="SGN-E539753 [TUS-59-K21](-)">
      <seq>gagacattaggtggaggaaattacgtgtcgcttttcggatgctcatggttatgttccgtcgagaattttctttctctgattcgttatatctttgggagatgatgtggtctctggaatatgatcctgagttattttccatgtatgaagaagaccctgacttgactgctgaaaattctagacgagcaaaagttaagtcgatacgtcagtatgggaaatatgagagagaaaacatgagaagtggaggtaaagatacagaagctcccctcccaatttctgttttcctagtagccagcgtcctgaaggacaagagtgcgaagctaacagaagctagaggactggacgaagttgttaagatcctgaataatattactggacacttggatgccagaaaggcttgcagtagcgctatgaagcttcacaagaagtatcttaagaaggcagccaacactaataggtagtcgagcagaggcgagtactatgtaatattctcactgaacttaacgacaacatcttctcgttgctggccaagaaggtatgacaagaatctatatttatatattttgggctggtcgatgaacattagctgcttttgctattgtagttatgttatgatgtgctaagacgtaattgttgtattcaatccaaatgtaatgtacaaggacacacttccaaagtttgtactataatctcaggaacaaaacaatgttccatatttgtaagggatagcttcaaatatattataataaatatactcatgtttttatagcaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="110582" stop="3964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110282" g_stop="110184" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110183" i_stop="110070" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110069" g_stop="109815" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="353" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109632" g_stop="109549" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="437" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109449" g_stop="109109" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="777" r_length="340" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109108" i_stop="108678" i_length="431">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108677" g_stop="108648" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="807" r_length="30" r_score="0.633"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E539753" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110282" e_stop="110184"/>
          <exon e_start="110069" e_stop="109815"/>
          <exon e_start="109632" e_stop="109549"/>
          <exon e_start="109449" e_stop="109109"/>
          <exon e_start="108677" e_stop="108648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACATTAGGTGGAGGAAATTACGTGTTTGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAGGTAAGACTCATCTCCTGATATTTTTTCCTGATCTGAAGCTGTCATTTAAGATGGCTTTGCAATTGGACGCGTGTGAAGCCACTAGCAAATTCTAAATCTTTTGTTTGCCAACAGATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAGGTTGGTTTGACAATTACATAATTAGGTGCTATGTCTTCGTTACTTCTGTTTTCTCCTTTTAAATCCTGCTTTGATATGTTTTTACTTGAGTTGATGGTCTTTTAGAAACAACCTCTCTATTAGGATAACGTCTGTGTACACTCTACCTTCTCCAGACATCATCTTTTGCTTATTATTTTCAGATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAGGTAACCTTTCCTATTGACGGATAAATGAAAACGTGTGTTAGCAAGATTACATTTCAAAAGACGGATTTCATTTATAAGTTCATCTACTGGTTAAAACAGGCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGACATTATAAATAGTCTAAAGTTATAGAAAGTACATATTGACGACTATATATTATGATAGACTAAAAAAAACAAAAGCAAATACAACTTATCTATTTATATTATTATGATACACTCAAAAAGTTAGAATATAACTTAACTTAAACACTGATTATTTAATTTCGATCGATTCAGAATCTCCTCTAAACCATCTCAAATTTTTAGATATAAAATCTTCAATATTTCGAATCTTTTGGTAAACATGGCAAAATTAATTTTCTTTGAAACTAATCCCTCTAATATAATGTCACAATGAGAGTAATAATAATAATAATATAAAAGAATTAAACCCCACTTCTCCTACCCCATTATTGGCTGACCCCTTGCCATTGACCTCAAAGACTTGAAGGTTTTCAATTGGGTGAGGAGGTGCTCTCACATACTCATTTATAAAAGCACTTTTGCCAAAAAGCAAAAAAAAATGGATTTTTCCCAG</genome_strand>
        <mrna_strand>GAGACATTAGGTGGAGGAAATTACGTG-TCGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAG..................................................................................................................ATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG......................................................................................................................................................................................ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG...................................................................................................GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAG-CAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542674" ref_strand="+" ref_description="SGN-E542674 [TUS-64-B14](-)">
      <seq>tcagtatgggaaatatgagagagaaaacatgagaagtggaggtaaagatacagaagctcccctcccaatttctgttttcctagtagccagcgtcctgaaggacaagagtgcgaagctaacagaagctagaggactggacgaagttgttaagatcctgaataatattactggacacttggatgccagaaaggcttgcagtagcgctatgaagcttcacaagaagtatcttaagaaggcagccaacactaataggtagtcgagcagaggcgagtactatgtaatattctcactgaacttaacgacaacatcttctcgttgctggccaagaaggtatgacaagaatctatatttatatattttgggctggtcgatgaacattagctgcttttgctattgtagttatgttatgatgtgctaagacgtaattgttgtattcaatccaaatgtaatgtacaaggacacacttccnaaagtttgtactataatctcaggaacaanaacaatgttccatatttgtaagggatagcttcaacatatattataataaatatactcatgtttttatagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="110265" stop="108811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109965" g_stop="109815" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109632" g_stop="109549" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="235" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109449" g_stop="109111" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="577" r_length="342" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E542674" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109965" e_stop="109815"/>
          <exon e_start="109632" e_stop="109549"/>
          <exon e_start="109449" e_stop="109111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAGGTTGGTTTGACAATTACATAATTAGGTGCTATGTCTTCGTTACTTCTGTTTTCTCCTTTTAAATCCTGCTTTGATATGTTTTTACTTGAGTTGATGGTCTTTTAGAAACAACCTCTCTATTAGGATAACGTCTGTGTACACTCTACCTTCTCCAGACATCATCTTTTGCTTATTATTTTCAGATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAGGTAACCTTTCCTATTGACGGATAAATGAAAACGTGTGTTAGCAAGATTACATTTCAAAAGACGGATTTCATTTATAAGTTCATCTACTGGTTAAAACAGGCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCC-AAAGTTTGTACTATAATCTCAGGAACAA-AACAATGTTCCATATTTGTAAGGGATAGCTTCAA-ATATATTATAATAAATATACTCATGTTTTTATAGACATTATAAA</genome_strand>
        <mrna_strand>TCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG......................................................................................................................................................................................ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG...................................................................................................GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCNAAAGTTTGTACTATAATCTCAGGAACAANAACAATGTTCCATATTTGTAAGGGATAGCTTCAACATATATTATAATAAATATACTCATGTTTTTATAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253615" ref_strand="-" ref_description="SGN-E253615 [cLEG-32-M13]">
      <seq>tatgaagaagaccctgacttgactgctgaaaattctagacgagcaaaagttaagtcgatacgtcagtatgggaaatatgagagagaaaacatgagaagtggaggtaaagatacagaagctcccctcccaatttctgttttcctagtagccagcgtcctgaaggacaagagtgcgaagctaacagaagctagaggactggacgaagttgttaagatcctgaataatattactggacacttggatgccagaaaggcttgcagtagcgctatgaagcttcacaagaagtatcttaagaaggcagccaacactaataggtagtcgagcagaggcgagtactatgtaatattctcactgaacttaacgacaacatcttctcgttgctggccaagaaggtatgacaagaatctatatttatatattttgggctggtcgatgaacattagctgcttttgctattgtagttatgttatgatgtgctaagacgtaattgttgtattcaatccaaatgtaatgtacaaggacacacttccaaagtttgtactataatctcaggaacaaaacaatgttccatatttgtaagggatagcttcaaatatattataataaatatactcatgtttttatagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="110327" stop="108818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110027" g_stop="109815" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109632" g_stop="109549" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="297" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109449" g_stop="109117" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="630" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E253615" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253615" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110027" e_stop="109815"/>
          <exon e_start="109632" e_stop="109549"/>
          <exon e_start="109449" e_stop="109117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAGGTTGGTTTGACAATTACATAATTAGGTGCTATGTCTTCGTTACTTCTGTTTTCTCCTTTTAAATCCTGCTTTGATATGTTTTTACTTGAGTTGATGGTCTTTTAGAAACAACCTCTCTATTAGGATAACGTCTGTGTACACTCTACCTTCTCCAGACATCATCTTTTGCTTATTATTTTCAGATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAGGTAACCTTTCCTATTGACGGATAAATGAAAACGTGTGTTAGCAAGATTACATTTCAAAAGACGGATTTCATTTATAAGTTCATCTACTGGTTAAAACAGGCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGACAT</genome_strand>
        <mrna_strand>TATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG......................................................................................................................................................................................ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG...................................................................................................GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542681" ref_strand="+" ref_description="SGN-E542681 [TUS-64-B18](-)">
      <seq>aggacaagagtgagaagctaacagaagctagaggactggacgaagttgttaagatcctgaataatattactggacacttggatgccagaaaggcttgcagtagcgttatgaagcttcacaagaagtattcttaagaaggcagccaacactaataggtagtcgagcagaggcgagtactatgtaatattctcactgaacttaacgacaacatcttctcgttgctggccaagaaggtatgacaagaatctatatttatatattttgggctggtcgatgaacattagctgcttttgctattgtagttatgttatgatgtgctaagacgtaattgttgtattcaatccaaatgtaatgtacaaggacacacttccaaagtttgtactataatctcaggaacaaaacaatgttccatatttgtaagggatagcttcaaatatattataataaatatactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="110167" stop="108832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109867" g_stop="109815" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109632" g_stop="109549" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="138" r_length="85" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109449" g_stop="109132" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="456" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E542681" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109867" e_stop="109815"/>
          <exon e_start="109632" e_stop="109549"/>
          <exon e_start="109449" e_stop="109132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAGGTTGGTTTGACAATTACATAATTAGGTGCTATGTCTTCGTTACTTCTGTTTTCTCCTTTTAAATCCTGCTTTGATATGTTTTTACTTGAGTTGATGGTCTTTTAGAAACAACCTCTCTATTAGGATAACGTCTGTGTACACTCTACCTTCTCCAGACATCATCTTTTGCTTATTATTTTCAGATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTA-TCTTAAGAAGGTAACCTTTCCTATTGACGGATAAATGAAAACGTGTGTTAGCAAGATTACATTTCAAAAGACGGATTTCATTTATAAGTTCATCTACTGGTTAAAACAGGCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCA</genome_strand>
        <mrna_strand>AGGACAAGAGTGAGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG......................................................................................................................................................................................ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGTTATGAAGCTTCACAAGAAGTATTCTTAAGAAG...................................................................................................GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704346" ref_strand="+" ref_description="SGN-E704346 [FA24AB08]">
      <seq>ctttgttctcccatgattattctacttgatgatgaagcagatgcattttggtgctttgaacgtatgatgaagagactgagaaaaaatttcagagctactgggaactctgttggagtggaggcgcagctaagtaatctagcatcaataactcaagttatcgatcccaaacttcaccagcacttagagacattaggtggaggaaattacgtgtttgcttttcggatgctcatggttatgttccgtcgagaattttctttctctgattcgttatatctttgggagatgatgtggtctctggaatatgatcctgagttattttccatgtatgaagaagaccctgacttgactgctgaaaattctagacgagcaaaagttaagtcgatacgtcagtatgggaaatatgagagagagaacatgagaagtggaggtaaagatacagaagctcccctcccaatttctgttttcctagtagccagcgtcctgaaggacaagagtgcgaagctaacagaagctagaggactggacgaagttgttaagatcctgaataatattactggacacttggatgccagaaaggcttgcagtagcgctatgaagcttcacaagaagtatcttaagaaggcagccaacactactaggtagtcgagcagaggcgagtactatgtaatattctcacttgaacttaacgacaacatcttctcgttgctggccaagaaggtatgacaagaatctatattcatatattttgggctggtcgatgaacattaactgtttttgctactgtagttatgttatgatgtgctaagacgtaaatgttgtattcaatcccaatgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="111097" stop="108934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110797" g_stop="110720" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110719" i_stop="110503" i_length="217">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110502" g_stop="110397" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="184" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110396" i_stop="110282" i_length="115">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110281" g_stop="110184" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="282" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110183" i_stop="110070" i_length="114">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110069" g_stop="109815" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="537" r_length="255" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109632" g_stop="109549" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="621" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109449" g_stop="109234" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="838" r_length="217" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E704346" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110797" e_stop="110720"/>
          <exon e_start="110502" e_stop="110397"/>
          <exon e_start="110281" e_stop="110184"/>
          <exon e_start="110069" e_stop="109815"/>
          <exon e_start="109632" e_stop="109549"/>
          <exon e_start="109449" e_stop="109234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTGGTACATAACTTTACTCGGACTGCCTGTTTATAGTTGTGTAAATTGTAATTATCATGAATACCCGCATCATTTCATAACAGAATTTGTTTGGTTACCTCAAGTTGAATTCCAGTAACACTAATTTGTGTTCATCGATCCTTTCTATATCTAGCCTTGCAATTCCTTAGATTTTTGTAACTACTGTGGCTAATACGAAATGTTCTGTGCATTTTTAAAGAGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTTATCTAGCATCAATAACTCAAGTTATCGATCCCAAACTTCACCAGCACTTAGGTACCACCTCTCTACTTTTTATAAATGCATCCCAGAAGTAGTCAGTGATTCTCTCATTTTATGCTTCGAATCTAGTGAAAAATATCATTGAATTTCCTTGTGATCTTGGCAACAGAGACATTAGGTGGAGGAAATTACGTGTTTGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAGGTAAGACTCATCTCCTGATATTTTTTCCTGATCTGAAGCTGTCATTTAAGATGGCTTTGCAATTGGACGCGTGTGAAGCCACTAGCAAATTCTAAATCTTTTGTTTGCCAACAGATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAGGTTGGTTTGACAATTACATAATTAGGTGCTATGTCTTCGTTACTTCTGTTTTCTCCTTTTAAATCCTGCTTTGATATGTTTTTACTTGAGTTGATGGTCTTTTAGAAACAACCTCTCTATTAGGATAACGTCTGTGTACACTCTACCTTCTCCAGACATCATCTTTTGCTTATTATTTTCAGATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAGGTAACCTTTCCTATTGACGGATAAATGAAAACGTGTGTTAGCAAGATTACATTTCAAAAGACGGATTTCATTTATAAGTTCATCTACTGGTTAAAACAGGCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCAC-TGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATG</genome_strand>
        <mrna_strand>CTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTG.........................................................................................................................................................................................................................AGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTAATCTAGCATCAATAACTCAAGTTATCGATCCCAAACTTCACCAGCACTTAG...................................................................................................................AGACATTAGGTGGAGGAAATTACGTGTTTGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAG..................................................................................................................ATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAGAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG......................................................................................................................................................................................ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG...................................................................................................GCAGCCAACACTACTAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTCATATATTTTGGGCTGGTCGATGAACATTAACTGTTTTTGCTACTGTAGTTATGTTATGATGTGCTAAGACGTAAATGTTGTATTCAATCCCAATGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338265" ref_strand="+" ref_description="SGN-E338265 [cTOE-13-G6]">
      <seq>tgattcgtactgaccggacacttgacttttatgagaaacaagagaatctatcaaagctttgggatattttggctgtgtatgcttggttcgacaaacaagttagttattgtcaaggaatgagtgatctttgatctcccatgattattctacttgatgatgaagcagatgcattttggtgctttgaacgtatgatgaagagactgagaaaaaatttcacagctactgggaactctgttggagtggaggcgcagctaacttatctagcatcaataactcaagttatcgatcccaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="111675" stop="110111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111375" g_stop="111262" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111261" i_stop="110809" i_length="453">
            <donor d_prob="0.949" d_score="0.94"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110808" g_stop="110720" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="203" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110719" i_stop="110503" i_length="217">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110502" g_stop="110411" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="295" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E338265" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111375" e_stop="111262"/>
          <exon e_start="110808" e_stop="110720"/>
          <exon e_start="110502" e_stop="110411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGTACTGACCGGACACTTGTCTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTTTATGCTTGGTTTGACAAAGAAGTTAGTTATTGTCAAGGTGAGTTATTGTAGTATCTTCTTAAGATAATTCTTCCAGTATTTTGGCTTCTGAAGTAGACTAAGAACTCATGTTTGTGATACTAGTTTGAATGTTGTAGTTTCTACTTATATCTCGTCTTTGACTTAATACCATGCACTATGCTAAAGTTGACGATAAGTTCTAATTGCTCAAGTTTGTGTACACTCAAAATTTCTACGCTAAATGTTCAATTCATAAATTATTCTTGTAAGGGAAGATATCCATTTATTACCAATTGTCCTTTTGTGTCTTTTCTCACGCCGGCGTTAATATTTTTGTCAATGTCAGGATTAACTTTATTTCCATGGGGAAATAATCCCTTTTATTTCCCTTCCTATCCAGTATTTCCTTATACATGATCGCAAGTTTATCTCTTATTTATTGCTTCTAGTTTGTGCTGAAACTATTTTAACATTTGACTATGACGAACAGGAATGAGTGATCTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTGGTACATAACTTTACTCGGACTGCCTGTTTATAGTTGTGTAAATTGTAATTATCATGAATACCCGCATCATTTCATAACAGAATTTGTTTGGTTACCTCAAGTTGAATTCCAGTAACACTAATTTGTGTTCATCGATCCTTTCTATATCTAGCCTTGCAATTCCTTAGATTTTTGTAACTACTGTGGCTAATACGAAATGTTCTGTGCATTTTTAAAGAGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTTATCTAGCATCAATAACTCAAGTTATCGATCCCAAACT</genome_strand>
        <mrna_strand>TGATTCGTACTGACCGGACACTTGACTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTGTATGCTTGGTTCGACAAACAAGTTAGTTATTGTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGTGATCTTTGATCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTG.........................................................................................................................................................................................................................AGAAAAAATTTCACAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAACTTATCTAGCATCAATAACTCAAGTTATCGATCCCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707673" ref_strand="+" ref_description="SGN-E707673 [FA33CF09]">
      <seq>caatgatttttgaggagtttccaaagtaacaaagtttgaagcatgtggaggaactatggagcttctgctgattcattttatcaggtccgtcctgaatgtgctgatgatgttcctgaaaccaagtttagaatcaaggttgggaaaactttaagttcaagaagatggcatgctgcatttacccccgaaggttatcttgatataggcaaaatacttggtcgagtttgtcgtgggggaattcatccatcaattagaggtgaagtttgggagttcttactcggctgttatgattcaaagagcacatttgaggaacgagagcaattacgacaacgtcggagggtacagtatgctgcattgaaagaagaatgtcgtgggatgtttcccttaattggaagtggtcggtttatttctgcacctgtaatcactgaagatggtgaccctattctagatcctatagttcttcaagagttaaatgcggcaaaagaaccaacttcagctggtcaagttggtccatctgatggttttgaattggtgaaggagcatgacaaaaaagtaatccagtggaaactctcattacaccagataggattggatgtgattcgtactgaccggacccttgtcttttatgagaaacaagagaatctatcaaagctttgggatattttggctgtttatgcttggtttgacaaagaagttagttattgtcaaggaatgagtgatctttgttctcccatgattattctacttgatgatgaagcagatgcattttggtgctttgaacgtatgatgaagagactgagaaaaaatttcagagctactgggaactctgttggagtggaggcgcagctaagtaatctagcatcaataactcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115051" stop="110127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114831" g_stop="114827" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114826" i_stop="114751" i_length="76">
            <donor d_prob="0.882" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114750" g_stop="114672" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="84" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114595" g_stop="114545" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="135" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112755" g_stop="112660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="231" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112431" g_stop="112328" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="335" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111969" g_stop="111800" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="505" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="111799" i_stop="111681" i_length="119">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="111680" g_stop="111603" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="583" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="111602" i_stop="111385" i_length="218">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111384" g_stop="111262" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="706" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111261" i_stop="110809" i_length="453">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="110808" g_stop="110720" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="795" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="110719" i_stop="110503" i_length="217">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="110502" g_stop="110427" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="871" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E707673" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114831" e_stop="114827"/>
          <exon e_start="114750" e_stop="114672"/>
          <exon e_start="114595" e_stop="114545"/>
          <exon e_start="112755" e_stop="112660"/>
          <exon e_start="112431" e_stop="112328"/>
          <exon e_start="111969" e_stop="111800"/>
          <exon e_start="111680" e_stop="111603"/>
          <exon e_start="111384" e_stop="111262"/>
          <exon e_start="110808" e_stop="110720"/>
          <exon e_start="110502" e_stop="110427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGTATGTTGTAGGTGGGTCCCCTGTTGTGTTCTTGTTGTTGAAATTCTTGATCAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAGGTATTATACTGCAGAATATTTGTGCAGTATATTTATATATTTGTTTTTATTTTTCTAACTGTATATTTATTGATAGGTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAGGTAATTGGTATTTTTCTAGACACATACTATTAGTTAGATGAGTACAACTAATTTAAATGTTTGTTGTAATTTTAGTAGATTTTTGTATTTAAGTTTATGTTGTCTTGATCTGTTATGGTAAAGGCTTGAATTTTATTTATGATTTTGAGATTATAAGAGATGCAAATGTTTGGAACAATCATTTTGATTGATACCATTTACATTTTTAAGTTATAAATAAATGAATTCTGTCTTTATGAATCCATTTTTGTCAACATACAACAACATCAAAGCCTCAATCACAACTGATTTTGGGGCTATATAAATCCTATATCCATTTTTGCTCCATCTGAAGTTGTTCCATTCCAATATATAATTTGAGTTTTCTCTACATATTTTACTTACATTCTAATCTCTGCCGGGATTAAAAGGACTCTTAGCTAGTATTGCAGCTCATATAAACTCACCGACATGTCCAAACCTTAATTCCTAAGATTATATGGAAGGCAGTTGAGTTTTGATGTTTGTATTCCAGAAGCTGCTCCCTGCTAGTCAAATCTCCTATCCATCGGTTCCTATAATCTTTTTAAAGAATATTTGGGTCTTCTTGATTATTTGATCGAGATGACTCTTCCCTAGTTAGTAGCAGGTGAGGAACATTTCACGAATTGCTGACATAATCTCTAGAAAAGATCATTAATTTGTCAATTATTTTGGTTGTACTATTATAGGTGTGAATTAACAACAACAACTACTATTACAAGTCTACGACTCAAAACCAAGCAAGTTGGAGTCGGCTATACGTATCATCACTGTCCATGTTGCTTCATTTAAGCTCATCTTAGCTAGTCTATGGTGAATAATCCTAACAATACTGAAAACAGGTGGCGGGAACTAGTCTAGAATTTCTCCCGTTACAACACTTGCTGTTTTTTTCCTCTACTTAAATGGTGTAGACTGATTTCATGATTGTTCATAAGTCTAAACTTGAGCATTTTGGGCGATCTGAAATTTACCTATCAGGGGCAAGGATAAAGCCTTTGCCCCCCTTCCCAAAATCCTGTGTAAACATGGAATAATGAGGATACAAAAATATTATGAAGGGGATGACAAGAAATATAATAACAGAATAAAAGAAGAATTTGTTACCATTTTAACTACTATTATTTTTAGTTGTATGAAAAGAAATTGTCTTTTCTGTTTACCACCAGAACAAACTGATATTAATTCATAAAATGAGGGTCTGATAATACATCAATTTTTTATAAGATTAGCTAAAAATTGTATTGATATTTTATTACTATAATTGTTGGATATGTTCTACAACATTGAATAAGATTATAAATGATCATAGATAGAGTCGCAAGTAATGTGAAGATAAAGGACAAAATTAGAGAAGGTCACCTGAGATGGTTTGATCATGTCCCATATAGACTTCAAATTGTATTGATGTATAGGTGCGACACTGATCTTAGTTGTTGTTACAACAACTAAGACTCCCAAATATCTAACCATCTTAGCTGTTGTTACACTTACATAAGGTTTGGCATTAGGAATGAATTTTGTTAAAAACTTGTGTGTCAATGTAAAGATAATTGTGAGATTTGAAAGAACCTCTAGTTTTAGATAACTCATGATTTACTCTGTAATGAATGAACTCGGTAGACTGTGAAGGAAGGGCATTCATATAATGACCTCAACTTGGTTTGGAATTGATGTGTAATTAATTGATGGCTTGAATTGAATCCTTGTCACCCTTCATTTCTAATGTTTTGCCTCATATTTATTATCTAATAATCTACTTATTCAGGTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGGGTAAGGTTAGCTTCATGATTTGTAAGTTACTTTCGGTTTATGTGCCAATATGATTCAGGAATATTGCAATTCTGCATTTTTATCATTTTTACTGTTTGTTTGATGTTTTTTCTGTGTGGGACTAATTAAAAGAACTTGTGACATAATCCTAGTCTTTATAAGTATTTCATGTAAGTTCATGCATCAGCGTAACAGAATGTTTAGTATTCGAGTATTTGTGGCTTTTAGGGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAGGTATTTTACTTTCCTTACTAAGCAAATATAAATATATCCAGGCAACAATTAATTTTTTTCAAACTGTATGCTTCATCATCCTAAATTAGTTACTCGAGTAGAATTACAATAGAAGTTGTTGTTGGAGGTGACTCCAACATGTTTGTTTTCAGCTGCTTGCATGAAATTTTTATGCTCAGTGGTTTCCATAGCTTCATATCTGAAGATTTACCTTTTGCGAATTTTGTATCTGTGGTTCGGCAATAGACAAATACATTCTCATGTGAAATTTGATAATACTTTGCCATTCGACAGTATATATCAATACCTGATCCATATCAAAATCACATTCTCAACGCACATTTCTTGTATGCATCAGGGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAGTTGGTAAATACTTAATATGTTCCCCAAGTAGTGTGATTTCTCTTTCTCTTCCTTTCTGATGGAAGGGCTCTTGGATGCTGTATAAAGTGACGATCGTTTTTTTGGACATCGTGCAATTACAGGTCCATCTGATGGTTTTGAATTGGTGAAGGAGCATGACAAAAAAGTAATCCAGTGGAAACTCTCATTACACCAGATAGGTCGGTTATGTATACAGATTGCATGCACTTGTTTCTTATCATGCCAATCTATGTTTTTAATTCATCTGTTCTCCGGTTTTGGCAAGTCGAGTATTGGCTTGGGATGTACTATGGATTTTTCTTATAAATTTGGCAATCACTTCCTTCTTCTTTATTATCAAATTTAATTTCTTTATCTGTATGTTACATCTTTCCATCCTTGTTCATATTTATGCTAGGATTGGATGTGATTCGTACTGACCGGACACTTGTCTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTTTATGCTTGGTTTGACAAAGAAGTTAGTTATTGTCAAGGTGAGTTATTGTAGTATCTTCTTAAGATAATTCTTCCAGTATTTTGGCTTCTGAAGTAGACTAAGAACTCATGTTTGTGATACTAGTTTGAATGTTGTAGTTTCTACTTATATCTCGTCTTTGACTTAATACCATGCACTATGCTAAAGTTGACGATAAGTTCTAATTGCTCAAGTTTGTGTACACTCAAAATTTCTACGCTAAATGTTCAATTCATAAATTATTCTTGTAAGGGAAGATATCCATTTATTACCAATTGTCCTTTTGTGTCTTTTCTCACGCCGGCGTTAATATTTTTGTCAATGTCAGGATTAACTTTATTTCCATGGGGAAATAATCCCTTTTATTTCCCTTCCTATCCAGTATTTCCTTATACATGATCGCAAGTTTATCTCTTATTTATTGCTTCTAGTTTGTGCTGAAACTATTTTAACATTTGACTATGACGAACAGGAATGAGTGATCTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTGGTACATAACTTTACTCGGACTGCCTGTTTATAGTTGTGTAAATTGTAATTATCATGAATACCCGCATCATTTCATAACAGAATTTGTTTGGTTACCTCAAGTTGAATTCCAGTAACACTAATTTGTGTTCATCGATCCTTTCTATATCTAGCCTTGCAATTCCTTAGATTTTTGTAACTACTGTGGCTAATACGAAATGTTCTGTGCATTTTTAAAGAGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTTATCTAGCATCAATAACTCAAG</genome_strand>
        <mrna_strand>CAATG............................................................................ATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG............................................................................GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG....................................................................................................................................................................................................................................GGAATTCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTCGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................GGTACAGTATGCTGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTAAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAGTTG.......................................................................................................................GTCCATCTGATGGTTTTGAATTGGTGAAGGAGCATGACAAAAAAGTAATCCAGTGGAAACTCTCATTACACCAGATAG..........................................................................................................................................................................................................................GATTGGATGTGATTCGTACTGACCGGACCCTTGTCTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTTTATGCTTGGTTTGACAAAGAAGTTAGTTATTGTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGTGATCTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTG.........................................................................................................................................................................................................................AGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTAATCTAGCATCAATAACTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542682" ref_strand="+" ref_description="SGN-E542682 [TUS-64-B18]">
      <seq>caaagttgttggtattgaattttagatttttgaggagtttccaaagtaacaaagtttgaagcatgtggaggaactatggagcttctgctgattcattttatcaggtccgtcctgaatgtgctgatgatgttcctgaaaccaagtttagaatcaaggttgggaaaactttaagttcaagaagatggcatgctgcatttacccccgaaggttatcttgatataggcaaaatacttggtcgagtttgtcgtgggggaatccatccatcaattagaggtgaagtttgggagttcttactgggctgttatgattcaaagagcacatttgaggaacgagagcaattacgacaacgtcggagggtacagtatgcagcattgaaagaagaatgtcgtgggatgtttcccttaattggaagtggtcggtttatttctgcacctgtaatcactgaagatggtgaccctattctagatcctatagttcttcaagagttgaatgcggcaaaagaaccaacttcagctggtcaaagttggtccatctgatggttttgaattggtgaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115075" stop="111349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114775" g_stop="114672" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114595" g_stop="114545" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="155" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112755" g_stop="112660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="251" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112431" g_stop="112328" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="355" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111969" g_stop="111800" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="526" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111799" i_stop="111681" i_length="119">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.678" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111680" g_stop="111649" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="558" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E542682" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114775" e_stop="114672"/>
          <exon e_start="114595" e_stop="114545"/>
          <exon e_start="112755" e_stop="112660"/>
          <exon e_start="112431" e_stop="112328"/>
          <exon e_start="111969" e_stop="111800"/>
          <exon e_start="111680" e_stop="111649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAGGTATTATACTGCAGAATATTTGTGCAGTATATTTATATATTTGTTTTTATTTTTCTAACTGTATATTTATTGATAGGTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAGGTAATTGGTATTTTTCTAGACACATACTATTAGTTAGATGAGTACAACTAATTTAAATGTTTGTTGTAATTTTAGTAGATTTTTGTATTTAAGTTTATGTTGTCTTGATCTGTTATGGTAAAGGCTTGAATTTTATTTATGATTTTGAGATTATAAGAGATGCAAATGTTTGGAACAATCATTTTGATTGATACCATTTACATTTTTAAGTTATAAATAAATGAATTCTGTCTTTATGAATCCATTTTTGTCAACATACAACAACATCAAAGCCTCAATCACAACTGATTTTGGGGCTATATAAATCCTATATCCATTTTTGCTCCATCTGAAGTTGTTCCATTCCAATATATAATTTGAGTTTTCTCTACATATTTTACTTACATTCTAATCTCTGCCGGGATTAAAAGGACTCTTAGCTAGTATTGCAGCTCATATAAACTCACCGACATGTCCAAACCTTAATTCCTAAGATTATATGGAAGGCAGTTGAGTTTTGATGTTTGTATTCCAGAAGCTGCTCCCTGCTAGTCAAATCTCCTATCCATCGGTTCCTATAATCTTTTTAAAGAATATTTGGGTCTTCTTGATTATTTGATCGAGATGACTCTTCCCTAGTTAGTAGCAGGTGAGGAACATTTCACGAATTGCTGACATAATCTCTAGAAAAGATCATTAATTTGTCAATTATTTTGGTTGTACTATTATAGGTGTGAATTAACAACAACAACTACTATTACAAGTCTACGACTCAAAACCAAGCAAGTTGGAGTCGGCTATACGTATCATCACTGTCCATGTTGCTTCATTTAAGCTCATCTTAGCTAGTCTATGGTGAATAATCCTAACAATACTGAAAACAGGTGGCGGGAACTAGTCTAGAATTTCTCCCGTTACAACACTTGCTGTTTTTTTCCTCTACTTAAATGGTGTAGACTGATTTCATGATTGTTCATAAGTCTAAACTTGAGCATTTTGGGCGATCTGAAATTTACCTATCAGGGGCAAGGATAAAGCCTTTGCCCCCCTTCCCAAAATCCTGTGTAAACATGGAATAATGAGGATACAAAAATATTATGAAGGGGATGACAAGAAATATAATAACAGAATAAAAGAAGAATTTGTTACCATTTTAACTACTATTATTTTTAGTTGTATGAAAAGAAATTGTCTTTTCTGTTTACCACCAGAACAAACTGATATTAATTCATAAAATGAGGGTCTGATAATACATCAATTTTTTATAAGATTAGCTAAAAATTGTATTGATATTTTATTACTATAATTGTTGGATATGTTCTACAACATTGAATAAGATTATAAATGATCATAGATAGAGTCGCAAGTAATGTGAAGATAAAGGACAAAATTAGAGAAGGTCACCTGAGATGGTTTGATCATGTCCCATATAGACTTCAAATTGTATTGATGTATAGGTGCGACACTGATCTTAGTTGTTGTTACAACAACTAAGACTCCCAAATATCTAACCATCTTAGCTGTTGTTACACTTACATAAGGTTTGGCATTAGGAATGAATTTTGTTAAAAACTTGTGTGTCAATGTAAAGATAATTGTGAGATTTGAAAGAACCTCTAGTTTTAGATAACTCATGATTTACTCTGTAATGAATGAACTCGGTAGACTGTGAAGGAAGGGCATTCATATAATGACCTCAACTTGGTTTGGAATTGATGTGTAATTAATTGATGGCTTGAATTGAATCCTTGTCACCCTTCATTTCTAATGTTTTGCCTCATATTTATTATCTAATAATCTACTTATTCAGGTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGGGTAAGGTTAGCTTCATGATTTGTAAGTTACTTTCGGTTTATGTGCCAATATGATTCAGGAATATTGCAATTCTGCATTTTTATCATTTTTACTGTTTGTTTGATGTTTTTTCTGTGTGGGACTAATTAAAAGAACTTGTGACATAATCCTAGTCTTTATAAGTATTTCATGTAAGTTCATGCATCAGCGTAACAGAATGTTTAGTATTCGAGTATTTGTGGCTTTTAGGGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAGGTATTTTACTTTCCTTACTAAGCAAATATAAATATATCCAGGCAACAATTAATTTTTTTCAAACTGTATGCTTCATCATCCTAAATTAGTTACTCGAGTAGAATTACAATAGAAGTTGTTGTTGGAGGTGACTCCAACATGTTTGTTTTCAGCTGCTTGCATGAAATTTTTATGCTCAGTGGTTTCCATAGCTTCATATCTGAAGATTTACCTTTTGCGAATTTTGTATCTGTGGTTCGGCAATAGACAAATACATTCTCATGTGAAATTTGATAATACTTTGCCATTCGACAGTATATATCAATACCTGATCCATATCAAAATCACATTCTCAACGCACATTTCTTGTATGCATCAGGGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAAGAACCAACTTCAGCTGGTC-AAGTTGGTAAATACTTAATATGTTCCCCAAGTAGTGTGATTTCTCTTTCTCTTCCTTTCTGATGGAAGGGCTCTTGGATGCTGTATAAAGTGACGATCGTTTTTTTGGACATCGTGCAATTACAGGTCCATCTGATGGTTTTGAATTGGTGAAGGAG</genome_strand>
        <mrna_strand>CAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG............................................................................GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG....................................................................................................................................................................................................................................GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAAGTTG.......................................................................................................................GTCCATCTGATGGTTTTGAATTGGTGAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301671" ref_strand="+" ref_description="SGN-E301671 [cLEW-23-H15]">
      <seq>aaagttgttggtattgaattttagatttttgaggagtttccaaagtaacaaagtttgaagcatgtggaggaactatggagcttctgctgattcattttatcaggtccgtcctgaatgtgctgatgatgttcctgaaaccaagtttagaatcaaggttgggaaaactttaagttcaagaagatggcatgctgcatttacccccgaaggttatcttgatataggcaaaatacttggtcgagtttgtcgtgggggaatccatccatcaattagaggtgaagtttgggagttcttactgggctgttatgattcaaagagcacatttgaggaacgagagcaattacgacaacgtcggagggtacagtatgcagcattgaaagaagaatgtcgtgggatgtttcccttaattggaagtggtcggtttatttctgcacctgtaatcactgaagatggtgaccctattctagatcctatagttcttcaagagttgaatgcggcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115074" stop="111525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114774" g_stop="114672" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114595" g_stop="114545" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="154" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112755" g_stop="112660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="250" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112431" g_stop="112328" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="354" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111969" g_stop="111825" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="499" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E301671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114774" e_stop="114672"/>
          <exon e_start="114595" e_stop="114545"/>
          <exon e_start="112755" e_stop="112660"/>
          <exon e_start="112431" e_stop="112328"/>
          <exon e_start="111969" e_stop="111825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAGGTATTATACTGCAGAATATTTGTGCAGTATATTTATATATTTGTTTTTATTTTTCTAACTGTATATTTATTGATAGGTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAGGTAATTGGTATTTTTCTAGACACATACTATTAGTTAGATGAGTACAACTAATTTAAATGTTTGTTGTAATTTTAGTAGATTTTTGTATTTAAGTTTATGTTGTCTTGATCTGTTATGGTAAAGGCTTGAATTTTATTTATGATTTTGAGATTATAAGAGATGCAAATGTTTGGAACAATCATTTTGATTGATACCATTTACATTTTTAAGTTATAAATAAATGAATTCTGTCTTTATGAATCCATTTTTGTCAACATACAACAACATCAAAGCCTCAATCACAACTGATTTTGGGGCTATATAAATCCTATATCCATTTTTGCTCCATCTGAAGTTGTTCCATTCCAATATATAATTTGAGTTTTCTCTACATATTTTACTTACATTCTAATCTCTGCCGGGATTAAAAGGACTCTTAGCTAGTATTGCAGCTCATATAAACTCACCGACATGTCCAAACCTTAATTCCTAAGATTATATGGAAGGCAGTTGAGTTTTGATGTTTGTATTCCAGAAGCTGCTCCCTGCTAGTCAAATCTCCTATCCATCGGTTCCTATAATCTTTTTAAAGAATATTTGGGTCTTCTTGATTATTTGATCGAGATGACTCTTCCCTAGTTAGTAGCAGGTGAGGAACATTTCACGAATTGCTGACATAATCTCTAGAAAAGATCATTAATTTGTCAATTATTTTGGTTGTACTATTATAGGTGTGAATTAACAACAACAACTACTATTACAAGTCTACGACTCAAAACCAAGCAAGTTGGAGTCGGCTATACGTATCATCACTGTCCATGTTGCTTCATTTAAGCTCATCTTAGCTAGTCTATGGTGAATAATCCTAACAATACTGAAAACAGGTGGCGGGAACTAGTCTAGAATTTCTCCCGTTACAACACTTGCTGTTTTTTTCCTCTACTTAAATGGTGTAGACTGATTTCATGATTGTTCATAAGTCTAAACTTGAGCATTTTGGGCGATCTGAAATTTACCTATCAGGGGCAAGGATAAAGCCTTTGCCCCCCTTCCCAAAATCCTGTGTAAACATGGAATAATGAGGATACAAAAATATTATGAAGGGGATGACAAGAAATATAATAACAGAATAAAAGAAGAATTTGTTACCATTTTAACTACTATTATTTTTAGTTGTATGAAAAGAAATTGTCTTTTCTGTTTACCACCAGAACAAACTGATATTAATTCATAAAATGAGGGTCTGATAATACATCAATTTTTTATAAGATTAGCTAAAAATTGTATTGATATTTTATTACTATAATTGTTGGATATGTTCTACAACATTGAATAAGATTATAAATGATCATAGATAGAGTCGCAAGTAATGTGAAGATAAAGGACAAAATTAGAGAAGGTCACCTGAGATGGTTTGATCATGTCCCATATAGACTTCAAATTGTATTGATGTATAGGTGCGACACTGATCTTAGTTGTTGTTACAACAACTAAGACTCCCAAATATCTAACCATCTTAGCTGTTGTTACACTTACATAAGGTTTGGCATTAGGAATGAATTTTGTTAAAAACTTGTGTGTCAATGTAAAGATAATTGTGAGATTTGAAAGAACCTCTAGTTTTAGATAACTCATGATTTACTCTGTAATGAATGAACTCGGTAGACTGTGAAGGAAGGGCATTCATATAATGACCTCAACTTGGTTTGGAATTGATGTGTAATTAATTGATGGCTTGAATTGAATCCTTGTCACCCTTCATTTCTAATGTTTTGCCTCATATTTATTATCTAATAATCTACTTATTCAGGTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGGGTAAGGTTAGCTTCATGATTTGTAAGTTACTTTCGGTTTATGTGCCAATATGATTCAGGAATATTGCAATTCTGCATTTTTATCATTTTTACTGTTTGTTTGATGTTTTTTCTGTGTGGGACTAATTAAAAGAACTTGTGACATAATCCTAGTCTTTATAAGTATTTCATGTAAGTTCATGCATCAGCGTAACAGAATGTTTAGTATTCGAGTATTTGTGGCTTTTAGGGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAGGTATTTTACTTTCCTTACTAAGCAAATATAAATATATCCAGGCAACAATTAATTTTTTTCAAACTGTATGCTTCATCATCCTAAATTAGTTACTCGAGTAGAATTACAATAGAAGTTGTTGTTGGAGGTGACTCCAACATGTTTGTTTTCAGCTGCTTGCATGAAATTTTTATGCTCAGTGGTTTCCATAGCTTCATATCTGAAGATTTACCTTTTGCGAATTTTGTATCTGTGGTTCGGCAATAGACAAATACATTCTCATGTGAAATTTGATAATACTTTGCCATTCGACAGTATATATCAATACCTGATCCATATCAAAATCACATTCTCAACGCACATTTCTTGTATGCATCAGGGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAA</genome_strand>
        <mrna_strand>AAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG............................................................................GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG....................................................................................................................................................................................................................................GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542675" ref_strand="+" ref_description="SGN-E542675 [TUS-64-B14]">
      <seq>caaagttgttggtattgaattttagatttttgaggagtttccaaagtaacaaagtttgaagcatgtggaggaactatggagcttctgctgattcattttatcaggtccgtcctgaatgtgctgatgatgttcctgaaaccaagtttagaatcaaggttgggaaaactttaagttcaagaagatggcatgctgcatttacccccgaaggttatcttgatataggcaaaatacttggtcgagtttgtcgtgggggaatccatccatcaattagaggtgaagtttgggagttcttactgggctgttatgattcaaagagcacatttgaggaacgagagcaattacgacaacgtcggagggtacagtatgcagcattgaaagaagaatgtcgtgggatgtttcccttaattggaagtggtcggtttatttctgcacctgtaatcactgaagatggtgaccctattctagatcctatagttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115075" stop="111546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114775" g_stop="114672" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114595" g_stop="114545" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="155" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112755" g_stop="112660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="251" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112431" g_stop="112328" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="355" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111969" g_stop="111846" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="479" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E542675" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114775" e_stop="114672"/>
          <exon e_start="114595" e_stop="114545"/>
          <exon e_start="112755" e_stop="112660"/>
          <exon e_start="112431" e_stop="112328"/>
          <exon e_start="111969" e_stop="111846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAGGTATTATACTGCAGAATATTTGTGCAGTATATTTATATATTTGTTTTTATTTTTCTAACTGTATATTTATTGATAGGTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAGGTAATTGGTATTTTTCTAGACACATACTATTAGTTAGATGAGTACAACTAATTTAAATGTTTGTTGTAATTTTAGTAGATTTTTGTATTTAAGTTTATGTTGTCTTGATCTGTTATGGTAAAGGCTTGAATTTTATTTATGATTTTGAGATTATAAGAGATGCAAATGTTTGGAACAATCATTTTGATTGATACCATTTACATTTTTAAGTTATAAATAAATGAATTCTGTCTTTATGAATCCATTTTTGTCAACATACAACAACATCAAAGCCTCAATCACAACTGATTTTGGGGCTATATAAATCCTATATCCATTTTTGCTCCATCTGAAGTTGTTCCATTCCAATATATAATTTGAGTTTTCTCTACATATTTTACTTACATTCTAATCTCTGCCGGGATTAAAAGGACTCTTAGCTAGTATTGCAGCTCATATAAACTCACCGACATGTCCAAACCTTAATTCCTAAGATTATATGGAAGGCAGTTGAGTTTTGATGTTTGTATTCCAGAAGCTGCTCCCTGCTAGTCAAATCTCCTATCCATCGGTTCCTATAATCTTTTTAAAGAATATTTGGGTCTTCTTGATTATTTGATCGAGATGACTCTTCCCTAGTTAGTAGCAGGTGAGGAACATTTCACGAATTGCTGACATAATCTCTAGAAAAGATCATTAATTTGTCAATTATTTTGGTTGTACTATTATAGGTGTGAATTAACAACAACAACTACTATTACAAGTCTACGACTCAAAACCAAGCAAGTTGGAGTCGGCTATACGTATCATCACTGTCCATGTTGCTTCATTTAAGCTCATCTTAGCTAGTCTATGGTGAATAATCCTAACAATACTGAAAACAGGTGGCGGGAACTAGTCTAGAATTTCTCCCGTTACAACACTTGCTGTTTTTTTCCTCTACTTAAATGGTGTAGACTGATTTCATGATTGTTCATAAGTCTAAACTTGAGCATTTTGGGCGATCTGAAATTTACCTATCAGGGGCAAGGATAAAGCCTTTGCCCCCCTTCCCAAAATCCTGTGTAAACATGGAATAATGAGGATACAAAAATATTATGAAGGGGATGACAAGAAATATAATAACAGAATAAAAGAAGAATTTGTTACCATTTTAACTACTATTATTTTTAGTTGTATGAAAAGAAATTGTCTTTTCTGTTTACCACCAGAACAAACTGATATTAATTCATAAAATGAGGGTCTGATAATACATCAATTTTTTATAAGATTAGCTAAAAATTGTATTGATATTTTATTACTATAATTGTTGGATATGTTCTACAACATTGAATAAGATTATAAATGATCATAGATAGAGTCGCAAGTAATGTGAAGATAAAGGACAAAATTAGAGAAGGTCACCTGAGATGGTTTGATCATGTCCCATATAGACTTCAAATTGTATTGATGTATAGGTGCGACACTGATCTTAGTTGTTGTTACAACAACTAAGACTCCCAAATATCTAACCATCTTAGCTGTTGTTACACTTACATAAGGTTTGGCATTAGGAATGAATTTTGTTAAAAACTTGTGTGTCAATGTAAAGATAATTGTGAGATTTGAAAGAACCTCTAGTTTTAGATAACTCATGATTTACTCTGTAATGAATGAACTCGGTAGACTGTGAAGGAAGGGCATTCATATAATGACCTCAACTTGGTTTGGAATTGATGTGTAATTAATTGATGGCTTGAATTGAATCCTTGTCACCCTTCATTTCTAATGTTTTGCCTCATATTTATTATCTAATAATCTACTTATTCAGGTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGGGTAAGGTTAGCTTCATGATTTGTAAGTTACTTTCGGTTTATGTGCCAATATGATTCAGGAATATTGCAATTCTGCATTTTTATCATTTTTACTGTTTGTTTGATGTTTTTTCTGTGTGGGACTAATTAAAAGAACTTGTGACATAATCCTAGTCTTTATAAGTATTTCATGTAAGTTCATGCATCAGCGTAACAGAATGTTTAGTATTCGAGTATTTGTGGCTTTTAGGGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAGGTATTTTACTTTCCTTACTAAGCAAATATAAATATATCCAGGCAACAATTAATTTTTTTCAAACTGTATGCTTCATCATCCTAAATTAGTTACTCGAGTAGAATTACAATAGAAGTTGTTGTTGGAGGTGACTCCAACATGTTTGTTTTCAGCTGCTTGCATGAAATTTTTATGCTCAGTGGTTTCCATAGCTTCATATCTGAAGATTTACCTTTTGCGAATTTTGTATCTGTGGTTCGGCAATAGACAAATACATTCTCATGTGAAATTTGATAATACTTTGCCATTCGACAGTATATATCAATACCTGATCCATATCAAAATCACATTCTCAACGCACATTTCTTGTATGCATCAGGGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTT</genome_strand>
        <mrna_strand>CAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG............................................................................GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG....................................................................................................................................................................................................................................GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272966" ref_strand="+" ref_description="SGN-E272966 [cLEM-25-K5]">
      <seq>tcttgttgttgaaattcttgatcaaagttgttggtattgaattttagatttttgaggagtttccaaagtaacaaactttgaagcatgtggaggaactatggagcttctgctgattcattttatcaggtccgtcctgaatgtgctgatgatgtacctgaaaccaagtttagaatcaaggttgggaaaactttaagttcaagaagatggcatgctgcatttacccccgaaggttatcttgatataggcaaaatacttggtcgagtgtgtcgtgggggaatccatccatcaattagaggtgaagtttgggagtgcttactgggctgttatgattcaaagagcacatttgaggaacgagagcaattacgacaacgtcggagggtacagattgcagcattgaaagaagaatgtcgtgggatgttttccttaattggaagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115097" stop="111610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114797" g_stop="114672" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114595" g_stop="114545" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="177" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112755" g_stop="112660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="273" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228">
            <donor d_prob="0.915" d_score="0.98"/>
            <acceptor a_prob="0.556" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112431" g_stop="112328" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="377" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111969" g_stop="111909" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="438" r_length="61" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E272966" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114797" e_stop="114672"/>
          <exon e_start="114595" e_stop="114545"/>
          <exon e_start="112755" e_stop="112660"/>
          <exon e_start="112431" e_stop="112328"/>
          <exon e_start="111969" e_stop="111909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGTTGAAATTCTTGATCAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAGGTATTATACTGCAGAATATTTGTGCAGTATATTTATATATTTGTTTTTATTTTTCTAACTGTATATTTATTGATAGGTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAGGTAATTGGTATTTTTCTAGACACATACTATTAGTTAGATGAGTACAACTAATTTAAATGTTTGTTGTAATTTTAGTAGATTTTTGTATTTAAGTTTATGTTGTCTTGATCTGTTATGGTAAAGGCTTGAATTTTATTTATGATTTTGAGATTATAAGAGATGCAAATGTTTGGAACAATCATTTTGATTGATACCATTTACATTTTTAAGTTATAAATAAATGAATTCTGTCTTTATGAATCCATTTTTGTCAACATACAACAACATCAAAGCCTCAATCACAACTGATTTTGGGGCTATATAAATCCTATATCCATTTTTGCTCCATCTGAAGTTGTTCCATTCCAATATATAATTTGAGTTTTCTCTACATATTTTACTTACATTCTAATCTCTGCCGGGATTAAAAGGACTCTTAGCTAGTATTGCAGCTCATATAAACTCACCGACATGTCCAAACCTTAATTCCTAAGATTATATGGAAGGCAGTTGAGTTTTGATGTTTGTATTCCAGAAGCTGCTCCCTGCTAGTCAAATCTCCTATCCATCGGTTCCTATAATCTTTTTAAAGAATATTTGGGTCTTCTTGATTATTTGATCGAGATGACTCTTCCCTAGTTAGTAGCAGGTGAGGAACATTTCACGAATTGCTGACATAATCTCTAGAAAAGATCATTAATTTGTCAATTATTTTGGTTGTACTATTATAGGTGTGAATTAACAACAACAACTACTATTACAAGTCTACGACTCAAAACCAAGCAAGTTGGAGTCGGCTATACGTATCATCACTGTCCATGTTGCTTCATTTAAGCTCATCTTAGCTAGTCTATGGTGAATAATCCTAACAATACTGAAAACAGGTGGCGGGAACTAGTCTAGAATTTCTCCCGTTACAACACTTGCTGTTTTTTTCCTCTACTTAAATGGTGTAGACTGATTTCATGATTGTTCATAAGTCTAAACTTGAGCATTTTGGGCGATCTGAAATTTACCTATCAGGGGCAAGGATAAAGCCTTTGCCCCCCTTCCCAAAATCCTGTGTAAACATGGAATAATGAGGATACAAAAATATTATGAAGGGGATGACAAGAAATATAATAACAGAATAAAAGAAGAATTTGTTACCATTTTAACTACTATTATTTTTAGTTGTATGAAAAGAAATTGTCTTTTCTGTTTACCACCAGAACAAACTGATATTAATTCATAAAATGAGGGTCTGATAATACATCAATTTTTTATAAGATTAGCTAAAAATTGTATTGATATTTTATTACTATAATTGTTGGATATGTTCTACAACATTGAATAAGATTATAAATGATCATAGATAGAGTCGCAAGTAATGTGAAGATAAAGGACAAAATTAGAGAAGGTCACCTGAGATGGTTTGATCATGTCCCATATAGACTTCAAATTGTATTGATGTATAGGTGCGACACTGATCTTAGTTGTTGTTACAACAACTAAGACTCCCAAATATCTAACCATCTTAGCTGTTGTTACACTTACATAAGGTTTGGCATTAGGAATGAATTTTGTTAAAAACTTGTGTGTCAATGTAAAGATAATTGTGAGATTTGAAAGAACCTCTAGTTTTAGATAACTCATGATTTACTCTGTAATGAATGAACTCGGTAGACTGTGAAGGAAGGGCATTCATATAATGACCTCAACTTGGTTTGGAATTGATGTGTAATTAATTGATGGCTTGAATTGAATCCTTGTCACCCTTCATTTCTAATGTTTTGCCTCATATTTATTATCTAATAATCTACTTATTCAGGTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGGGTAAGGTTAGCTTCATGATTTGTAAGTTACTTTCGGTTTATGTGCCAATATGATTCAGGAATATTGCAATTCTGCATTTTTATCATTTTTACTGTTTGTTTGATGTTTTTTCTGTGTGGGACTAATTAAAAGAACTTGTGACATAATCCTAGTCTTTATAAGTATTTCATGTAAGTTCATGCATCAGCGTAACAGAATGTTTAGTATTCGAGTATTTGTGGCTTTTAGGGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAGGTATTTTACTTTCCTTACTAAGCAAATATAAATATATCCAGGCAACAATTAATTTTTTTCAAACTGTATGCTTCATCATCCTAAATTAGTTACTCGAGTAGAATTACAATAGAAGTTGTTGTTGGAGGTGACTCCAACATGTTTGTTTTCAGCTGCTTGCATGAAATTTTTATGCTCAGTGGTTTCCATAGCTTCATATCTGAAGATTTACCTTTTGCGAATTTTGTATCTGTGGTTCGGCAATAGACAAATACATTCTCATGTGAAATTTGATAATACTTTGCCATTCGACAGTATATATCAATACCTGATCCATATCAAAATCACATTCTCAACGCACATTTCTTGTATGCATCAGGGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGT</genome_strand>
        <mrna_strand>TCTTGTTGTTGAAATTCTTGATCAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAACTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG............................................................................GTCCGTCCTGAATGTGCTGATGATGTACCTGAAACCAAGTTTAGAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTGTGTCGTGGG....................................................................................................................................................................................................................................GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTGCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................GGTACAGATTGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTTCCTTAATTGGAAGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310121" ref_strand="+" ref_description="SGN-E310121 [cLEZ-8-A1]">
      <seq>cctgaatgtgctgatgatgttcctgaaaccaagtttagaatcaaggttgggaaaactttaagttcaagaagatggcatgctgcatttacccccgaaggttatcttgatataggcaaaatacttggtcgagtttgtcgtgggggaatccatccatcaattagaggtgaagtttgggagttcttactgggctgttatgattcaaagagcacatttgaggaacgagagcaattacgacaacgtcggagggtacagtatgcagcattgaaagaagaatgtcgtgggatgtttcccttaattggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114889" stop="111611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114589" g_stop="114545" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112755" g_stop="112660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="141" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112431" g_stop="112328" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="245" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111969" g_stop="111911" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="304" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E310121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114589" e_stop="114545"/>
          <exon e_start="112755" e_stop="112660"/>
          <exon e_start="112431" e_stop="112328"/>
          <exon e_start="111969" e_stop="111911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAGGTAATTGGTATTTTTCTAGACACATACTATTAGTTAGATGAGTACAACTAATTTAAATGTTTGTTGTAATTTTAGTAGATTTTTGTATTTAAGTTTATGTTGTCTTGATCTGTTATGGTAAAGGCTTGAATTTTATTTATGATTTTGAGATTATAAGAGATGCAAATGTTTGGAACAATCATTTTGATTGATACCATTTACATTTTTAAGTTATAAATAAATGAATTCTGTCTTTATGAATCCATTTTTGTCAACATACAACAACATCAAAGCCTCAATCACAACTGATTTTGGGGCTATATAAATCCTATATCCATTTTTGCTCCATCTGAAGTTGTTCCATTCCAATATATAATTTGAGTTTTCTCTACATATTTTACTTACATTCTAATCTCTGCCGGGATTAAAAGGACTCTTAGCTAGTATTGCAGCTCATATAAACTCACCGACATGTCCAAACCTTAATTCCTAAGATTATATGGAAGGCAGTTGAGTTTTGATGTTTGTATTCCAGAAGCTGCTCCCTGCTAGTCAAATCTCCTATCCATCGGTTCCTATAATCTTTTTAAAGAATATTTGGGTCTTCTTGATTATTTGATCGAGATGACTCTTCCCTAGTTAGTAGCAGGTGAGGAACATTTCACGAATTGCTGACATAATCTCTAGAAAAGATCATTAATTTGTCAATTATTTTGGTTGTACTATTATAGGTGTGAATTAACAACAACAACTACTATTACAAGTCTACGACTCAAAACCAAGCAAGTTGGAGTCGGCTATACGTATCATCACTGTCCATGTTGCTTCATTTAAGCTCATCTTAGCTAGTCTATGGTGAATAATCCTAACAATACTGAAAACAGGTGGCGGGAACTAGTCTAGAATTTCTCCCGTTACAACACTTGCTGTTTTTTTCCTCTACTTAAATGGTGTAGACTGATTTCATGATTGTTCATAAGTCTAAACTTGAGCATTTTGGGCGATCTGAAATTTACCTATCAGGGGCAAGGATAAAGCCTTTGCCCCCCTTCCCAAAATCCTGTGTAAACATGGAATAATGAGGATACAAAAATATTATGAAGGGGATGACAAGAAATATAATAACAGAATAAAAGAAGAATTTGTTACCATTTTAACTACTATTATTTTTAGTTGTATGAAAAGAAATTGTCTTTTCTGTTTACCACCAGAACAAACTGATATTAATTCATAAAATGAGGGTCTGATAATACATCAATTTTTTATAAGATTAGCTAAAAATTGTATTGATATTTTATTACTATAATTGTTGGATATGTTCTACAACATTGAATAAGATTATAAATGATCATAGATAGAGTCGCAAGTAATGTGAAGATAAAGGACAAAATTAGAGAAGGTCACCTGAGATGGTTTGATCATGTCCCATATAGACTTCAAATTGTATTGATGTATAGGTGCGACACTGATCTTAGTTGTTGTTACAACAACTAAGACTCCCAAATATCTAACCATCTTAGCTGTTGTTACACTTACATAAGGTTTGGCATTAGGAATGAATTTTGTTAAAAACTTGTGTGTCAATGTAAAGATAATTGTGAGATTTGAAAGAACCTCTAGTTTTAGATAACTCATGATTTACTCTGTAATGAATGAACTCGGTAGACTGTGAAGGAAGGGCATTCATATAATGACCTCAACTTGGTTTGGAATTGATGTGTAATTAATTGATGGCTTGAATTGAATCCTTGTCACCCTTCATTTCTAATGTTTTGCCTCATATTTATTATCTAATAATCTACTTATTCAGGTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGGGTAAGGTTAGCTTCATGATTTGTAAGTTACTTTCGGTTTATGTGCCAATATGATTCAGGAATATTGCAATTCTGCATTTTTATCATTTTTACTGTTTGTTTGATGTTTTTTCTGTGTGGGACTAATTAAAAGAACTTGTGACATAATCCTAGTCTTTATAAGTATTTCATGTAAGTTCATGCATCAGCGTAACAGAATGTTTAGTATTCGAGTATTTGTGGCTTTTAGGGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAGGTATTTTACTTTCCTTACTAAGCAAATATAAATATATCCAGGCAACAATTAATTTTTTTCAAACTGTATGCTTCATCATCCTAAATTAGTTACTCGAGTAGAATTACAATAGAAGTTGTTGTTGGAGGTGACTCCAACATGTTTGTTTTCAGCTGCTTGCATGAAATTTTTATGCTCAGTGGTTTCCATAGCTTCATATCTGAAGATTTACCTTTTGCGAATTTTGTATCTGTGGTTCGGCAATAGACAAATACATTCTCATGTGAAATTTGATAATACTTTGCCATTCGACAGTATATATCAATACCTGATCCATATCAAAATCACATTCTCAACGCACATTTCTTGTATGCATCAGGGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTG</genome_strand>
        <mrna_strand>CCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG....................................................................................................................................................................................................................................GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG......................................................................................................................................................................................................................................................................................................................................................................GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746015" ref_strand="+" ref_description="SGN-E746015 [GI|47105387]">
      <seq>ggttatggaataaagaaggtttctaattgagagagagtagacgataatggagttgctgggaggaagaagagcaatcaattgataggttttggtgtgagaaagatagagacgccacgctgaagagatatatacagacacggcagacgccattattaatttatattagtagtaataatctttaatactccataaggactgacatttttgacccaaaataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgttcagcagagtggtggctattcacacataattgctgcatcaggttcatttgggaaaaatatattaccgcgtgcagcagctcttctggatatttctccaattactgatgtcacaaagatttctggatcaaacctctttattaggccaatatatgcaggaaatgctctttccactgttcgttacacaggttccagcccatgtatgttgagcattagagctacatcttttcctgttgcttcagaaacagctgatttgaaatctaatgctgcgtcaatagatcaagttgatctttcaaccttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgcccagatcttggaaatgcacgtattgtagtaactggtggacgaggtgtaaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgtaaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaagatgaagatgatgtatgtggtggatgacatttgttatccaggaataatataatactaatatcattcactaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119335" stop="124909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119634" g_stop="119949" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121141" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="499" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121983" g_stop="122194" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="711" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122195" i_stop="122744" i_length="550">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122745" g_stop="122908" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="875" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123059" g_stop="123220" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="876" r_stop="1037" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123221" i_stop="123393" i_length="173">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123394" g_stop="123446" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1090" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123766" g_stop="123906" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1231" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124432" g_stop="124596" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1232" r_stop="1396" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1409" polyA_stop="1426"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E746015" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1396</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119634" e_stop="119949"/>
          <exon e_start="120959" e_stop="121141"/>
          <exon e_start="121983" e_stop="122194"/>
          <exon e_start="122745" e_stop="122908"/>
          <exon e_start="123059" e_stop="123220"/>
          <exon e_start="123394" e_stop="123446"/>
          <exon e_start="123766" e_stop="123906"/>
          <exon e_start="124432" e_stop="124596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAGGTGATTTTTTAGTGGTAACCTTATCCGGAGAACACTACAATGGATTGAGATGTTCTTGTAGATAGTGAACACTTTTTTCAAGCGATTTTCCTAAACTATTTCCTGTCATGTGTGATTTGTAATATTGAGACATTGGCATTAGTTAGCGCTATGTTAAATGGTAAGTTTCCTGTTATTAGGTCTGATATACATGTTATTATTACATCTTGTTTCGTGACTATGACCATTTTATATCATGTTTGTTTTATGACATGAAGAATGTACTTTGGGTCTTTAAAAATTGTACGTTTGTGTAAAACTAGTTGTTATATGGCAATATCGTCCAGGGATGATTATTTCTGGAATTCTGTTAGCTGTAAAGTTGCTAACTTCTTCATAGAGTTATTTTGGAAATCGTAGAACTACAGTGTTTACTATTTTTTTTTAACCACTATAATGCATCCTGCTACAAAATGAGATCTTTTCTTACAGTGACTGCGTCATTCGTTTTGTCTTCTCAGCTCCAGTGTAAGCTGTGTTGGTTTTAATTGGATCATCTTTAATGTGACAGGCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTA</genome_strand>
        <mrna_strand>GGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG.............................................................................................................................................................................TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261493" ref_strand="+" ref_description="SGN-E261493 [cLEG-57-I13]">
      <seq>agttgagagagagtagacgataatggagttgctgggaggaacaagaggaatcaattgataagttttggtgtgagaaagatagagacaccacgctgaagagatgtataccgacacagcagacgccattattaattgatattagtagtaataatctattgatactccataaggactgacatttttgacccaaaataccaccagttgaagcgagcgaactggatatgggcattggaacgatgctctccttattcggaaggctctctaatacttcacggataaccccttttcgatctcttagaacattggttttatctgaacatgaaggaggatgaatccccaactcatcattaagtgctgtggaggctgcagaatccttaggaggggacaattcgatatcggtgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcacgtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgtgcaacagagtggaggctattcacacataattgctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119360" stop="122391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119658" g_stop="119949" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.955" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121141" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="476" r_length="183" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121983" g_stop="122091" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="585" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E261493" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119658" e_stop="119949"/>
          <exon e_start="120959" e_stop="121141"/>
          <exon e_start="121983" e_stop="122091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCT-TTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCAT</genome_strand>
        <mrna_strand>AGTTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAACAAGAGGAATCAATTGATAAGTTTTGGTGTGAGAAAGATAGAGACACCACGCTGAAGAGATGTATACCGACACAGCAGACGCCATTATTAATTGATATTAGTAGTAATAATCTATTGATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACCAGTTGAAGCGAGCGAACTGGATATGGGCATTGGAACGATGCTCTCCTTATTCGGAAGGCTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGAACATTGGTTTTATCTGAACATGAAGGAGGATGAATCCCCAACTCATCATTAAGTGCTGTGGAGGCTGCAGAATCCTTAGGAGGGGACAATTCGATATCGGTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTGCAACAGAGTGGAGGCTATTCACACATAATTGCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329205" ref_strand="+" ref_description="SGN-E329205 [cTOD-2-A1]">
      <seq>agaagagcaatcaattgataggttttggtgtgagaaagatagagacgccacgctgaagagatatatacagacacggcagacgccattattaatttatattagtagtaataatctttaatactccataaggactgacatttttgacccaaaataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgttcagcagagtggtggctattcacacataattgctgcatcaggttcatttgggaaaaatatattaccgcgtgcagcagctcttctggatatttctccaattactgatgtcacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119398" stop="122466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119698" g_stop="119949" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121141" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="435" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121983" g_stop="122166" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="619" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E329205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119698" e_stop="119949"/>
          <exon e_start="120959" e_stop="121141"/>
          <exon e_start="121983" e_stop="122166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAA</genome_strand>
        <mrna_strand>AGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548755" ref_strand="+" ref_description="SGN-E548755 [TUS-64-B23]">
      <seq>caaaataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtaactcctctttggatgctggactgttttgtttcaccatgtttcccacggaatactaaccttatgctcctactggttttgcaatttagtttgctcgcttttcagtaacatcttggctaggacatccctagttcagtgtgaaaaagagtagttgtattctattgacatacttaagtgattgtgtaaaacacatttacaatgttcacttcgttacagagagagaatgatcttccgaggaggagaaaagagaggatgatattgctttttctctgtcttcttgtactaaaattcttggaaatgccattttcaactgagtgctgaactttggcaagcaagccatagaacaaaatccaggaacgatgataggtgatcttgtcaagagtatccaaagtatacctgttaactcttactcacaatattatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119544" stop="121868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119844" g_stop="119949" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121568" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="716" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E548755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119844" e_stop="119949"/>
          <exon e_start="120959" e_stop="121568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTT</genome_strand>
        <mrna_strand>CAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301595" ref_strand="+" ref_description="SGN-E301595 [cLEW-23-J16]">
      <seq>aataccacaagttgaagcgagcgaactggatatggccattggaacgatgctctccttattcataaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttacagttcttaagtaactcctctatggatgctggactgttttgcttcaccatgtttcccacagaatactaaccttatgctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119547" stop="121513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119847" g_stop="119949" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121213" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="358" r_length="255" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E301595" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119847" e_stop="119949"/>
          <exon e_start="120959" e_stop="121213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTA</genome_strand>
        <mrna_strand>AATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCATAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTACAGTTCTTAAGTAACTCCTCTATGGATGCTGGACTGTTTTGCTTCACCATGTTTCCCACAGAATACTAACCTTATGCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366422" ref_strand="+" ref_description="SGN-E366422 [cLPT-1-B4]">
      <seq>ctctcctcattcagaaaactctctaatacttcacggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttctgtttctcaggtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgttcagcagagtggtggctattcacacataattgctgcatcaggttcatttgggaaaaatgtattaccgcgtgcagcagctcttctggatatttctccaattactgatgtcacaaagatttctggatcaaacctctttattaggccaatatatgcaggaaatgctctttccactgttcgttacacaggttccagcccatgtatgttgagcattagagctacatcttttcctgttgcttcagaaacagctgatttgaaatctaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119596" stop="123168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119896" g_stop="119949" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121141" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="237" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121983" g_stop="122194" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="449" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122195" i_stop="122744" i_length="550">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122745" g_stop="122868" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="573" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E366422" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119896" e_stop="119949"/>
          <exon e_start="120959" e_stop="121141"/>
          <exon e_start="121983" e_stop="122194"/>
          <exon e_start="122745" e_stop="122868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAGGTGATTTTTTAGTGGTAACCTTATCCGGAGAACACTACAATGGATTGAGATGTTCTTGTAGATAGTGAACACTTTTTTCAAGCGATTTTCCTAAACTATTTCCTGTCATGTGTGATTTGTAATATTGAGACATTGGCATTAGTTAGCGCTATGTTAAATGGTAAGTTTCCTGTTATTAGGTCTGATATACATGTTATTATTACATCTTGTTTCGTGACTATGACCATTTTATATCATGTTTGTTTTATGACATGAAGAATGTACTTTGGGTCTTTAAAAATTGTACGTTTGTGTAAAACTAGTTGTTATATGGCAATATCGTCCAGGGATGATTATTTCTGGAATTCTGTTAGCTGTAAAGTTGCTAACTTCTTCATAGAGTTATTTTGGAAATCGTAGAACTACAGTGTTTACTATTTTTTTTTAACCACTATAATGCATCCTGCTACAAAATGAGATCTTTTCTTACAGTGACTGCGTCATTCGTTTTGTCTTCTCAGCTCCAGTGTAAGCTGTGTTGGTTTTAATTGGATCATCTTTAATGTGACAGGCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCT</genome_strand>
        <mrna_strand>CTCTCCTCATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCTGTTTCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATGTATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267319" ref_strand="+" ref_description="SGN-E267319 [cLEI-17-K3]">
      <seq>acggataaccccttttcgatctcttagtacattggttttagctgaacatgaaggaggattaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggccaatatatgcaggaaatgctctttccactgttcgttacacaggttccagcccatgtatgttgagcattagagctacatcttttcctgttgcttcagaaacagctgatttgaaatctaatgctgcgtcaatagatcaagttgatctttcaaccttggatgaagatgagtcagttgctaagtcgacatatgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="119628" stop="123391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119928" g_stop="119949" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120959" g_stop="121141" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="205" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121142" i_stop="122744" i_length="1603">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122745" g_stop="122908" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="369" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123059" g_stop="123091" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="402" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E267319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119928" e_stop="119949"/>
          <exon e_start="120959" e_stop="121141"/>
          <exon e_start="122745" e_stop="122908"/>
          <exon e_start="123059" e_stop="123091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATAACCCCTTTTCGATCTGTAAGTCCCTGTTGTTCTTACGCTTTTCAAATTTTATTTTCACTCATCTGAAATAGTCTGAACAAGTCGAAAAGGTAATTTCAATTTGCTTTTCTGCATTTATATGCTTGATAAGGGCTCCGAGGAATCGGCCGGAGCTATCATTCCGATGACGGGTTTGGTAGAATCCAATAGCTTATGTTTAAGAATCCAATTAACTTTTTTTATTTATTTAGAATCTGGAACCCATAAAAAGGTAGTTGGGACAAGTGATTTAGGTTGAATGCTTTAGCTCAGACATGGTGGTTTTAGTGTGTAAAGGAATAAACAGAATAGTTGGTACTTGATGAATCTTCTGAAATTGGGAAGAACAAGAACAAACGTATGTTGCACTTGTTTGTGTTGATTATTGGAAGATAGAATAGGAAGGGGATTATTTTCTCGAATCAATAGCTTAATTAAGAGCTGAACAAATACGTTCTTCAACTTTAATCTTACTTCTCTTCGTCCGTTCCTTATATTACTGCAGCAAAATATTCTGTATTGTTCTTGTACAGCTTAATTGCAGTTTACCCAAGTGAGTTTTATCAGAATACTAGGCTAAGCATTAAATCAAATGCAAGTGGGTCAGGAATTGTCTTTCGAGTAAATGAGGAAGTTAAAGGGATATGATGCAACAACAAAATGCCTAGTGTAATCCCACAAGTAGGATCTGGGGAGGGTAGGATGTACGACCTTAACCCTTACTGTTTCTGGTGCAATGGTTTGATTATATAGGCTTGCTTTGTGATATCTCTAGTTTCTAAAGATTCACATGAATTGAGAATAGGTGTTTTCGAATGTTCTTGTTTAAGGAGGACAAAGGAGAATCTCTGAATAGTCTCTGTGTTTGATAATCATATAGCCTGAATCCATGTATACAAGTTTGAGCTTGAATTTTATAATAGAAGAATTCTGCTTCTTTGCACAATATAAGTTATTCTCAAATGATTGTGCTTAAAGGTACACCTATGCTGTATTGTATGTGTAGCTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAGGTGATTTTTTAGTGGTAACCTTATCCGGAGAACACTACAATGGATTGAGATGTTCTTGTAGATAGTGAACACTTTTTTCAAGCGATTTTCCTAAACTATTTCCTGTCATGTGTGATTTGTAATATTGAGACATTGGCATTAGTTAGCGCTATGTTAAATGGTAAGTTTCCTGTTATTAGGTCTGATATACATGTTATTATTACATCTTGTTTCGTGACTATGACCATTTTATATCATGTTTGTTTTATGACATGAAGAATGTACTTTGGGTCTTTAAAAATTGTACGTTTGTGTAAAACTAGTTGTTATATGGCAATATCGTCCAGGGATGATTATTTCTGGAATTCTGTTAGCTGTAAAGTTGCTAACTTCTTCATAGAGTTATTTTGGAAATCGTAGAACTACAGTGTTTACTATTTTTTTTTAACCACTATAATGCATCCTGCTACAAAATGAGATCTTTTCTTACAGTGACTGCGTCATTCGTTTTGTCTTCTCAGCTCCAGTGTAAGCTGTGTTGGTTTTAATTGGATCATCTTTAATGTGACAGGCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGC</genome_strand>
        <mrna_strand>ACGGATAACCCCTTTTCGATCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204602" ref_strand="+" ref_description="SGN-E204602 [cLEC-14-G13]">
      <seq>ttaatcaaaaactcatcattaagtgctgtggaggctgcaaaatccttaggtggggacaattcgatatcgttgctacttgccggatctggtcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgttcagcagagtggtggctattcacacataattgctgcatcaggttcatttgggaaaaatatattaccgcgtgcagcagctcttctggatatttctccaattactgatgtcacaaagatttctggatcaaacctctttattaggccaatatatgcaggaaatgctctttccactgttcgttacacaggttccagcccatgtatgttgagcattagagctacatcttttcctgttgcttcagaaacagctgatttgaaatctaatgctgcgtcaatagatcaagttgatctttcaaccttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgcccagatcttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="120695" stop="123427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120995" g_stop="121141" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121983" g_stop="122194" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="359" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122195" i_stop="122744" i_length="550">
            <donor d_prob="0.572" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122745" g_stop="122908" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="523" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150">
            <donor d_prob="0.021" d_score="1.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123059" g_stop="123127" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="592" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E204602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120995" e_stop="121141"/>
          <exon e_start="121983" e_stop="122194"/>
          <exon e_start="122745" e_stop="122908"/>
          <exon e_start="123059" e_stop="123127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAGGTGATTTTTTAGTGGTAACCTTATCCGGAGAACACTACAATGGATTGAGATGTTCTTGTAGATAGTGAACACTTTTTTCAAGCGATTTTCCTAAACTATTTCCTGTCATGTGTGATTTGTAATATTGAGACATTGGCATTAGTTAGCGCTATGTTAAATGGTAAGTTTCCTGTTATTAGGTCTGATATACATGTTATTATTACATCTTGTTTCGTGACTATGACCATTTTATATCATGTTTGTTTTATGACATGAAGAATGTACTTTGGGTCTTTAAAAATTGTACGTTTGTGTAAAACTAGTTGTTATATGGCAATATCGTCCAGGGATGATTATTTCTGGAATTCTGTTAGCTGTAAAGTTGCTAACTTCTTCATAGAGTTATTTTGGAAATCGTAGAACTACAGTGTTTACTATTTTTTTTTAACCACTATAATGCATCCTGCTACAAAATGAGATCTTTTCTTACAGTGACTGCGTCATTCGTTTTGTCTTCTCAGCTCCAGTGTAAGCTGTGTTGGTTTTAATTGGATCATCTTTAATGTGACAGGCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAA</genome_strand>
        <mrna_strand>TTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267335" ref_strand="+" ref_description="SGN-E267335 [cLEI-17-A11]">
      <seq>cccccgggctngaggaaaatccttaggtggggacaattctatatcgttgcgacttgccggatctgggcattccctgaaggaagctgcggaacatgctgcttcatcccacccttccgtttctcaggtccttattgctgattctgacaaatttacataccctttggctgaaccatgggccaaattagtccatcttgttcagcagagtggtggctattcacacataattgctgcatcaggttcatttgggaaaaatatattaccgcgtgcagcagctcttctggatatttctccaattactgatgtcacaaagatttctggatcaaacctctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="120731" stop="122491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121018" g_stop="121141" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121983" g_stop="122191" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="333" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E267335" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121018" e_stop="121141"/>
          <exon e_start="121983" e_stop="122191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTTTTGGAGAAAGTGGTATAGAACCTATTTGTTTGGATTTTCTCCACATAAGATACACAGATATCATATGAATGTGTGTCTATTAACAGGAAAAGTAGTCCATAGCTCATGCTGACAATACAATGCTGCTCCTTTCCTCTTCATCTTCAATTAAGCTATTGTGAGGACCAAGCACGCTACCTGTTATGAGTCTTTGTTCAAAGATTTTATGATTTTCATTCCAATGCTTCCATGTGATGTGACATGCTAGTTGACAATTTGAAATTAACTTAATTCAAGCATTCTGCACTTAGCATTTTGAGACAAATAATCTGTAACTAGCATTTAGAATAGATAAAGCAGTCAGCACACAAGAGAAAAAGATGCTGGAGCGAATGAAACTCACTATTTTCTTATTGTTTTTTATTTCTTCTTTAGGTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTAT</genome_strand>
        <mrna_strand>CCCCCGGGCTNGAGGAAAATCCTTAGGTGGGGACAATTCTATATCGTTGCGACTTGCCGGATCTGGGCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542690" ref_strand="+" ref_description="SGN-E542690 [TUS-64-B23](-)">
      <seq>cttggatgaagatgagtcagttgctaagtcgacatatgtaaagctttccgcgcaaatttcggagcgcccagatcttggaaatgcacgtattgtagtaactggtggacgaggtgtaaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcaggttttccctctcccgtgacttctgctgtattcaccttgtgcttttttctgctacttctttatcctttatcaatctctccttaacatatttcaaattcttagcaataacttgcataattctgatttcaatctgctttgatttgatcattaaactggattacctctgttctgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgtaaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaagatgaagatgatgtatgtggtggatgacatttgttatccaggaataatataatactaatatcattcattatttcaattctccaaccttattcacagaaaaaaaaagaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="122753" stop="124938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122898" g_stop="122908" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150">
            <donor d_prob="0.021" d_score="0.00"/>
            <acceptor a_prob="0.203" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123059" g_stop="123446" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="399" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123766" g_stop="123906" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="540" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124432" g_stop="124637" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="746" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="747" polyA_stop="765"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E542690" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122898" e_stop="122908"/>
          <exon e_start="123059" e_stop="123446"/>
          <exon e_start="123766" e_stop="123906"/>
          <exon e_start="124432" e_stop="124637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATGAAGGTCAGTCAGTTGTGATATGAACCCATATCTCCCGTGGATAACCAGATGTGTCTCTTTATGCCAATCTTGTCGATAAACGTCAGTTGTTTGCATCTTTTGTAAATAAACGTCAGTTGGTTAGAACCTAAAATGAGGTAGCTTTTTTTACAGATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAGAC</genome_strand>
        <mrna_strand>CTTGGATGAAG......................................................................................................................................................ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378878" ref_strand="+" ref_description="SGN-E378878 [TUS-3-J3](-)">
      <seq>taaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgtaaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaggatgaagatgatgtatgttttggatgacatatgtatccaggaataatataatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="122861" stop="124895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123161" g_stop="123220" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123221" i_stop="123393" i_length="173">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123394" g_stop="123446" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="113" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123766" g_stop="123906" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="254" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124432" g_stop="124595" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E378878" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123161" e_stop="123220"/>
          <exon e_start="123394" e_stop="123446"/>
          <exon e_start="123766" e_stop="123906"/>
          <exon e_start="124432" e_stop="124595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACT</genome_strand>
        <mrna_strand>TAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG.............................................................................................................................................................................TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAGGATGAAGATGATGTATGTTTTGGATGACATATG-TATCCAGGAATAATATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208552" ref_strand="+" ref_description="SGN-E208552 [cLEC-39-B2]">
      <seq>aaagagtgctgagaacttcaaaatgatagataagcttgcagagaaaatcggtgccgcagttggtgccactcgtgctgcagtggatgctggatttgttcccaacgatctccaggttggccaaactgggaaaattgttgccccagaattgtatatggcatttggtgtttctggtgcaattcaacacatagcaggcatgagagattccaagatcattgttgctgttaataaagatgcagatgcccccatattccaggttgctgattatggactcgtgggtgatctcttcgatgtcattccggagttgttagagaaacttcctgagaaaaagtagaaaatacacaggtctctgtgatccaataaagatgaagatgatgtatgtggtggatgacatttgttatccaggaataatataatactaatatcattcattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="122862" stop="124911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123162" g_stop="123220" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123221" i_stop="123393" i_length="173">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123394" g_stop="123446" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="112" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123766" g_stop="123906" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="253" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124432" g_stop="124611" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="433" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E208552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123162" e_stop="123220"/>
          <exon e_start="123394" e_stop="123446"/>
          <exon e_start="123766" e_stop="123906"/>
          <exon e_start="124432" e_stop="124611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAGGTAAGACTAGACATACTTGTTGCTTCAGGTGACTCAGTTACTTGCCTTCAGAAAAGTTGAATGGATTTTCACTTACGTAAACTGTAGTAACCTGTTACCTGTAATATCTTTTCTTTCATCTAAGCAAGTTATATCTATGGTATAACAAGTCAGACACAAAAAAATTGTGAAGTAAAATACTTGAAATGGTATTGAAGTAGTAGTGTCTGTCTCTCTGAAATTTTGTTTTCAAGAAACTGGAACTATAATGCAGCCCTGCCATTTTTCATGTTTGTCAGTTTTTTTGAATGTAGTTTTTGTTTTTCCTTCTCTATTTTAGGTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAGGTAAGGGTCAATCTTTCTATTCTCTCTCATGTCCTTTTCTCGCTCTTATGTTAATTCACATAATCAAGAGGGAGGGTGATGGAGACACAAACTCATTGGTTTACTTTTGATGGAGTTCTGATTTATCAATTACATTTCCGATAAGTAAAATAATTTATTTATTATCAGTTATCAGGAAGTAAAACAGAACATATTTCTTTGAAATTTTGGAGCAACTTAAGAAGTTGACGTAGTGAACATGCGGCATGTCACATGCCATCCAATTTTACCTCAGCTAGAAATGGAAATTAATAACCCTCATCTCACCTAGTTATTTATGTTAGAGTGAGTTAGAGTCCCACGTTGGTTAGTGAGCAGATTGGTGTCTCCTTATAGGGATGCAAGCAACTTCTCCCTTCATGACCTACATTTTGGGATTAAGTTAGCCTCAAATGCCATCTTACATGGTATGAGAGTTAAGTCGTCCCGCTCTAGAAGTTGACATATGGAATCCATATTGAAAACGTTGCTTTCATTGAACTGCAGGTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATT</genome_strand>
        <mrna_strand>AAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG.............................................................................................................................................................................TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG...............................................................................................................................................................................................................................................................................................................................GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTTAATAAAGATGCAGATGCCCCCATATTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544467" ref_strand="+" ref_description="SGN-E544467 [TUS-66-N2](-)">
      <seq>ggaagttgtgattcatgctgtggaagctggctttgggccacaaatgacagctaaaaagatagcagcattggcacagcaaagagcaatggacacaactaagccgtcacctttctctgatgcagccaaagaggccggatttgagtaccaaggggggaaacttgatgacataactgtagttgtttcttatgtaactaacaatgccaatccattggcaaattgagccacaaactttaatgtttttgaagtaggactgtgactagcaattcgcctagtgatgcctccttgatccgtcaagtgttttagttaatagatttacagtacggaggcatgtctatatgttgtatacgatgacctaattgatacattgttcttgttgacattgatggatacaaagacactgttcttgaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="125594" stop="90242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125294" g_stop="124885" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124884" i_stop="124812" i_length="73">
            <donor d_prob="0.782" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124811" g_stop="124781" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="440" r_length="31" r_score="0.581"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E544467" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125294" e_stop="124885"/>
          <exon e_start="124811" e_stop="124781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTGTGATTCATGCTGTGGAAGCTGGCTTTGGGCCACAAATGACAGCTAAAAAGATAGCAGCATTGGCACAGCAAAGAGCAATGGACACAACTAAGCCGTCACCTTTCTCTGATGCAGCCAAAGAGGCCGGATTTGAGTACCAAGGGGGGAAACTTGATGACATAACTGTAGTTGTTTCTTATGTAACTAACAATGCCAATCCATTGGCAAATTGAGCCACAAACTTTAATGTTTTTGAAGTAGGACTGTGACTAGCAATTCGCCTAGTGATGCCTCCTTGATCCGTCAAGTGTTTTAGTTAATAGATTTACAGTACGGAGGCATGTCTATATGTTGTATACGATGACCTAATTGATACATTGTTCTTGTTGACATTGATGGATACAAAGACACTGTTCTTTGAAAGTAATGTTTCTGTCTGTAGTTCTGTTTTGTAAGCCAAGTGGGCTTTGTTATGATTTCTAAAAAGCCATAGTTTATAAAAAAAAAAAATAGTAGAAAAAGAATTT</genome_strand>
        <mrna_strand>GGAAGTTGTGATTCATGCTGTGGAAGCTGGCTTTGGGCCACAAATGACAGCTAAAAAGATAGCAGCATTGGCACAGCAAAGAGCAATGGACACAACTAAGCCGTCACCTTTCTCTGATGCAGCCAAAGAGGCCGGATTTGAGTACCAAGGGGGGAAACTTGATGACATAACTGTAGTTGTTTCTTATGTAACTAACAATGCCAATCCATTGGCAAATTGAGCCACAAACTTTAATGTTTTTGAAGTAGGACTGTGACTAGCAATTCGCCTAGTGATGCCTCCTTGATCCGTCAAGTGTTTTAGTTAATAGATTTACAGTACGGAGGCATGTCTATATGTTGTATACGATGACCTAATTGATACATTGTTCTTGTTGACATTGATGGATACAAAGACACTGTTC-TTGAAA.........................................................................AAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544468" ref_strand="+" ref_description="SGN-E544468 [TUS-66-N2]">
      <seq>ggaagttcctctgtgttcttgcacccaaaagtaaacaaaacggaaaagttgtccgccgtcaacgaaaatattttcaggctttacctcctgaactacttgcagcaagcagagtttctctcgttattgattgttacagcggataatggctgtttgtggttcaagaacttctcatattggccattttgttggtaagatggctgctaggcgcctgcattatgcattggcggtaaataatagtagcgtctcttatagcaataggagcattgagaatgttagaaaagccaacattagtttgagaaataaaggccaacctcacaacttcatgttatctcaatattttaaaactagtgttgcaaagaggaagggacatgaaggatttggattagaaggttttcgcgttttatcacttgcacgtttctcttctggaactactgctcccagcagcctgtcttctgataatactaaggaaaaggaacagactgcagatactgttgattcttctgagggaaagatacacctgaagctgaattcgggatcattttatctgcctcatcctgcgaaagcaaaaactggtggagaggatgctcatttcatttatgatcctgcacaagctataggtgtagctgatggggtcggtggatgggctgatcttggtattgatggcaggggaatatgcccgtgaattaatgtctaactgtatgtctgtgatacaagaggaacctaanggattcgtagaccttattagggtcctggagaaagcttacatgagaacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127662" stop="125275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127362" g_stop="127286" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127285" i_stop="126274" i_length="1012">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126273" g_stop="125575" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="777" r_length="700" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E544468" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127362" e_stop="127286"/>
          <exon e_start="126273" e_stop="125575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAGGTAAATTTTTTCATTAAATCTGTTCCTTGTTAGGATAATAATAAGGATAAATATGACATTTTTAATCCTAATATATTTTTCTGCTTCTTGAGTCAATAGCCTTGCATTGAGTTTGGAATATTTTGATGTTACCTTTGAGTTTTTTTTTGTCAAATAAATTTAAGATATAATTTGTATATTTGTCACTTTTTTAGCTGTTTATCAACTTCTTAAGATTGTCTGTTAATTAGAATTTATCTATTCTAATATGTTCTTTTGCGCAAGAAACTAGATTCGATGAAACTCAATAACTTTACTTCGAACAGTGTATTTGAATGAAGAAGTTTATTGAATATGTATTCAAGTATTTGATTTAGAACCTGGACATTGTTCTTATATTCCGAACTCATAGAGTTAAAATTTTGGTTCCACCTCAGCACAAGATGGTCCTTGTGCAAAGGAGGATCCATAGTCAAATATTGGTAGATTTCTAATGAACTTTTTAATTACTCCCTTCTTCTCAATTTTGTATGAGTTAGTTCGTTTTGATGCGGAGTTTTAAGATAAAAGAAAGGGTTTTTGAAACTTATGGTCTAAAATAAGTCAGTGCCAAGAAATCATTTCATTAAGGATAAAATGGACACGTTAAAATTAAATTGTTACTAAATGTAGACATTCTTTTCGGGAGTGGTTAAAAAGGAAAGTAAATCATATAAAGTGGGACAAGAGGGAGTAATACATTTACAAGGTATGCTTGAAAGTTACTTCGTTCACGTGAACCATTGCTCCTGTCTCTACACTATGGACTACTTGCTTGTAAGAAGTTATGTTGTTACATTGTTTTCCTTGGTGTAATGGGAATGGGGGAGGTTTTGGGATTAACTGAGAGGGAGATATTGCGAGTTTGAATCATGATGTTTACTCTACTTTATATATTCATGCGTTATCTAGTGTGTTTCGAAAGGGAAAAACAAAGAAACTGTGTTAGATGATGAGAACGTGTAAGGTTTTTATGAGGTGATTGTGTTTGCAGGCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGAT-GCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAAGGATTCCGTAGACCTTATTAGGGTCCTGGAGAAAGCTTACATGAGAACAAAAG</genome_strand>
        <mrna_strand>GGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGATGGCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAANGGATTCGTAGACCTTATTAGGGTCCTGGAGAAAGCTTACATGAGAACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307079" ref_strand="+" ref_description="SGN-E307079 [cLEY-15-D13]">
      <seq>gaagttcctctgtgttcttgcacccaaaagtgaacaaaagggaaaagttgtccgccgtcaacgaaaatattttcaggctttacctcctgaactacttgcagcaagcagagtttctctcgttattgattgttacagcggataatggctgtttgtggttcaagaacttctcatattggccattttgttggtaagatggctgctaggcgcctgcattatgcattggcggtaaataatagtagcgtctcttatagcaataggagcattgagaatgttagaaaagccaacattagtttgagaaataaaggccaacctcacaacttcatgttatctcaatattttaaaactagtgttgcaaagaggaagggacatgaaggatttggattagaaggttttcgcgttttatcacttgcacgtttctcttctggaactactgctcccagcagcctgtcttctgataatactaaggaaaaggaacagactgcagatactgttgattcttctgagggaaagatacacctgaagctgaattccggatcattttatctgcctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127661" stop="125498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127361" g_stop="127286" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127285" i_stop="126274" i_length="1012">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126273" g_stop="125798" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="552" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E307079" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127361" e_stop="127286"/>
          <exon e_start="126273" e_stop="125798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAGGTAAATTTTTTCATTAAATCTGTTCCTTGTTAGGATAATAATAAGGATAAATATGACATTTTTAATCCTAATATATTTTTCTGCTTCTTGAGTCAATAGCCTTGCATTGAGTTTGGAATATTTTGATGTTACCTTTGAGTTTTTTTTTGTCAAATAAATTTAAGATATAATTTGTATATTTGTCACTTTTTTAGCTGTTTATCAACTTCTTAAGATTGTCTGTTAATTAGAATTTATCTATTCTAATATGTTCTTTTGCGCAAGAAACTAGATTCGATGAAACTCAATAACTTTACTTCGAACAGTGTATTTGAATGAAGAAGTTTATTGAATATGTATTCAAGTATTTGATTTAGAACCTGGACATTGTTCTTATATTCCGAACTCATAGAGTTAAAATTTTGGTTCCACCTCAGCACAAGATGGTCCTTGTGCAAAGGAGGATCCATAGTCAAATATTGGTAGATTTCTAATGAACTTTTTAATTACTCCCTTCTTCTCAATTTTGTATGAGTTAGTTCGTTTTGATGCGGAGTTTTAAGATAAAAGAAAGGGTTTTTGAAACTTATGGTCTAAAATAAGTCAGTGCCAAGAAATCATTTCATTAAGGATAAAATGGACACGTTAAAATTAAATTGTTACTAAATGTAGACATTCTTTTCGGGAGTGGTTAAAAAGGAAAGTAAATCATATAAAGTGGGACAAGAGGGAGTAATACATTTACAAGGTATGCTTGAAAGTTACTTCGTTCACGTGAACCATTGCTCCTGTCTCTACACTATGGACTACTTGCTTGTAAGAAGTTATGTTGTTACATTGTTTTCCTTGGTGTAATGGGAATGGGGGAGGTTTTGGGATTAACTGAGAGGGAGATATTGCGAGTTTGAATCATGATGTTTACTCTACTTTATATATTCATGCGTTATCTAGTGTGTTTCGAAAGGGAAAAACAAAGAAACTGTGTTAGATGATGAGAACGTGTAAGGTTTTTATGAGGTGATTGTGTTTGCAGGCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCAT</genome_strand>
        <mrna_strand>GAAGTTCCTCTGTGTTCTTGCACCCAAAAGTGAACAAAAGGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCCGGATCATTTTATCTGCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345280" ref_strand="+" ref_description="SGN-E345280 [cTOF-13-P13]">
      <seq>aaaagtgttttaataattggcttacagctgatgtgaagtaagaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattanggagaagtgttacctttangtttcctacactgccgttcatccctaangagccttatgatgtaattgcaactgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127550" stop="130622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127850" g_stop="127971" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="246" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="480" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130322" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="723" r_length="243" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E345280" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127850" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGTTTTAATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACC-TTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTA</genome_strand>
        <mrna_strand>AAAAGTGTTTTAATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTANGGAGAAGTGTTACCTTTANGTTTCCTACACTGCCGTTCATCCCTAANGAGCCTTATGATGTAATTGCAACTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727811" ref_strand="+" ref_description="SGN-E727811 [LA15DC05]">
      <seq>ctgatgtgaagtaagaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccaggaccagaatttatcgacaggtacaagaactacttagcaagtttcggatatgatccaagcaaaatcaatgacactccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127577" stop="131702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127877" g_stop="127971" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="219" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="453" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130371" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="744" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131299" g_stop="131402" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="848" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E727811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127877" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130371"/>
          <exon e_start="131299" e_stop="131402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACA</genome_strand>
        <mrna_strand>CTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729696" ref_strand="+" ref_description="SGN-E729696 [LA21DC10]">
      <seq>gtgaagtaagaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccangaccagaatttatcgacaggtacaagaactacttagcaagttccggatatgatccaagcaaaatcaatgaccctccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127582" stop="131701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127882" g_stop="127971" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="214" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="448" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130371" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="739" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131299" g_stop="131401" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="842" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E729696" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127882" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130371"/>
          <exon e_start="131299" e_stop="131401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCAC</genome_strand>
        <mrna_strand>GTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCANGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTCCGGATATGATCCAAGCAAAATCAATGACCCTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240606" ref_strand="+" ref_description="SGN-E240606 [cLED-21-J21]">
      <seq>tttaagaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127588" stop="130193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127886" g_stop="127971" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="210" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129893" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="403" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E240606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127886" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTG</genome_strand>
        <mrna_strand>TTTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240664" ref_strand="+" ref_description="SGN-E240664 [cLED-21-I21]">
      <seq>agaacacaatggtttgctacaatttggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127590" stop="130407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127890" g_stop="127971" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="206" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="440" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130107" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="467" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E240664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127890" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCA</genome_strand>
        <mrna_strand>AGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283248" ref_strand="+" ref_description="SGN-E283248 [cLER-17-P20]">
      <seq>tttgctacaatttggtggccgaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127602" stop="130459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127902" g_stop="127971" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="194" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="428" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130159" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="507" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E283248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127902" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACA</genome_strand>
        <mrna_strand>TTTGCTACAATTTGGTGGCCGAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345661" ref_strand="+" ref_description="SGN-E345661 [cTOF-18-O20]">
      <seq>tttggtgggccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagatgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacatttttgcgttcatggaggacctgatggctacatcacaggcataagggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattngggagaaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127612" stop="130631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127912" g_stop="127971" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="184" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="418" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130331" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="672" r_length="254" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E345661" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127912" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACA-TTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAA-GGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGA-AGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTT</genome_strand>
        <mrna_strand>TTTGGTGGGCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGATGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTNGGGAGAAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703104" ref_strand="+" ref_description="SGN-E703104 [FA20CC08]">
      <seq>tggtggcccaacaatcacctccaattttggttcaatcacaatatccgtcaaaacccagggggttgtctgtgaaagtggtgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccaggaccagaatttatcgacaggtacaagaactacttagcaagtttcggatatgatcccagcaaaatcaatgacactccacaagactgtgaggtaaagactaccagtcagctatcagcaatgatgtccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="127614" stop="131750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127914" g_stop="127971" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129363" g_stop="129486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="182" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="416" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="130081" g_stop="130371" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="707" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="131299" g_stop="131450" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="859" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E703104" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127914" e_stop="127971"/>
          <exon e_start="129363" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130371"/>
          <exon e_start="131299" e_stop="131450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAGGTATAATCTCACTCTTTTTTTTTTGCTTATATTCTCAAATCTCAACAATTATATTCTCTAAATTGTACTGCTGTGATCTGTTAAAAATAGTACCCTTTATGGTTGTGATTGTTCAGAATTAAATAAAAATTGTACTAAAACCAGACCAATGAAAATGAAAGCTGCAATTCCAAATCTTTAAGCTAAAATGCCATAACCAAGGGAAGAATGTCAGATTTTAGTGAGTCAGTTTGAACTTTTTTATTTAGGTTTACAATAATTAATAGTCTTTTTGACCAAGTATATAAAATGTTCTTGTTTGGAGAAGTGCTTTCCCAAAAAAAGTATAGCAATTTGTGTTTGATTAATCAGTTTTGCTTGATGTTTGAATAGTTGTTTGTGTAAGCTACTACTCAAACACTTATTTTTGCCTAAAGTCGATATCAAATACCTAACTTTGATAAAATAAGCACTTTTAGCTACCCATATAAGCCTCAGTCTCAACCAAGTTGGAGTCGATTATATAAATCCCAAACCTGATCATGTTTCTCCATTTAAACTCTGATACTAAACAACAACCTTTTATTTTTATTAGTTTCTCAAAGTATAAATTTTGTTGTTTCTTTTGATACCATTTTGTGGACATCGGGATGCATACGAAATGAGTGAATAGCTCATCTGCTAATCAATGTTAATACTTGGAAAAATGCATATTCTTCTTAACGAACAATCTAAGTCTTCCTATATCAGCCACTTTCTAAGTAAATATTATTTGTCCATTTAGTCAATCCCATTATCTGATTGGCTAACTAGTAAGGATGACACGAGAATGGCCATTAGATTACATTCTCAAATCTCAAGTGTATTAATAGCAATAATTTATCATAATGAGGTCTTCTTAGAGTCAAAAGGAATATTGAAAGTTGCTTGATCATCATACAAGTACCCATGGTCATGTGCCTACTGGTCAATGAAGTGGGTTGAGAACCATGAGGTCTCAAGTTCAAATTCATCTTAGACAAATATACTAGCTGATTCTTCCCTAGTGGAAAGAGCTATCCGGTACCTGTCCTGGTGGAGGAGTAGGTACCCGTGGAAATTAGTCCTATTTCAGTACACGAAAATTCCTCCTTTAATTGGAATTACACCTCTGAATAGGAAGTACATCCAATAGGATATTTCCTTGTCTGATACCTTTTGGTGTGTTTGAGGTGTAGTCTGACAAAAGACATTGCTTGTTTACTTTTCTTTCCTGCAGCAATAGATAACCTAAACTGTCCAAGCAGTGTAATGCATCCAGCTTAGTTTTACGTATTATATTTTATGTGGCTGATGTTTTCTCAAAGATTCTTTTTTCCTTCCAAAACATTCCCATTCTTCATGTAATGAGGATTTTTCGTCGGTCCTTGTAGGGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCAT</genome_strand>
        <mrna_strand>TGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCCAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235868" ref_strand="+" ref_description="SGN-E235868 [cLED-16-A3]">
      <seq>tgtcttcctgctgcactgaatgtccaatatttggtaaggttgaggttaaacatgtcatttctggtcttgcggcatcaatcctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="129083" stop="130463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129383" g_stop="129486" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="338" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130081" g_stop="130163" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="421" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E235868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129383" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCAC</genome_strand>
        <mrna_strand>TGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321642" ref_strand="+" ref_description="SGN-E321642 [cTOB-25-P19]">
      <seq>ctatttctctctcaaagtagcatggcttttgcagcagacctccctcattacaacagtgtatttcaacttgcaaatgtcgcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccaggaccagaatttatcgacaggtacaagaactacttagcaagtttcggatatgatccaagcaaaatcaatgacactccacaagactgtgaggtaaagactaccagtcagctatcagcaatgatgtccatgtcccggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="129163" stop="131761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129463" g_stop="129486" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129701" g_stop="129934" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="258" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130081" g_stop="130371" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="549" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="131299" g_stop="131461" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="712" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E321642" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129463" e_stop="129486"/>
          <exon e_start="129701" e_stop="129934"/>
          <exon e_start="130081" e_stop="130371"/>
          <exon e_start="131299" e_stop="131461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCTCTCTCAAAGTAGCATGGTTAGTATCCTTACTATATTTTCTCTCCTAATTCCAGAGGCAAAAGTGGTACTGCACATATGTATTTGGTTGATTTGATAGAATAGTTGTGAAAGCTGAAGGTCCGGAATGATGCTTTCATGACTTTTGGGAATGCATTCTGTACGAATTAACTTAAAGAAAAAATTTCAGAAATTTTGTTAAACTTTCAAGCGTATCTTCTTTCTATTGGTAGGCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGC</genome_strand>
        <mrna_strand>CTATTTCTCTCTCAAAGTAGCATG......................................................................................................................................................................................................................GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCCGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281180" ref_strand="+" ref_description="SGN-E281180 [cLER-7-L12]">
      <seq>gcggacagcatgccaacacttcctttggagaagggaaatgatggtggaaagctgatgatgatgcgaggcatgacagcgaaagactttgatccaatcaggtattctggaagatggttcgaagtagcttcccttaaacgtggatttgctggacaaggtcaagaagattgtcattgcacacagggcatttacactgttgatatgaatgcacctgctatccaagtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="129455" stop="131619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129755" g_stop="129934" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130081" g_stop="130371" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="471" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131299" g_stop="131319" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="492" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E281180" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129755" e_stop="129934"/>
          <exon e_start="130081" e_stop="130371"/>
          <exon e_start="131299" e_stop="131319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAGGTTGAATGTTGAGAATGTTAACACCTGAAAAATCACGCCTTCTGTTTTCTGTCTTTTGAAGATATTTTGGGTTACTTGACTCTCGGACACATATACTTGAAGATGTCTTTTTTGGCATAATCTGTCTTTATTCCAAATTATTTCAGGGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAAT</genome_strand>
        <mrna_strand>GCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG..................................................................................................................................................GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552134" ref_strand="+" ref_description="SGN-E552134 [cTSB-2-P12]">
      <seq>agtagacacattttgcgttcatggaggacctgatggctacatcacaggcataaggggaagggttcaatgccttaatgaggaggataaggagaaagacgagactgatctagaaaggcaagaaatgattagggagaagtgttaccttaggtttcctacactgccgttcatccctaaggagccttatgatgtaattgcaactgattatgataacttcgcactggtttctggagctaaagataaaagcttcgttcagatatactcgaggacgcctaatccaggaccagaatttatcgacaggtacaagaactacttagcaagtttcggatatgatccaagcaaaatcaatgacactccacaagactgtgaggtaaagactaccagtcagctatcagcaatgatgtccatgtccggaatgcaacaagctctaaacaaccaatttcctgatttagagttgagacgccctgttcaattcaacccattcacaagcgttttcgaaactctcaagaaacttgctgaactatatttcaagtagtaaatccacttgatatattacttgtatagtgcatagttcttatgactagtggctgtaacacattgaactaaagttcaactatgaatgacatacactccagaaaaatttgtgtgttactattgggaaaaaaaaaaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="129819" stop="132005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130119" g_stop="130371" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131299" g_stop="131704" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="659" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="678"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E552134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130119" e_stop="130371"/>
          <exon e_start="131299" e_stop="131704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAGGTAATTAATTCTTTCAGTTTAAACCAGTGTGACTTTTAGTACTGTACAAAATGTGGGTGGGTTTCTTACATATCAAATGTTTATTGCTGTCACACCTTTAAATTAATGAAATATCCCAACTAAGCAATACCATAATAGGGAGCTGTTAAAGAAGTCCCACATCCGTCAATTATGGGATACATGGTCTCTTTATATGGCCCGGGCAATCCTCACCTCTTGAGCTAGTTTTTGTCGTTGAGTTAGGCTCGAGATCCATTTCTTTACTTGAGCAAATTAGAAAAAAAAACTTTTCCTTTGTACGAAGGCATGGATACAGACACTCCCCTCAGACCTAATATCGGGTCCATTTTCTAAGTATCAAGACTTAGTATGTGAGGATGTTTTAGATAGCATTAGCATAGCCTACAGCTTAAGTAAAAGGGGTACATTGTAGATACATTTTGTAATTACGGATATATGATGTGAACTAGGATTGTTGAATACTTTTGTTGATGTTAGTGCTTGCAGGAGCGGATCTAGTGTACTGTTCATATATGGGTTCATCCAAACCCAGTAGATTTGGCTCGTACCCTGTATATATGTTAAGATGTGCACTAAATAAGTACAGATGATAGATATCAGATCCAACAAATCAAATATTTATGGTATGATCCCAAACTCGAACCTGTAATGTTCAAATCCTGGTTCCGCCTTTGAGTGTTTGAATGTCTAGTATTGTTGTAAGAATGCTGGAAGAGGCATTTGTGATTATAAAAGAAACTTGGCATGATATAGGTTATAACACAGCATAAATCTATATCTAATTCACTTGAACATTACACAAGAAGAAACATCAATTACAACTCTCAAAATTGCTGGAATTTACTTATAGTACATGATTTATCCGACTGACTAACTGATTATGCCTTTTTTCTCTCCTCAAATCAGATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAA</genome_strand>
        <mrna_strand>AGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265203" ref_strand="+" ref_description="SGN-E265203 [cLEI-2-L5]">
      <seq>ttttttaaaactcataccatatataagcatgtcattcacatatgtgtaccattttcccaatagtaacacacaaatttttctggagtgtatgtcattcatagtcgaactttagttcaatgtgttacagcctctagtcataagaactatgctctattcaagtaatatatcaagtggatttactacttgaaatttagttcatcaagtttcttgagagtttcgaaaacgcttgtgaatgggttgaattgaacagggcgtctcaactctaaatcaggaaattggttgtttaaagcttgttgcattccggacatggacatcattgctgatagctgactggtagtctttacctcacagtcttgtggagagtcattgattttgcttggatcatatccgaaacttgctaagtagttggtgcacctgtcgataaattctggtcctggattatgcgtcctcgagtatatctgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="-" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="132055" stop="130995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131756" g_stop="131292" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="-" ref_id="SGN-E265203" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131756" e_stop="131292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTAAACTCATACCAAATATAAGCATGTCATTCACATATGTCTACCATTTTCCCAATAGTAACACACAAATTTTTCTGGAGTGTATGTCATTCATAGTTGAACTTTAGTTCAATGTGTTACAGCCACTAGTCATAAGAACTATGCACTATACAAGTAATATATCAAGTGGATTTACTACTTGAAATATAGTTCAGCAAGTTTCTTGAGAGTTTCGAAAACGCTTGTGAATGGGTTGAATTGAACAGGGCGTCTCAACTCTAAATCAGGAAATTGGTTGTTTAGAGCTTGTTGCATTCCGGACATGGACATCATTGCTGATAGCTGACTGGTAGTCTTTACCTCACAGTCTTGTGGAGTGTCATTGATTTTGCTTGGATCATATCCGAAACTTGCTAAGTAGTTCTTGTACCTGTCGATAAATTCTGGTCCTGGATTAGGCGTCCTCGAGTATATCTGATTT</genome_strand>
        <mrna_strand>TTTTTTAAAACTCATACCATATATAAGCATGTCATTCACATATGTGTACCATTTTCCCAATAGTAACACACAAATTTTTCTGGAGTGTATGTCATTCATAGTCGAACTTTAGTTCAATGTGTTACAGCCTCTAGTCATAAGAACTATGCTCTATTCAAGTAATATATCAAGTGGATTTACTACTTGAAATTTAGTTCATCAAGTTTCTTGAGAGTTTCGAAAACGCTTGTGAATGGGTTGAATTGAACAGGGCGTCTCAACTCTAAATCAGGAAATTGGTTGTTTAAAGCTTGTTGCATTCCGGACATGGACATCATTGCTGATAGCTGACTGGTAGTCTTTACCTCACAGTCTTGTGGAGAGTCATTGATTTTGCTTGGATCATATCCGAAACTTGCTAAGTAGTTGGTGCACCTGTCGATAAATTCTGGTCCTGGATTATGCGTCCTCGAGTATATCTGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226272" ref_strand="+" ref_description="SGN-E226272 [cLEL-31-O13](-)">
      <seq>aagtttcggatatgatccaagcaaaatcaatgacactccacaagactgtgaggtaaagactaccagtcagctatcagcaatgatgtccatgtccggaatgcaacaagctctaaacaaccaatttcctgatttagagttgagacgccctgttcaattcaacccattcacaagcgttttcgaaactctcaagaaacttgctgaactatatttcaagtagtaaatccacttgatatattacttgtatagtgcatagttcttatgactagtggctgtaacacattgaactaaagttcaactatgaatgacatacactccagcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0221M09-sK512/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0221M09.1" temp_strand="+" temp_description="C12HBa0221M09.1  AC216293.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0221M09 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="131061" stop="131982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131361" g_stop="131681" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="322" polyA_stop="334"/>
      <MATCH_line gen_id="C12HBa0221M09.1" gen_strand="+" ref_id="SGN-E226272" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0221M09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131361" e_stop="131681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAA</genome_strand>
        <mrna_strand>AAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>346</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5575" PGL_stop="9055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5575" e_stop="6323"/>
            <exon e_start="6932" e_stop="7025"/>
            <exon e_start="7104" e_stop="7137"/>
            <exon e_start="7237" e_stop="7291"/>
            <exon e_start="8084" e_stop="8167"/>
            <exon e_start="8249" e_stop="8536"/>
            <exon e_start="8643" e_stop="9055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.440" e_score="0.999"/>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="5575" e_stop="6323" e_length="749"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.440">
            <gDNA_intron_boundary i_start="6324" i_stop="6931" i_length="608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6932" e_stop="7025" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7104" e_stop="7137" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7237" e_stop="7291" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8084" e_stop="8167" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8249" e_stop="8536" e_length="288"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="8643" e_stop="9055" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5575" stop="6323"/>
              <exon start="6932" stop="6991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5575" stop="5789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5656" stop="6171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5656" stop="6165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5659" stop="6265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5722" stop="6287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5722" stop="6263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5722" stop="6005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5779" stop="6323"/>
              <exon start="6932" stop="7025"/>
              <exon start="7104" stop="7137"/>
              <exon start="7237" stop="7291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5779" stop="6300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5874" stop="6323"/>
              <exon start="6932" stop="6959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5963" stop="6323"/>
              <exon start="6932" stop="7025"/>
              <exon start="7104" stop="7137"/>
              <exon start="7237" stop="7291"/>
              <exon start="8084" stop="8133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5992" stop="6323"/>
              <exon start="6932" stop="7025"/>
              <exon start="7104" stop="7123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6214" stop="6323"/>
              <exon start="6932" stop="7025"/>
              <exon start="7104" stop="7137"/>
              <exon start="7237" stop="7291"/>
              <exon start="8084" stop="8167"/>
              <exon start="8249" stop="8536"/>
              <exon start="8643" stop="8744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7247" stop="7291"/>
              <exon start="8084" stop="8167"/>
              <exon start="8249" stop="8536"/>
              <exon start="8643" stop="9028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="8167"/>
              <exon start="8249" stop="8536"/>
              <exon start="8643" stop="9055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8339" stop="8536"/>
              <exon start="8643" stop="9052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG : GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG : GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG : AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATT</gDNA_template>
            <first_frame> K  Y  F  L  R  *  Q  S  N  K  K  E  L  I  F  L  L  I  Q  S  I  P  K  Q  S  V  K  M  N  E  P  N  L  N  F  K  L  *  K  F  S  N  L  F  Y  I  R  F  T  P  I  S  V  *  R  W  S  M  S  D  N  R  N  S  G  I  I  A  G  I  F  I  S  *  E  K  K  C  R  L  L  C  Q  H  Q  L  A  V  T  S  I  A  Q  E  E  E  D  L  Y  T  I  I  N  M  T  P  P  K  I  T  P  F  L  L  H  Q  L  N  H  F  V  F  Q  A  P  I  C  L  F  N  H  K  I  L  F  C  I  E  N  P  F  H  *  Y  P  E  D  S  F  C  V  Q  I  R  Q  L  P  L  L  L  M  V  M  T  T  R  I  K  A  L  G  I  G  S  K  V  L  G  K  R  F  L  F  C  F  P  C  G  *  L  W  V  A  *  L  G  C  L  N  L  A  R  T  I  G  S  N  L  N  G  L  *  W  A  L  H  S  L  C  L  V  W  E  *  L  L  L  S  M  T  F  V  V  L  *  R  C  L  K  S  C  S  A  D  S  S  F  S  I  R :   *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  *  M  Q  L  D  F  S  C  L  L  Y  R :   W  C  F  F  L  Y  *  L  V  H  F  *  I  S  I  S  K  A  *  S  K  S  C  L  H  *  C  H  L  L  L  *  Q  L  L  L  F  F  V  E  M  Q  L  H  R  V  L  L  Q  S  L  C  Q  D  N  R  L  S  *  L  L  L  F  F  M  R  L  A  S  S  L  A  M  Y  S  Q  G  C  L  E  L  I  C  P  P  Q  G  Q  Y  L  L  K  S  E  C  R :   T  R  F  L  E  *  F  *  P  L  S  T  L  V  I  H  L  L  Q  Y  H  V  P  F  L  V  F  A  I  R  Y  L  A  V  P  W  L  A  Y  G  G  V  L  F  Q  I  K  C  R  T  K  S  L  C  W  Q  F  Y  D  G  L  N  I  R  L  *  F  F  A  V  I  I  K  L  G  S  Q  *  I  R  R  S  F  Y  F  F  G  K  F  I  V  M  S  G  E  S  A  L  I  C  L  *  *  N  Q  F  Y  F  V  G  G  G  G  S  K  T  Y  K  H  L  D  H  W  Q  E  F  I  C  I  *  Y  L  I  L  V  L  Y  </first_frame>
            <second_frame>  N  I  S  F  D  N  N  Q  I  R  K  S  L  Y  F  C  *  F  N  Q  F  Q  N  K  V  S  R  *  M  S  P  I  *  I  L  N  C  K  N  F  Q  T  Y  S  T  S  A  S  P  R  L  A  Y  N  D  G  R  *  V  T  T  G  T  V  A  L  L  L  E  Y  S  S  A  R  R  K  N  A  G  S  C  V  S  T  N  *  L  L  H  Q  L  H  K  K  K  K  I  Y  T  Q  *  S  I  *  H  L  Q  R  L  P  L  F  F  F  T  N  *  I  T  L  F  F  K  H  P  F  A  F  S  I  T  K  S  C  S  V  S  K  T  H  F  I  N  I  Q  R  T  A  S  V  F  K  F  V  N  C  H  Y  C  *  W  *  *  Q  Q  E  *  K  L  W  G  L  D  P  K  C  W  G  N  D  F  C  F  V  S  L  V  G  S  F  G  L  L  D  W  A  A  *  T  *  L  V  Q  L  G  Q  T  S  M  D  C  D  G  H  Y  T  H  Y  A  W  Y  G  N  D  S  Y  F  R  *  P  S  W  C  F  S  D  A  *  R  A  V  L  R  I  H  P  S  V  F   : G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S  R  C  S  W  T  F  H  V  Y  F  T   : G  G  A  S  S  C  I  S  W  C  I  S  E  S  V  F  Q  R  P  S  Q  N  R  V  S  I  D  A  T  Y  C  C  S  N  C  C  C  S  L  W  K  C  N  C  T  E  F  F  C  N  P  Y  V  R  T  T  G  C  H  S  C  C  S  S  S  C  V  W  L  L  L  W  L  C  T  R  K  D  A  W  S  *  Y  V  L  L  K  D  N  I  Y  *  S  R  N  A   : E  L  G  S  W  S  S  S  S  H  S  A  L  W  *  S  T  Y  C  S  T  M  C  R  F  *  C  L  P  F  D  I  W  Q  C  L  G  W  H  M  E  A  F  Y  S  R  *  S  A  G  L  S  H  S  V  G  N  S  M  M  V  *  I  *  D  C  S  F  S  Q  *  S  S  S  L  V  V  S  E  F  G  D  L  F  I  F  L  G  S  S  *  *  C  L  A  N  Q  H  *  S  V  C  S  K  T  N  F  T  L  L  V  V  A  V  V  K  P  I  N  I  L  I  I  G  R  N  L  S  A  S  D  I  *  F  L  F  C  I </second_frame>
            <third_frame>   I  F  P  S  I  T  I  K  *  E  R  A  Y  I  F  V  N  S  I  N  S  K  T  K  C  Q  D  E  *  A  Q  F  K  F  *  I  V  K  I  F  K  L  I  L  H  P  L  H  P  D  *  R  I  T  M  V  D  E  *  Q  P  E  Q  W  H  Y  C  W  N  I  H  Q  L  G  E  K  M  Q  A  L  V  S  A  P  T  S  C  Y  I  N  C  T  R  R  R  R  F  I  H  N  N  Q  Y  D  T  S  K  D  Y  P  F  S  S  S  P  T  K  S  L  C  F  S  S  T  H  L  P  F  Q  S  Q  N  L  V  L  Y  R  K  P  I  S  L  I  S  R  G  Q  L  L  C  S  N  S  S  T  A  I  T  A  D  G  D  D  N  K  N  K  S  F  G  D  W  I  Q  S  V  G  E  T  I  S  V  L  F  P  L  W  V  A  L  G  C  L  I  G  L  L  K  P  S  S  Y  N  W  V  K  P  Q  W  T  V  M  G  I  T  L  T  M  L  G  M  G  M  T  L  T  F  D  D  L  R  G  A  L  A  M  P  K  E  L  F  C  G  F  I  L  Q  Y  S  :  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A  V  D  A  A  G  L  F  M  S  T  L  Q  :  V  V  L  L  P  V  L  A  G  A  F  L  N  Q  Y  F  K  G  L  V  K  I  V  S  P  L  M  P  P  I  A  V  A  T  V  A  V  L  C  G  N  A  I  A  Q  S  S  S  A  I  L  M  S  G  Q  Q  V  V  I  A  A  A  L  L  H  A  S  G  F  F  F  G  Y  V  L  A  R  M  L  G  V  D  M  S  S  S  R  T  I  S  I  E  V  G  M  Q  :  N  S  V  L  G  V  V  L  A  T  Q  H  F  G  N  P  L  T  A  V  P  C  A  V  S  S  V  C  H  S  I  F  G  S  A  L  A  G  I  W  R  R  S  I  P  D  K  V  Q  D  *  V  T  L  L  A  I  L  *  W  S  E  Y  K  I  V  V  F  R  S  D  H  Q  A  W  *  S  V  N  S  E  I  F  L  F  F  W  E  V  H  S  D  V  W  R  I  S  I  N  L  S  V  V  K  P  I  L  L  C  W  W  W  R  *  *  N  L  *  T  S  *  S  L  A  G  I  Y  L  H  L  I  S  N  S  C  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5754" stop="6323"/>
                    <exon start="6932" stop="7025"/>
                    <exon start="7104" stop="7137"/>
                    <exon start="7237" stop="7291"/>
                    <exon start="8084" stop="8167"/>
                    <exon start="8249" stop="8536"/>
                    <exon start="8643" stop="8795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPEQWHYCWNIHQLGEKMQALVSAPTSCYINCTRRRRFIHNNQYDTSKDYPFSSSPTKSLCFSSTHLPFQSQNLVLYRKPISLISRGQLLCSNSSTAITADGDDNKNKSFGDWIQSVGETISVLFPLWVALGCLIGLLKPSSYNWVKPQWTVMGITLTMLGMGMTLTFDDLRGALAMPKELFCGFILQYSVMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVAVDAAGLFMSTLQVVLLPVLAGAFLNQYFKGLVKIVSPLMPPIAVATVAVLCGNAIAQSSSAILMSGQQVVIAAALLHASGFFFGYVLARMLGVDMSSSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSIFGSALAGIWRRSIPDKVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6921" e_stop="7025"/>
            <exon e_start="7104" e_stop="7137"/>
            <exon e_start="7237" e_stop="7291"/>
            <exon e_start="8084" e_stop="8167"/>
            <exon e_start="8249" e_stop="8536"/>
            <exon e_start="8643" e_stop="9055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="0.952"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="6921" e_stop="7025" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="7026" i_stop="7103" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7104" e_stop="7137" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7138" i_stop="7236" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7237" e_stop="7291" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7292" i_stop="8083" i_length="792"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8084" e_stop="8167" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="8168" i_stop="8248" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8249" e_stop="8536" e_length="288"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8537" i_stop="8642" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="8643" e_stop="9055" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6921" stop="7025"/>
              <exon start="7104" stop="7137"/>
              <exon start="7237" stop="7291"/>
              <exon start="8084" stop="8167"/>
              <exon start="8249" stop="8536"/>
              <exon start="8643" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7247" stop="7291"/>
              <exon start="8084" stop="8167"/>
              <exon start="8249" stop="8536"/>
              <exon start="8643" stop="9028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="8167"/>
              <exon start="8249" stop="8536"/>
              <exon start="8643" stop="9055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8339" stop="8536"/>
              <exon start="8643" stop="9052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG : GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG : AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGTATT</gDNA_template>
            <first_frame> F  W  Y  R  *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  *  M  Q  L  D  F  S  C  L  L  Y  R :   W  C  F  F  L  Y  *  L  V  H  F  *  I  S  I  S  K  A  *  S  K  S  C  L  H  *  C  H  L  L  L  *  Q  L  L  L  F  F  V  E  M  Q  L  H  R  V  L  L  Q  S  L  C  Q  D  N  R  L  S  *  L  L  L  F  F  M  R  L  A  S  S  L  A  M  Y  S  Q  G  C  L  E  L  I  C  P  P  Q  G  Q  Y  L  L  K  S  E  C  R :   T  R  F  L  E  *  F  *  P  L  S  T  L  V  I  H  L  L  Q  Y  H  V  P  F  L  V  F  A  I  R  Y  L  A  V  P  W  L  A  Y  G  G  V  L  F  Q  I  K  C  R  T  K  S  L  C  W  Q  F  Y  D  G  L  N  I  R  L  *  F  F  A  V  I  I  K  L  G  S  Q  *  I  R  R  S  F  Y  F  F  G  K  F  I  V  M  S  G  E  S  A  L  I  C  L  *  *  N  Q  F  Y  F  V  G  G  G  G  S  K  T  Y  K  H  L  D  H  W  Q  E  F  I  C  I  *  Y  L  I  L  V  L  Y  </first_frame>
            <second_frame>  S  G  I  G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S  R  C  S  W  T  F  H  V  Y  F  T   : G  G  A  S  S  C  I  S  W  C  I  S  E  S  V  F  Q  R  P  S  Q  N  R  V  S  I  D  A  T  Y  C  C  S  N  C  C  C  S  L  W  K  C  N  C  T  E  F  F  C  N  P  Y  V  R  T  T  G  C  H  S  C  C  S  S  S  C  V  W  L  L  L  W  L  C  T  R  K  D  A  W  S  *  Y  V  L  L  K  D  N  I  Y  *  S  R  N  A   : E  L  G  S  W  S  S  S  S  H  S  A  L  W  *  S  T  Y  C  S  T  M  C  R  F  *  C  L  P  F  D  I  W  Q  C  L  G  W  H  M  E  A  F  Y  S  R  *  S  A  G  L  S  H  S  V  G  N  S  M  M  V  *  I  *  D  C  S  F  S  Q  *  S  S  S  L  V  V  S  E  F  G  D  L  F  I  F  L  G  S  S  *  *  C  L  A  N  Q  H  *  S  V  C  S  K  T  N  F  T  L  L  V  V  A  V  V  K  P  I  N  I  L  I  I  G  R  N  L  S  A  S  D  I  *  F  L  F  C  I </second_frame>
            <third_frame>   L  V  *  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A  V  D  A  A  G  L  F  M  S  T  L  Q  :  V  V  L  L  P  V  L  A  G  A  F  L  N  Q  Y  F  K  G  L  V  K  I  V  S  P  L  M  P  P  I  A  V  A  T  V  A  V  L  C  G  N  A  I  A  Q  S  S  S  A  I  L  M  S  G  Q  Q  V  V  I  A  A  A  L  L  H  A  S  G  F  F  F  G  Y  V  L  A  R  M  L  G  V  D  M  S  S  S  R  T  I  S  I  E  V  G  M  Q  :  N  S  V  L  G  V  V  L  A  T  Q  H  F  G  N  P  L  T  A  V  P  C  A  V  S  S  V  C  H  S  I  F  G  S  A  L  A  G  I  W  R  R  S  I  P  D  K  V  Q  D  *  V  T  L  L  A  I  L  *  W  S  E  Y  K  I  V  V  F  R  S  D  H  Q  A  W  *  S  V  N  S  E  I  F  L  F  F  W  E  V  H  S  D  V  W  R  I  S  I  N  L  S  V  V  K  P  I  L  L  C  W  W  W  R  *  *  N  L  *  T  S  *  S  L  A  G  I  Y  L  H  L  I  S  N  S  C  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6932" stop="7025"/>
                    <exon start="7104" stop="7137"/>
                    <exon start="7237" stop="7291"/>
                    <exon start="8084" stop="8167"/>
                    <exon start="8249" stop="8536"/>
                    <exon start="8643" stop="8795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVAVDAAGLFMSTLQVVLLPVLAGAFLNQYFKGLVKIVSPLMPPIAVATVAVLCGNAIAQSSSAILMSGQQVVIAAALLHASGFFFGYVLARMLGVDMSSSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSIFGSALAGIWRRSIPDKVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14347" PGL_stop="8643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14347" e_stop="14324"/>
            <exon e_start="9048" e_stop="8643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.755" e_score="0.667"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="14347" e_stop="14324" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.755">
            <gDNA_intron_boundary i_start="14323" i_stop="9049" i_length="5275"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9048" e_stop="8643" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14347" stop="14324"/>
              <exon start="9048" stop="8643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCTTTCTTTGTGTTTAGCTT : AACAAGAATTAGATATCAGATGCAGATAAATTCCTGCCAATGATCAAGATGTTTATAGGTTTTACTACCGCCACCACCAACAAAGTAAAATTGGTTTTACTACAGACAGATTAATGCTGATTCGCCAGACATCACTATGAACTTCCCAAAAAAATAAAAAGATCTCCGAATTCACTGACTACCAAGCTTGATGATCACTGCGAAAAACTACAATCTTATATTCAGACCATCATAGAATTGCCAACAGAGTGACTTAGTCCTGCACTTTATCTGGAATAGAACGCCTCCATATGCCAGCCAAGGCACTGCCAAATATCGAATGGCAAACACTAGAAACGGCACATGGTACTGCAGTAAGTGGATTACCAAAGTGCTGAGTGGCTAGAACTACTCCAAGAACCGAGTT</gDNA_template>
            <first_frame> S  F  F  L  C  V  *  L  :  N  K  N  *  I  S  D  A  D  K  F  L  P  M  I  K  M  F  I  G  F  T  T  A  T  T  N  K  V  K  L  V  L  L  Q  T  D  *  C  *  F  A  R  H  H  Y  E  L  P  K  K  I  K  R  S  P  N  S  L  T  T  K  L  D  D  H  C  E  K  L  Q  S  Y  I  Q  T  I  I  E  L  P  T  E  *  L  S  P  A  L  Y  L  E  *  N  A  S  I  C  Q  P  R  H  C  Q  I  S  N  G  K  H  *  K  R  H  M  V  L  Q  *  V  D  Y  Q  S  A  E  W  L  E  L  L  Q  E  P  S  </first_frame>
            <second_frame>  L  S  F  F  V  F  S  L :   T  R  I  R  Y  Q  M  Q  I  N  S  C  Q  *  S  R  C  L  *  V  L  L  P  P  P  P  T  K  *  N  W  F  Y  Y  R  Q  I  N  A  D  S  P  D  I  T  M  N  F  P  K  K  *  K  D  L  R  I  H  *  L  P  S  L  M  I  T  A  K  N  Y  N  L  I  F  R  P  S  *  N  C  Q  Q  S  D  L  V  L  H  F  I  W  N  R  T  P  P  Y  A  S  Q  G  T  A  K  Y  R  M  A  N  T  R  N  G  T  W  Y  C  S  K  W  I  T  K  V  L  S  G  *  N  Y  S  K  N  R  V </second_frame>
            <third_frame>   F  L  S  L  C  L  A   : *  Q  E  L  D  I  R  C  R  *  I  P  A  N  D  Q  D  V  Y  R  F  Y  Y  R  H  H  Q  Q  S  K  I  G  F  T  T  D  R  L  M  L  I  R  Q  T  S  L  *  T  S  Q  K  N  K  K  I  S  E  F  T  D  Y  Q  A  *  *  S  L  R  K  T  T  I  L  Y  S  D  H  H  R  I  A  N  R  V  T  *  S  C  T  L  S  G  I  E  R  L  H  M  P  A  K  A  L  P  N  I  E  W  Q  T  L  E  T  A  H  G  T  A  V  S  G  L  P  K  C  *  V  A  R  T  T  P  R  T  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0221M09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9849" e_stop="9826"/>
            <exon e_start="9048" e_stop="8855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.755" e_score="0.667"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="9849" e_stop="9826" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.755">
            <gDNA_intron_boundary i_start="9825" i_stop="9049" i_length="777"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9048" e_stop="8855" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9849" stop="9826"/>
              <exon start="9048" stop="8855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTTATTTTTTCAATATATAG : AACAAGAATTAGATATCAGATGCAGATAAATTCCTGCCAATGATCAAGATGTTTATAGGTTTTACTACCGCCACCACCAACAAAGTAAAATTGGTTTTACTACAGACAGATTAATGCTGATTCGCCAGACATCACTATGAACTTCCCAAAAAAATAAAAAGATCTCCGAATTCACTGACTACCAAGCTTGATGA</gDNA_template>
            <first_frame> N  F  Y  F  F  N  I  *  :  N  K  N  *  I  S  D  A  D  K  F  L  P  M  I  K  M  F  I  G  F  T  T  A  T  T  N  K  V  K  L  V  L  L  Q  T  D  *  C  *  F  A  R  H  H  Y  E  L  P  K  K  I  K  R  S  P  N  S  L  T  T  K  L  D   </first_frame>
            <second_frame>  I  F  I  F  S  I  Y  R :   T  R  I  R  Y  Q  M  Q  I  N  S  C  Q  *  S  R  C  L  *  V  L  L  P  P  P  P  T  K  *  N  W  F  Y  Y  R  Q  I  N  A  D  S  P  D  I  T  M  N  F  P  K  K  *  K  D  L  R  I  H  *  L  P  S  L  M  </second_frame>
            <third_frame>   F  L  F  F  Q  Y  I   : E  Q  E  L  D  I  R  C  R  *  I  P  A  N  D  Q  D  V  Y  R  F  Y  Y  R  H  H  Q  Q  S  K  I  G  F  T  T  D  R  L  M  L  I  R  Q  T  S  L  *  T  S  Q  K  N  K  K  I  S  E  F  T  D  Y  Q  A  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0221M09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13612" PGL_stop="14142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13612" e_stop="14142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="13612" e_stop="14142" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13612" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13612" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</gDNA_template>
            <first_frame> F  F  L  S  P  Y  P  K  S  I  K  E  K  N  *  H  K  K  K  N  *  W  L  V  I  M  N  L  N  Y  Q  I  I  I  V  I  E  V  T  M  T  W  T  R  T  R  M  S  K  I  T  *  K  R  R  K  K  K  M  I  I  Q  M  T  T  T  F  V  V  V  V  V  E  E  E  D  *  Q  T  S  F  R  G  K  S  *  T  L  E  R  L  G  F  K  N  G  I  E  Y  F  Y  *  Y  V  P  R  G  Y  L  W  I  L  S  F  S  T  L  S  L  S  A  R  L  A  C  A  F  L  S  M  V  G  L  R  *  R  S  P  F  F  D  A  *  P  M  R  C  I  Y  G  T  C  G  Y  D  S  R  C  I  N  Y  V  L  T  M  K  K  W  M  K  I  K  L  L  V  V  V </first_frame>
            <second_frame>  F  F  Y  L  H  I  P  N  P  *  K  K  K  T  S  T  K  K  K  I  N  G  *  S  S  *  T  *  T  I  K  *  L  *  *  S  K  *  R  *  H  G  R  G  R  G  *  A  R  *  H  R  R  G  G  K  R  R  *  *  F  K  *  L  Q  H  L  *  *  S  *  S  R  R  R  I  D  R  L  L  F  V  E  S  H  R  P  *  S  A  L  G  S  R  M  E  S  S  I  F  I  S  M  C  H  G  A  I  C  G  S  S  L  F  L  L  S  L  Y  Q  R  D  L  H  V  P  F  Y  R  W  L  V  C  G  N  G  H  R  S  S  M  H  D  R  C  D  A  F  M  E  H  V  D  T  I  Q  D  A  *  I  T  S  L  Q  *  K  N  G  *  K  S  N  Y  *  *  *   </second_frame>
            <third_frame>   F  F  I  S  I  S  Q  I  H  K  R  K  K  L  A  Q  K  K  K  L  M  A  S  H  H  E  L  E  L  S  N  N  Y  S  D  R  S  D  D  D  M  D  E  D  E  D  E  Q  D  N  I  E  E  E  E  K  E  D  D  N  S  N  D  Y  N  I  C  S  S  R  S  R  G  G  G  L  T  D  F  F  S  W  K  V  I  D  P  R  A  P  W  V  Q  E  W  N  R  V  F  L  L  V  C  A  T  G  L  F  V  D  P  L  F  F  Y  S  L  S  I  S  E  T  C  M  C  L  F  I  D  G  W  F  A  V  T  V  T  V  L  R  C  M  T  D  A  M  H  L  W  N  M  W  I  R  F  K  M  H  K  L  R  P  Y  N  E  K  M  D  E  N  Q  I  T  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13614" stop="14141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFISISQIHKRKKLAQKKKLMASHHELELSNNYSDRSDDDMDEDEDEQDNIEEEEKEDDNSNDYNICSSRSRGGGLTDFFSWKVIDPRAPWVQEWNRVFLLVCATGLFVDPLFFYSLSISETCMCLFIDGWFAVTVTVLRCMTDAMHLWNMWIRFKMHKLRPYNEKMDENQITSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15990" PGL_stop="19824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15990" e_stop="16081"/>
            <exon e_start="16460" e_stop="16773"/>
            <exon e_start="16934" e_stop="17042"/>
            <exon e_start="17445" e_stop="17681"/>
            <exon e_start="18633" e_stop="18719"/>
            <exon e_start="18841" e_stop="18983"/>
            <exon e_start="19234" e_stop="19649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.018" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15990" e_stop="16081" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16082" i_stop="16459" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16460" e_stop="16773" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16774" i_stop="16933" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16934" e_stop="17042" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17043" i_stop="17444" i_length="402"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17445" e_stop="17681" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17682" i_stop="18632" i_length="951"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18633" e_stop="18719" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.018">
            <gDNA_intron_boundary i_start="18720" i_stop="18840" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18841" e_stop="18983" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.945">
            <gDNA_intron_boundary i_start="18984" i_stop="19233" i_length="250"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="19234" e_stop="19649" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15990" stop="16081"/>
              <exon start="16460" stop="16773"/>
              <exon start="16934" stop="16949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16761" stop="16773"/>
              <exon start="16934" stop="17042"/>
              <exon start="17445" stop="17681"/>
              <exon start="18633" stop="18719"/>
              <exon start="18841" stop="18957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17475" stop="17681"/>
              <exon start="18633" stop="18719"/>
              <exon start="18841" stop="18983"/>
              <exon start="19234" stop="19649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18892" stop="18983"/>
              <exon start="19234" stop="19425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT : GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG : TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG : GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG : GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA : ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG : GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATG</gDNA_template>
            <first_frame> *  D  A  C  R  I  S  L  D  T  F  L  V  L  F  G  G  E  L  L  L  T  *  L  L  I  L  L  P  P  M :   Q  W  E  H  V  G  T  C  *  E  S  K  G  Q  Q  N  V  *  N  N  S  V  E  L  Q  M  V  V  A  *  E  C  W  H  V  K  R  K  Y  F  M  E  Q  V  V  W  *  S  I  E  V  E  S  Y  G  V  S  P  K  L  Q  D  Q  H  V  *  P  L  N  T  I  L  I  M  E  F  I  N  G  L  F  N  L  S  Q  M  R  I  V  L  R  K  Y  Y  F  P  S  S  G  V  S  *  L  S   : V  H  L  E  T  W  R  A  Q  Q  I  G  W  K  M  Y  S  *  S  L  F  S  L  L  V  F  F  L  S  L  C  *  L  V  I  S  R :   Y  S  C  M  Q  Q  H  Q  R  N  K  Q  C  N  *  K  *  E  M  *  N  G  G  *  G  E  E  G  C  L  K  D  T  S  K  G  S  E  I  M  K  G  I  D  L  Q  Q  Q  E  E  L  M  N  M  R  *  *  A  T  F  L  R  D  L  E  E  T  S  N  I  I  F  V  W  T  W  L  D  R :   F  L  C  F  N  I  W  I  I  W  S  W  R  T  Y  V  T  A  *  N  P  *  F  S  L  K  E  K  Q :   *  Q  E  K  V  I  Q  F  K  E  C  C  S  *  *  E  V  I  S  K  A  V  K  N  L  E  M  V  S  K  V  V  A  C  W  A  L  E  T  S  A  A  T  N  F  S  H   : G  A  S  G  N  P  S  W  S  V  Y  R  L  P  P  H  R  *  *  L  S  R  P  Q  K  R  L  A  S  K  Q  M  M  S  S  M  S  L  N  I  S  A  T  H  L  *  M  R  K  *  R  E  A  P  D  I  I  L  Q  D  G  E  L  G  L  P  L  L  F  S  W  P  G  G  D  I  D  T  G  *  L  S  R  R  C  P  S  F  D  Q  D  D  R  C  L  D  L  L  H  *  Q  K  T  D  S  G  Y  I  Q  L  C  S  L  H  Q  S  L  I  R  T  I  L  I  F  K  K  S  N  K  Q  M  E  C  Y  L  L  S  V  M </first_frame>
            <second_frame>  K  T  H  A  E  S  L  W  I  H  F  W  Y  C  L  V  G  N  C  S  *  L  D  C  L  F  C  C  L  P   : C  S  G  S  M  L  V  L  A  R  N  P  K  G  S  K  M  F  E  T  T  V  *  S  Y  K  W  L  *  P  K  N  V  G  M  *  R  E  N  I  L  W  N  K  *  F  G  E  A  *  K  *  S  H  M  G  *  V  Q  N  C  K  I  N  M  S  S  L  *  T  Q  F  *  L  W  S  L  *  M  D  C  S  T  C  H  K  *  E  S  F  *  E  N  I  I  S  H  L  L  G  S  H  D  S  Q  :  Y  I  W  K  L  G  E  H  N  R  L  A  G  R  C  I  H  N  H  C  S  H  Y  W  S  S  S  C  H  Y  V  D  W  *  Y  Q   : G  I  L  A  C  N  N  I  K  E  T  S  N  A  T  K  N  E  K  C  R  M  V  D  E  E  K  K  V  A  S  R  I  Q  A  K  G  Q  K  L  *  K  A  *  I  C  S  N  K  R  S  *  *  I  *  D  D  K  Q  P  S  *  G  T  *  K  R  H  Q  I  S  S  L  F  G  L  G  *  T   : G  S  F  V  S  T  Y  G  *  F  G  P  G  E  H  M  *  P  R  K  I  L  D  F  H  *  R  R  N   : N  N  K  R  R  *  S  S  S  K  N  V  V  H  S  E  R  S  S  P  K  Q  S  R  T  *  R  W  C  Q  K  L  L  H  V  G  P  W  K  L  Q  R  R  R  T  S  L  M  :  V  P  P  E  T  L  R  G  A  S  T  A  F  L  L  I  A  S  D  S  R  D  H  R  S  V  W  P  R  S  R  *  C  Q  V  C  H  S  T  F  P  L  H  I  C  E  *  E  S  E  E  K  R  Q  I  L  F  S  R  M  A  N  L  G  C  R  C  Y  S  V  G  L  E  E  I  *  T  P  A  D  S  H  V  V  V  L  H  S  T  K  T  T  V  V  S  I  F  F  I  N  R  R  Q  T  Q  A  I  Y  S  F  A  H  F  T  K  A  *  S  G  R  F  *  F  L  K  R  A  T  N  K  W  N  V  T  F  F  L  L   </second_frame>
            <third_frame>   R  R  M  Q  N  L  S  G  Y  I  F  G  T  V  W  W  G  I  A  L  N  L  I  A  Y  F  V  A  S  H  :  A  V  G  A  C  W  Y  L  L  G  I  Q  R  A  A  K  C  L  K  Q  Q  C  R  V  T  N  G  C  S  L  R  M  L  A  C  E  E  K  I  F  Y  G  T  S  S  L  V  K  H  R  S  R  V  I  W  G  E  S  K  I  A  R  S  T  C  L  A  S  E  H  N  F  D  Y  G  V  Y  K  W  T  V  Q  L  V  T  N  E  N  R  F  E  K  I  L  F  P  I  F  W  G  L  M  T  L  S :   T  F  G  N  L  E  S  T  T  D  W  L  E  D  V  F  I  I  I  V  L  T  T  G  L  L  L  V  T  M  L  I  G  N  I  K  :  V  F  L  H  A  T  T  S  K  K  Q  A  M  Q  L  K  M  R  N  V  E  W  W  M  R  R  R  R  L  P  Q  G  Y  K  Q  R  V  R  N  Y  E  R  H  R  F  A  A  T  R  G  V  D  E  Y  E  M  I  S  N  L  P  E  G  L  R  R  D  I  K  Y  H  L  C  L  D  L  V  R  Q  :  V  P  L  F  Q  H  M  D  N  L  V  L  E  N  I  C  D  R  V  K  S  L  I  F  T  K  G  E  T  :  I  T  R  E  G  D  P  V  Q  R  M  L  F  I  V  R  G  H  L  Q  S  S  Q  E  L  R  D  G  V  K  S  C  C  M  L  G  P  G  N  F  S  G  D  E  L  L  S  W :   C  L  R  K  P  F  V  E  R  L  P  P  S  S  S  S  L  V  T  L  E  T  T  E  A  F  G  L  E  A  D  D  V  K  Y  V  T  Q  H  F  R  Y  T  F  V  N  E  K  V  K  R  S  A  R  Y  Y  S  P  G  W  R  T  W  A  A  V  A  I  Q  L  A  W  R  R  Y  R  H  R  L  T  L  T  S  L  S  F  I  R  P  R  R  P  L  S  R  S  S  S  L  T  E  D  R  L  R  L  Y  T  A  L  L  T  S  P  K  P  N  Q  D  D  F  D  F  *  K  E  Q  Q  T  N  G  M  L  P  S  F  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15992" stop="16081"/>
                    <exon start="16460" stop="16773"/>
                    <exon start="16934" stop="17042"/>
                    <exon start="17445" stop="17681"/>
                    <exon start="18633" stop="18719"/>
                    <exon start="18841" stop="18983"/>
                    <exon start="19234" stop="19606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1350</number_coding_nucleotides>
                  <number_encoded_amino_acids>450</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRMQNLSGYIFGTVWWGIALNLIAYFVASHAVGACWYLLGIQRAAKCLKQQCRVTNGCSLRMLACEEKIFYGTSSLVKHRSRVIWGESKIARSTCLASEHNFDYGVYKWTVQLVTNENRFEKILFPIFWGLMTLSTFGNLESTTDWLEDVFIIIVLTTGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNVEWWMRRRRLPQGYKQRVRNYERHRFAATRGVDEYEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDNLVLENICDRVKSLIFTKGETITREGDPVQRMLFIVRGHLQSSQELRDGVKSCCMLGPGNFSGDELLSWCLRKPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSLTEDRLRLYTALLTSPKPNQDDFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15990" e_stop="16081"/>
            <exon e_start="16460" e_stop="16773"/>
            <exon e_start="16934" e_stop="17042"/>
            <exon e_start="17445" e_stop="17681"/>
            <exon e_start="18633" e_stop="18719"/>
            <exon e_start="18841" e_stop="19824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.018" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15990" e_stop="16081" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16082" i_stop="16459" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16460" e_stop="16773" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16774" i_stop="16933" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16934" e_stop="17042" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="17043" i_stop="17444" i_length="402"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17445" e_stop="17681" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.961">
            <gDNA_intron_boundary i_start="17682" i_stop="18632" i_length="951"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18633" e_stop="18719" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.018">
            <gDNA_intron_boundary i_start="18720" i_stop="18840" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="0.966">
            <gDNA_exon_boundary e_start="18841" e_stop="19824" e_length="984"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15990" stop="16081"/>
              <exon start="16460" stop="16773"/>
              <exon start="16934" stop="16949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16761" stop="16773"/>
              <exon start="16934" stop="17042"/>
              <exon start="17445" stop="17681"/>
              <exon start="18633" stop="18719"/>
              <exon start="18841" stop="18957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18908" stop="19824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT : GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG : TACATTTGGAAACTTGGAGAGCACAACAGATTGGCTGGAAGATGTATTCATAATCATTGTTCTCACTACTGGTCTTCTTCTTGTCACTATGTTGATTGGTAATATCAAG : GTATTCTTGCATGCAACAACATCAAAGAAACAAGCAATGCAACTAAAAATGAGAAATGTAGAATGGTGGATGAGGAGAAGAAGGTTGCCTCAAGGATACAAGCAAAGGGTCAGAAATTATGAAAGGCATAGATTTGCAGCAACAAGAGGAGTTGATGAATATGAGATGATAAGCAACCTTCCTGAGGGACTTAGAAGAGACATCAAATATCATCTTTGTTTGGACTTGGTTAGACAG : GTTCCTTTGTTTCAACATATGGATAATTTGGTCCTGGAGAACATATGTGACCGCGTAAAATCCTTGATTTTCACTAAAGGAGAAACA : ATAACAAGAGAAGGTGATCCAGTTCAAAGAATGTTGTTCATAGTGAGAGGTCATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGCTGCCGTTGCTATTCAGTTGGCCTGGAGGAGATATAGACACCGGCTGACTCTCACGTCGTTGTCCTTCATTCGACCAAGACGACCGTTGTCTCGATCTTCTTCATTAACAGAAGACAGACTCAGGCTATATACAGCTTTGCTCACTTCACCAAAGCCTAATCAGGACGATTTTGATTTTTAAAAAGAGCAACAAACAAATGGAATGTTACCTTCTTTCTGTTATGAGATAGGAGCACATCCCCCTCCCTCTATATGTCCTTCAATTATCCATTCATGTGATATGTAGTAGTCTCTTCGTTTCAATTTATGTGAATTCGTGGACACCGAGTTTAAGAAAGAAAAGAAGATTTTGATCTACAGTCTGTAGATTTTGAGGTCATGTAGAACATCTCAGATCAA</gDNA_template>
            <first_frame> *  D  A  C  R  I  S  L  D  T  F  L  V  L  F  G  G  E  L  L  L  T  *  L  L  I  L  L  P  P  M :   Q  W  E  H  V  G  T  C  *  E  S  K  G  Q  Q  N  V  *  N  N  S  V  E  L  Q  M  V  V  A  *  E  C  W  H  V  K  R  K  Y  F  M  E  Q  V  V  W  *  S  I  E  V  E  S  Y  G  V  S  P  K  L  Q  D  Q  H  V  *  P  L  N  T  I  L  I  M  E  F  I  N  G  L  F  N  L  S  Q  M  R  I  V  L  R  K  Y  Y  F  P  S  S  G  V  S  *  L  S   : V  H  L  E  T  W  R  A  Q  Q  I  G  W  K  M  Y  S  *  S  L  F  S  L  L  V  F  F  L  S  L  C  *  L  V  I  S  R :   Y  S  C  M  Q  Q  H  Q  R  N  K  Q  C  N  *  K  *  E  M  *  N  G  G  *  G  E  E  G  C  L  K  D  T  S  K  G  S  E  I  M  K  G  I  D  L  Q  Q  Q  E  E  L  M  N  M  R  *  *  A  T  F  L  R  D  L  E  E  T  S  N  I  I  F  V  W  T  W  L  D  R :   F  L  C  F  N  I  W  I  I  W  S  W  R  T  Y  V  T  A  *  N  P  *  F  S  L  K  E  K  Q :   *  Q  E  K  V  I  Q  F  K  E  C  C  S  *  *  E  V  I  S  K  A  V  K  N  L  E  M  V  S  K  V  V  A  C  W  A  L  E  T  S  A  A  T  N  F  S  H  G  K  F  R  S  E  S  S  C  L  Y  L  G  N  *  F  E  K  Q  I  *  *  T  R  M  V  V  Y  T  R  L  I  H  S  R  I  D  G  P  I  P  M  I  T  K  I  K  *  *  H  L  W  L  P  R  I  L  G  K  Q  A  F  V  Y  F  D  V  L  I  A  *  I  F  C  V  L  H  S  F  F  P  P  N  R  C  L  R  K  P  F  V  E  R  L  P  P  S  S  S  S  L  V  T  L  E  T  T  E  A  F  G  L  E  A  D  D  V  K  Y  V  T  Q  H  F  R  Y  T  F  V  N  E  K  V  K  R  S  A  R  Y  Y  S  P  G  W  R  T  W  A  A  V  A  I  Q  L  A  W  R  R  Y  R  H  R  L  T  L  T  S  L  S  F  I  R  P  R  R  P  L  S  R  S  S  S  L  T  E  D  R  L  R  L  Y  T  A  L  L  T  S  P  K  P  N  Q  D  D  F  D  F  *  K  E  Q  Q  T  N  G  M  L  P  S  F  C  Y  E  I  G  A  H  P  P  P  S  I  C  P  S  I  I  H  S  C  D  M  *  *  S  L  R  F  N  L  C  E  F  V  D  T  E  F  K  K  E  K  K  I  L  I  Y  S  L  *  I  L  R  S  C  R  T  S  Q  I   </first_frame>
            <second_frame>  K  T  H  A  E  S  L  W  I  H  F  W  Y  C  L  V  G  N  C  S  *  L  D  C  L  F  C  C  L  P   : C  S  G  S  M  L  V  L  A  R  N  P  K  G  S  K  M  F  E  T  T  V  *  S  Y  K  W  L  *  P  K  N  V  G  M  *  R  E  N  I  L  W  N  K  *  F  G  E  A  *  K  *  S  H  M  G  *  V  Q  N  C  K  I  N  M  S  S  L  *  T  Q  F  *  L  W  S  L  *  M  D  C  S  T  C  H  K  *  E  S  F  *  E  N  I  I  S  H  L  L  G  S  H  D  S  Q  :  Y  I  W  K  L  G  E  H  N  R  L  A  G  R  C  I  H  N  H  C  S  H  Y  W  S  S  S  C  H  Y  V  D  W  *  Y  Q   : G  I  L  A  C  N  N  I  K  E  T  S  N  A  T  K  N  E  K  C  R  M  V  D  E  E  K  K  V  A  S  R  I  Q  A  K  G  Q  K  L  *  K  A  *  I  C  S  N  K  R  S  *  *  I  *  D  D  K  Q  P  S  *  G  T  *  K  R  H  Q  I  S  S  L  F  G  L  G  *  T   : G  S  F  V  S  T  Y  G  *  F  G  P  G  E  H  M  *  P  R  K  I  L  D  F  H  *  R  R  N   : N  N  K  R  R  *  S  S  S  K  N  V  V  H  S  E  R  S  S  P  K  Q  S  R  T  *  R  W  C  Q  K  L  L  H  V  G  P  W  K  L  Q  R  R  R  T  S  L  M  V  S  L  G  V  R  V  V  V  C  I  W  V  I  N  L  K  N  R  S  S  K  L  E  W  *  C  T  Q  G  *  F  T  L  G  L  M  V  P  S  Q  *  S  L  K  *  N  D  N  T  F  G  F  P  E  S  W  V  N  R  L  S  Y  I  L  M  C  *  *  P  E  Y  F  V  F  F  I  H  F  F  P  P  T  G  A  S  G  N  P  S  W  S  V  Y  R  L  P  P  H  R  *  *  L  S  R  P  Q  K  R  L  A  S  K  Q  M  M  S  S  M  S  L  N  I  S  A  T  H  L  *  M  R  K  *  R  E  A  P  D  I  I  L  Q  D  G  E  L  G  L  P  L  L  F  S  W  P  G  G  D  I  D  T  G  *  L  S  R  R  C  P  S  F  D  Q  D  D  R  C  L  D  L  L  H  *  Q  K  T  D  S  G  Y  I  Q  L  C  S  L  H  Q  S  L  I  R  T  I  L  I  F  K  K  S  N  K  Q  M  E  C  Y  L  L  S  V  M  R  *  E  H  I  P  L  P  L  Y  V  L  Q  L  S  I  H  V  I  C  S  S  L  F  V  S  I  Y  V  N  S  W  T  P  S  L  R  K  K  R  R  F  *  S  T  V  C  R  F  *  G  H  V  E  H  L  R  S  </second_frame>
            <third_frame>   R  R  M  Q  N  L  S  G  Y  I  F  G  T  V  W  W  G  I  A  L  N  L  I  A  Y  F  V  A  S  H  :  A  V  G  A  C  W  Y  L  L  G  I  Q  R  A  A  K  C  L  K  Q  Q  C  R  V  T  N  G  C  S  L  R  M  L  A  C  E  E  K  I  F  Y  G  T  S  S  L  V  K  H  R  S  R  V  I  W  G  E  S  K  I  A  R  S  T  C  L  A  S  E  H  N  F  D  Y  G  V  Y  K  W  T  V  Q  L  V  T  N  E  N  R  F  E  K  I  L  F  P  I  F  W  G  L  M  T  L  S :   T  F  G  N  L  E  S  T  T  D  W  L  E  D  V  F  I  I  I  V  L  T  T  G  L  L  L  V  T  M  L  I  G  N  I  K  :  V  F  L  H  A  T  T  S  K  K  Q  A  M  Q  L  K  M  R  N  V  E  W  W  M  R  R  R  R  L  P  Q  G  Y  K  Q  R  V  R  N  Y  E  R  H  R  F  A  A  T  R  G  V  D  E  Y  E  M  I  S  N  L  P  E  G  L  R  R  D  I  K  Y  H  L  C  L  D  L  V  R  Q  :  V  P  L  F  Q  H  M  D  N  L  V  L  E  N  I  C  D  R  V  K  S  L  I  F  T  K  G  E  T  :  I  T  R  E  G  D  P  V  Q  R  M  L  F  I  V  R  G  H  L  Q  S  S  Q  E  L  R  D  G  V  K  S  C  C  M  L  G  P  G  N  F  S  G  D  E  L  L  S  W  *  V  *  E  *  E  *  L  F  V  F  G  *  L  I  *  K  T  D  L  V  N  *  N  G  S  V  H  K  V  N  S  L  *  D  *  W  S  H  P  N  D  H  *  N  K  M  I  T  P  L  A  S  Q  N  L  G  *  T  G  F  R  I  F  *  C  V  N  S  L  N  I  L  C  S  S  F  I  F  S  P  Q  Q  V  P  P  E  T  L  R  G  A  S  T  A  F  L  L  I  A  S  D  S  R  D  H  R  S  V  W  P  R  S  R  *  C  Q  V  C  H  S  T  F  P  L  H  I  C  E  *  E  S  E  E  K  R  Q  I  L  F  S  R  M  A  N  L  G  C  R  C  Y  S  V  G  L  E  E  I  *  T  P  A  D  S  H  V  V  V  L  H  S  T  K  T  T  V  V  S  I  F  F  I  N  R  R  Q  T  Q  A  I  Y  S  F  A  H  F  T  K  A  *  S  G  R  F  *  F  L  K  R  A  T  N  K  W  N  V  T  F  F  L  L  *  D  R  S  T  S  P  S  L  Y  M  S  F  N  Y  P  F  M  *  Y  V  V  V  S  S  F  Q  F  M  *  I  R  G  H  R  V  *  E  R  K  E  D  F  D  L  Q  S  V  D  F  E  V  M  *  N  I  S  D  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15992" stop="16081"/>
                    <exon start="16460" stop="16773"/>
                    <exon start="16934" stop="17042"/>
                    <exon start="17445" stop="17681"/>
                    <exon start="18633" stop="18719"/>
                    <exon start="18841" stop="18987"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRMQNLSGYIFGTVWWGIALNLIAYFVASHAVGACWYLLGIQRAAKCLKQQCRVTNGCSLRMLACEEKIFYGTSSLVKHRSRVIWGESKIARSTCLASEHNFDYGVYKWTVQLVTNENRFEKILFPIFWGLMTLSTFGNLESTTDWLEDVFIIIVLTTGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNVEWWMRRRRLPQGYKQRVRNYERHRFAATRGVDEYEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDNLVLENICDRVKSLIFTKGETITREGDPVQRMLFIVRGHLQSSQELRDGVKSCCMLGPGNFSGDELLSW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19196" stop="19606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFCVLHSFFPPNRCLRKPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSSSLTEDRLRLYTALLTSPKPNQDDFDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23958" PGL_stop="19857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23958" e_stop="23729"/>
            <exon e_start="23104" e_stop="23034"/>
            <exon e_start="22683" e_stop="22602"/>
            <exon e_start="22480" e_stop="22362"/>
            <exon e_start="20487" e_stop="20410"/>
            <exon e_start="20326" e_stop="20207"/>
            <exon e_start="20110" e_stop="19857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23958" e_stop="23729" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.907">
            <gDNA_intron_boundary i_start="23728" i_stop="23105" i_length="624"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23104" e_stop="23034" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.952">
            <gDNA_intron_boundary i_start="23033" i_stop="22684" i_length="350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22683" e_stop="22602" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="22601" i_stop="22481" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22480" e_stop="22362" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.982">
            <gDNA_intron_boundary i_start="22361" i_stop="20488" i_length="1874"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20487" e_stop="20410" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.797">
            <gDNA_intron_boundary i_start="20409" i_stop="20327" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20326" e_stop="20207" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.876">
            <gDNA_intron_boundary i_start="20206" i_stop="20111" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="20110" e_stop="19857" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23958" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22362"/>
              <exon start="20487" stop="20463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23905" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22362"/>
              <exon start="20487" stop="20410"/>
              <exon start="20326" stop="20299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23861" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22362"/>
              <exon start="20487" stop="20410"/>
              <exon start="20326" stop="20250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23861" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23858" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22362"/>
              <exon start="20487" stop="20410"/>
              <exon start="20326" stop="20207"/>
              <exon start="20110" stop="20046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23857" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23856" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22362"/>
              <exon start="20487" stop="20410"/>
              <exon start="20326" stop="20207"/>
              <exon start="20110" stop="19859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23856" stop="23729"/>
              <exon start="23104" stop="23034"/>
              <exon start="22683" stop="22602"/>
              <exon start="22480" stop="22362"/>
              <exon start="20487" stop="20410"/>
              <exon start="20326" stop="20302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22398" stop="22362"/>
              <exon start="20487" stop="20410"/>
              <exon start="20326" stop="20207"/>
              <exon start="20110" stop="19857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTAAAGTCAACTTTTAGCTTCACTAAACGACAATATTCATTCCCCTAAATTTGTTTATGGCCTGAAATTGATAGTTATCATCGGAATACCACCATGGCTGCCGTCGACCACCGCACGCGACAGCAGTCCAACGGCAAACTCTCGTGGCTTTGCCCCTTCACTAAATCCATATTTCCGGCTAAGCGTCGGCTCCGGCTTGATCCTTCTAACAATCTCTACTTTCCAT : ATGAACCTGGAAAGCAGGCGAAGAGTGCCATAAAGATTAAGAACACAAGCAAATCTTTTGTAGCATTCAAG : TTTCAAACTACTGCACCAAAGAGCTGCTACATGCGACCTCCGGGAGGTATTCTTGTACCTGGGGAAAGTTTGATTGCCACTG : TCTTCAAGTTTATTGAACAACCTGAGAACAATGAGAAGCCTATAGATCAAAAGACCAAAGTAAAGTTCAAGATCATAAGTTTGAAGGTGAAAGAAGGAACTGATTATGTACCTGAGTTG : TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA : GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG : AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</gDNA_template>
            <first_frame> *  I  K  V  N  F  *  L  H  *  T  T  I  F  I  P  L  N  L  F  M  A  *  N  *  *  L  S  S  E  Y  H  H  G  C  R  R  P  P  H  A  T  A  V  Q  R  Q  T  L  V  A  L  P  L  H  *  I  H  I  S  G  *  A  S  A  P  A  *  S  F  *  Q  S  L  L  S  I :   *  T  W  K  A  G  E  E  C  H  K  D  *  E  H  K  Q  I  F  C  S  I  Q   : V  S  N  Y  C  T  K  E  L  L  H  A  T  S  G  R  Y  S  C  T  W  G  K  F  D  C  H  C :   L  Q  V  Y  *  T  T  *  E  Q  *  E  A  Y  R  S  K  D  Q  S  K  V  Q  D  H  K  F  E  G  E  R  R  N  *  L  C  T  *  V   : V  *  *  T  K  G  *  S  L  Y  *  A  Y  S  K  G  G  V  L  G  P  *  T  P  F  S   : S  T  G  *  T  K  T  S  A  G  P  S  *  G  C  N  R  S  *  E  E  T  S  C  *  H  R  S  E  S  C  G  R  R  L  N  S  R  *  M   : E  R  A  E  G  E  V  S  C  S  P  T  S  *  G  S  G  F  S  K  A  V  E  S  V  Y  V  S  A  S  F  S  R  I  A  M  Y  N  Q  I  C  T  S  Y  Y  C  L  S  L  D  *  W  C  R  R  L  M  Q  C  F  M  *  R  R  T  L  S  G  D  L  R  L  Y  K  I  R  N  N  Y  I  Q  E  K  I  Q </first_frame>
            <second_frame>  K  L  K  S  T  F  S  F  T  K  R  Q  Y  S  F  P  *  I  C  L  W  P  E  I  D  S  Y  H  R  N  T  T  M  A  A  V  D  H  R  T  R  Q  Q  S  N  G  K  L  S  W  L  C  P  F  T  K  S  I  F  P  A  K  R  R  L  R  L  D  P  S  N  N  L  Y  F  P   : Y  E  P  G  K  Q  A  K  S  A  I  K  I  K  N  T  S  K  S  F  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  Y  M  R  P  P  G  G  I  L  V  P  G  E  S  L  I  A  T   : V  F  K  F  I  E  Q  P  E  N  N  E  K  P  I  D  Q  K  T  K  V  K  F  K  I  I  S  L  K  V  K  E  G  T  D  Y  V  P  E  L  :  F  D  E  Q  K  D  K  V  C  I  E  R  T  L  K  V  V  F  L  D  P  E  R  P  S  P  :  A  L  D  K  L  K  R  Q  L  A  Q  A  E  A  A  T  E  A  E  K  K  P  P  V  D  T  G  P  K  V  V  G  E  G  L  I  V  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  A  V  D  S  V  K  Q  *  R  V  F  M  *  V  R  L  F  P  E  *  Q  C  I  I  R  Y  A  L  L  I  I  A  F  L  W  I  D  G  V  E  G  *  C  N  A  S  C  K  E  E  H  *  V  E  I  *  D  Y  I  R  L  E  I  I  I  F  R  K  R  Y   </second_frame>
            <third_frame>   N  *  S  Q  L  L  A  S  L  N  D  N  I  H  S  P  K  F  V  Y  G  L  K  L  I  V  I  I  G  I  P  P  W  L  P  S  T  T  A  R  D  S  S  P  T  A  N  S  R  G  F  A  P  S  L  N  P  Y  F  R  L  S  V  G  S  G  L  I  L  L  T  I  S  T  F  H  :  M  N  L  E  S  R  R  R  V  P  *  R  L  R  T  Q  A  N  L  L  *  H  S  S :   F  K  L  L  H  Q  R  A  A  T  C  D  L  R  E  V  F  L  Y  L  G  K  V  *  L  P  L  :  S  S  S  L  L  N  N  L  R  T  M  R  S  L  *  I  K  R  P  K  *  S  S  R  S  *  V  *  R  *  K  K  E  L  I  M  Y  L  S  C :   L  M  N  K  R  I  K  S  V  L  S  V  L  *  R  W  C  S  W  T  L  N  A  L  L  Q :   H  W  I  N  *  N  V  S  W  P  K  L  R  L  Q  Q  K  L  R  R  N  L  L  L  T  Q  V  R  K  L  W  E  K  A  *  *  *  M  N  G :   K  S  G  G  R  G  I  L  L  A  N  K  L  R  Q  W  I  Q  *  S  S  R  E  C  L  C  K  C  V  F  F  Q  N  S  N  V  *  S  D  M  H  F  L  L  L  P  F  F  G  L  M  V  *  K  V  N  A  M  L  H  V  K  K  N  T  E  W  R  F  K  I  I  *  D  *  K  *  L  Y  S  G  K  D  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23906" stop="23729"/>
                    <exon start="23104" stop="23034"/>
                    <exon start="22683" stop="22602"/>
                    <exon start="22480" stop="22362"/>
                    <exon start="20487" stop="20410"/>
                    <exon start="20326" stop="20207"/>
                    <exon start="20110" stop="20045"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICLWPEIDSYHRNTTMAAVDHRTRQQSNGKLSWLCPFTKSIFPAKRRLRLDPSNNLYFPYEPGKQAKSAIKIKNTSKSFVAFKFQTTAPKSCYMRPPGGILVPGESLIATVFKFIEQPENNEKPIDQKTKVKFKIISLKVKEGTDYVPELFDEQKDKVCIERTLKVVFLDPERPSPALDKLKRQLAQAEAATEAEKKPPVDTGPKVVGEGLIVDEWKERRERYLARQQVEAVDSVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="29458" PGL_stop="26848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29458" e_stop="29375"/>
            <exon e_start="29206" e_stop="29083"/>
            <exon e_start="28961" e_stop="28913"/>
            <exon e_start="28524" e_stop="28442"/>
            <exon e_start="28278" e_stop="28211"/>
            <exon e_start="27455" e_stop="27381"/>
            <exon e_start="27302" e_stop="27215"/>
            <exon e_start="27138" e_stop="27022"/>
            <exon e_start="26916" e_stop="26848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.863" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="0.991"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29458" e_stop="29375" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.987">
            <gDNA_intron_boundary i_start="29374" i_stop="29207" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29206" e_stop="29083" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="29082" i_stop="28962" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28961" e_stop="28913" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28912" i_stop="28525" i_length="388"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28524" e_stop="28442" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.790">
            <gDNA_intron_boundary i_start="28441" i_stop="28279" i_length="163"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28278" e_stop="28211" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.863">
            <gDNA_intron_boundary i_start="28210" i_stop="27456" i_length="755"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27455" e_stop="27381" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.760">
            <gDNA_intron_boundary i_start="27380" i_stop="27303" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27302" e_stop="27215" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="27214" i_stop="27139" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="27138" e_stop="27022" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27021" i_stop="26917" i_length="105"/>
          </intron>
          <exon e_serial="9" e_score="0.957">
            <gDNA_exon_boundary e_start="26916" e_stop="26848" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29458" stop="29375"/>
              <exon start="29206" stop="29083"/>
              <exon start="28961" stop="28913"/>
              <exon start="28524" stop="28442"/>
              <exon start="28278" stop="28211"/>
              <exon start="27455" stop="27381"/>
              <exon start="27302" stop="27215"/>
              <exon start="27138" stop="27022"/>
              <exon start="26916" stop="26848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGAATCCTGGTATTAACTGCCAGTCCGTGAAGTCGTTCCTGAATCAAGTGAAAAATGGAAAAGAAATGAAAGTTGACAG : CTGGCATATTGTAATGAAAATGAGGGCTCCTAAAGAAGGTTCTTGTGATCCTATTGCACCTCTTGAGCTACCACATTCATTGCATGCTTTTCGCGGTGCGCCTCAAGCTGATACTTTGAACAAG : GAAGGCTATCATGTATTTCGGGGAGGATTTTGGAACTACTTCAGCATAG : GAATGGATGCTCAAGTTTCACATGCATTTCACAGCAAGAGGAAGCTCCATCCAGAAAAGTTCAAACACCAGTTGGTTAATCAG : AGGAATTATGCAAAGCTTGTCTGTAAACAAGGATGGTTTTGCACTTCTTTCATGCACCCATCGTCAAG : AAACATTGCTCAGTTAGCAAATGTCAAAATAATGAAAAGATCAGGTGAATGGATAGACCTACACATTCCTAGCAG : CATTAGGTCTATTGTCTGCCTTAATTTGCCCAGCTTTTCGGGTGGACTTAATCCTTGGGGAAAACCTAACAAGCAGAAGCTGCATGAG : AGGGATCTTACTCCTCCATATGTTGATGATGGTCTACTTGAAGTTGTTGGTTTTCGCGATGCTTGGCATGGACTTATTTTGTTTACTCCAGGAGGGCACGGAACACGTCTTGCACAG : GCGAATAGAATACGATTTGAGTTTCACAAGGGTGCTAGTGAGCATACATTTATGAGAATGGATGGGGAA</gDNA_template>
            <first_frame> K  K  E  S  W  Y  *  L  P  V  R  E  V  V  P  E  S  S  E  K  W  K  R  N  E  S  *  Q  :  L  A  Y  C  N  E  N  E  G  S  *  R  R  F  L  *  S  Y  C  T  S  *  A  T  T  F  I  A  C  F  S  R  C  A  S  S  *  Y  F  E  Q   : G  R  L  S  C  I  S  G  R  I  L  E  L  L  Q  H  R :   N  G  C  S  S  F  T  C  I  S  Q  Q  E  E  A  P  S  R  K  V  Q  T  P  V  G  *  S   : E  E  L  C  K  A  C  L  *  T  R  M  V  L  H  F  F  H  A  P  I  V  K  :  K  H  C  S  V  S  K  C  Q  N  N  E  K  I  R  *  M  D  R  P  T  H  S  *  Q  :  H  *  V  Y  C  L  P  *  F  A  Q  L  F  G  W  T  *  S  L  G  K  T  *  Q  A  E  A  A  *   : E  G  S  Y  S  S  I  C  *  *  W  S  T  *  S  C  W  F  S  R  C  L  A  W  T  Y  F  V  Y  S  R  R  A  R  N  T  S  C  T   : G  E  *  N  T  I  *  V  S  Q  G  C  *  *  A  Y  I  Y  E  N  G  W  G  </first_frame>
            <second_frame>  K  K  N  P  G  I  N  C  Q  S  V  K  S  F  L  N  Q  V  K  N  G  K  E  M  K  V  D  S :   W  H  I  V  M  K  M  R  A  P  K  E  G  S  C  D  P  I  A  P  L  E  L  P  H  S  L  H  A  F  R  G  A  P  Q  A  D  T  L  N  K  :  E  G  Y  H  V  F  R  G  G  F  W  N  Y  F  S  I   : G  M  D  A  Q  V  S  H  A  F  H  S  K  R  K  L  H  P  E  K  F  K  H  Q  L  V  N  Q  :  R  N  Y  A  K  L  V  C  K  Q  G  W  F  C  T  S  F  M  H  P  S  S  R :   N  I  A  Q  L  A  N  V  K  I  M  K  R  S  G  E  W  I  D  L  H  I  P  S  S :   I  R  S  I  V  C  L  N  L  P  S  F  S  G  G  L  N  P  W  G  K  P  N  K  Q  K  L  H  E  :  R  D  L  T  P  P  Y  V  D  D  G  L  L  E  V  V  G  F  R  D  A  W  H  G  L  I  L  F  T  P  G  G  H  G  T  R  L  A  Q  :  A  N  R  I  R  F  E  F  H  K  G  A  S  E  H  T  F  M  R  M  D  G  E </second_frame>
            <third_frame>   K  R  I  L  V  L  T  A  S  P  *  S  R  S  *  I  K  *  K  M  E  K  K  *  K  L  T   : A  G  I  L  *  *  K  *  G  L  L  K  K  V  L  V  I  L  L  H  L  L  S  Y  H  I  H  C  M  L  F  A  V  R  L  K  L  I  L  *  T  R :   K  A  I  M  Y  F  G  E  D  F  G  T  T  S  A  *  :  E  W  M  L  K  F  H  M  H  F  T  A  R  G  S  S  I  Q  K  S  S  N  T  S  W  L  I  R :   G  I  M  Q  S  L  S  V  N  K  D  G  F  A  L  L  S  C  T  H  R  Q   : E  T  L  L  S  *  Q  M  S  K  *  *  K  D  Q  V  N  G  *  T  Y  T  F  L  A   : A  L  G  L  L  S  A  L  I  C  P  A  F  R  V  D  L  I  L  G  E  N  L  T  S  R  S  C  M  R :   G  I  L  L  L  H  M  L  M  M  V  Y  L  K  L  L  V  F  A  M  L  G  M  D  L  F  C  L  L  Q  E  G  T  E  H  V  L  H  R :   R  I  E  Y  D  L  S  F  T  R  V  L  V  S  I  H  L  *  E  W  M  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29457" stop="29375"/>
                    <exon start="29206" stop="29083"/>
                    <exon start="28961" stop="28913"/>
                    <exon start="28524" stop="28442"/>
                    <exon start="28278" stop="28211"/>
                    <exon start="27455" stop="27381"/>
                    <exon start="27302" stop="27215"/>
                    <exon start="27138" stop="27022"/>
                    <exon start="26916" stop="26848"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNPGINCQSVKSFLNQVKNGKEMKVDSWHIVMKMRAPKEGSCDPIAPLELPHSLHAFRGAPQADTLNKEGYHVFRGGFWNYFSIGMDAQVSHAFHSKRKLHPEKFKHQLVNQRNYAKLVCKQGWFCTSFMHPSSRNIAQLANVKIMKRSGEWIDLHIPSSIRSIVCLNLPSFSGGLNPWGKPNKQKLHERDLTPPYVDDGLLEVVGFRDAWHGLILFTPGGHGTRLAQANRIRFEFHKGASEHTFMRMDGE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="38284" PGL_stop="37204"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38284" e_stop="38076"/>
            <exon e_start="37979" e_stop="37820"/>
            <exon e_start="37752" e_stop="37542"/>
            <exon e_start="37465" e_stop="37204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.759" acc_prob="0.983" e_score="0.962"/>
          <exon-intron don_prob="0.963" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="38284" e_stop="38076" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.759" acc_prob="0.983">
            <gDNA_intron_boundary i_start="38075" i_stop="37980" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37979" e_stop="37820" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.979">
            <gDNA_intron_boundary i_start="37819" i_stop="37753" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37752" e_stop="37542" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37541" i_stop="37466" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.966">
            <gDNA_exon_boundary e_start="37465" e_stop="37204" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38284" stop="38076"/>
              <exon start="37979" stop="37820"/>
              <exon start="37752" stop="37569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37694" stop="37542"/>
              <exon start="37465" stop="37204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37694" stop="37542"/>
              <exon start="37465" stop="37205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37694" stop="37542"/>
              <exon start="37465" stop="37205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37694" stop="37542"/>
              <exon start="37465" stop="37291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37693" stop="37542"/>
              <exon start="37465" stop="37204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37693" stop="37542"/>
              <exon start="37465" stop="37204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAAGAAAATATGATAGAGCCAGCCATCGAAGGGACCTTGAATGTTCTGAAATCGTGCTTGAAATCCAATTCTGTTAAAAAAGTTGTATTCACATCATCAATCAGTACCATCACAGCCAGAGACAACTTTGGGAGATGGAGACCTTTTGTCGATGAATCTTGCAAAGTACCTATCCAACATGTTAAGCACACAAAACCAACTGGTTGG : GTTTATGTACTACTAAAGGTTTTGACAGAGGATGCAGCATTTCAGTTTGCAAAAGAAAATGGCATTAATTTGGTTTCAACGATAACACCAACTATAGCTGGTCCATTCCTCACTCCTACAGTTCCATCAAGCATTCAAGTTCTCTTGTCACCAATAACAG : ATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAG : GCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAAGATCTTAT</gDNA_template>
            <first_frame> S  K  K  I  *  *  S  Q  P  S  K  G  P  *  M  F  *  N  R  A  *  N  P  I  L  L  K  K  L  Y  S  H  H  Q  S  V  P  S  Q  P  E  T  T  L  G  D  G  D  L  L  S  M  N  L  A  K  Y  L  S  N  M  L  S  T  Q  N  Q  L  V  G :   F  M  Y  Y  *  R  F  *  Q  R  M  Q  H  F  S  L  Q  K  K  M  A  L  I  W  F  Q  R  *  H  Q  L  *  L  V  H  S  S  L  L  Q  F  H  Q  A  F  K  F  S  C  H  Q  *  Q  :  M  I  L  I  C  *  L  Y  S  P  L  *  T  Q  E  W  D  Q  *  H  *  L  I  *  R  I  Y  V  A  P  T  Y  S  S  W  R  I  L  K  H  K  D  D  I  Y  V  V  L  R  V  G  H  C  L  K  L  S  I  T  L  K  T  S  I  L  T  L  M  Q  R   : G  A  E  D  M  I  Q  *  S  P  R  R  F  H  Q  R  N  *  E  D  S  D  F  L  S  S  M  K  S  T  I  S  *  E  I  Q  L  L  V  V  Y  I  M  D  S  *  P  Q  F  K  S  K  N  C  K  L  H  V  P  K  P  *  L  L  L  *  C  I  S  I  L  L  L  I  S  M  K  *  K  I  L  L  F  F  *  D  L   </first_frame>
            <second_frame>  R  R  K  Y  D  R  A  S  H  R  R  D  L  E  C  S  E  I  V  L  E  I  Q  F  C  *  K  S  C  I  H  I  I  N  Q  Y  H  H  S  Q  R  Q  L  W  E  M  E  T  F  C  R  *  I  L  Q  S  T  Y  P  T  C  *  A  H  K  T  N  W  L   : G  L  C  T  T  K  G  F  D  R  G  C  S  I  S  V  C  K  R  K  W  H  *  F  G  F  N  D  N  T  N  Y  S  W  S  I  P  H  S  Y  S  S  I  K  H  S  S  S  L  V  T  N  N  R :   *  S  *  Y  V  S  Y  T  H  R  C  K  H  K  N  G  I  N  S  I  S  S  Y  R  G  Y  M  S  R  P  H  I  P  H  G  E  Y  *  S  T  R  T  I  Y  M  L  C  S  E  L  G  I  V  *  S  Y  R  S  P  *  K  R  V  S  L  P  *  C  R  E  :  A  R  R  T  *  F  S  D  P  L  G  D  F  I  K  E  I  E  R  T  R  I  F  F  Q  V  *  N  Q  R  Y  H  K  R  Y  N  Y  *  L  Y  T  S  W  I  L  S  L  N  S  K  V  R  I  A  N  Y  M  Y  Q  N  L  N  S  Y  F  D  V  S  V  Y  S  F  *  Y  Q  *  S  R  K  S  Y  Y  F  F  K  I  L  </second_frame>
            <third_frame>   E  E  N  M  I  E  P  A  I  E  G  T  L  N  V  L  K  S  C  L  K  S  N  S  V  K  K  V  V  F  T  S  S  I  S  T  I  T  A  R  D  N  F  G  R  W  R  P  F  V  D  E  S  C  K  V  P  I  Q  H  V  K  H  T  K  P  T  G  W  :  V  Y  V  L  L  K  V  L  T  E  D  A  A  F  Q  F  A  K  E  N  G  I  N  L  V  S  T  I  T  P  T  I  A  G  P  F  L  T  P  T  V  P  S  S  I  Q  V  L  L  S  P  I  T   : D  D  P  D  M  L  A  I  L  T  A  V  N  T  R  M  G  S  I  A  L  A  H  I  E  D  I  C  R  A  H  I  F  L  M  E  N  I  K  A  Q  G  R  Y  I  C  C  A  Q  S  W  A  L  S  E  V  I  D  H  L  K  N  E  Y  P  Y  L  D  A  E  R :   R  G  G  H  D  S  V  I  P  S  E  I  S  S  K  K  L  R  G  L  G  F  S  F  K  Y  E  I  N  D  I  I  R  D  T  I  T  S  C  I  H  H  G  F  L  A  S  I  Q  K  *  E  L  Q  I  T  C  T  K  T  L  T  L  T  L  M  Y  Q  Y  T  P  F  N  I  N  E  V  E  N  L  I  I  F  L  R  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38282" stop="38076"/>
                    <exon start="37979" stop="37820"/>
                    <exon start="37752" stop="37542"/>
                    <exon start="37465" stop="37312"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENMIEPAIEGTLNVLKSCLKSNSVKKVVFTSSISTITARDNFGRWRPFVDESCKVPIQHVKHTKPTGWVYVLLKVLTEDAAFQFAKENGINLVSTITPTIAGPFLTPTVPSSIQVLLSPITDDPDMLAILTAVNTRMGSIALAHIEDICRAHIFLMENIKAQGRYICCAQSWALSEVIDHLKNEYPYLDAERRGGHDSVIPSEISSKKLRGLGFSFKYEINDIIRDTITSCIHHGFLASIQK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37786" e_stop="37212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="37786" e_stop="37212" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37786" stop="37212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACTTGTTAACACGTCTTTTAATTTTTTTATAGATGATCCTGATATGTTAGCTATACTCACCGCTGTAAACACAAGAATGGGATCAATAGCATTAGCTCATATAGAGGATATATGTCGCGCCCACATATTCCTCATGGAGAATATTAAAGCACAAGGACGATATATATGTTGTGCTCAGAGTTGGGCATTGTCTGAAGTTATCGATCACCTTAAAAACGAGTATCCTTACCTTGATGCAGAGAGGTTATTCCATTCGATTTCTACTGCAATAATTAAATCCACATGAAGTTTATATATAGTCTAATTATCTGTGTTACAGGCGCGGAGGACATGATTCAGTGATCCCCTCGGAGATTTCATCAAAGAAATTGAGAGGACTCGGATTTTCTTTCAAGTATGAAATCAACGATATCATAAGAGATACAATTACTAGTTGTATACATCATGGATTCTTAGCCTCAATTCAAAAGTAAGAATTGCAAATTACATGTACCAAAACCTTAACTCTTACTTTGATGTATCAGTATACTCCTTTTAATATCAATGAAGTAGAAAATCTTATTATTTTTTTAA</gDNA_template>
            <first_frame> I  L  V  N  T  S  F  N  F  F  I  D  D  P  D  M  L  A  I  L  T  A  V  N  T  R  M  G  S  I  A  L  A  H  I  E  D  I  C  R  A  H  I  F  L  M  E  N  I  K  A  Q  G  R  Y  I  C  C  A  Q  S  W  A  L  S  E  V  I  D  H  L  K  N  E  Y  P  Y  L  D  A  E  R  L  F  H  S  I  S  T  A  I  I  K  S  T  *  S  L  Y  I  V  *  L  S  V  L  Q  A  R  R  T  *  F  S  D  P  L  G  D  F  I  K  E  I  E  R  T  R  I  F  F  Q  V  *  N  Q  R  Y  H  K  R  Y  N  Y  *  L  Y  T  S  W  I  L  S  L  N  S  K  V  R  I  A  N  Y  M  Y  Q  N  L  N  S  Y  F  D  V  S  V  Y  S  F  *  Y  Q  *  S  R  K  S  Y  Y  F  F   </first_frame>
            <second_frame>  Y  L  L  T  R  L  L  I  F  L  *  M  I  L  I  C  *  L  Y  S  P  L  *  T  Q  E  W  D  Q  *  H  *  L  I  *  R  I  Y  V  A  P  T  Y  S  S  W  R  I  L  K  H  K  D  D  I  Y  V  V  L  R  V  G  H  C  L  K  L  S  I  T  L  K  T  S  I  L  T  L  M  Q  R  G  Y  S  I  R  F  L  L  Q  *  L  N  P  H  E  V  Y  I  *  S  N  Y  L  C  Y  R  R  G  G  H  D  S  V  I  P  S  E  I  S  S  K  K  L  R  G  L  G  F  S  F  K  Y  E  I  N  D  I  I  R  D  T  I  T  S  C  I  H  H  G  F  L  A  S  I  Q  K  *  E  L  Q  I  T  C  T  K  T  L  T  L  T  L  M  Y  Q  Y  T  P  F  N  I  N  E  V  E  N  L  I  I  F  L  </second_frame>
            <third_frame>   T  C  *  H  V  F  *  F  F  Y  R  *  S  *  Y  V  S  Y  T  H  R  C  K  H  K  N  G  I  N  S  I  S  S  Y  R  G  Y  M  S  R  P  H  I  P  H  G  E  Y  *  S  T  R  T  I  Y  M  L  C  S  E  L  G  I  V  *  S  Y  R  S  P  *  K  R  V  S  L  P  *  C  R  E  V  I  P  F  D  F  Y  C  N  N  *  I  H  M  K  F  I  Y  S  L  I  I  C  V  T  G  A  E  D  M  I  Q  *  S  P  R  R  F  H  Q  R  N  *  E  D  S  D  F  L  S  S  M  K  S  T  I  S  *  E  I  Q  L  L  V  V  Y  I  M  D  S  *  P  Q  F  K  S  K  N  C  K  L  H  V  P  K  P  *  L  L  L  *  C  I  S  I  L  L  L  I  S  M  K  *  K  I  L  L  F  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37786" stop="37499"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVNTSFNFFIDDPDMLAILTAVNTRMGSIALAHIEDICRAHIFLMENIKAQGRYICCAQSWALSEVIDHLKNEYPYLDAERLFHSISTAIIKST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="41512" PGL_stop="45240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41512" e_stop="41571"/>
            <exon e_start="42224" e_stop="44185"/>
            <exon e_start="45193" e_stop="45207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.882" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41512" e_stop="41571" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42224" e_stop="44185" e_length="1962"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.882">
            <gDNA_intron_boundary i_start="44186" i_stop="45192" i_length="1007"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="45193" e_stop="45207" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41512" stop="41571"/>
              <exon start="42224" stop="42740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41519" stop="41571"/>
              <exon start="42224" stop="42696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41522" stop="41571"/>
              <exon start="42224" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41530" stop="41571"/>
              <exon start="42224" stop="42737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42246" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42262" stop="42986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42303" stop="42706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42317" stop="42983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42401" stop="42964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42475" stop="43002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42484" stop="42966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42583" stop="43150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42625" stop="43178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="43388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42823" stop="43337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43068" stop="43506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43084" stop="43754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43138" stop="43525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43202" stop="43682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43230" stop="43865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43299" stop="43987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43300" stop="43583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43392" stop="44099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43430" stop="44024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43430" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43468" stop="43905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43659" stop="44185"/>
              <exon start="45193" stop="45207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTCTCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAG : GTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTCGTCCTTGATGATTTGTTGAGCAA : AGAAGAAAAAGAAAA</gDNA_template>
            <first_frame> I  F  L  Q  I  L  S  I  Y  K  L  D  S  S  F  C  R  L  Y  Q  :  V  D  F  G  E  A  D  I  K  C  *  *  E  R  V  C  A  *  S  S  *  *  Q  P  Y  S  M  D  S  H  H  L  V  A  Y  G  V  T  G  S  D  L  S  Y  S  S  C  P  T  V  S  P  L  E  N  R  P  F  G  T  S  K  F  D  S  G  N  S  P  L  V  N  Y  F  N  S  E  T  F  N  T  V  S  D  Y  Q  E  Q  P  S  C  T  E  N  L  S  G  A  S  S  S  S  G  S  S  L  D  Y  N  Q  Y  F  H  R  P  S  P  S  E  D  H  L  P  E  A  P  Y  S  R  N  M  K  H  T  L  L  Q  L  E  S  A  L  M  G  P  D  K  E  A  M  K  S  S  P  Y  L  G  E  N  M  G  A  Q  T  S  G  Q  R  Y  K  A  W  N  K  E  A  Q  V  V  R  H  Q  Q  S  V  V  S  I  L  N  G  I  Q  S  D  K  R  D  N  V  M  E  D  L  P  L  Q  G  V  P  S  S  N  L  K  Q  L  L  I  A  C  A  R  A  L  A  E  N  K  L  D  D  F  E  I  L  V  A  K  A  R  S  V  V  S  V  T  G  D  P  I  Q  R  L  G  A  Y  I  V  E  G  L  V  A  R  K  E  L  S  G  T  T  I  Y  R  S  L  K  C  K  E  P  A  G  K  D  L  F  S  Y  M  Y  I  L  Y  E  I  C  P  Y  L  K  F  G  Y  M  A  A  N  G  A  I  V  E  A  C  R  N  E  D  R  I  H  I  I  D  F  Q  I  A  Q  G  T  Q  W  M  T  L  L  Q  A  L  A  A  R  P  G  G  A  P  Y  V  R  I  T  G  I  D  D  P  V  S  Q  Y  A  R  G  D  G  L  A  A  V  A  R  R  L  S  A  I  S  E  E  F  N  I  A  V  E  F  H  A  V  P  V  F  A  P  E  I  T  W  D  M  L  D  V  R  P  G  E  A  L  A  V  N  F  P  L  Q  L  H  H  T  P  D  E  S  V  D  V  N  N  P  R  D  G  L  I  R  M  I  K  S  L  S  P  K  I  V  T  L  V  E  Q  E  S  N  T  N  T  A  P  F  L  P  R  F  V  E  A  L  D  Y  Y  H  A  M  F  E  S  I  D  V  T  L  L  R  D  M  K  E  R  I  N  V  E  Q  H  C  L  A  R  D  I  V  N  V  I  A  C  E  G  K  E  R  V  E  R  H  E  L  L  G  K  W  K  S  R  F  M  M  A  G  F  Q  Q  Y  P  L  S  S  Y  V  N  S  V  I  K  D  L  M  K  R  Y  S  E  H  Y  T  L  V  E  K  D  G  A  M  L  L  G  W  K  E  R  N  L  V  S  A  S  A  W  F  *  R  V  T  V  H  Y  V  E  T  D  G  *  P  S  F  L  L  L  N  Q  T  I  G  L  I  K  *  L  Y  S  C  Y  V  V  S  I  F  *  N  F  S  C  L  F  F  K  L  S  F  D  I  I  C  *  N  L  *  T  I  I  S  R  P  *  *  F  V  E  Q  :  R  R  K  R  K </first_frame>
            <second_frame>  F  F  S  K  F  Y  Q  S  T  S  *  I  P  P  S  A  D  Y  I  R :   W  I  S  V  K  Q  I  L  S  V  S  E  K  E  F  A  H  R  A  A  N  D  S  R  I  V  W  T  R  T  I  W  L  L  M  V  *  P  V  V  I  C  R  I  L  H  A  L  L  L  V  L  *  R  I  D  H  L  V  H  R  N  L  I  Q  E  I  R  H  L  *  T  I  L  T  L  R  P  S  T  Q  *  V  I  T  R  S  S  P  A  V  Q  R  I  F  Q  V  L  V  L  Q  V  V  P  H  W  I  I  T  N  I  S  I  D  Q  A  P  R  K  I  I  F  Q  K  L  L  T  V  G  T  *  N  I  L  C  C  S  W  S  L  L  *  W  G  Q  T  K  R  Q  *  N  P  A  L  I  L  V  K  I  W  G  H  K  H  Q  V  R  G  I  K  R  G  T  R  K  P  K  L  C  V  I  N  N  Q  *  F  Q  S  L  M  E  F  K  V  I  S  E  T  M  *  W  R  T  C  P  C  R  V  F  R  L  A  I  *  S  S  C  L  *  H  A  P  E  L  L  L  K  T  S  *  M  I  L  K  Y  W  L  L  R  Q  G  V  L  C  P  L  L  E  I  P  S  S  V  L  V  L  T  L  *  K  A  S  *  Q  E  R  S  Y  L  E  L  P  Y  T  G  V  *  S  V  R  S  R  L  V  R  T  C  S  P  T  C  I  S  S  M  K  Y  V  L  T  *  S  S  A  T  W  L  Q  M  V  P  *  *  K  H  A  E  M  K  I  A  S  T  L  *  T  S  K  L  H  R  G  P  N  G  *  L  S  Y  K  L  L  Q  H  D  P  V  V  P  P  T  Y  V  L  Q  E  L  M  I  Q  F  H  S  T  L  G  E  M  D  W  L  Q  L  P  D  G  Y  Q  Q  F  L  R  N  S  T  L  L  L  S  F  M  Q  C  Q  F  L  L  R  K  S  L  G  I  C  L  M  *  G  L  V  R  L  W  L  *  T  F  L  C  N  F  T  T  P  L  M  R  A  L  T  *  I  T  L  E  M  V  S  L  G  *  *  S  R  L  A  P  R  *  S  L  W  W  S  K  N  Q  T  R  T  Q  L  H  F  S  L  G  L  *  K  L  *  I  T  T  M  Q  C  L  S  P  *  M  *  P  Y  *  G  T  *  R  S  G  S  M  W  N  S  T  V  W  L  G  I  *  *  M  S  *  H  V  R  A  R  K  E  *  N  V  T  S  Y  W  G  S  G  N  P  G  S  *  W  Q  V  F  S  N  I  L  *  A  L  M  *  I  Q  *  L  R  T  S  *  S  V  T  R  S  I  I  H  W  W  R  K  T  E  L  C  C  W  G  G  R  S  G  I  *  S  L  R  L  L  G  F  N  E  L  L  F  I  M  W  K  Q  M  V  S  L  L  F  Y  Y  L  T  R  Q  *  D  *  S  S  N  Y  T  H  V  M  *  F  Q  F  S  E  I  L  V  V  Y  F  S  S  Y  R  L  I  L  F  V  K  T  Y  K  Q  L  Y  L  V  L  D  D  L  L  S  K :   E  E  K  E   </second_frame>
            <third_frame>   F  S  P  N  F  I  N  L  Q  V  R  F  L  L  L  Q  I  I  S   : G  G  F  R  *  S  R  Y  *  V  L  V  R  K  S  L  R  I  E  Q  L  M  T  A  V  *  Y  G  L  A  P  F  G  C  L  W  C  D  R  *  *  F  V  V  F  F  M  P  Y  C  *  S  S  R  E  *  T  I  W  Y  I  E  I  *  F  R  K  F  A  T  C  E  L  F  *  L  *  D  L  Q  H  S  K  *  L  P  G  A  A  Q  L  Y  R  E  S  F  R  C  *  F  F  K  W  F  L  T  G  L  *  P  I  F  P  S  T  K  P  L  G  R  S  S  S  R  S  S  L  Q  S  E  H  E  T  Y  S  A  A  V  G  V  C  F  N  G  A  R  Q  R  G  N  E  I  Q  P  L  S  W  *  K  Y  G  G  T  N  I  R  S  E  V  *  S  V  E  Q  G  S  P  S  C  A  S  S  T  I  S  S  F  N  P  *  W  N  S  K  *  *  A  R  Q  C  N  G  G  L  A  L  A  G  C  S  V  *  Q  S  E  A  A  A  Y  S  M  R  Q  S  S  C  *  K  Q  A  R  *  F  *  N  T  G  C  *  G  K  E  C  C  V  R  Y  W  R  S  H  P  A  S  W  C  L  H  C  R  R  P  R  S  K  K  G  V  I  W  N  Y  H  I  Q  E  F  K  V  *  G  A  G  W  *  G  L  V  L  L  H  V  Y  P  L  *  N  M  S  L  P  K  V  R  L  H  G  C  K  W  C  H  S  R  S  M  Q  K  *  R  S  H  P  H  Y  R  L  P  N  C  T  G  D  P  M  D  D  S  L  T  S  S  C  S  T  T  R  W  C  P  L  R  T  Y  Y  R  N  *  *  S  S  F  T  V  R  S  G  R  W  I  G  C  S  C  Q  T  A  I  S  N  F  *  G  I  Q  H  C  C  *  V  S  C  S  A  S  F  C  S  G  N  H  L  G  Y  A  *  C  K  A  W  *  G  S  G  C  K  L  S  F  A  T  S  P  H  P  *  *  E  R  *  R  E  *  P  *  R  W  S  H  *  D  D  K  V  A  *  P  Q  D  S  H  F  G  G  A  R  I  K  H  E  H  S  S  I  S  P  *  V  C  R  S  S  R  L  L  P  C  N  V  *  V  H  R  C  D  P  T  K  G  H  E  G  A  D  Q  C  G  T  A  L  F  G  *  G  Y  S  E  C  H  S  M  *  G  Q  G  K  S  R  T  S  R  A  I  G  E  V  E  I  Q  V  H  D  G  R  F  S  A  I  S  F  E  L  L  C  E  F  S  D  *  G  P  H  E  A  L  L  G  A  L  Y  T  G  G  E  R  R  S  Y  A  V  G  V  E  G  A  E  S  S  L  C  V  C  L  V  L  T  S  Y  C  S  L  C  G  N  R  W  L  A  F  F  F  I  T  *  P  D  N  R  I  D  Q  V  I  I  L  M  L  C  S  F  N  F  L  K  F  *  L  F  I  F  Q  V  I  V  *  Y  Y  L  L  K  L  I  N  N  Y  I  S  S  L  M  I  C  *  A   : K  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42290" stop="43978"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1686</number_coding_nucleotides>
                  <number_encoded_amino_acids>562</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPYSMDSHHLVAYGVTGSDLSYSSCPTVSPLENRPFGTSKFDSGNSPLVNYFNSETFNTVSDYQEQPSCTENLSGASSSSGSSLDYNQYFHRPSPSEDHLPEAPYSRNMKHTLLQLESALMGPDKEAMKSSPYLGENMGAQTSGQRYKAWNKEAQVVRHQQSVVSILNGIQSDKRDNVMEDLPLQGVPSSNLKQLLIACARALAENKLDDFEILVAKARSVVSVTGDPIQRLGAYIVEGLVARKELSGTTIYRSLKCKEPAGKDLFSYMYILYEICPYLKFGYMAANGAIVEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQYARGDGLAAVARRLSAISEEFNIAVEFHAVPVFAPEITWDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLIRMIKSLSPKIVTLVEQESNTNTAPFLPRFVEALDYYHAMFESIDVTLLRDMKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFQQYPLSSYVNSVIKDLMKRYSEHYTLVEKDGAMLLGWKERNLVSASAWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41512" e_stop="41571"/>
            <exon e_start="42224" e_stop="44199"/>
            <exon e_start="45193" e_stop="45240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.882" e_score="1.000"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41512" e_stop="41571" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41572" i_stop="42223" i_length="652"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42224" e_stop="44199" e_length="1976"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.882">
            <gDNA_intron_boundary i_start="44200" i_stop="45192" i_length="993"/>
          </intron>
          <exon e_serial="3" e_score="0.562">
            <gDNA_exon_boundary e_start="45193" e_stop="45240" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41512" stop="41571"/>
              <exon start="42224" stop="42740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41519" stop="41571"/>
              <exon start="42224" stop="42696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41522" stop="41571"/>
              <exon start="42224" stop="42677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41530" stop="41571"/>
              <exon start="42224" stop="42737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42246" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42262" stop="42986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42303" stop="42706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42317" stop="42983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42401" stop="42964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42475" stop="43002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42484" stop="42966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42583" stop="43150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42625" stop="43178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="43388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42823" stop="43337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43068" stop="43506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43084" stop="43754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43138" stop="43525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43202" stop="43682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43230" stop="43865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43299" stop="43987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43300" stop="43583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43392" stop="44099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43430" stop="44024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43430" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43468" stop="43905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43702" stop="44199"/>
              <exon start="45193" stop="45240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTCTCCAAATTTTATCAATCTACAAGTTAGATTCCTCCTTCTGCAGATTATATCAG : GTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTCGTCCTTGATGATTTGTTGAGCAACTTTGGAGATTATA : AGAAGAAAAAGAAAACAGAATGAGCCAAGCTAAACACATTTATAAATG</gDNA_template>
            <first_frame> I  F  L  Q  I  L  S  I  Y  K  L  D  S  S  F  C  R  L  Y  Q  :  V  D  F  G  E  A  D  I  K  C  *  *  E  R  V  C  A  *  S  S  *  *  Q  P  Y  S  M  D  S  H  H  L  V  A  Y  G  V  T  G  S  D  L  S  Y  S  S  C  P  T  V  S  P  L  E  N  R  P  F  G  T  S  K  F  D  S  G  N  S  P  L  V  N  Y  F  N  S  E  T  F  N  T  V  S  D  Y  Q  E  Q  P  S  C  T  E  N  L  S  G  A  S  S  S  S  G  S  S  L  D  Y  N  Q  Y  F  H  R  P  S  P  S  E  D  H  L  P  E  A  P  Y  S  R  N  M  K  H  T  L  L  Q  L  E  S  A  L  M  G  P  D  K  E  A  M  K  S  S  P  Y  L  G  E  N  M  G  A  Q  T  S  G  Q  R  Y  K  A  W  N  K  E  A  Q  V  V  R  H  Q  Q  S  V  V  S  I  L  N  G  I  Q  S  D  K  R  D  N  V  M  E  D  L  P  L  Q  G  V  P  S  S  N  L  K  Q  L  L  I  A  C  A  R  A  L  A  E  N  K  L  D  D  F  E  I  L  V  A  K  A  R  S  V  V  S  V  T  G  D  P  I  Q  R  L  G  A  Y  I  V  E  G  L  V  A  R  K  E  L  S  G  T  T  I  Y  R  S  L  K  C  K  E  P  A  G  K  D  L  F  S  Y  M  Y  I  L  Y  E  I  C  P  Y  L  K  F  G  Y  M  A  A  N  G  A  I  V  E  A  C  R  N  E  D  R  I  H  I  I  D  F  Q  I  A  Q  G  T  Q  W  M  T  L  L  Q  A  L  A  A  R  P  G  G  A  P  Y  V  R  I  T  G  I  D  D  P  V  S  Q  Y  A  R  G  D  G  L  A  A  V  A  R  R  L  S  A  I  S  E  E  F  N  I  A  V  E  F  H  A  V  P  V  F  A  P  E  I  T  W  D  M  L  D  V  R  P  G  E  A  L  A  V  N  F  P  L  Q  L  H  H  T  P  D  E  S  V  D  V  N  N  P  R  D  G  L  I  R  M  I  K  S  L  S  P  K  I  V  T  L  V  E  Q  E  S  N  T  N  T  A  P  F  L  P  R  F  V  E  A  L  D  Y  Y  H  A  M  F  E  S  I  D  V  T  L  L  R  D  M  K  E  R  I  N  V  E  Q  H  C  L  A  R  D  I  V  N  V  I  A  C  E  G  K  E  R  V  E  R  H  E  L  L  G  K  W  K  S  R  F  M  M  A  G  F  Q  Q  Y  P  L  S  S  Y  V  N  S  V  I  K  D  L  M  K  R  Y  S  E  H  Y  T  L  V  E  K  D  G  A  M  L  L  G  W  K  E  R  N  L  V  S  A  S  A  W  F  *  R  V  T  V  H  Y  V  E  T  D  G  *  P  S  F  L  L  L  N  Q  T  I  G  L  I  K  *  L  Y  S  C  Y  V  V  S  I  F  *  N  F  S  C  L  F  F  K  L  S  F  D  I  I  C  *  N  L  *  T  I  I  S  R  P  *  *  F  V  E  Q  L  W  R  L  * :   E  E  K  E  N  R  M  S  Q  A  K  H  I  Y  K   </first_frame>
            <second_frame>  F  F  S  K  F  Y  Q  S  T  S  *  I  P  P  S  A  D  Y  I  R :   W  I  S  V  K  Q  I  L  S  V  S  E  K  E  F  A  H  R  A  A  N  D  S  R  I  V  W  T  R  T  I  W  L  L  M  V  *  P  V  V  I  C  R  I  L  H  A  L  L  L  V  L  *  R  I  D  H  L  V  H  R  N  L  I  Q  E  I  R  H  L  *  T  I  L  T  L  R  P  S  T  Q  *  V  I  T  R  S  S  P  A  V  Q  R  I  F  Q  V  L  V  L  Q  V  V  P  H  W  I  I  T  N  I  S  I  D  Q  A  P  R  K  I  I  F  Q  K  L  L  T  V  G  T  *  N  I  L  C  C  S  W  S  L  L  *  W  G  Q  T  K  R  Q  *  N  P  A  L  I  L  V  K  I  W  G  H  K  H  Q  V  R  G  I  K  R  G  T  R  K  P  K  L  C  V  I  N  N  Q  *  F  Q  S  L  M  E  F  K  V  I  S  E  T  M  *  W  R  T  C  P  C  R  V  F  R  L  A  I  *  S  S  C  L  *  H  A  P  E  L  L  L  K  T  S  *  M  I  L  K  Y  W  L  L  R  Q  G  V  L  C  P  L  L  E  I  P  S  S  V  L  V  L  T  L  *  K  A  S  *  Q  E  R  S  Y  L  E  L  P  Y  T  G  V  *  S  V  R  S  R  L  V  R  T  C  S  P  T  C  I  S  S  M  K  Y  V  L  T  *  S  S  A  T  W  L  Q  M  V  P  *  *  K  H  A  E  M  K  I  A  S  T  L  *  T  S  K  L  H  R  G  P  N  G  *  L  S  Y  K  L  L  Q  H  D  P  V  V  P  P  T  Y  V  L  Q  E  L  M  I  Q  F  H  S  T  L  G  E  M  D  W  L  Q  L  P  D  G  Y  Q  Q  F  L  R  N  S  T  L  L  L  S  F  M  Q  C  Q  F  L  L  R  K  S  L  G  I  C  L  M  *  G  L  V  R  L  W  L  *  T  F  L  C  N  F  T  T  P  L  M  R  A  L  T  *  I  T  L  E  M  V  S  L  G  *  *  S  R  L  A  P  R  *  S  L  W  W  S  K  N  Q  T  R  T  Q  L  H  F  S  L  G  L  *  K  L  *  I  T  T  M  Q  C  L  S  P  *  M  *  P  Y  *  G  T  *  R  S  G  S  M  W  N  S  T  V  W  L  G  I  *  *  M  S  *  H  V  R  A  R  K  E  *  N  V  T  S  Y  W  G  S  G  N  P  G  S  *  W  Q  V  F  S  N  I  L  *  A  L  M  *  I  Q  *  L  R  T  S  *  S  V  T  R  S  I  I  H  W  W  R  K  T  E  L  C  C  W  G  G  R  S  G  I  *  S  L  R  L  L  G  F  N  E  L  L  F  I  M  W  K  Q  M  V  S  L  L  F  Y  Y  L  T  R  Q  *  D  *  S  S  N  Y  T  H  V  M  *  F  Q  F  S  E  I  L  V  V  Y  F  S  S  Y  R  L  I  L  F  V  K  T  Y  K  Q  L  Y  L  V  L  D  D  L  L  S  N  F  G  D  Y   : K  K  K  K  K  T  E  *  A  K  L  N  T  F  I  N  </second_frame>
            <third_frame>   F  S  P  N  F  I  N  L  Q  V  R  F  L  L  L  Q  I  I  S   : G  G  F  R  *  S  R  Y  *  V  L  V  R  K  S  L  R  I  E  Q  L  M  T  A  V  *  Y  G  L  A  P  F  G  C  L  W  C  D  R  *  *  F  V  V  F  F  M  P  Y  C  *  S  S  R  E  *  T  I  W  Y  I  E  I  *  F  R  K  F  A  T  C  E  L  F  *  L  *  D  L  Q  H  S  K  *  L  P  G  A  A  Q  L  Y  R  E  S  F  R  C  *  F  F  K  W  F  L  T  G  L  *  P  I  F  P  S  T  K  P  L  G  R  S  S  S  R  S  S  L  Q  S  E  H  E  T  Y  S  A  A  V  G  V  C  F  N  G  A  R  Q  R  G  N  E  I  Q  P  L  S  W  *  K  Y  G  G  T  N  I  R  S  E  V  *  S  V  E  Q  G  S  P  S  C  A  S  S  T  I  S  S  F  N  P  *  W  N  S  K  *  *  A  R  Q  C  N  G  G  L  A  L  A  G  C  S  V  *  Q  S  E  A  A  A  Y  S  M  R  Q  S  S  C  *  K  Q  A  R  *  F  *  N  T  G  C  *  G  K  E  C  C  V  R  Y  W  R  S  H  P  A  S  W  C  L  H  C  R  R  P  R  S  K  K  G  V  I  W  N  Y  H  I  Q  E  F  K  V  *  G  A  G  W  *  G  L  V  L  L  H  V  Y  P  L  *  N  M  S  L  P  K  V  R  L  H  G  C  K  W  C  H  S  R  S  M  Q  K  *  R  S  H  P  H  Y  R  L  P  N  C  T  G  D  P  M  D  D  S  L  T  S  S  C  S  T  T  R  W  C  P  L  R  T  Y  Y  R  N  *  *  S  S  F  T  V  R  S  G  R  W  I  G  C  S  C  Q  T  A  I  S  N  F  *  G  I  Q  H  C  C  *  V  S  C  S  A  S  F  C  S  G  N  H  L  G  Y  A  *  C  K  A  W  *  G  S  G  C  K  L  S  F  A  T  S  P  H  P  *  *  E  R  *  R  E  *  P  *  R  W  S  H  *  D  D  K  V  A  *  P  Q  D  S  H  F  G  G  A  R  I  K  H  E  H  S  S  I  S  P  *  V  C  R  S  S  R  L  L  P  C  N  V  *  V  H  R  C  D  P  T  K  G  H  E  G  A  D  Q  C  G  T  A  L  F  G  *  G  Y  S  E  C  H  S  M  *  G  Q  G  K  S  R  T  S  R  A  I  G  E  V  E  I  Q  V  H  D  G  R  F  S  A  I  S  F  E  L  L  C  E  F  S  D  *  G  P  H  E  A  L  L  G  A  L  Y  T  G  G  E  R  R  S  Y  A  V  G  V  E  G  A  E  S  S  L  C  V  C  L  V  L  T  S  Y  C  S  L  C  G  N  R  W  L  A  F  F  F  I  T  *  P  D  N  R  I  D  Q  V  I  I  L  M  L  C  S  F  N  F  L  K  F  *  L  F  I  F  Q  V  I  V  *  Y  Y  L  L  K  L  I  N  N  Y  I  S  S  L  M  I  C  *  A  T  L  E  I  I  :  R  R  K  R  K  Q  N  E  P  S  *  T  H  L  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42290" stop="43978"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1686</number_coding_nucleotides>
                  <number_encoded_amino_acids>562</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPYSMDSHHLVAYGVTGSDLSYSSCPTVSPLENRPFGTSKFDSGNSPLVNYFNSETFNTVSDYQEQPSCTENLSGASSSSGSSLDYNQYFHRPSPSEDHLPEAPYSRNMKHTLLQLESALMGPDKEAMKSSPYLGENMGAQTSGQRYKAWNKEAQVVRHQQSVVSILNGIQSDKRDNVMEDLPLQGVPSSNLKQLLIACARALAENKLDDFEILVAKARSVVSVTGDPIQRLGAYIVEGLVARKELSGTTIYRSLKCKEPAGKDLFSYMYILYEICPYLKFGYMAANGAIVEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQYARGDGLAAVARRLSAISEEFNIAVEFHAVPVFAPEITWDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLIRMIKSLSPKIVTLVEQESNTNTAPFLPRFVEALDYYHAMFESIDVTLLRDMKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFQQYPLSSYVNSVIKDLMKRYSEHYTLVEKDGAMLLGWKERNLVSASAWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42220" e_stop="44185"/>
            <exon e_start="45193" e_stop="45207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.882" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42220" e_stop="44185" e_length="1966"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.882">
            <gDNA_intron_boundary i_start="44186" i_stop="45192" i_length="1007"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="45193" e_stop="45207" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42220" stop="42485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42246" stop="42624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42262" stop="42986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42303" stop="42706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42317" stop="42983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42401" stop="42964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42475" stop="43002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42484" stop="42966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42583" stop="43150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42625" stop="43178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42709" stop="43388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42823" stop="43337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43068" stop="43506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43084" stop="43754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43138" stop="43525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43202" stop="43682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43230" stop="43865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43299" stop="43987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43300" stop="43583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43392" stop="44099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43422" stop="43854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43430" stop="44024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43430" stop="43914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43468" stop="43905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43659" stop="44185"/>
              <exon start="45193" stop="45207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGGTGGATTTCGGTGAAGCAGATATTAAGTGTTAGTGAGAAAGAGTTTGCGCATAGAGCAGCTAATGACAGCCGTATAGTATGGACTCGCACCATTTGGTTGCTTATGGTGTGACCGGTAGTGATTTGTCGTATTCTTCATGCCCTACTGTTAGTCCTCTAGAGAATAGACCATTTGGTACATCGAAATTTGATTCAGGAAATTCGCCACTTGTGAACTATTTTAACTCTGAGACCTTCAACACAGTAAGTGATTACCAGGAGCAGCCCAGCTGTACAGAGAATCTTTCAGGTGCTAGTTCTTCAAGTGGTTCCTCACTGGATTATAACCAATATTTCCATCGACCAAGCCCCTCGGAAGATCATCTTCCAGAAGCTCCTTACAGTCGGAACATGAAACATACTCTGCTGCAGTTGGAGTCTGCTTTAATGGGGCCAGACAAAGAGGCAATGAAATCCAGCCCTTATCTTGGTGAAAATATGGGGGCACAAACATCAGGTCAGAGGTATAAAGCGTGGAACAAGGAAGCCCAAGTTGTGCGTCATCAACAATCAGTAGTTTCAATCCTTAATGGAATTCAAAGTGATAAGCGAGACAATGTAATGGAGGACTTGCCCTTGCAGGGTGTTCCGTCTAGCAATCTGAAGCAGCTGCTTATAGCATGCGCCAGAGCTCTTGCTGAAAACAAGCTAGATGATTTTGAAATACTGGTTGCTAAGGCAAGGAGTGTTGTGTCCGTTACTGGAGATCCCATCCAGCGTCTTGGTGCTTACATTGTAGAAGGCCTCGTAGCAAGAAAGGAGTTATCTGGAACTACCATATACAGGAGTTTAAAGTGTAAGGAGCCGGCTGGTAAGGACTTGTTCTCCTACATGTATATCCTCTATGAAATATGTCCTTACCTAAAGTTCGGCTACATGGCTGCAAATGGTGCCATAGTAGAAGCATGCAGAAATGAAGATCGCATCCACATTATAGACTTCCAAATTGCACAGGGGACCCAATGGATGACTCTCTTACAAGCTCTTGCAGCACGACCCGGTGGTGCCCCCTACGTACGTATTACAGGAATTGATGATCCAGTTTCACAGTACGCTCGGGGAGATGGATTGGCTGCAGTTGCCAGACGGCTATCAGCAATTTCTGAGGAATTCAACATTGCTGTTGAGTTTCATGCAGTGCCAGTTTTTGCTCCGGAAATCACTTGGGATATGCTTGATGTAAGGCCTGGTGAGGCTCTGGCTGTAAACTTTCCTTTGCAACTTCACCACACCCCTGATGAGAGCGTTGACGTGAATAACCCTAGAGATGGTCTCATTAGGATGATAAAGTCGCTTAGCCCCAAGATAGTCACTTTGGTGGAGCAAGAATCAAACACGAACACAGCTCCATTTCTCCCTAGGTTTGTAGAAGCTCTAGATTACTACCATGCAATGTTTGAGTCCATAGATGTGACCCTACTAAGGGACATGAAGGAGCGGATCAATGTGGAACAGCACTGTTTGGCTAGGGATATAGTGAATGTCATAGCATGTGAGGGCAAGGAAAGAGTAGAACGTCACGAGCTATTGGGGAAGTGGAAATCCAGGTTCATGATGGCAGGTTTTCAGCAATATCCTTTGAGCTCTTATGTGAATTCAGTGATTAAGGACCTCATGAAGCGTTACTCGGAGCATTATACACTGGTGGAGAAAGACGGAGCTATGCTGTTGGGGTGGAAGGAGCGGAATCTAGTCTCTGCGTCTGCTTGGTTTTAACGAGTTACTGTTCATTATGTGGAAACAGATGGTTAGCCTTCTTTTTTATTACTTAACCAGACAATAGGATTGATCAAGTAATTATACTCATGTTATGTAGTTTCAATTTTCTGAAATTTTAGTTGTTTATTTTTCAAGTTATCGTTTGATATTATTTGTTAAAACTTATAAACAATTATATCTCGTCCTTGATGATTTGTTGAGCAA : AGAAGAAAAAGAAAA</gDNA_template>
            <first_frame> T  G  G  F  R  *  S  R  Y  *  V  L  V  R  K  S  L  R  I  E  Q  L  M  T  A  V  *  Y  G  L  A  P  F  G  C  L  W  C  D  R  *  *  F  V  V  F  F  M  P  Y  C  *  S  S  R  E  *  T  I  W  Y  I  E  I  *  F  R  K  F  A  T  C  E  L  F  *  L  *  D  L  Q  H  S  K  *  L  P  G  A  A  Q  L  Y  R  E  S  F  R  C  *  F  F  K  W  F  L  T  G  L  *  P  I  F  P  S  T  K  P  L  G  R  S  S  S  R  S  S  L  Q  S  E  H  E  T  Y  S  A  A  V  G  V  C  F  N  G  A  R  Q  R  G  N  E  I  Q  P  L  S  W  *  K  Y  G  G  T  N  I  R  S  E  V  *  S  V  E  Q  G  S  P  S  C  A  S  S  T  I  S  S  F  N  P  *  W  N  S  K  *  *  A  R  Q  C  N  G  G  L  A  L  A  G  C  S  V  *  Q  S  E  A  A  A  Y  S  M  R  Q  S  S  C  *  K  Q  A  R  *  F  *  N  T  G  C  *  G  K  E  C  C  V  R  Y  W  R  S  H  P  A  S  W  C  L  H  C  R  R  P  R  S  K  K  G  V  I  W  N  Y  H  I  Q  E  F  K  V  *  G  A  G  W  *  G  L  V  L  L  H  V  Y  P  L  *  N  M  S  L  P  K  V  R  L  H  G  C  K  W  C  H  S  R  S  M  Q  K  *  R  S  H  P  H  Y  R  L  P  N  C  T  G  D  P  M  D  D  S  L  T  S  S  C  S  T  T  R  W  C  P  L  R  T  Y  Y  R  N  *  *  S  S  F  T  V  R  S  G  R  W  I  G  C  S  C  Q  T  A  I  S  N  F  *  G  I  Q  H  C  C  *  V  S  C  S  A  S  F  C  S  G  N  H  L  G  Y  A  *  C  K  A  W  *  G  S  G  C  K  L  S  F  A  T  S  P  H  P  *  *  E  R  *  R  E  *  P  *  R  W  S  H  *  D  D  K  V  A  *  P  Q  D  S  H  F  G  G  A  R  I  K  H  E  H  S  S  I  S  P  *  V  C  R  S  S  R  L  L  P  C  N  V  *  V  H  R  C  D  P  T  K  G  H  E  G  A  D  Q  C  G  T  A  L  F  G  *  G  Y  S  E  C  H  S  M  *  G  Q  G  K  S  R  T  S  R  A  I  G  E  V  E  I  Q  V  H  D  G  R  F  S  A  I  S  F  E  L  L  C  E  F  S  D  *  G  P  H  E  A  L  L  G  A  L  Y  T  G  G  E  R  R  S  Y  A  V  G  V  E  G  A  E  S  S  L  C  V  C  L  V  L  T  S  Y  C  S  L  C  G  N  R  W  L  A  F  F  F  I  T  *  P  D  N  R  I  D  Q  V  I  I  L  M  L  C  S  F  N  F  L  K  F  *  L  F  I  F  Q  V  I  V  *  Y  Y  L  L  K  L  I  N  N  Y  I  S  S  L  M  I  C  *  A   : K  K  K  K  K  </first_frame>
            <second_frame>  Q  V  D  F  G  E  A  D  I  K  C  *  *  E  R  V  C  A  *  S  S  *  *  Q  P  Y  S  M  D  S  H  H  L  V  A  Y  G  V  T  G  S  D  L  S  Y  S  S  C  P  T  V  S  P  L  E  N  R  P  F  G  T  S  K  F  D  S  G  N  S  P  L  V  N  Y  F  N  S  E  T  F  N  T  V  S  D  Y  Q  E  Q  P  S  C  T  E  N  L  S  G  A  S  S  S  S  G  S  S  L  D  Y  N  Q  Y  F  H  R  P  S  P  S  E  D  H  L  P  E  A  P  Y  S  R  N  M  K  H  T  L  L  Q  L  E  S  A  L  M  G  P  D  K  E  A  M  K  S  S  P  Y  L  G  E  N  M  G  A  Q  T  S  G  Q  R  Y  K  A  W  N  K  E  A  Q  V  V  R  H  Q  Q  S  V  V  S  I  L  N  G  I  Q  S  D  K  R  D  N  V  M  E  D  L  P  L  Q  G  V  P  S  S  N  L  K  Q  L  L  I  A  C  A  R  A  L  A  E  N  K  L  D  D  F  E  I  L  V  A  K  A  R  S  V  V  S  V  T  G  D  P  I  Q  R  L  G  A  Y  I  V  E  G  L  V  A  R  K  E  L  S  G  T  T  I  Y  R  S  L  K  C  K  E  P  A  G  K  D  L  F  S  Y  M  Y  I  L  Y  E  I  C  P  Y  L  K  F  G  Y  M  A  A  N  G  A  I  V  E  A  C  R  N  E  D  R  I  H  I  I  D  F  Q  I  A  Q  G  T  Q  W  M  T  L  L  Q  A  L  A  A  R  P  G  G  A  P  Y  V  R  I  T  G  I  D  D  P  V  S  Q  Y  A  R  G  D  G  L  A  A  V  A  R  R  L  S  A  I  S  E  E  F  N  I  A  V  E  F  H  A  V  P  V  F  A  P  E  I  T  W  D  M  L  D  V  R  P  G  E  A  L  A  V  N  F  P  L  Q  L  H  H  T  P  D  E  S  V  D  V  N  N  P  R  D  G  L  I  R  M  I  K  S  L  S  P  K  I  V  T  L  V  E  Q  E  S  N  T  N  T  A  P  F  L  P  R  F  V  E  A  L  D  Y  Y  H  A  M  F  E  S  I  D  V  T  L  L  R  D  M  K  E  R  I  N  V  E  Q  H  C  L  A  R  D  I  V  N  V  I  A  C  E  G  K  E  R  V  E  R  H  E  L  L  G  K  W  K  S  R  F  M  M  A  G  F  Q  Q  Y  P  L  S  S  Y  V  N  S  V  I  K  D  L  M  K  R  Y  S  E  H  Y  T  L  V  E  K  D  G  A  M  L  L  G  W  K  E  R  N  L  V  S  A  S  A  W  F  *  R  V  T  V  H  Y  V  E  T  D  G  *  P  S  F  L  L  L  N  Q  T  I  G  L  I  K  *  L  Y  S  C  Y  V  V  S  I  F  *  N  F  S  C  L  F  F  K  L  S  F  D  I  I  C  *  N  L  *  T  I  I  S  R  P  *  *  F  V  E  Q  :  R  R  K  R  K </second_frame>
            <third_frame>   R  W  I  S  V  K  Q  I  L  S  V  S  E  K  E  F  A  H  R  A  A  N  D  S  R  I  V  W  T  R  T  I  W  L  L  M  V  *  P  V  V  I  C  R  I  L  H  A  L  L  L  V  L  *  R  I  D  H  L  V  H  R  N  L  I  Q  E  I  R  H  L  *  T  I  L  T  L  R  P  S  T  Q  *  V  I  T  R  S  S  P  A  V  Q  R  I  F  Q  V  L  V  L  Q  V  V  P  H  W  I  I  T  N  I  S  I  D  Q  A  P  R  K  I  I  F  Q  K  L  L  T  V  G  T  *  N  I  L  C  C  S  W  S  L  L  *  W  G  Q  T  K  R  Q  *  N  P  A  L  I  L  V  K  I  W  G  H  K  H  Q  V  R  G  I  K  R  G  T  R  K  P  K  L  C  V  I  N  N  Q  *  F  Q  S  L  M  E  F  K  V  I  S  E  T  M  *  W  R  T  C  P  C  R  V  F  R  L  A  I  *  S  S  C  L  *  H  A  P  E  L  L  L  K  T  S  *  M  I  L  K  Y  W  L  L  R  Q  G  V  L  C  P  L  L  E  I  P  S  S  V  L  V  L  T  L  *  K  A  S  *  Q  E  R  S  Y  L  E  L  P  Y  T  G  V  *  S  V  R  S  R  L  V  R  T  C  S  P  T  C  I  S  S  M  K  Y  V  L  T  *  S  S  A  T  W  L  Q  M  V  P  *  *  K  H  A  E  M  K  I  A  S  T  L  *  T  S  K  L  H  R  G  P  N  G  *  L  S  Y  K  L  L  Q  H  D  P  V  V  P  P  T  Y  V  L  Q  E  L  M  I  Q  F  H  S  T  L  G  E  M  D  W  L  Q  L  P  D  G  Y  Q  Q  F  L  R  N  S  T  L  L  L  S  F  M  Q  C  Q  F  L  L  R  K  S  L  G  I  C  L  M  *  G  L  V  R  L  W  L  *  T  F  L  C  N  F  T  T  P  L  M  R  A  L  T  *  I  T  L  E  M  V  S  L  G  *  *  S  R  L  A  P  R  *  S  L  W  W  S  K  N  Q  T  R  T  Q  L  H  F  S  L  G  L  *  K  L  *  I  T  T  M  Q  C  L  S  P  *  M  *  P  Y  *  G  T  *  R  S  G  S  M  W  N  S  T  V  W  L  G  I  *  *  M  S  *  H  V  R  A  R  K  E  *  N  V  T  S  Y  W  G  S  G  N  P  G  S  *  W  Q  V  F  S  N  I  L  *  A  L  M  *  I  Q  *  L  R  T  S  *  S  V  T  R  S  I  I  H  W  W  R  K  T  E  L  C  C  W  G  G  R  S  G  I  *  S  L  R  L  L  G  F  N  E  L  L  F  I  M  W  K  Q  M  V  S  L  L  F  Y  Y  L  T  R  Q  *  D  *  S  S  N  Y  T  H  V  M  *  F  Q  F  S  E  I  L  V  V  Y  F  S  S  Y  R  L  I  L  F  V  K  T  Y  K  Q  L  Y  L  V  L  D  D  L  L  S  K :   E  E  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42290" stop="43978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1686</number_coding_nucleotides>
                  <number_encoded_amino_acids>562</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPYSMDSHHLVAYGVTGSDLSYSSCPTVSPLENRPFGTSKFDSGNSPLVNYFNSETFNTVSDYQEQPSCTENLSGASSSSGSSLDYNQYFHRPSPSEDHLPEAPYSRNMKHTLLQLESALMGPDKEAMKSSPYLGENMGAQTSGQRYKAWNKEAQVVRHQQSVVSILNGIQSDKRDNVMEDLPLQGVPSSNLKQLLIACARALAENKLDDFEILVAKARSVVSVTGDPIQRLGAYIVEGLVARKELSGTTIYRSLKCKEPAGKDLFSYMYILYEICPYLKFGYMAANGAIVEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQYARGDGLAAVARRLSAISEEFNIAVEFHAVPVFAPEITWDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLIRMIKSLSPKIVTLVEQESNTNTAPFLPRFVEALDYYHAMFESIDVTLLRDMKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFQQYPLSSYVNSVIKDLMKRYSEHYTLVEKDGAMLLGWKERNLVSASAWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47098" PGL_stop="45136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46986" e_stop="46453"/>
            <exon e_start="45729" e_stop="45136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.994"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="46986" e_stop="46453" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="45729" e_stop="45136" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46986" stop="46453"/>
              <exon start="45729" stop="45403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46965" stop="46608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46940" stop="46453"/>
              <exon start="45729" stop="45403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46937" stop="46453"/>
              <exon start="45729" stop="45320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46925" stop="46453"/>
              <exon start="45729" stop="45398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46923" stop="46453"/>
              <exon start="45729" stop="45380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46920" stop="46453"/>
              <exon start="45729" stop="45402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46919" stop="46453"/>
              <exon start="45729" stop="45396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46918" stop="46453"/>
              <exon start="45729" stop="45310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46918" stop="46453"/>
              <exon start="45729" stop="45479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46917" stop="46453"/>
              <exon start="45729" stop="45393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46914" stop="46453"/>
              <exon start="45729" stop="45485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46914" stop="46453"/>
              <exon start="45729" stop="45508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46913" stop="46453"/>
              <exon start="45729" stop="45642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46912" stop="46453"/>
              <exon start="45729" stop="45602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46911" stop="46453"/>
              <exon start="45729" stop="45566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46911" stop="46453"/>
              <exon start="45729" stop="45662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46911" stop="46479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46910" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46908" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46908" stop="46453"/>
              <exon start="45729" stop="45405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46906" stop="46490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46903" stop="46453"/>
              <exon start="45729" stop="45312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46903" stop="46453"/>
              <exon start="45729" stop="45393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46898" stop="46453"/>
              <exon start="45729" stop="45397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46898" stop="46453"/>
              <exon start="45729" stop="45657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46898" stop="46488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46897" stop="46453"/>
              <exon start="45729" stop="45668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46897" stop="46467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46896" stop="46453"/>
              <exon start="45729" stop="45544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46896" stop="46453"/>
              <exon start="45729" stop="45596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46894" stop="46453"/>
              <exon start="45729" stop="45355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46894" stop="46453"/>
              <exon start="45729" stop="45601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46894" stop="46456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46893" stop="46453"/>
              <exon start="45729" stop="45319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46892" stop="46453"/>
              <exon start="45729" stop="45414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46891" stop="46534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46889" stop="46453"/>
              <exon start="45729" stop="45550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46888" stop="46453"/>
              <exon start="45729" stop="45281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46888" stop="46453"/>
              <exon start="45729" stop="45615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46887" stop="46453"/>
              <exon start="45729" stop="45673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46883" stop="46453"/>
              <exon start="45729" stop="45497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46883" stop="46516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46881" stop="46453"/>
              <exon start="45729" stop="45608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46879" stop="46453"/>
              <exon start="45729" stop="45624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46855" stop="46453"/>
              <exon start="45729" stop="45373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46806" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553657" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46783" stop="46453"/>
              <exon start="45729" stop="45209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46782" stop="46453"/>
              <exon start="45729" stop="45338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46754" stop="46453"/>
              <exon start="45729" stop="45506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46737" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46697" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46685" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46628" stop="46453"/>
              <exon start="45729" stop="45471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46572" stop="46453"/>
              <exon start="45729" stop="45209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46572" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45729" stop="45297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45685" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45660" stop="45284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45636" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45620" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45619" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45600" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45576" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45553" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45537" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45520" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45520" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45422" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTACGGCCCTCCTCCCTCTAAAAACCCTAACTCCCTTTCTTCTTTATTCCATTTCTTCCTCTATTCCCAAAAACTTAGACAGAAGGCGCCGAAATGGGTCGTGTGATCAGAGCACAACGTAAGGGAGCAGGCTCCGTCTTCAAATCTCACACTCATCACCGCAAGGGACCTGCAAGGTTCCGTTCACTTGATTTCGGTGAACGTAATGGTTATCTCAAAGGTGTTGTTACAGAAATTATTCATGATCCAGGTAGGGGTGCACCATTGGCAAGGATGACATTCCGTCATCCTTTCCGTTACAAGCATCAGAAGGAGTTGTTCGTTGCTGCAGAAGGGATGTATACTGGTCAGTTTATTTACTGTGGGAAAAAAGCTAATCTAATGGTTGGTAATGTGCTTGCACTCAGATCTATCCCTGAAGGAGCTGTTGTTTGTAATGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG : GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCTGTTTTCTTTTTCTTCTCTGTTCAAGTGAAACATAATGACAGCTCAATCTCATTATGTTTCCCTTCAATTTTAA</gDNA_template>
            <first_frame> V  T  A  L  L  P  L  K  T  L  T  P  F  L  L  Y  S  I  S  S  S  I  P  K  N  L  D  R  R  R  R  N  G  S  C  D  Q  S  T  T  *  G  S  R  L  R  L  Q  I  S  H  S  S  P  Q  G  T  C  K  V  P  F  T  *  F  R  *  T  *  W  L  S  Q  R  C  C  Y  R  N  Y  S  *  S  R  *  G  C  T  I  G  K  D  D  I  P  S  S  F  P  L  Q  A  S  E  G  V  V  R  C  C  R  R  D  V  Y  W  S  V  Y  L  L  W  E  K  S  *  S  N  G  W  *  C  A  C  T  Q  I  Y  P  *  R  S  C  C  L  *  C  *  A  *  S  W  *  P  W  C  F  C  *  M  L  W  *  L  C  Y  C  Y  Q  S  *  P  *  *  R  N  N  *  :  D  *  A  S  I  W  I  Q  E  D  C  A  *  W  M  S  S  H  D  W  S  G  C  W  W  R  K  N  *  E  T  N  A  *  S  W  *  R  I  S  Q  I  P  C  *  E  E  L  L  A  *  G  S  W  C  C  Y  E  S  C  G  A  S  S  W  W  W  *  P  S  T  Y  W  S  C  Q  Y  C  A  S  *  C  T  T  W  A  K  G  W  S  Y  R  S  K  E  D  W  S  S  S  W  A  S  C  C  Y  C  C  Q  S  *  Q  G  L  R  Y  *  F  C  V  T  V  F  L  V  V  F  G  F  *  V  F  S  Y  C  H  L  Y  T  K  L  S  L  S  F  V  G  I  L  F  *  K  F  C  *  G  P  L  L  T  Q  L  C  H  L  *  M  C  L  A  W  L  I  L  F  S  F  S  S  L  F  K  *  N  I  M  T  A  Q  S  H  Y  V  S  L  Q  F  * </first_frame>
            <second_frame>  L  R  P  S  S  L  *  K  P  *  L  P  F  F  F  I  P  F  L  P  L  F  P  K  T  *  T  E  G  A  E  M  G  R  V  I  R  A  Q  R  K  G  A  G  S  V  F  K  S  H  T  H  H  R  K  G  P  A  R  F  R  S  L  D  F  G  E  R  N  G  Y  L  K  G  V  V  T  E  I  I  H  D  P  G  R  G  A  P  L  A  R  M  T  F  R  H  P  F  R  Y  K  H  Q  K  E  L  F  V  A  A  E  G  M  Y  T  G  Q  F  I  Y  C  G  K  K  A  N  L  M  V  G  N  V  L  A  L  R  S  I  P  E  G  A  V  V  C  N  V  E  H  K  V  G  D  R  G  V  F  A  R  C  S  G  D  Y  A  I  V  I  S  H  N  P  D  N  G  T  T  R :   I  K  L  P  S  G  S  K  K  I  V  P  S  G  C  R  A  M  I  G  Q  V  A  G  G  G  R  T  E  K  P  M  L  K  A  G  N  A  Y  H  K  Y  R  V  K  R  N  C  W  P  K  V  R  G  V  A  M  N  P  V  E  H  P  H  G  G  G  N  H  Q  H  I  G  H  A  S  T  V  R  R  D  A  P  P  G  Q  K  V  G  L  I  A  A  R  R  T  G  R  L  R  G  Q  A  A  A  T  A  A  K  A  D  K  A  *  D  I  S  F  V  L  L  F  S  L  L  C  L  D  F  E  Y  S  A  T  V  I  F  I  L  S  *  V  *  V  L  L  G  Y  Y  F  R  S  F  V  K  D  P  C  L  H  N  F  A  I  Y  K  C  V  *  L  G  S  F  C  F  L  F  L  L  C  S  S  E  T  *  *  Q  L  N  L  I  M  F  P  F  N  F   </second_frame>
            <third_frame>   Y  G  P  P  P  S  K  N  P  N  S  L  S  S  L  F  H  F  F  L  Y  S  Q  K  L  R  Q  K  A  P  K  W  V  V  *  S  E  H  N  V  R  E  Q  A  P  S  S  N  L  T  L  I  T  A  R  D  L  Q  G  S  V  H  L  I  S  V  N  V  M  V  I  S  K  V  L  L  Q  K  L  F  M  I  Q  V  G  V  H  H  W  Q  G  *  H  S  V  I  L  S  V  T  S  I  R  R  S  C  S  L  L  Q  K  G  C  I  L  V  S  L  F  T  V  G  K  K  L  I  *  W  L  V  M  C  L  H  S  D  L  S  L  K  E  L  L  F  V  M  L  S  I  K  L  V  T  V  V  F  L  L  D  A  L  V  I  M  L  L  L  S  V  I  T  L  I  T  E  Q  L   : G  L  S  F  H  L  D  P  R  R  L  C  L  V  D  V  E  P  *  L  V  R  L  L  V  E  E  E  L  R  N  Q  C  L  K  L  V  T  H  I  T  N  T  V  L  R  G  T  A  G  L  R  F  V  V  L  L  *  I  L  W  S  I  L  M  V  V  V  T  I  N  I  L  V  M  P  V  L  C  V  V  M  H  H  L  G  K  R  L  V  L  S  Q  Q  G  G  L  V  V  F  V  G  K  L  L  L  L  L  P  K  L  T  R  P  K  I  L  V  L  C  Y  C  F  P  C  C  V  W  I  L  S  I  Q  L  L  S  S  L  Y  *  V  K  F  K  F  C  W  D  I  I  L  E  V  L  L  R  T  L  A  Y  T  T  L  P  F  I  N  V  F  S  L  A  H  S  V  F  F  F  F  S  V  Q  V  K  H  N  D  S  S  I  S  L  C  F  P  S  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46907" stop="46453"/>
                    <exon start="45729" stop="45387"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEGAEMGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARMTFRHPFRYKHQKELFVAAEGMYTGQFIYCGKKANLMVGNVLALRSIPEGAVVCNVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47098" e_stop="47071"/>
            <exon e_start="46548" e_stop="46453"/>
            <exon e_start="45729" e_stop="45136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.813" acc_prob="0.000" e_score="0.571"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.969"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="47098" e_stop="47071" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.813" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47070" i_stop="46549" i_length="522"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="46548" e_stop="46453" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="46452" i_stop="45730" i_length="723"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="45729" e_stop="45136" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47098" stop="47071"/>
              <exon start="46548" stop="46453"/>
              <exon start="45729" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45729" stop="45297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45685" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45660" stop="45284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45636" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45620" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45619" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45600" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45576" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45553" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45537" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45520" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45520" stop="45214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45422" stop="45136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCTTGATCAACTCAAAATATAAAG : TGTTGAGCATAAAGTTGGTGACCGTGGTGTTTTTGCTAGATGCTCTGGTGATTATGCTATTGTTATCAGTCATAACCCTGATAACGGAACAACTAG : GATTAAGCTTCCATCTGGATCCAAGAAGATTGTGCCTAGTGGATGTCGAGCCATGATTGGTCAGGTTGCTGGTGGAGGAAGAACTGAGAAACCAATGCTTAAAGCTGGTAACGCATATCACAAATACCGTGTTAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTGGAGCATCCTCATGGTGGTGGTAACCATCAACATATTGGTCATGCCAGTACTGTGCGTCGTGATGCACCACCTGGGCAAAAGGTTGGTCTTATCGCAGCAAGGAGGACTGGTCGTCTTCGTGGGCAAGCTGCTGCTACTGCTGCCAAAGCTGACAAGGCCTAAGATATTAGTTTTGTGTTACTGTTTTCCTTGTTGTGTTTGGATTTTGAGTATTCAGCTACTGTCATCTTTATACTAAGTTAAGTTTAAGTTTTGTTGGGATATTATTTTAGAAGTTTTGTTAAGGACCCTTGCTTACACAACTTTGCCATTTATAAATGTGTTTAGCTTGGCTCATTCTGTTTTCTTTTTCTTCTCTGTTCAAGTGAAACATAATGACAGCTCAATCTCATTATGTTTCCCTTCAATTTTAA</gDNA_template>
            <first_frame> *  I  L  I  N  S  K  Y  K   : V  L  S  I  K  L  V  T  V  V  F  L  L  D  A  L  V  I  M  L  L  L  S  V  I  T  L  I  T  E  Q  L   : G  L  S  F  H  L  D  P  R  R  L  C  L  V  D  V  E  P  *  L  V  R  L  L  V  E  E  E  L  R  N  Q  C  L  K  L  V  T  H  I  T  N  T  V  L  R  G  T  A  G  L  R  F  V  V  L  L  *  I  L  W  S  I  L  M  V  V  V  T  I  N  I  L  V  M  P  V  L  C  V  V  M  H  H  L  G  K  R  L  V  L  S  Q  Q  G  G  L  V  V  F  V  G  K  L  L  L  L  L  P  K  L  T  R  P  K  I  L  V  L  C  Y  C  F  P  C  C  V  W  I  L  S  I  Q  L  L  S  S  L  Y  *  V  K  F  K  F  C  W  D  I  I  L  E  V  L  L  R  T  L  A  Y  T  T  L  P  F  I  N  V  F  S  L  A  H  S  V  F  F  F  F  S  V  Q  V  K  H  N  D  S  S  I  S  L  C  F  P  S  I  L  </first_frame>
            <second_frame>  E  S  *  S  T  Q  N  I  K  :  C  *  A  *  S  W  *  P  W  C  F  C  *  M  L  W  *  L  C  Y  C  Y  Q  S  *  P  *  *  R  N  N  *  :  D  *  A  S  I  W  I  Q  E  D  C  A  *  W  M  S  S  H  D  W  S  G  C  W  W  R  K  N  *  E  T  N  A  *  S  W  *  R  I  S  Q  I  P  C  *  E  E  L  L  A  *  G  S  W  C  C  Y  E  S  C  G  A  S  S  W  W  W  *  P  S  T  Y  W  S  C  Q  Y  C  A  S  *  C  T  T  W  A  K  G  W  S  Y  R  S  K  E  D  W  S  S  S  W  A  S  C  C  Y  C  C  Q  S  *  Q  G  L  R  Y  *  F  C  V  T  V  F  L  V  V  F  G  F  *  V  F  S  Y  C  H  L  Y  T  K  L  S  L  S  F  V  G  I  L  F  *  K  F  C  *  G  P  L  L  T  Q  L  C  H  L  *  M  C  L  A  W  L  I  L  F  S  F  S  S  L  F  K  *  N  I  M  T  A  Q  S  H  Y  V  S  L  Q  F  * </second_frame>
            <third_frame>   N  L  D  Q  L  K  I  *  S :   V  E  H  K  V  G  D  R  G  V  F  A  R  C  S  G  D  Y  A  I  V  I  S  H  N  P  D  N  G  T  T  R :   I  K  L  P  S  G  S  K  K  I  V  P  S  G  C  R  A  M  I  G  Q  V  A  G  G  G  R  T  E  K  P  M  L  K  A  G  N  A  Y  H  K  Y  R  V  K  R  N  C  W  P  K  V  R  G  V  A  M  N  P  V  E  H  P  H  G  G  G  N  H  Q  H  I  G  H  A  S  T  V  R  R  D  A  P  P  G  Q  K  V  G  L  I  A  A  R  R  T  G  R  L  R  G  Q  A  A  A  T  A  A  K  A  D  K  A  *  D  I  S  F  V  L  L  F  S  L  L  C  L  D  F  E  Y  S  A  T  V  I  F  I  L  S  *  V  *  V  L  L  G  Y  Y  F  R  S  F  V  K  D  P  C  L  H  N  F  A  I  Y  K  C  V  *  L  G  S  F  C  F  L  F  L  L  C  S  S  E  T  *  *  Q  L  N  L  I  M  F  P  F  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47072" stop="47071"/>
                    <exon start="46548" stop="46453"/>
                    <exon start="45729" stop="45387"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVEHKVGDRGVFARCSGDYAIVISHNPDNGTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="52164" PGL_stop="48715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52164" e_stop="52142"/>
            <exon e_start="52032" e_stop="51881"/>
            <exon e_start="51791" e_stop="51709"/>
            <exon e_start="51521" e_stop="51395"/>
            <exon e_start="50776" e_stop="50685"/>
            <exon e_start="50374" e_stop="50288"/>
            <exon e_start="50194" e_stop="50070"/>
            <exon e_start="49971" e_stop="49911"/>
            <exon e_start="49807" e_stop="49754"/>
            <exon e_start="49674" e_stop="49597"/>
            <exon e_start="49507" e_stop="49426"/>
            <exon e_start="49232" e_stop="49093"/>
            <exon e_start="49005" e_stop="48715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.397" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.976"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
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              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52013" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52009" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51996" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51992" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51971" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51968" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51934" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51934" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51934" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51893" stop="51881"/>
              <exon start="51791" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51769" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51501" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51487" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51487" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51478" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51470" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51458" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51458" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50762" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50372" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50347" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49093"/>
              <exon start="49005" stop="48970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50346" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50302" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50184" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50181" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49796" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49093"/>
              <exon start="49005" stop="48886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49121" stop="49093"/>
              <exon start="49005" stop="48715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACATATATATTTTTTAATAAA : GATGATGATGGTTACAAAATCTGTTCAACTTGTTGTCTTACTTGTTTGCTGTTTGACCATCATCACAATTCAATGTGCAAATGCAACACAAAACCCAAATTTATTTAATGTCGAACCAACAATAGTTCATAGTGCTGCGTCAAAGGGAGCAG : TGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCC : GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG : ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA : ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAAT : GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT : CAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA : GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG : TGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAG : ACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG : AAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCCTTTTTCGCCGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTG : TTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAACTTATTATTATCATGAATAGACTAATCTTCATTTATTCCAAGAAAAGTTATCAAAAATATTTGATTGTTAGACAATCAAATTCTCTATTGTATCATGTAAAAGATTTTCCCTATGTATCCAATCCGGTGACAAAGAGGTCCCTTTGACAAAATTAATAAAAATTTCTATTGTGACACTGAATTATTAC</gDNA_template>
            <first_frame> Q  H  I  Y  F  L  I  K :   M  M  M  V  T  K  S  V  Q  L  V  V  L  L  V  C  C  L  T  I  I  T  I  Q  C  A  N  A  T  Q  N  P  N  L  F  N  V  E  P  T  I  V  H  S  A  A  S  K  G  A   : V  C  L  D  G  S  P  P  A  Y  Y  F  E  P  G  F  G  D  G  A  E  N  W  I  F  H  L  S  :  G  G  A  W  C  I  N  V  T  D  C  Q  K  R  A  E  G  S  N  G  S  S  K  R  M  G  P  L  Q  F  Q  G  I  H  S  K  N  N  T  Q  N  P   : D  F  Y  N  W  N  K  V  V  V  A  Y  C  D  G  G  S  F  I  G  D  S  E  Y  I  D  P  S  N  N  R  :  T  K  D  L  Q  F  R  G  Q  K  I  F  Y  T  V  L  E  E  V  L  E  K  G  L  K  N  A  K  N  :  A  I  L  A  G  S  S  A  G  G  Y  P  A  I  L  Y  C  D  Y  F  R  D  S  L  P  I  N  S  R  V  K  C  L  V  D  S  G  Y  F  V  H  F :   K  N  P  V  L  E  R  F  W  T  W  R  F  S  G  V  A  A  L  Q  :  G  A  A  K  T  L  P  K  S  C  T  S  K  M  K  A  E  L  :  C  L  Y  S  E  N  I  Q  Q  Y  T  K  T  P  F  F  L  H  M  S  A  F  D  N  I  E  :  T  Q  Y  T  L  G  D  E  K  Y  K  A  V  D  E  G  L  G  P  E  S  M  N  A  S  L  R   : E  I  R  S  V  F  L  N  A  I  P  K  R  D  N  P  K  H  R  G  A  F  I  D  A  M  H  H  H  T  S  L  F  R  R  W  S  L  E  V  A  L  E  I  D  N  V  :  L  A  P  I  A  F  A  D  W  Y  F  D  R  K  Y  Y  Y  L  V  D  E  K  H  T  M  P  I  K  N  T  I  K  N  T  T  Y  Y  Y  H  E  *  T  N  L  H  L  F  Q  E  K  L  S  K  I  F  D  C  *  T  I  K  F  S  I  V  S  C  K  R  F  S  L  C  I  Q  S  G  D  K  E  V  P  L  T  K  L  I  K  I  S  I  V  T  L  N  Y  Y </first_frame>
            <second_frame>  N  I  Y  I  F  *  *   : R  *  *  W  L  Q  N  L  F  N  L  L  S  Y  L  F  A  V  *  P  S  S  Q  F  N  V  Q  M  Q  H  K  T  Q  I  Y  L  M  S  N  Q  Q  *  F  I  V  L  R  Q  R  E  Q  :  C  A  W  M  D  H  L  Q  H  T  I  L  N  Q  D  L  E  M  E  L  K  I  G  F  F  I  Y  P :   E  E  H  G  V  *  M  S  Q  I  A  K  N  V  P  K  A  Q  M  V  H  Q  N  E  W  V  H  Y  N  F  K  E  F  T  V  R  I  I  P  K  I  Q  :  I  F  I  I  G  T  K  *  L  L  H  T  A  M  V  D  R  S  L  E  I  L  N  T  L  I  Q  V  I  I  E :   L  K  I  F  S  L  E  G  K  R  F  F  T  Q  Y  L  R  R  C  W  K  K  D  *  R  M  P  K  M :   Q  S  *  L  A  V  L  Q  E  D  I  Q  Q  Y  Y  I  V  I  I  S  V  I  H  C  Q  L  I  L  E  *  S  V  *  L  I  L  A  T  L  F  I   : S  R  I  L  C  S  K  D  F  G  H  G  D  F  Q  E  L  P  L  Y  K :   E  L  P  K  R  Y  Q  N  H  A  L  Q  K  *  K  Q  N  C :   A  S  T  Q  K  T  S  N  N  I  L  R  H  H  F  F  F  T  C  Q  H  L  I  T  S  R :   H  N  I  L  *  E  T  R  N  I  K  P  L  M  R  G  *  A  Q  K  V  *  M  H  P  Y  E  :  K  *  G  L  F  S  *  T  Q  Y  P  K  E  T  T  L  N  T  E  E  L  L  *  T  Q  C  I  I  I  L  A  F  F  A  G  G  L  L  K  W  P  L  K  S  I  M  C :   W  P  Q  *  H  L  L  I  G  I  L  I  G  N  T  I  I  W  *  M  K  N  I  P  C  Q  S  K  I  R  S  K  T  Q  L  I  I  I  M  N  R  L  I  F  I  Y  S  K  K  S  Y  Q  K  Y  L  I  V  R  Q  S  N  S  L  L  Y  H  V  K  D  F  P  Y  V  S  N  P  V  T  K  R  S  L  *  Q  N  *  *  K  F  L  L  *  H  *  I  I   </second_frame>
            <third_frame>   T  Y  I  F  F  N  K  :  D  D  D  G  Y  K  I  C  S  T  C  C  L  T  C  L  L  F  D  H  H  H  N  S  M  C  K  C  N  T  K  P  K  F  I  *  C  R  T  N  N  S  S  *  C  C  V  K  G  S  S :   V  L  G  W  I  T  S  S  I  L  F  *  T  R  I  W  R  W  S  *  K  L  D  F  S  S  I   : R  R  S  M  V  Y  K  C  H  R  L  P  K  T  C  R  R  L  K  W  F  I  K  T  N  G  S  T  T  I  S  R  N  S  Q  *  E  *  Y  P  K  S  R :   F  L  *  L  E  Q  S  S  C  C  I  L  R  W  W  I  V  H  W  R  F  *  I  H  *  S  K  *  *  *   : N  *  R  S  S  V  *  R  A  K  D  F  L  H  S  T  *  G  G  A  G  K  R  I  K  E  C  Q  K   : C  N  P  S  W  Q  F  C  R  R  I  S  S  N  I  I  L  *  L  F  P  *  F  I  A  N  *  F  *  S  E  V  F  S  *  F  W  L  L  C  S  F  :  Q  E  S  C  A  R  K  I  L  D  M  E  I  F  R  S  C  R  F  T   : R  S  C  Q  N  V  T  K  I  M  H  F  K  N  E  S  R  I   : V  P  L  L  R  K  H  P  T  I  Y  *  D  T  I  F  S  S  H  V  S  I  *  *  H  R   : D  T  I  Y  F  R  R  R  E  I  *  S  R  *  *  G  V  R  P  R  K  Y  E  C  I  P  T  R :   N  K  V  C  F  L  K  R  N  T  Q  K  R  Q  P  *  T  Q  R  S  F  Y  R  R  N  A  S  S  Y  *  P  F  S  P  V  V  S  *  S  G  P  *  N  R  *  C   : V  G  P  N  S  I  C  *  L  V  F  *  S  E  I  L  L  F  G  R  *  K  T  Y  H  A  N  Q  K  Y  D  Q  K  H  N  L  L  L  S  *  I  D  *  S  S  F  I  P  R  K  V  I  K  N  I  *  L  L  D  N  Q  I  L  Y  C  I  M  *  K  I  F  P  M  Y  P  I  R  *  Q  R  G  P  F  D  K  I  N  K  N  F  Y  C  D  T  E  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52164" stop="52142"/>
                    <exon start="52032" stop="51881"/>
                    <exon start="51791" stop="51709"/>
                    <exon start="51521" stop="51395"/>
                    <exon start="50776" stop="50685"/>
                    <exon start="50374" stop="50288"/>
                    <exon start="50194" stop="50070"/>
                    <exon start="49971" stop="49911"/>
                    <exon start="49807" stop="49754"/>
                    <exon start="49674" stop="49597"/>
                    <exon start="49507" stop="49426"/>
                    <exon start="49232" stop="49093"/>
                    <exon start="49005" stop="48883"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1224</number_coding_nucleotides>
                  <number_encoded_amino_acids>408</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHIYFLIKMMMVTKSVQLVVLLVCCLTIITIQCANATQNPNLFNVEPTIVHSAASKGAVCLDGSPPAYYFEPGFGDGAENWIFHLSGGAWCINVTDCQKRAEGSNGSSKRMGPLQFQGIHSKNNTQNPDFYNWNKVVVAYCDGGSFIGDSEYIDPSNNRTKDLQFRGQKIFYTVLEEVLEKGLKNAKNAILAGSSAGGYPAILYCDYFRDSLPINSRVKCLVDSGYFVHFKNPVLERFWTWRFSGVAALQGAAKTLPKSCTSKMKAELCLYSENIQQYTKTPFFLHMSAFDNIETQYTLGDEKYKAVDEGLGPESMNASLREIRSVFLNAIPKRDNPKHRGAFIDAMHHHTSLFRRWSLEVALEIDNVLAPIAFADWYFDRKYYYLVDEKHTMPIKNTIKNTTYYYHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51792" e_stop="51709"/>
            <exon e_start="51521" e_stop="51395"/>
            <exon e_start="50776" e_stop="50685"/>
            <exon e_start="50374" e_stop="50288"/>
            <exon e_start="50194" e_stop="50070"/>
            <exon e_start="49971" e_stop="49911"/>
            <exon e_start="49807" e_stop="49754"/>
            <exon e_start="49674" e_stop="49597"/>
            <exon e_start="49507" e_stop="49426"/>
            <exon e_start="49232" e_stop="49093"/>
            <exon e_start="49005" e_stop="48715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="0.988"/>
          <exon-intron don_prob="0.993" acc_prob="0.989" e_score="0.984"/>
          <exon-intron don_prob="0.987" acc_prob="0.901" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.976"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="51792" e_stop="51709" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51708" i_stop="51522" i_length="187"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="51521" e_stop="51395" e_length="127"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.989">
            <gDNA_intron_boundary i_start="51394" i_stop="50777" i_length="618"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="50776" e_stop="50685" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.901">
            <gDNA_intron_boundary i_start="50684" i_stop="50375" i_length="310"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50374" e_stop="50288" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50287" i_stop="50195" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50194" e_stop="50070" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="50069" i_stop="49972" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49971" e_stop="49911" e_length="61"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49910" i_stop="49808" i_length="103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="49807" e_stop="49754" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.874">
            <gDNA_intron_boundary i_start="49753" i_stop="49675" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49674" e_stop="49597" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49596" i_stop="49508" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="49507" e_stop="49426" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="49425" i_stop="49233" i_length="193"/>
          </intron>
          <exon e_serial="10" e_score="0.976">
            <gDNA_exon_boundary e_start="49232" e_stop="49093" e_length="140"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49092" i_stop="49006" i_length="87"/>
          </intron>
          <exon e_serial="11" e_score="0.924">
            <gDNA_exon_boundary e_start="49005" e_stop="48715" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51792" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51769" stop="51709"/>
              <exon start="51521" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51501" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51487" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51487" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51478" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51470" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51458" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51458" stop="51395"/>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50776" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50762" stop="50685"/>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50374" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50372" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50347" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49093"/>
              <exon start="49005" stop="48970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50346" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50302" stop="50288"/>
              <exon start="50194" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50184" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50181" stop="50070"/>
              <exon start="49971" stop="49911"/>
              <exon start="49807" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49796" stop="49754"/>
              <exon start="49674" stop="49597"/>
              <exon start="49507" stop="49426"/>
              <exon start="49232" stop="49093"/>
              <exon start="49005" stop="48886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49121" stop="49093"/>
              <exon start="49005" stop="48715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGTGCTTGGATGGATCACCTCCAGCATACTATTTTGAACCAGGATTTGGAGATGGAGCTGAAAATTGGATTTTTCATCTATCC : GGAGGAGCATGGTGTATAAATGTCACAGATTGCCAAAAACGTGCCGAAGGCTCAAATGGTTCATCAAAACGAATGGGTCCACTACAATTTCAAGGAATTCACAGTAAGAATAATACCCAAAATCCAG : ATTTTTATAATTGGAACAAAGTAGTTGTTGCATACTGCGATGGTGGATCGTTCATTGGAGATTCTGAATACATTGATCCAAGTAATAATAGA : ACTAAAGATCTTCAGTTTAGAGGGCAAAAGATTTTTTACACAGTACTTGAGGAGGTGCTGGAAAAAGGATTAAAGAATGCCAAAAAT : GCAATCCTAGCTGGCAGTTCTGCAGGAGGATATCCAGCAATATTATATTGTGATTATTTCCGTGATTCATTGCCAATTAATTCTAGAGTGAAGTGTTTAGTTGATTCTGGCTACTTTGTTCATTT : CAAGAATCCTGTGCTCGAAAGATTTTGGACATGGAGATTTTCAGGAGTTGCCGCTTTACAA : GGAGCTGCCAAAACGTTACCAAAATCATGCACTTCAAAAATGAAAGCAGAATTG : TGCCTCTACTCAGAAAACATCCAACAATATACTAAGACACCATTTTTTCTTCACATGTCAGCATTTGATAACATCGAG : ACACAATATACTTTAGGAGACGAGAAATATAAAGCCGTTGATGAGGGGTTAGGCCCAGAAAGTATGAATGCATCCCTACGAG : AAATAAGGTCTGTTTTCTTAAACGCAATACCCAAAAGAGACAACCCTAAACACAGAGGAGCTTTTATAGACGCAATGCATCATCATACTAGCCTTTTTCGCCGGTGGTCTCTTGAAGTGGCCCTTGAAATCGATAATGTG : TTGGCCCCAATAGCATTTGCTGATTGGTATTTTGATCGGAAATACTATTATTTGGTAGATGAAAAACATACCATGCCAATCAAAAATACGATCAAAAACACAACTTATTATTATCATGAATAGACTAATCTTCATTTATTCCAAGAAAAGTTATCAAAAATATTTGATTGTTAGACAATCAAATTCTCTATTGTATCATGTAAAAGATTTTCCCTATGTATCCAATCCGGTGACAAAGAGGTCCCTTTGACAAAATTAATAAAAATTTCTATTGTGACACTGAATTATTAC</gDNA_template>
            <first_frame> V  C  L  D  G  S  P  P  A  Y  Y  F  E  P  G  F  G  D  G  A  E  N  W  I  F  H  L  S  :  G  G  A  W  C  I  N  V  T  D  C  Q  K  R  A  E  G  S  N  G  S  S  K  R  M  G  P  L  Q  F  Q  G  I  H  S  K  N  N  T  Q  N  P   : D  F  Y  N  W  N  K  V  V  V  A  Y  C  D  G  G  S  F  I  G  D  S  E  Y  I  D  P  S  N  N  R  :  T  K  D  L  Q  F  R  G  Q  K  I  F  Y  T  V  L  E  E  V  L  E  K  G  L  K  N  A  K  N  :  A  I  L  A  G  S  S  A  G  G  Y  P  A  I  L  Y  C  D  Y  F  R  D  S  L  P  I  N  S  R  V  K  C  L  V  D  S  G  Y  F  V  H  F :   K  N  P  V  L  E  R  F  W  T  W  R  F  S  G  V  A  A  L  Q  :  G  A  A  K  T  L  P  K  S  C  T  S  K  M  K  A  E  L  :  C  L  Y  S  E  N  I  Q  Q  Y  T  K  T  P  F  F  L  H  M  S  A  F  D  N  I  E  :  T  Q  Y  T  L  G  D  E  K  Y  K  A  V  D  E  G  L  G  P  E  S  M  N  A  S  L  R   : E  I  R  S  V  F  L  N  A  I  P  K  R  D  N  P  K  H  R  G  A  F  I  D  A  M  H  H  H  T  S  L  F  R  R  W  S  L  E  V  A  L  E  I  D  N  V  :  L  A  P  I  A  F  A  D  W  Y  F  D  R  K  Y  Y  Y  L  V  D  E  K  H  T  M  P  I  K  N  T  I  K  N  T  T  Y  Y  Y  H  E  *  T  N  L  H  L  F  Q  E  K  L  S  K  I  F  D  C  *  T  I  K  F  S  I  V  S  C  K  R  F  S  L  C  I  Q  S  G  D  K  E  V  P  L  T  K  L  I  K  I  S  I  V  T  L  N  Y  Y </first_frame>
            <second_frame>  C  A  W  M  D  H  L  Q  H  T  I  L  N  Q  D  L  E  M  E  L  K  I  G  F  F  I  Y  P :   E  E  H  G  V  *  M  S  Q  I  A  K  N  V  P  K  A  Q  M  V  H  Q  N  E  W  V  H  Y  N  F  K  E  F  T  V  R  I  I  P  K  I  Q  :  I  F  I  I  G  T  K  *  L  L  H  T  A  M  V  D  R  S  L  E  I  L  N  T  L  I  Q  V  I  I  E :   L  K  I  F  S  L  E  G  K  R  F  F  T  Q  Y  L  R  R  C  W  K  K  D  *  R  M  P  K  M :   Q  S  *  L  A  V  L  Q  E  D  I  Q  Q  Y  Y  I  V  I  I  S  V  I  H  C  Q  L  I  L  E  *  S  V  *  L  I  L  A  T  L  F  I   : S  R  I  L  C  S  K  D  F  G  H  G  D  F  Q  E  L  P  L  Y  K :   E  L  P  K  R  Y  Q  N  H  A  L  Q  K  *  K  Q  N  C :   A  S  T  Q  K  T  S  N  N  I  L  R  H  H  F  F  F  T  C  Q  H  L  I  T  S  R :   H  N  I  L  *  E  T  R  N  I  K  P  L  M  R  G  *  A  Q  K  V  *  M  H  P  Y  E  :  K  *  G  L  F  S  *  T  Q  Y  P  K  E  T  T  L  N  T  E  E  L  L  *  T  Q  C  I  I  I  L  A  F  F  A  G  G  L  L  K  W  P  L  K  S  I  M  C :   W  P  Q  *  H  L  L  I  G  I  L  I  G  N  T  I  I  W  *  M  K  N  I  P  C  Q  S  K  I  R  S  K  T  Q  L  I  I  I  M  N  R  L  I  F  I  Y  S  K  K  S  Y  Q  K  Y  L  I  V  R  Q  S  N  S  L  L  Y  H  V  K  D  F  P  Y  V  S  N  P  V  T  K  R  S  L  *  Q  N  *  *  K  F  L  L  *  H  *  I  I   </second_frame>
            <third_frame>   V  L  G  W  I  T  S  S  I  L  F  *  T  R  I  W  R  W  S  *  K  L  D  F  S  S  I   : R  R  S  M  V  Y  K  C  H  R  L  P  K  T  C  R  R  L  K  W  F  I  K  T  N  G  S  T  T  I  S  R  N  S  Q  *  E  *  Y  P  K  S  R :   F  L  *  L  E  Q  S  S  C  C  I  L  R  W  W  I  V  H  W  R  F  *  I  H  *  S  K  *  *  *   : N  *  R  S  S  V  *  R  A  K  D  F  L  H  S  T  *  G  G  A  G  K  R  I  K  E  C  Q  K   : C  N  P  S  W  Q  F  C  R  R  I  S  S  N  I  I  L  *  L  F  P  *  F  I  A  N  *  F  *  S  E  V  F  S  *  F  W  L  L  C  S  F  :  Q  E  S  C  A  R  K  I  L  D  M  E  I  F  R  S  C  R  F  T   : R  S  C  Q  N  V  T  K  I  M  H  F  K  N  E  S  R  I   : V  P  L  L  R  K  H  P  T  I  Y  *  D  T  I  F  S  S  H  V  S  I  *  *  H  R   : D  T  I  Y  F  R  R  R  E  I  *  S  R  *  *  G  V  R  P  R  K  Y  E  C  I  P  T  R :   N  K  V  C  F  L  K  R  N  T  Q  K  R  Q  P  *  T  Q  R  S  F  Y  R  R  N  A  S  S  Y  *  P  F  S  P  V  V  S  *  S  G  P  *  N  R  *  C   : V  G  P  N  S  I  C  *  L  V  F  *  S  E  I  L  L  F  G  R  *  K  T  Y  H  A  N  Q  K  Y  D  Q  K  H  N  L  L  L  S  *  I  D  *  S  S  F  I  P  R  K  V  I  K  N  I  *  L  L  D  N  Q  I  L  Y  C  I  M  *  K  I  F  P  M  Y  P  I  R  *  Q  R  G  P  F  D  K  I  N  K  N  F  Y  C  D  T  E  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51792" stop="51709"/>
                    <exon start="51521" stop="51395"/>
                    <exon start="50776" stop="50685"/>
                    <exon start="50374" stop="50288"/>
                    <exon start="50194" stop="50070"/>
                    <exon start="49971" stop="49911"/>
                    <exon start="49807" stop="49754"/>
                    <exon start="49674" stop="49597"/>
                    <exon start="49507" stop="49426"/>
                    <exon start="49232" stop="49093"/>
                    <exon start="49005" stop="48883"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLDGSPPAYYFEPGFGDGAENWIFHLSGGAWCINVTDCQKRAEGSNGSSKRMGPLQFQGIHSKNNTQNPDFYNWNKVVVAYCDGGSFIGDSEYIDPSNNRTKDLQFRGQKIFYTVLEEVLEKGLKNAKNAILAGSSAGGYPAILYCDYFRDSLPINSRVKCLVDSGYFVHFKNPVLERFWTWRFSGVAALQGAAKTLPKSCTSKMKAELCLYSENIQQYTKTPFFLHMSAFDNIETQYTLGDEKYKAVDEGLGPESMNASLREIRSVFLNAIPKRDNPKHRGAFIDAMHHHTSLFRRWSLEVALEIDNVLAPIAFADWYFDRKYYYLVDEKHTMPIKNTIKNTTYYYHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="64525" PGL_stop="65471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64525" e_stop="64906"/>
            <exon e_start="65000" e_stop="65471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64525" e_stop="64906" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64907" i_stop="64999" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="65000" e_stop="65471" e_length="472"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64525" stop="64906"/>
              <exon start="65000" stop="65188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64537" stop="64906"/>
              <exon start="65000" stop="65322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64541" stop="64906"/>
              <exon start="65000" stop="65329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64541" stop="64893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64697" stop="64906"/>
              <exon start="65000" stop="65471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCTCTGATAACAACTCTTGGCTAAAGCCATCCTATACTCTTTTTCTCTTTAGTCATTACATTATTAACAATGCCTGAGGCACCAAAGAATTCCCCTATTGTTGCTGAAGAAAACAAGAAAACTCTTCATTTCATTGAAGATGTTACCACCAAAGCTGATGAGATCCAAAAGAGAGTCCTTGCTGAAATACTTTGTCGAAATGCCAACGTTGAGTACTTGAAGCGCTATGCTGATCTTAATGGCAATACTGATAGAGAGACTTTCAAAAAAGTTATGCCTGTTATCAGTTATGAAGATATTCAGCATGATATCAACCGCATTGCGAGTGGTGATACATCTCCTATCTTGTGCTCCCAACCTGTCTCTGAATTCTTGACAAG : TTCTGGTACGTCAGGAGGGGAGAGGAAATTGATGCCAACAACAGAGGAAGAGCTTGGAAGACGATCGTTGCTTTATAGTCTTCTGATGCCTGTGATGAGTCATTTTGTCCCAGATTTGGAGACGGGCAAAGGAATGTACTTTCTGTTTGTAAAATCTGAATCTAAGACCCCGGGAGGCCTATTAGCTCGTCCTGTTTTAACAAGTTATTACAATAGCCCTCATTTTAAAAACAGACGTCCTGACCCTTACACAAACTACACTAGCCCAAATGAAACTATTCTCTGCCCTGATTCATACCAGAGCATGTATTCCCAAATGCTCTGTGGACTCAGCCAAAATGCACAAGTCCTTCGTGTTGGCGCGGTTTTTGCCTCTGGCTTCATCCGCGCCATCCGCTTCTTAGAGAAGCACTGGTCCCTTCTTTGTACTGATATTCGATCCGGTATCATGAATACTGAATTGATTACTGAT</gDNA_template>
            <first_frame> S  L  *  *  Q  L  L  A  K  A  I  L  Y  S  F  S  L  *  S  L  H  Y  *  Q  C  L  R  H  Q  R  I  P  L  L  L  L  K  K  T  R  K  L  F  I  S  L  K  M  L  P  P  K  L  M  R  S  K  R  E  S  L  L  K  Y  F  V  E  M  P  T  L  S  T  *  S  A  M  L  I  L  M  A  I  L  I  E  R  L  S  K  K  L  C  L  L  S  V  M  K  I  F  S  M  I  S  T  A  L  R  V  V  I  H  L  L  S  C  A  P  N  L  S  L  N  S  *  Q   : V  L  V  R  Q  E  G  R  G  N  *  C  Q  Q  Q  R  K  S  L  E  D  D  R  C  F  I  V  F  *  C  L  *  *  V  I  L  S  Q  I  W  R  R  A  K  E  C  T  F  C  L  *  N  L  N  L  R  P  R  E  A  Y  *  L  V  L  F  *  Q  V  I  T  I  A  L  I  L  K  T  D  V  L  T  L  T  Q  T  T  L  A  Q  M  K  L  F  S  A  L  I  H  T  R  A  C  I  P  K  C  S  V  D  S  A  K  M  H  K  S  F  V  L  A  R  F  L  P  L  A  S  S  A  P  S  A  S  *  R  S  T  G  P  F  F  V  L  I  F  D  P  V  S  *  I  L  N  *  L  L   </first_frame>
            <second_frame>  P  S  D  N  N  S  W  L  K  P  S  Y  T  L  F  L  F  S  H  Y  I  I  N  N  A  *  G  T  K  E  F  P  Y  C  C  *  R  K  Q  E  N  S  S  F  H  *  R  C  Y  H  Q  S  *  *  D  P  K  E  S  P  C  *  N  T  L  S  K  C  Q  R  *  V  L  E  A  L  C  *  S  *  W  Q  Y  *  *  R  D  F  Q  K  S  Y  A  C  Y  Q  L  *  R  Y  S  A  *  Y  Q  P  H  C  E  W  *  Y  I  S  Y  L  V  L  P  T  C  L  *  I  L  D  K  :  F  W  Y  V  R  R  G  E  E  I  D  A  N  N  R  G  R  A  W  K  T  I  V  A  L  *  S  S  D  A  C  D  E  S  F  C  P  R  F  G  D  G  Q  R  N  V  L  S  V  C  K  I  *  I  *  D  P  G  R  P  I  S  S  S  C  F  N  K  L  L  Q  *  P  S  F  *  K  Q  T  S  *  P  L  H  K  L  H  *  P  K  *  N  Y  S  L  P  *  F  I  P  E  H  V  F  P  N  A  L  W  T  Q  P  K  C  T  S  P  S  C  W  R  G  F  C  L  W  L  H  P  R  H  P  L  L  R  E  A  L  V  P  S  L  Y  *  Y  S  I  R  Y  H  E  Y  *  I  D  Y  *  </second_frame>
            <third_frame>   P  L  I  T  T  L  G  *  S  H  P  I  L  F  F  S  L  V  I  T  L  L  T  M  P  E  A  P  K  N  S  P  I  V  A  E  E  N  K  K  T  L  H  F  I  E  D  V  T  T  K  A  D  E  I  Q  K  R  V  L  A  E  I  L  C  R  N  A  N  V  E  Y  L  K  R  Y  A  D  L  N  G  N  T  D  R  E  T  F  K  K  V  M  P  V  I  S  Y  E  D  I  Q  H  D  I  N  R  I  A  S  G  D  T  S  P  I  L  C  S  Q  P  V  S  E  F  L  T  S :   S  G  T  S  G  G  E  R  K  L  M  P  T  T  E  E  E  L  G  R  R  S  L  L  Y  S  L  L  M  P  V  M  S  H  F  V  P  D  L  E  T  G  K  G  M  Y  F  L  F  V  K  S  E  S  K  T  P  G  G  L  L  A  R  P  V  L  T  S  Y  Y  N  S  P  H  F  K  N  R  R  P  D  P  Y  T  N  Y  T  S  P  N  E  T  I  L  C  P  D  S  Y  Q  S  M  Y  S  Q  M  L  C  G  L  S  Q  N  A  Q  V  L  R  V  G  A  V  F  A  S  G  F  I  R  A  I  R  F  L  E  K  H  W  S  L  L  C  T  D  I  R  S  G  I  M  N  T  E  L  I  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64551" stop="64906"/>
                    <exon start="65000" stop="65471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHPILFFSLVITLLTMPEAPKNSPIVAEENKKTLHFIEDVTTKADEIQKRVLAEILCRNANVEYLKRYADLNGNTDRETFKKVMPVISYEDIQHDINRIASGDTSPILCSQPVSEFLTSSGTSGGERKLMPTTEEELGRRSLLYSLLMPVMSHFVPDLETGKGMYFLFVKSESKTPGGLLARPVLTSYYNSPHFKNRRPDPYTNYTSPNETILCPDSYQSMYSQMLCGLSQNAQVLRVGAVFASGFIRAIRFLEKHWSLLCTDIRSGIMNTELITD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71487" PGL_stop="68855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71481" e_stop="71249"/>
            <exon e_start="71169" e_stop="70953"/>
            <exon e_start="68967" e_stop="68855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71481" e_stop="71249" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71169" e_stop="70953" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70952" i_stop="68968" i_length="1985"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68967" e_stop="68855" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71481" stop="71249"/>
              <exon start="71169" stop="70953"/>
              <exon start="68967" stop="68855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71480" stop="71249"/>
              <exon start="71169" stop="70953"/>
              <exon start="68967" stop="68861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71480" stop="71249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG : TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAG : GTAATAACAATAACAATGATGATAATAGCAATAATGGCGATGGTGATAAGTGAGTATCGTCAATCCCGAGACTCTGATTTCTCAAGACGATTCTGTTACTAGTGCTGCAAAAT</gDNA_template>
            <first_frame> R  R  *  G  M  M  V  *  P  *  I  S  K  *  E  M  K  L  L  R  S  S  T  L  R  A  L  P  C  H  V  H  Y  *  Y  F  H  L  L  L  K  V  P  I  P  F  Y  Y  F  S  M  D  S  A  S  N  P  T  L  T  S  P  S  S  Y  I  F  L  P  I  N  I  S  P  L  L  L  S :   S  L  *  *  H  L  D  A  K  *  K  Q  Q  K  K  *  Q  S  G  Y  Q  L  R  S  S  T  L  C  C  Q  R  K  F  F  Q  T  S  R  K  S  R  C  Q  A  T  A  E  E  V  K  Q  H  S  P  *  L  *  P  M  D  Q  E  I  A  R  A  N  P  S  S  L  Q  :  V  I  T  I  T  M  M  I  I  A  I  M  A  M  V  I  S  E  Y  R  Q  S  R  D  S  D  F  S  R  R  F  C  Y  *  C  C  K   </first_frame>
            <second_frame>  E  G  K  G  *  W  Y  S  L  R  F  R  S  R  R  *  S  C  *  D  H  Q  R  *  E  L  F  L  A  M  S  I  I  S  I  F  T  Y  Y  *  R  F  L  S  H  S  T  I  F  P  W  I  P  P  P  T  R  L  L  Q  V  P  P  P  T  Y  F  F  P  S  I  Y  R  R  C  S  *   : V  L  S  N  D  I  S  M  R  S  K  N  S  K  K  S  S  R  V  V  I  S  *  E  A  Q  L  C  A  A  R  E  S  F  S  R  H  P  E  S  R  G  V  R  P  Q  Q  R  R  *  N  S  I  R  L  S  F  S  L  W  I  R  R  *  Q  G  R  I  H  R  H  F  R :   *  *  Q  *  Q  *  *  *  *  Q  *  W  R  W  *  *  V  S  I  V  N  P  E  T  L  I  S  Q  D  D  S  V  T  S  A  A  K  </second_frame>
            <third_frame>   K  V  R  D  D  G  I  A  L  D  F  E  V  G  D  E  V  V  K  I  I  N  V  K  S  S  S  L  P  C  P  L  L  V  F  S  P  T  T  E  G  S  Y  P  I  L  L  F  F  H  G  F  R  L  Q  P  D  S  Y  K  S  L  L  L  H  I  S  S  H  Q  Y  I  A  V  A  P  K  :  F  S  L  M  T  S  R  C  E  V  K  T  A  K  K  V  A  E  W  L  S  A  K  K  L  N  S  V  L  P  E  K  V  F  P  D  I  Q  K  V  A  V  S  G  H  S  R  G  G  K  T  A  F  A  L  A  L  A  Y  G  S  G  D  S  K  G  E  S  I  V  T  S   : G  N  N  N  N  N  D  D  N  S  N  N  G  D  G  D  K  *  V  S  S  I  P  R  L  *  F  L  K  T  I  L  L  L  V  L  Q  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71479" stop="71249"/>
                    <exon start="71169" stop="70953"/>
                    <exon start="68967" stop="68915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVRDDGIALDFEVGDEVVKIINVKSSSLPCPLLVFSPTTEGSYPILLFFHGFRLQPDSYKSLLLHISSHQYIAVAPKFSLMTSRCEVKTAKKVAEWLSAKKLNSVLPEKVFPDIQKVAVSGHSRGGKTAFALALAYGSGDSKGESIVTSGNNNNNDDNSNNGDGDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71487" e_stop="71249"/>
            <exon e_start="71169" e_stop="71025"/>
            <exon e_start="70887" e_stop="70375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71487" e_stop="71249" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71169" e_stop="71025" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="71024" i_stop="70888" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70887" e_stop="70375" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71487" stop="71249"/>
              <exon start="71169" stop="71025"/>
              <exon start="70887" stop="70541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71480" stop="71249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70875" stop="70375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG : TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAG : GAAGGGCAACCCGAAAACAAAAACAACCCCCTCTCAAAATCTCCGCGCTCCTCGGAATCGATCCAGTTGCTAAAGGCTCCTCTTGTTTCTGCTCTTCCAACATTCTCCAATATATTCCTTACAGTTTCAATCATTCAGTCCCTGTAGCTGTAATTGGTACCGGCTTGTCTAATAGACGAGCCTATGGTGTGTGTCCACCCGATGCACCAAACGGGGTGAATCATGCTGAGTTTTTCAACGAGAGTAAACCCCCTTGTTACTATTTTTTGGCCAAGAATTATGGGCATACTGATATGCTGGATGAAGGGGAAAAAATAATGGGAATTATGAAGAAAAAAGGGAAAAAGGAAACAAAGCACGATCTAAGAAGGACTATAGGAGGACTTTTTGTGGCTTTTTTCAAGGCTTATTTGGAAGGTCAAGCGGATGATTTAATTAATATTATTGAATCGCCTGGGATTCGTTGTCCTATTAAACTTGATCCTGTTATATCTATCGAAGAGTAAGATCATC</gDNA_template>
            <first_frame> *  W  R  R  *  G  M  M  V  *  P  *  I  S  K  *  E  M  K  L  L  R  S  S  T  L  R  A  L  P  C  H  V  H  Y  *  Y  F  H  L  L  L  K  V  P  I  P  F  Y  Y  F  S  M  D  S  A  S  N  P  T  L  T  S  P  S  S  Y  I  F  L  P  I  N  I  S  P  L  L  L  S :   S  L  *  *  H  L  D  A  K  *  K  Q  Q  K  K  *  Q  S  G  Y  Q  L  R  S  S  T  L  C  C  Q  R  K  F  F  Q  T  S  R  K  S  R  C  Q  A  T  A  E  E  :  E  G  Q  P  E  N  K  N  N  P  L  S  K  S  P  R  S  S  E  S  I  Q  L  L  K  A  P  L  V  S  A  L  P  T  F  S  N  I  F  L  T  V  S  I  I  Q  S  L  *  L  *  L  V  P  A  C  L  I  D  E  P  M  V  C  V  H  P  M  H  Q  T  G  *  I  M  L  S  F  S  T  R  V  N  P  L  V  T  I  F  W  P  R  I  M  G  I  L  I  C  W  M  K  G  K  K  *  W  E  L  *  R  K  K  G  K  R  K  Q  S  T  I  *  E  G  L  *  E  D  F  L  W  L  F  S  R  L  I  W  K  V  K  R  M  I  *  L  I  L  L  N  R  L  G  F  V  V  L  L  N  L  I  L  L  Y  L  S  K  S  K  I  I </first_frame>
            <second_frame>  D  G  E  G  K  G  *  W  Y  S  L  R  F  R  S  R  R  *  S  C  *  D  H  Q  R  *  E  L  F  L  A  M  S  I  I  S  I  F  T  Y  Y  *  R  F  L  S  H  S  T  I  F  P  W  I  P  P  P  T  R  L  L  Q  V  P  P  P  T  Y  F  F  P  S  I  Y  R  R  C  S  *   : V  L  S  N  D  I  S  M  R  S  K  N  S  K  K  S  S  R  V  V  I  S  *  E  A  Q  L  C  A  A  R  E  S  F  S  R  H  P  E  S  R  G  V  R  P  Q  Q  R  R :   K  G  N  P  K  T  K  T  T  P  S  Q  N  L  R  A  P  R  N  R  S  S  C  *  R  L  L  L  F  L  L  F  Q  H  S  P  I  Y  S  L  Q  F  Q  S  F  S  P  C  S  C  N  W  Y  R  L  V  *  *  T  S  L  W  C  V  S  T  R  C  T  K  R  G  E  S  C  *  V  F  Q  R  E  *  T  P  L  L  L  F  F  G  Q  E  L  W  A  Y  *  Y  A  G  *  R  G  K  N  N  G  N  Y  E  E  K  R  E  K  G  N  K  A  R  S  K  K  D  Y  R  R  T  F  C  G  F  F  Q  G  L  F  G  R  S  S  G  *  F  N  *  Y  Y  *  I  A  W  D  S  L  S  Y  *  T  *  S  C  Y  I  Y  R  R  V  R  S   </second_frame>
            <third_frame>   M  E  K  V  R  D  D  G  I  A  L  D  F  E  V  G  D  E  V  V  K  I  I  N  V  K  S  S  S  L  P  C  P  L  L  V  F  S  P  T  T  E  G  S  Y  P  I  L  L  F  F  H  G  F  R  L  Q  P  D  S  Y  K  S  L  L  L  H  I  S  S  H  Q  Y  I  A  V  A  P  K  :  F  S  L  M  T  S  R  C  E  V  K  T  A  K  K  V  A  E  W  L  S  A  K  K  L  N  S  V  L  P  E  K  V  F  P  D  I  Q  K  V  A  V  S  G  H  S  R  G   : G  R  A  T  R  K  Q  K  Q  P  P  L  K  I  S  A  L  L  G  I  D  P  V  A  K  G  S  S  C  F  C  S  S  N  I  L  Q  Y  I  P  Y  S  F  N  H  S  V  P  V  A  V  I  G  T  G  L  S  N  R  R  A  Y  G  V  C  P  P  D  A  P  N  G  V  N  H  A  E  F  F  N  E  S  K  P  P  C  Y  Y  F  L  A  K  N  Y  G  H  T  D  M  L  D  E  G  E  K  I  M  G  I  M  K  K  K  G  K  K  E  T  K  H  D  L  R  R  T  I  G  G  L  F  V  A  F  F  K  A  Y  L  E  G  Q  A  D  D  L  I  N  I  I  E  S  P  G  I  R  C  P  I  K  L  D  P  V  I  S  I  E  E  *  D  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71485" stop="71249"/>
                    <exon start="71169" stop="71025"/>
                    <exon start="70887" stop="70382"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEKVRDDGIALDFEVGDEVVKIINVKSSSLPCPLLVFSPTTEGSYPILLFFHGFRLQPDSYKSLLLHISSHQYIAVAPKFSLMTSRCEVKTAKKVAEWLSAKKLNSVLPEKVFPDIQKVAVSGHSRGGRATRKQKQPPLKISALLGIDPVAKGSSCFCSSNILQYIPYSFNHSVPVAVIGTGLSNRRAYGVCPPDAPNGVNHAEFFNESKPPCYYFLAKNYGHTDMLDEGEKIMGIMKKKGKKETKHDLRRTIGGLFVAFFKAYLEGQADDLINIIESPGIRCPIKLDPVISIEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71486" e_stop="71249"/>
            <exon e_start="71169" e_stop="70953"/>
            <exon e_start="69180" e_stop="68988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71486" e_stop="71249" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="71248" i_stop="71170" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71169" e_stop="70953" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="70952" i_stop="69181" i_length="1772"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="69180" e_stop="68988" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71486" stop="71249"/>
              <exon start="71169" stop="70953"/>
              <exon start="69180" stop="68988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71480" stop="71249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGGAGAAGGTAAGGGATGATGGTATAGCCTTAGATTTCGAAGTAGGAGATGAAGTTGTTAAGATCATCAACGTTAAGAGCTCTTCCTTGCCATGTCCATTATTAGTATTTTCACCTACTACTGAAGGTTCCTATCCCATTCTACTATTTTTCCATGGATTCCGCCTCCAACCCGACTCTTACAAGTCCCTCCTCCTACATATTTCTTCCCATCAATATATCGCCGTTGCTCCTAAG : TTCTCTCTAATGACATCTCGATGCGAAGTAAAAACAGCAAAAAAAGTAGCAGAGTGGTTATCAGCTAAGAAGCTCAACTCTGTGCTGCCAGAGAAAGTTTTTCCAGACATCCAGAAAGTCGCGGTGTCAGGCCACAGCAGAGGAGGTAAAACAGCATTCGCCTTAGCTTTAGCCTATGGATCAGGAGATAGCAAGGGCGAATCCATCGTCACTTCAG : GTACACTATTTCACATTCGAGTAGCCAAAGATGCATCTGTGGCGGATTTGAAAAAAGAAATAAGTAATCAAGAAAATCTTCCAGAGAATCATTTGATTCTCATGTTGGATACGGGACATGGAGATTCTATCATGTTGAATGACGACGAAATTTCCCTTGTGGATTATGGGGTAACAGATGGATCACATTTTTA</gDNA_template>
            <first_frame> D  G  E  G  K  G  *  W  Y  S  L  R  F  R  S  R  R  *  S  C  *  D  H  Q  R  *  E  L  F  L  A  M  S  I  I  S  I  F  T  Y  Y  *  R  F  L  S  H  S  T  I  F  P  W  I  P  P  P  T  R  L  L  Q  V  P  P  P  T  Y  F  F  P  S  I  Y  R  R  C  S  *   : V  L  S  N  D  I  S  M  R  S  K  N  S  K  K  S  S  R  V  V  I  S  *  E  A  Q  L  C  A  A  R  E  S  F  S  R  H  P  E  S  R  G  V  R  P  Q  Q  R  R  *  N  S  I  R  L  S  F  S  L  W  I  R  R  *  Q  G  R  I  H  R  H  F  R :   Y  T  I  S  H  S  S  S  Q  R  C  I  C  G  G  F  E  K  R  N  K  *  S  R  K  S  S  R  E  S  F  D  S  H  V  G  Y  G  T  W  R  F  Y  H  V  E  *  R  R  N  F  P  C  G  L  W  G  N  R  W  I  T  F  L </first_frame>
            <second_frame>  M  E  K  V  R  D  D  G  I  A  L  D  F  E  V  G  D  E  V  V  K  I  I  N  V  K  S  S  S  L  P  C  P  L  L  V  F  S  P  T  T  E  G  S  Y  P  I  L  L  F  F  H  G  F  R  L  Q  P  D  S  Y  K  S  L  L  L  H  I  S  S  H  Q  Y  I  A  V  A  P  K  :  F  S  L  M  T  S  R  C  E  V  K  T  A  K  K  V  A  E  W  L  S  A  K  K  L  N  S  V  L  P  E  K  V  F  P  D  I  Q  K  V  A  V  S  G  H  S  R  G  G  K  T  A  F  A  L  A  L  A  Y  G  S  G  D  S  K  G  E  S  I  V  T  S   : G  T  L  F  H  I  R  V  A  K  D  A  S  V  A  D  L  K  K  E  I  S  N  Q  E  N  L  P  E  N  H  L  I  L  M  L  D  T  G  H  G  D  S  I  M  L  N  D  D  E  I  S  L  V  D  Y  G  V  T  D  G  S  H  F   </second_frame>
            <third_frame>   W  R  R  *  G  M  M  V  *  P  *  I  S  K  *  E  M  K  L  L  R  S  S  T  L  R  A  L  P  C  H  V  H  Y  *  Y  F  H  L  L  L  K  V  P  I  P  F  Y  Y  F  S  M  D  S  A  S  N  P  T  L  T  S  P  S  S  Y  I  F  L  P  I  N  I  S  P  L  L  L  S :   S  L  *  *  H  L  D  A  K  *  K  Q  Q  K  K  *  Q  S  G  Y  Q  L  R  S  S  T  L  C  C  Q  R  K  F  F  Q  T  S  R  K  S  R  C  Q  A  T  A  E  E  V  K  Q  H  S  P  *  L  *  P  M  D  Q  E  I  A  R  A  N  P  S  S  L  Q  :  V  H  Y  F  T  F  E  *  P  K  M  H  L  W  R  I  *  K  K  K  *  V  I  K  K  I  F  Q  R  I  I  *  F  S  C  W  I  R  D  M  E  I  L  S  C  *  M  T  T  K  F  P  L  W  I  M  G  *  Q  M  D  H  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71485" stop="71249"/>
                    <exon start="71169" stop="70953"/>
                    <exon start="69180" stop="68990"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEKVRDDGIALDFEVGDEVVKIINVKSSSLPCPLLVFSPTTEGSYPILLFFHGFRLQPDSYKSLLLHISSHQYIAVAPKFSLMTSRCEVKTAKKVAEWLSAKKLNSVLPEKVFPDIQKVAVSGHSRGGKTAFALALAYGSGDSKGESIVTSGTLFHIRVAKDASVADLKKEISNQENLPENHLILMLDTGHGDSIMLNDDEISLVDYGVTDGSHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="77310" PGL_stop="78827"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77310" e_stop="77480"/>
            <exon e_start="77707" e_stop="77944"/>
            <exon e_start="78019" e_stop="78169"/>
            <exon e_start="78250" e_stop="78827"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.779" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77310" e_stop="77480" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.971">
            <gDNA_intron_boundary i_start="77481" i_stop="77706" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77707" e_stop="77944" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.821" acc_prob="0.987">
            <gDNA_intron_boundary i_start="77945" i_stop="78018" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78019" e_stop="78169" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.779">
            <gDNA_intron_boundary i_start="78170" i_stop="78249" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="78250" e_stop="78827" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77310" stop="77480"/>
              <exon start="77707" stop="77944"/>
              <exon start="78019" stop="78169"/>
              <exon start="78250" stop="78389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77310" stop="77480"/>
              <exon start="77707" stop="77944"/>
              <exon start="78019" stop="78115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78127" stop="78169"/>
              <exon start="78250" stop="78731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78443" stop="78827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTCCAGGACTTCCACACAAGGACAAGATGAGTTCATGAATGAAGTGATGTATATTGTGAAACTTCAGCATAGAAATCTTGTGAAGATTCTCGGATGTTGCATCGAAGGAGAAGAAAGAATGTTGATCTATGAGTACATGCCAAGTGGAAGTCTTGATTCATTTATATTTG : ATGACACACGAAGCACGGTATTAGACTGGTCTAAGCGCTTTCACATAATCAACGGGATAGCTCGGGGACTTGTGTATCTGCATCAAGATTCTCAGTTGAGGATCATTCACAGGGACCTGAAAGCTAACAACATTTTACTAGACAATGACATGAATCCAAAGATATCAGACTTCGGTATAGCAAGAAGTTGTGAAGATGACAAGTTTGGAGCCAAGACACACCGAGTAGTTGGAACATA : TGGCTACCTCTCACCGGAATATGCTGTACATGGTGTCTACTCGGTGAAGTCAGATGTATTTAGCTTTGGTGTCTTAGTTCTTGAAATTGTAAGTGGGAAAGGGAACAGAAAATTCTCTCATCCGGATCATAACCTTAACCTCCTTGGACAT : GCATGGACACTCTATAAAGAAGGTAGATCAATGGAATTACTCGGGGATTTCCCCATTGGTGTTTGTTCTACACCTGAAGTTATACGATCAATCCATGTTGGTCTATTGTGTGTGCAACATCGTCCAGAAGATCGTCCAAGTATGTCTTCAGTGGTTATGATGTTAAACAATGAAGGTGTACTGCCACCTGCTAAACAACCAGCTTTCTTCGTAGAAACAAACACACCAGATAGTGAATTCTCTTCTAGTCAACATGCACATAGTACAGTGAATGAGATCACCATCACAACATTAGATCCCAGATAGTAAATTCTTCATTGCAAATAGAAATCCTTCATTCTTTTCTTCTTTGTAGCAATGTAGGGCGAAAGTTCCCACTCCAGCTACTCAAGAAGAGTGCAGTCATCTTCTTGTAACATGGTGCAACACTGCTAACATGTGTTAAAACATTTTCTTTCAACTATTTCACTACAACTTGTTACTTTGTACAAAGGTGAATAGGAAATATTATGTCCTATCCCAAATAGTTTGAGTTTAACGCAGAATTGCCCGATTGATGGACCAATTTTGCTTTCACT</gDNA_template>
            <first_frame> C  P  G  L  P  H  K  D  K  M  S  S  *  M  K  *  C  I  L  *  N  F  S  I  E  I  L  *  R  F  S  D  V  A  S  K  E  K  K  E  C  *  S  M  S  T  C  Q  V  E  V  L  I  H  L  Y  L  :  M  T  H  E  A  R  Y  *  T  G  L  S  A  F  T  *  S  T  G  *  L  G  D  L  C  I  C  I  K  I  L  S  *  G  S  F  T  G  T  *  K  L  T  T  F  Y  *  T  M  T  *  I  Q  R  Y  Q  T  S  V  *  Q  E  V  V  K  M  T  S  L  E  P  R  H  T  E  *  L  E  H   : M  A  T  S  H  R  N  M  L  Y  M  V  S  T  R  *  S  Q  M  Y  L  A  L  V  S  *  F  L  K  L  *  V  G  K  G  T  E  N  S  L  I  R  I  I  T  L  T  S  L  D  M :   H  G  H  S  I  K  K  V  D  Q  W  N  Y  S  G  I  S  P  L  V  F  V  L  H  L  K  L  Y  D  Q  S  M  L  V  Y  C  V  C  N  I  V  Q  K  I  V  Q  V  C  L  Q  W  L  *  C  *  T  M  K  V  Y  C  H  L  L  N  N  Q  L  S  S  *  K  Q  T  H  Q  I  V  N  S  L  L  V  N  M  H  I  V  Q  *  M  R  S  P  S  Q  H  *  I  P  D  S  K  F  F  I  A  N  R  N  P  S  F  F  S  S  L  *  Q  C  R  A  K  V  P  T  P  A  T  Q  E  E  C  S  H  L  L  V  T  W  C  N  T  A  N  M  C  *  N  I  F  F  Q  L  F  H  Y  N  L  L  L  C  T  K  V  N  R  K  Y  Y  V  L  S  Q  I  V  *  V  *  R  R  I  A  R  L  M  D  Q  F  C  F  H  </first_frame>
            <second_frame>  V  Q  D  F  H  T  R  T  R  *  V  H  E  *  S  D  V  Y  C  E  T  S  A  *  K  S  C  E  D  S  R  M  L  H  R  R  R  R  K  N  V  D  L  *  V  H  A  K  W  K  S  *  F  I  Y  I  * :   *  H  T  K  H  G  I  R  L  V  *  A  L  S  H  N  Q  R  D  S  S  G  T  C  V  S  A  S  R  F  S  V  E  D  H  S  Q  G  P  E  S  *  Q  H  F  T  R  Q  *  H  E  S  K  D  I  R  L  R  Y  S  K  K  L  *  R  *  Q  V  W  S  Q  D  T  P  S  S  W  N  I  :  W  L  P  L  T  G  I  C  C  T  W  C  L  L  G  E  V  R  C  I  *  L  W  C  L  S  S  *  N  C  K  W  E  R  E  Q  K  I  L  S  S  G  S  *  P  *  P  P  W  T   : C  M  D  T  L  *  R  R  *  I  N  G  I  T  R  G  F  P  H  W  C  L  F  Y  T  *  S  Y  T  I  N  P  C  W  S  I  V  C  A  T  S  S  R  R  S  S  K  Y  V  F  S  G  Y  D  V  K  Q  *  R  C  T  A  T  C  *  T  T  S  F  L  R  R  N  K  H  T  R  *  *  I  L  F  *  S  T  C  T  *  Y  S  E  *  D  H  H  H  N  I  R  S  Q  I  V  N  S  S  L  Q  I  E  I  L  H  S  F  L  L  C  S  N  V  G  R  K  F  P  L  Q  L  L  K  K  S  A  V  I  F  L  *  H  G  A  T  L  L  T  C  V  K  T  F  S  F  N  Y  F  T  T  T  C  Y  F  V  Q  R  *  I  G  N  I  M  S  Y  P  K  *  F  E  F  N  A  E  L  P  D  *  W  T  N  F  A  F  T </second_frame>
            <third_frame>   S  R  T  S  T  Q  G  Q  D  E  F  M  N  E  V  M  Y  I  V  K  L  Q  H  R  N  L  V  K  I  L  G  C  C  I  E  G  E  E  R  M  L  I  Y  E  Y  M  P  S  G  S  L  D  S  F  I  F   : D  D  T  R  S  T  V  L  D  W  S  K  R  F  H  I  I  N  G  I  A  R  G  L  V  Y  L  H  Q  D  S  Q  L  R  I  I  H  R  D  L  K  A  N  N  I  L  L  D  N  D  M  N  P  K  I  S  D  F  G  I  A  R  S  C  E  D  D  K  F  G  A  K  T  H  R  V  V  G  T  Y :   G  Y  L  S  P  E  Y  A  V  H  G  V  Y  S  V  K  S  D  V  F  S  F  G  V  L  V  L  E  I  V  S  G  K  G  N  R  K  F  S  H  P  D  H  N  L  N  L  L  G  H  :  A  W  T  L  Y  K  E  G  R  S  M  E  L  L  G  D  F  P  I  G  V  C  S  T  P  E  V  I  R  S  I  H  V  G  L  L  C  V  Q  H  R  P  E  D  R  P  S  M  S  S  V  V  M  M  L  N  N  E  G  V  L  P  P  A  K  Q  P  A  F  F  V  E  T  N  T  P  D  S  E  F  S  S  S  Q  H  A  H  S  T  V  N  E  I  T  I  T  T  L  D  P  R  *  *  I  L  H  C  K  *  K  S  F  I  L  F  F  F  V  A  M  *  G  E  S  S  H  S  S  Y  S  R  R  V  Q  S  S  S  C  N  M  V  Q  H  C  *  H  V  L  K  H  F  L  S  T  I  S  L  Q  L  V  T  L  Y  K  G  E  *  E  I  L  C  P  I  P  N  S  L  S  L  T  Q  N  C  P  I  D  G  P  I  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77312" stop="77480"/>
                    <exon start="77707" stop="77944"/>
                    <exon start="78019" stop="78169"/>
                    <exon start="78250" stop="78555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRTSTQGQDEFMNEVMYIVKLQHRNLVKILGCCIEGEERMLIYEYMPSGSLDSFIFDDTRSTVLDWSKRFHIINGIARGLVYLHQDSQLRIIHRDLKANNILLDNDMNPKISDFGIARSCEDDKFGAKTHRVVGTYGYLSPEYAVHGVYSVKSDVFSFGVLVLEIVSGKGNRKFSHPDHNLNLLGHAWTLYKEGRSMELLGDFPIGVCSTPEVIRSIHVGLLCVQHRPEDRPSMSSVVMMLNNEGVLPPAKQPAFFVETNTPDSEFSSSQHAHSTVNEITITTLDPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="79392" PGL_stop="78993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79392" e_stop="78993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79392" e_stop="78993" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79392" stop="78993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTCGCCTTGTTGCACCAGGAAAATGGATGTTGTGTGCATCATTTGTTCTGCCTGAGACAGTGGCATTTGCTAAATTAACTCTATAGGTAATTATTGTTTGAGTAATTGAAGACTTCGTCAACAACTACATGTTAGTGTCTTTCCCAGTTTCGGATGTAGATGAGTTTTATCGAAAGCATATATAGGAGAAAAATTATAATGAGAGTTTCTAAGTTGAATATCTTGTTCTGTATTCTGTTTTTAGATTTCTAGTTCTTTACTTGAGGCGTTGAGGTTGTGTATAAGCAGTTCACAAGCCTTGTCTGCAAGATTTTTTTTGTTTTGGTACTTCTCTTATTATGTTTTCTGTGTACTGTTGCTTCTTGAGGATGCTTGACTATAAAATAAACTGTTATAAG</gDNA_template>
            <first_frame> S  S  P  C  C  T  R  K  M  D  V  V  C  I  I  C  S  A  *  D  S  G  I  C  *  I  N  S  I  G  N  Y  C  L  S  N  *  R  L  R  Q  Q  L  H  V  S  V  F  P  S  F  G  C  R  *  V  L  S  K  A  Y  I  G  E  K  L  *  *  E  F  L  S  *  I  S  C  S  V  F  C  F  *  I  S  S  S  L  L  E  A  L  R  L  C  I  S  S  S  Q  A  L  S  A  R  F  F  L  F  W  Y  F  S  Y  Y  V  F  C  V  L  L  L  L  E  D  A  *  L  *  N  K  L  L  *  </first_frame>
            <second_frame>  V  R  L  V  A  P  G  K  W  M  L  C  A  S  F  V  L  P  E  T  V  A  F  A  K  L  T  L  *  V  I  I  V  *  V  I  E  D  F  V  N  N  Y  M  L  V  S  F  P  V  S  D  V  D  E  F  Y  R  K  H  I  *  E  K  N  Y  N  E  S  F  *  V  E  Y  L  V  L  Y  S  V  F  R  F  L  V  L  Y  L  R  R  *  G  C  V  *  A  V  H  K  P  C  L  Q  D  F  F  C  F  G  T  S  L  I  M  F  S  V  Y  C  C  F  L  R  M  L  D  Y  K  I  N  C  Y  K </second_frame>
            <third_frame>   F  A  L  L  H  Q  E  N  G  C  C  V  H  H  L  F  C  L  R  Q  W  H  L  L  N  *  L  Y  R  *  L  L  F  E  *  L  K  T  S  S  T  T  T  C  *  C  L  S  Q  F  R  M  *  M  S  F  I  E  S  I  Y  R  R  K  I  I  M  R  V  S  K  L  N  I  L  F  C  I  L  F  L  D  F  *  F  F  T  *  G  V  E  V  V  Y  K  Q  F  T  S  L  V  C  K  I  F  F  V  L  V  L  L  L  L  C  F  L  C  T  V  A  S  *  G  C  L  T  I  K  *  T  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0221M09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="83643" PGL_stop="83050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83643" e_stop="83050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83643" e_stop="83050" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83643" stop="83050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83629" stop="83053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAATTTGCAACAGAAAGGGCTAAAATGGCTCTGTATCCATTGCCCACCGCCATTATACTCAACAGAATCACCCCTTTTACTTCCCGCTTCTTCCCCAAACCTCTATCTTCTTCCCTTTCCGCCTCCGTCGCCGCCATTACCTCGACCTTACCACAACACCTTTCCTATGGACCTTCCCTCCACAAAGGCCACAAAACTTCACACCGAAACTCCGATGAAGAAAGCTTCACTAGAGTCTTCGATATCACTGCTTTACGAGTCCCTGCAGAACAATGTTTCTCACTCGAGAGCAGATTACGCGGACACCTTTTAAATTGGCCGCGCATTCGTAACATTGCTAGGGTTGCCGGTGATGATATTGATGACGACTTGAAGGAGTTTATTGGAAATGATAATACTACTGATGATGAAACACAAACAGTATTGGAACGGAGAATCTATGGGAAAGGTGAAGGTGATGGGGAGAAAATGTGTTCGGTATTGTATAGAGATAAGCTTGCAAAGACTTTCAATTCGATAGGATATGTAAAGTTTGAGAATTTGGCTAAAATATCGCGGCCGAAGAAGAAAAAATGGAAGAGAGAGGAAAAAGA</gDNA_template>
            <first_frame> L  I  C  N  R  K  G  *  N  G  S  V  S  I  A  H  R  H  Y  T  Q  Q  N  H  P  F  Y  F  P  L  L  P  Q  T  S  I  F  F  P  F  R  L  R  R  R  H  Y  L  D  L  T  T  T  P  F  L  W  T  F  P  P  Q  R  P  Q  N  F  T  P  K  L  R  *  R  K  L  H  *  S  L  R  Y  H  C  F  T  S  P  C  R  T  M  F  L  T  R  E  Q  I  T  R  T  P  F  K  L  A  A  H  S  *  H  C  *  G  C  R  *  *  Y  *  *  R  L  E  G  V  Y  W  K  *  *  Y  Y  *  *  *  N  T  N  S  I  G  T  E  N  L  W  E  R  *  R  *  W  G  E  N  V  F  G  I  V  *  R  *  A  C  K  D  F  Q  F  D  R  I  C  K  V  *  E  F  G  *  N  I  A  A  E  E  E  K  M  E  E  R  G  K  R </first_frame>
            <second_frame>  *  F  A  T  E  R  A  K  M  A  L  Y  P  L  P  T  A  I  I  L  N  R  I  T  P  F  T  S  R  F  F  P  K  P  L  S  S  S  L  S  A  S  V  A  A  I  T  S  T  L  P  Q  H  L  S  Y  G  P  S  L  H  K  G  H  K  T  S  H  R  N  S  D  E  E  S  F  T  R  V  F  D  I  T  A  L  R  V  P  A  E  Q  C  F  S  L  E  S  R  L  R  G  H  L  L  N  W  P  R  I  R  N  I  A  R  V  A  G  D  D  I  D  D  D  L  K  E  F  I  G  N  D  N  T  T  D  D  E  T  Q  T  V  L  E  R  R  I  Y  G  K  G  E  G  D  G  E  K  M  C  S  V  L  Y  R  D  K  L  A  K  T  F  N  S  I  G  Y  V  K  F  E  N  L  A  K  I  S  R  P  K  K  K  K  W  K  R  E  E  K   </second_frame>
            <third_frame>   N  L  Q  Q  K  G  L  K  W  L  C  I  H  C  P  P  P  L  Y  S  T  E  S  P  L  L  L  P  A  S  S  P  N  L  Y  L  L  P  F  P  P  P  S  P  P  L  P  R  P  Y  H  N  T  F  P  M  D  L  P  S  T  K  A  T  K  L  H  T  E  T  P  M  K  K  A  S  L  E  S  S  I  S  L  L  Y  E  S  L  Q  N  N  V  S  H  S  R  A  D  Y  A  D  T  F  *  I  G  R  A  F  V  T  L  L  G  L  P  V  M  I  L  M  T  T  *  R  S  L  L  E  M  I  I  L  L  M  M  K  H  K  Q  Y  W  N  G  E  S  M  G  K  V  K  V  M  G  R  K  C  V  R  Y  C  I  E  I  S  L  Q  R  L  S  I  R  *  D  M  *  S  L  R  I  W  L  K  Y  R  G  R  R  R  K  N  G  R  E  R  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83639" stop="83052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FATERAKMALYPLPTAIILNRITPFTSRFFPKPLSSSLSASVAAITSTLPQHLSYGPSLHKGHKTSHRNSDEESFTRVFDITALRVPAEQCFSLESRLRGHLLNWPRIRNIARVAGDDIDDDLKEFIGNDNTTDDETQTVLERRIYGKGEGDGEKMCSVLYRDKLAKTFNSIGYVKFENLAKISRPKKKKWKREEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="87450" PGL_stop="88360"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87450" e_stop="87719"/>
            <exon e_start="87894" e_stop="88360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87450" e_stop="87719" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87720" i_stop="87893" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87894" e_stop="88360" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87450" stop="87719"/>
              <exon start="87894" stop="88323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87460" stop="87719"/>
              <exon start="87894" stop="88348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87463" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87466" stop="87719"/>
              <exon start="87894" stop="88357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87466" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87473" stop="87719"/>
              <exon start="87894" stop="88300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87476" stop="87719"/>
              <exon start="87894" stop="88358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87477" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87477" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87477" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87477" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87478" stop="87719"/>
              <exon start="87894" stop="88353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87478" stop="87719"/>
              <exon start="87894" stop="88110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87478" stop="87719"/>
              <exon start="87894" stop="88095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87478" stop="87719"/>
              <exon start="87894" stop="88077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87479" stop="87719"/>
              <exon start="87894" stop="88337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87479" stop="87719"/>
              <exon start="87894" stop="88336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87479" stop="87719"/>
              <exon start="87894" stop="88112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87479" stop="87710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87482" stop="87719"/>
              <exon start="87894" stop="88304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87482" stop="87719"/>
              <exon start="87894" stop="88300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87482" stop="87719"/>
              <exon start="87894" stop="88292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87482" stop="87719"/>
              <exon start="87894" stop="88217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87483" stop="87719"/>
              <exon start="87894" stop="88077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87486" stop="87719"/>
              <exon start="87894" stop="88177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87487" stop="87719"/>
              <exon start="87894" stop="88357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87488" stop="87719"/>
              <exon start="87894" stop="88326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87488" stop="87719"/>
              <exon start="87894" stop="88300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87488" stop="87719"/>
              <exon start="87894" stop="88145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87489" stop="87719"/>
              <exon start="87894" stop="88355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87490" stop="87719"/>
              <exon start="87894" stop="88223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87490" stop="87719"/>
              <exon start="87894" stop="87937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87493" stop="87719"/>
              <exon start="87894" stop="88135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87495" stop="87719"/>
              <exon start="87894" stop="88356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87496" stop="87719"/>
              <exon start="87894" stop="88356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87503" stop="87719"/>
              <exon start="87894" stop="88142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87507" stop="87719"/>
              <exon start="87894" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87508" stop="87719"/>
              <exon start="87894" stop="88216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87508" stop="87719"/>
              <exon start="87894" stop="88094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87523" stop="87719"/>
              <exon start="87894" stop="88291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="87719"/>
              <exon start="87894" stop="88360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="87719"/>
              <exon start="87894" stop="87925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87539" stop="87719"/>
              <exon start="87894" stop="88177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87621" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87625" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87659" stop="87719"/>
              <exon start="87894" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87684" stop="87719"/>
              <exon start="87894" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87910" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87931" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87939" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87939" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87942" stop="88297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87957" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88072" stop="88354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226053" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGAATCAATATCACTCACCGTTTCTCTCTATACAGCATAAGTCCTATTCATATTTTTTGTGTGTTATACAGAGATTCCGATGGCAGGAAGAGGCAAGACTCTTGGTTCCGGTGCAGCAAAGAAGGCTCAATCTCGGAGTAGCAAAGCCGGTCTTCAATTTCCGGTCGGTCGTATTGCTCGTTTTCTGAAAGCCGGCAAGTATGCCGAGCGTGTTGGTGCTGGAGCTCCCGTGTACCTTGCAGCTGTTCTCGAATACCTTGCTGCTGAG : GTGCTTGAATTAGCTGGAAATGCAGCTAGGGATAACAAGAAGACTAGGATAGTCCCAAGGCATATTCAGTTGGCTGTGAGGAACGATGAAGAGCTGAGCAAGCTGCTTGGTGATGTGACCATTGCTAATGGTGGTGTTATGCCCAACATCCATAACCTTTTGCTTCCTAAGAAAGCTGGCTCATCAAAGCCCTCTGCAGATGAAGATTAGGTGGAAGGATAAGAGAAGGTTTCTAGGGTTGAGGGTTAAAGTTGGTTTTTTAGTAATTGGTGTTTCTGGGTCTTAGATTCCATAGATATTAGGTGAAATCAATTATGTTTTTCTGTTGGTTTAGTCGAAGCTTCTAGGTTTTATGGTAGTCTGTATATATAAATGAAGGGATGAATGGAAGACTATGTTCTTAAATTGTCTCTCTTTGTTTCCATTTTTAATGAAATATCAACTCAATGAGTTCTATCTTCGCAGTT</gDNA_template>
            <first_frame> D  E  S  I  S  L  T  V  S  L  Y  T  A  *  V  L  F  I  F  F  V  C  Y  T  E  I  P  M  A  G  R  G  K  T  L  G  S  G  A  A  K  K  A  Q  S  R  S  S  K  A  G  L  Q  F  P  V  G  R  I  A  R  F  L  K  A  G  K  Y  A  E  R  V  G  A  G  A  P  V  Y  L  A  A  V  L  E  Y  L  A  A  E  :  V  L  E  L  A  G  N  A  A  R  D  N  K  K  T  R  I  V  P  R  H  I  Q  L  A  V  R  N  D  E  E  L  S  K  L  L  G  D  V  T  I  A  N  G  G  V  M  P  N  I  H  N  L  L  L  P  K  K  A  G  S  S  K  P  S  A  D  E  D  *  V  E  G  *  E  K  V  S  R  V  E  G  *  S  W  F  F  S  N  W  C  F  W  V  L  D  S  I  D  I  R  *  N  Q  L  C  F  S  V  G  L  V  E  A  S  R  F  Y  G  S  L  Y  I  *  M  K  G  *  M  E  D  Y  V  L  K  L  S  L  F  V  S  I  F  N  E  I  S  T  Q  *  V  L  S  S  Q   </first_frame>
            <second_frame>  M  N  Q  Y  H  S  P  F  L  S  I  Q  H  K  S  Y  S  Y  F  L  C  V  I  Q  R  F  R  W  Q  E  E  A  R  L  L  V  P  V  Q  Q  R  R  L  N  L  G  V  A  K  P  V  F  N  F  R  S  V  V  L  L  V  F  *  K  P  A  S  M  P  S  V  L  V  L  E  L  P  C  T  L  Q  L  F  S  N  T  L  L  L  R :   C  L  N  *  L  E  M  Q  L  G  I  T  R  R  L  G  *  S  Q  G  I  F  S  W  L  *  G  T  M  K  S  *  A  S  C  L  V  M  *  P  L  L  M  V  V  L  C  P  T  S  I  T  F  C  F  L  R  K  L  A  H  Q  S  P  L  Q  M  K  I  R  W  K  D  K  R  R  F  L  G  L  R  V  K  V  G  F  L  V  I  G  V  S  G  S  *  I  P  *  I  L  G  E  I  N  Y  V  F  L  L  V  *  S  K  L  L  G  F  M  V  V  C  I  Y  K  *  R  D  E  W  K  T  M  F  L  N  C  L  S  L  F  P  F  L  M  K  Y  Q  L  N  E  F  Y  L  R  S  </second_frame>
            <third_frame>   *  I  N  I  T  H  R  F  S  L  Y  S  I  S  P  I  H  I  F  C  V  L  Y  R  D  S  D  G  R  K  R  Q  D  S  W  F  R  C  S  K  E  G  S  I  S  E  *  Q  S  R  S  S  I  S  G  R  S  Y  C  S  F  S  E  S  R  Q  V  C  R  A  C  W  C  W  S  S  R  V  P  C  S  C  S  R  I  P  C  C  *   : G  A  *  I  S  W  K  C  S  *  G  *  Q  E  D  *  D  S  P  K  A  Y  S  V  G  C  E  E  R  *  R  A  E  Q  A  A  W  *  C  D  H  C  *  W  W  C  Y  A  Q  H  P  *  P  F  A  S  *  E  S  W  L  I  K  A  L  C  R  *  R  L  G  G  R  I  R  E  G  F  *  G  *  G  L  K  L  V  F  *  *  L  V  F  L  G  L  R  F  H  R  Y  *  V  K  S  I  M  F  F  C  W  F  S  R  S  F  *  V  L  W  *  S  V  Y  I  N  E  G  M  N  G  R  L  C  S  *  I  V  S  L  C  F  H  F  *  *  N  I  N  S  M  S  S  I  F  A  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87492" stop="87719"/>
                    <exon start="87894" stop="88103"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLFIFFVCYTEIPMAGRGKTLGSGAAKKAQSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKPSADED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="92283" PGL_stop="93321"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92283" e_stop="92555"/>
            <exon e_start="92869" e_stop="93321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92283" e_stop="92555" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92556" i_stop="92868" i_length="313"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92869" e_stop="93321" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92283" stop="92555"/>
              <exon start="92869" stop="93321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGAAATTGAATCATTTTCGCCCTTGTTTGCTTTCATACATTAGTTTTGTTTATTGCCGTTTTTCAATCTTTCAGCACCTTTACTGCAAAATTCAAAGCAAACGGTAGTAGATGTAGAAGAATGTTGTTTTGAGTTTCAATTCACGATCCCACATCCATAAATTTCTCCGACATCCCATTCCCCCTTTCTCTCTTTGTTACCATAATTTCAAATGGCTCCTAAGAACCAGAACAAGCCGCCACTTCGTACTCTTTCAGCACTCCCTTCTGAT : AGTAACTACACAGCAGGTGAGGTTTCATTAGAGAAGAGAAGGAGAATAGGGAATCCAAAAATACCGTCCACAGCTACTGGTGCAAGAACCCGGCAGGCATTAGCAGTGGTGAATGAGGTTGCAGATGTGCCTCCCGCTAGTGGTCCGCCAAGTAATGCAGGTTCAGACGGCGGGATAGTTGAGTTTAGCAAAGAAGAAGTTGAAGCTTTACTCACTGAGAAATTGAAAACCAAGAACAAGTATAATACAAAGGTAAGTGGATGAACTATTCTTCAGATTAATGGTAATACTGGTATGAATGTGGTTGTGGTTTTGGTTATTTTGTTAATTAAGGTGCTAACAGTAAAGTTAACAGAAGTAGCCAATTCTGTGCGTGGAAAGTTAACTGTTTTCATATTAACTGAATATGTATCTGCTTAATGTATATTGATGCAAAGATTTCTACTACTTCTA</gDNA_template>
            <first_frame> *  E  I  E  S  F  S  P  L  F  A  F  I  H  *  F  C  L  L  P  F  F  N  L  S  A  P  L  L  Q  N  S  K  Q  T  V  V  D  V  E  E  C  C  F  E  F  Q  F  T  I  P  H  P  *  I  S  P  T  S  H  S  P  F  L  S  L  L  P  *  F  Q  M  A  P  K  N  Q  N  K  P  P  L  R  T  L  S  A  L  P  S  D  :  S  N  Y  T  A  G  E  V  S  L  E  K  R  R  R  I  G  N  P  K  I  P  S  T  A  T  G  A  R  T  R  Q  A  L  A  V  V  N  E  V  A  D  V  P  P  A  S  G  P  P  S  N  A  G  S  D  G  G  I  V  E  F  S  K  E  E  V  E  A  L  L  T  E  K  L  K  T  K  N  K  Y  N  T  K  V  S  G  *  T  I  L  Q  I  N  G  N  T  G  M  N  V  V  V  V  L  V  I  L  L  I  K  V  L  T  V  K  L  T  E  V  A  N  S  V  R  G  K  L  T  V  F  I  L  T  E  Y  V  S  A  *  C  I  L  M  Q  R  F  L  L  L  L </first_frame>
            <second_frame>  E  K  L  N  H  F  R  P  C  L  L  S  Y  I  S  F  V  Y  C  R  F  S  I  F  Q  H  L  Y  C  K  I  Q  S  K  R  *  *  M  *  K  N  V  V  L  S  F  N  S  R  S  H  I  H  K  F  L  R  H  P  I  P  P  F  S  L  C  Y  H  N  F  K  W  L  L  R  T  R  T  S  R  H  F  V  L  F  Q  H  S  L  L  I :   V  T  T  Q  Q  V  R  F  H  *  R  R  E  G  E  *  G  I  Q  K  Y  R  P  Q  L  L  V  Q  E  P  G  R  H  *  Q  W  *  M  R  L  Q  M  C  L  P  L  V  V  R  Q  V  M  Q  V  Q  T  A  G  *  L  S  L  A  K  K  K  L  K  L  Y  S  L  R  N  *  K  P  R  T  S  I  I  Q  R  *  V  D  E  L  F  F  R  L  M  V  I  L  V  *  M  W  L  W  F  W  L  F  C  *  L  R  C  *  Q  *  S  *  Q  K  *  P  I  L  C  V  E  S  *  L  F  S  Y  *  L  N  M  Y  L  L  N  V  Y  *  C  K  D  F  Y  Y  F   </second_frame>
            <third_frame>   R  N  *  I  I  F  A  L  V  C  F  H  T  L  V  L  F  I  A  V  F  Q  S  F  S  T  F  T  A  K  F  K  A  N  G  S  R  C  R  R  M  L  F  *  V  S  I  H  D  P  T  S  I  N  F  S  D  I  P  F  P  L  S  L  F  V  T  I  I  S  N  G  S  *  E  P  E  Q  A  A  T  S  Y  S  F  S  T  P  F  *   : *  *  L  H  S  R  *  G  F  I  R  E  E  K  E  N  R  E  S  K  N  T  V  H  S  Y  W  C  K  N  P  A  G  I  S  S  G  E  *  G  C  R  C  A  S  R  *  W  S  A  K  *  C  R  F  R  R  R  D  S  *  V  *  Q  R  R  S  *  S  F  T  H  *  E  I  E  N  Q  E  Q  V  *  Y  K  G  K  W  M  N  Y  S  S  D  *  W  *  Y  W  Y  E  C  G  C  G  F  G  Y  F  V  N  *  G  A  N  S  K  V  N  R  S  S  Q  F  C  A  W  K  V  N  C  F  H  I  N  *  I  C  I  C  L  M  Y  I  D  A  K  I  S  T  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92490" stop="92555"/>
                    <exon start="92869" stop="93132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQMAPKNQNKPPLRTLSALPSDSNYTAGEVSLEKRRRIGNPKIPSTATGARTRQALAVVNEVADVPPASGPPSNAGSDGGIVEFSKEEVEALLTEKLKTKNKYNTKVSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="98553" PGL_stop="99181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98553" e_stop="98596"/>
            <exon e_start="98771" e_stop="99181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.807" e_score="0.977"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="98553" e_stop="98596" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.807">
            <gDNA_intron_boundary i_start="98597" i_stop="98770" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="98771" e_stop="99181" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98553" stop="98596"/>
              <exon start="98771" stop="99181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCATGTGCCTTTTAGGAATTCAAAGCTCACATACCTTCTCCAG : CCCTGTCTAGGTGGTAACTCGAAGACATTAATGTTTGTTAATGTTTCACCGGATCCTCCATCTGTGGGTGAATCCCTGTGTTCACTCCGATTTGCTGCACGGGTTAATGCTTGTGAGATTGGGATCCCAAGGCGTCAAACTAGCTTGCGTCCCATAGATTCTCGCCTAAGCATTGGCTAACATTTTAGCGGAACACTCGTTCTAGCTTTTAGAATTGTTTTGTCTGTAATTCTGTATGGCAGTTTGATATTTAACTGAGAAACTATATTACCTCTAACAACATCCACCTCCAATTTGTATAGTGGATAAAGTATTTTCTTTGTATCAGTAATAGCATATGGGGCTTTGTATTACTATACTTGTCATTTTTTATGAGGAGTTACCTGTGTGATAATTTACCTCTTCTTTTTT</gDNA_template>
            <first_frame> S  M  C  L  L  G  I  Q  S  S  H  T  F  S  S :   P  V  *  V  V  T  R  R  H  *  C  L  L  M  F  H  R  I  L  H  L  W  V  N  P  C  V  H  S  D  L  L  H  G  L  M  L  V  R  L  G  S  Q  G  V  K  L  A  C  V  P  *  I  L  A  *  A  L  A  N  I  L  A  E  H  S  F  *  L  L  E  L  F  C  L  *  F  C  M  A  V  *  Y  L  T  E  K  L  Y  Y  L  *  Q  H  P  P  P  I  C  I  V  D  K  V  F  S  L  Y  Q  *  *  H  M  G  L  C  I  T  I  L  V  I  F  Y  E  E  L  P  V  *  *  F  T  S  S  F   </first_frame>
            <second_frame>  A  C  A  F  *  E  F  K  A  H  I  P  S  P   : A  L  S  R  W  *  L  E  D  I  N  V  C  *  C  F  T  G  S  S  I  C  G  *  I  P  V  F  T  P  I  C  C  T  G  *  C  L  *  D  W  D  P  K  A  S  N  *  L  A  S  H  R  F  S  P  K  H  W  L  T  F  *  R  N  T  R  S  S  F  *  N  C  F  V  C  N  S  V  W  Q  F  D  I  *  L  R  N  Y  I  T  S  N  N  I  H  L  Q  F  V  *  W  I  K  Y  F  L  C  I  S  N  S  I  W  G  F  V  L  L  Y  L  S  F  F  M  R  S  Y  L  C  D  N  L  P  L  L  F  </second_frame>
            <third_frame>   H  V  P  F  R  N  S  K  L  T  Y  L  L  Q  :  P  C  L  G  G  N  S  K  T  L  M  F  V  N  V  S  P  D  P  P  S  V  G  E  S  L  C  S  L  R  F  A  A  R  V  N  A  C  E  I  G  I  P  R  R  Q  T  S  L  R  P  I  D  S  R  L  S  I  G  *  H  F  S  G  T  L  V  L  A  F  R  I  V  L  S  V  I  L  Y  G  S  L  I  F  N  *  E  T  I  L  P  L  T  T  S  T  S  N  L  Y  S  G  *  S  I  F  F  V  S  V  I  A  Y  G  A  L  Y  Y  Y  T  C  H  F  L  *  G  V  T  C  V  I  I  Y  L  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98555" stop="98596"/>
                    <exon start="98771" stop="98950"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVPFRNSKLTYLLQPCLGGNSKTLMFVNVSPDPPSVGESLCSLRFAARVNACEIGIPRRQTSLRPIDSRLSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="99583" PGL_stop="100808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99583" e_stop="100808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="99583" e_stop="100808" e_length="1226"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99583" stop="100312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99583" stop="99971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99652" stop="100171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100094" stop="100808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTGCAAGTATTTTCTTTGCAAAAACTCTATTCCCTTGGACAAGAATTGACTTCAAATGGCTTCTAATCTTGTAAAATTTCATTCTTCATTCCAGTTCAAGCTGAACACAACAAGTTCCTTAAGTTTTTTAGGATCAAAACAACAACTTAACAATCTTTATCACTCTATTTTCTTCACAAAACCCAAGTCAGATTTTTCACCTCTTCAATGTTCACTATCTTCTCCTACTCCACCTATAACTAAAGAAGATGCCGTTTCTCAAGCAAAATTCTCTCTGTCAACTACTTTAGAGAAACCCCTTAACAATCCCAAACTCATAGGGAAAATCAAGAAACTCAAACAACCAAGATTTCGTGTCGAAATTCCAGTTGTTGATGACTCCCCATCTGCATTAGCCCAACTTGCTTTTGACATTTTTGGAGAAATGCCCATCAAAAGAAAAGCCCCAAACATCAAGATTCTACTTTTATGGCCTAACCAAACCTTAACCCAAGCTGCACAAGCAGAATTTGAAAAGAAGAAATCTTCAAACCCCATCATTGAAAATTTAGATATTTCATCAAGAATTGAAATTTCTGCTGATGTGGTAGTGTTTATGGCTCCAGAGGCTTCAATATTGACTGTAATGAAGGAGATTTCTGATACATTGTACCCAATGCCTGTCGTGATTTTTAATCCTAAATGGGGTTTTGATGAAGAGAGTAGTTTTGGTGAGTTGAGTGGATTTGTAGGTTCATTTGAGGTTGTGTATTCATTTATGGGATTGGAAGTTAGAGGGATATTGAGTAATAGAAAAGGGGTGATGTTTAAATGTGTTAAAGATGGTGTTTTGAGTGGTGAGAAATGGTATGTGTTCGTCGAAGAAGATGGAGAGTTGAAAGTGGTTTCAAGGTTTAAAGCAAGGCCATCAATTGTTGAAGTTGAGAATGTTTTGTATAACTTGATGGCCGTGAATTCGCCAATCACGAAATCAGCTAAGTTCTTGAAAGATTTGGTGTCAAATGTTAGGGGGAAAAAGTAAAGCACAAGCAATTCAAGGTATTACAACTCACATCATTTCAACTTTAGGATAGCTATCCTTTGCAATGATATTATTGTTTTTTCGAGATTTTGTTCTTCCTAGAACAGTTACAGTATGAAGTCCATGTACTAGCTTTGCCAGGTTCAAAACTTTAACATGGAAGAACAAATAATAACCTATTGGCTGCATGAACTAAGCATC</gDNA_template>
            <first_frame> K  I  A  S  I  F  F  A  K  T  L  F  P  W  T  R  I  D  F  K  W  L  L  I  L  *  N  F  I  L  H  S  S  S  S  *  T  Q  Q  V  P  *  V  F  *  D  Q  N  N  N  L  T  I  F  I  T  L  F  S  S  Q  N  P  S  Q  I  F  H  L  F  N  V  H  Y  L  L  L  L  H  L  *  L  K  K  M  P  F  L  K  Q  N  S  L  C  Q  L  L  *  R  N  P  L  T  I  P  N  S  *  G  K  S  R  N  S  N  N  Q  D  F  V  S  K  F  Q  L  L  M  T  P  H  L  H  *  P  N  L  L  L  T  F  L  E  K  C  P  S  K  E  K  P  Q  T  S  R  F  Y  F  Y  G  L  T  K  P  *  P  K  L  H  K  Q  N  L  K  R  R  N  L  Q  T  P  S  L  K  I  *  I  F  H  Q  E  L  K  F  L  L  M  W  *  C  L  W  L  Q  R  L  Q  Y  *  L  *  *  R  R  F  L  I  H  C  T  Q  C  L  S  *  F  L  I  L  N  G  V  L  M  K  R  V  V  L  V  S  *  V  D  L  *  V  H  L  R  L  C  I  H  L  W  D  W  K  L  E  G  Y  *  V  I  E  K  G  *  C  L  N  V  L  K  M  V  F  *  V  V  R  N  G  M  C  S  S  K  K  M  E  S  *  K  W  F  Q  G  L  K  Q  G  H  Q  L  L  K  L  R  M  F  C  I  T  *  W  P  *  I  R  Q  S  R  N  Q  L  S  S  *  K  I  W  C  Q  M  L  G  G  K  S  K  A  Q  A  I  Q  G  I  T  T  H  I  I  S  T  L  G  *  L  S  F  A  M  I  L  L  F  F  R  D  F  V  L  P  R  T  V  T  V  *  S  P  C  T  S  F  A  R  F  K  T  L  T  W  K  N  K  *  *  P  I  G  C  M  N  *  A   </first_frame>
            <second_frame>  K  L  Q  V  F  S  L  Q  K  L  Y  S  L  G  Q  E  L  T  S  N  G  F  *  S  C  K  I  S  F  F  I  P  V  Q  A  E  H  N  K  F  L  K  F  F  R  I  K  T  T  T  *  Q  S  L  S  L  Y  F  L  H  K  T  Q  V  R  F  F  T  S  S  M  F  T  I  F  S  Y  S  T  Y  N  *  R  R  C  R  F  S  S  K  I  L  S  V  N  Y  F  R  E  T  P  *  Q  S  Q  T  H  R  E  N  Q  E  T  Q  T  T  K  I  S  C  R  N  S  S  C  *  *  L  P  I  C  I  S  P  T  C  F  *  H  F  W  R  N  A  H  Q  K  K  S  P  K  H  Q  D  S  T  F  M  A  *  P  N  L  N  P  S  C  T  S  R  I  *  K  E  E  I  F  K  P  H  H  *  K  F  R  Y  F  I  K  N  *  N  F  C  *  C  G  S  V  Y  G  S  R  G  F  N  I  D  C  N  E  G  D  F  *  Y  I  V  P  N  A  C  R  D  F  *  S  *  M  G  F  *  *  R  E  *  F  W  *  V  E  W  I  C  R  F  I  *  G  C  V  F  I  Y  G  I  G  S  *  R  D  I  E  *  *  K  R  G  D  V  *  M  C  *  R  W  C  F  E  W  *  E  M  V  C  V  R  R  R  R  W  R  V  E  S  G  F  K  V  *  S  K  A  I  N  C  *  S  *  E  C  F  V  *  L  D  G  R  E  F  A  N  H  E  I  S  *  V  L  E  R  F  G  V  K  C  *  G  E  K  V  K  H  K  Q  F  K  V  L  Q  L  T  S  F  Q  L  *  D  S  Y  P  L  Q  *  Y  Y  C  F  F  E  I  L  F  F  L  E  Q  L  Q  Y  E  V  H  V  L  A  L  P  G  S  K  L  *  H  G  R  T  N  N  N  L  L  A  A  *  T  K  H  </second_frame>
            <third_frame>   N  C  K  Y  F  L  C  K  N  S  I  P  L  D  K  N  *  L  Q  M  A  S  N  L  V  K  F  H  S  S  F  Q  F  K  L  N  T  T  S  S  L  S  F  L  G  S  K  Q  Q  L  N  N  L  Y  H  S  I  F  F  T  K  P  K  S  D  F  S  P  L  Q  C  S  L  S  S  P  T  P  P  I  T  K  E  D  A  V  S  Q  A  K  F  S  L  S  T  T  L  E  K  P  L  N  N  P  K  L  I  G  K  I  K  K  L  K  Q  P  R  F  R  V  E  I  P  V  V  D  D  S  P  S  A  L  A  Q  L  A  F  D  I  F  G  E  M  P  I  K  R  K  A  P  N  I  K  I  L  L  L  W  P  N  Q  T  L  T  Q  A  A  Q  A  E  F  E  K  K  K  S  S  N  P  I  I  E  N  L  D  I  S  S  R  I  E  I  S  A  D  V  V  V  F  M  A  P  E  A  S  I  L  T  V  M  K  E  I  S  D  T  L  Y  P  M  P  V  V  I  F  N  P  K  W  G  F  D  E  E  S  S  F  G  E  L  S  G  F  V  G  S  F  E  V  V  Y  S  F  M  G  L  E  V  R  G  I  L  S  N  R  K  G  V  M  F  K  C  V  K  D  G  V  L  S  G  E  K  W  Y  V  F  V  E  E  D  G  E  L  K  V  V  S  R  F  K  A  R  P  S  I  V  E  V  E  N  V  L  Y  N  L  M  A  V  N  S  P  I  T  K  S  A  K  F  L  K  D  L  V  S  N  V  R  G  K  K  *  S  T  S  N  S  R  Y  Y  N  S  H  H  F  N  F  R  I  A  I  L  C  N  D  I  I  V  F  S  R  F  C  S  S  *  N  S  Y  S  M  K  S  M  Y  *  L  C  Q  V  Q  N  F  N  M  E  E  Q  I  I  T  Y  W  L  H  E  L  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99636" stop="100607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQMASNLVKFHSSFQFKLNTTSSLSFLGSKQQLNNLYHSIFFTKPKSDFSPLQCSLSSPTPPITKEDAVSQAKFSLSTTLEKPLNNPKLIGKIKKLKQPRFRVEIPVVDDSPSALAQLAFDIFGEMPIKRKAPNIKILLLWPNQTLTQAAQAEFEKKKSSNPIIENLDISSRIEISADVVVFMAPEASILTVMKEISDTLYPMPVVIFNPKWGFDEESSFGELSGFVGSFEVVYSFMGLEVRGILSNRKGVMFKCVKDGVLSGEKWYVFVEEDGELKVVSRFKARPSIVEVENVLYNLMAVNSPITKSAKFLKDLVSNVRGKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="102632" PGL_stop="101676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102632" e_stop="102193"/>
            <exon e_start="102101" e_stop="101676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102632" e_stop="102193" e_length="440"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="102192" i_stop="102102" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="102101" e_stop="101676" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102632" stop="102193"/>
              <exon start="102101" stop="101720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102631" stop="102193"/>
              <exon start="102101" stop="102060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102588" stop="102193"/>
              <exon start="102101" stop="101676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGACAATATGCAGATTCAGGCCTTCTAAAAGCAAATCATTGCCTGCTTGTTTTTTCATCTCCGGGCTGTATGACACAGTATGCATTGCGCATGTGTTCTGAGCTAGATTCTATTGCAACCTTTCCTGCTATGGGCTCAACTTATGAGGAAGATCTTGAAACAAAATTAGTGGTAGAGGCAATCCAAAAGTGGAATATTTTCCAGAAACAAAATTACAAAGAACGAGTTGATAATGCTGATATATATGGTGAATTTGGATGTTCTGATAGCAGTAAAGTATTTCCTGAAGGAATAACCAAGGGAAACAGTCTCTCTTCAGAGACTAGGGACACATTTATTAAAGAAAAGATAAGATCTGAGCTAGGACATCATATATACATATCCGAAGCAGAACTCCAAATGCATAAACCTCATAATCAAGTGTGGGCAAAACCTGAG : GTAAGTTTTCGATCATTTGTCATGGATAGGATTCACTTGGATGACGAAGGTCGTGGAGAGGCTGAGGTTGAAGTAATACCAACTCGTATGGTTGAGGCCAAGTCAAAACGTTTATTTCCAGCATTGAACTTCACCATGGCAGAGGAACCGAGAAGGATAATGTTGGAACGACATGCCAAACGAGTAGTGCCTTTGTAAATGGTAGTGACAACACTAGCCTATATTATGTAAATGATATAAGAAGCTCCATGGAGACTACACAATCTAAGTGTGTAAATACTAACCTAGATATTACAGAAACTGTCACTCATTTAGAAGATGAAGCAGGTTAGTTGTTTATTTGAATTTGAAGGCAACGAAATGAATTGCAACTTTAATTTTTTTTTGCTTTTGTTAGTTGTTATCTATTTTGTTCTGAATTCAGTA</gDNA_template>
            <first_frame> L  D  N  M  Q  I  Q  A  F  *  K  Q  I  I  A  C  L  F  F  H  L  R  A  V  *  H  S  M  H  C  A  C  V  L  S  *  I  L  L  Q  P  F  L  L  W  A  Q  L  M  R  K  I  L  K  Q  N  *  W  *  R  Q  S  K  S  G  I  F  S  R  N  K  I  T  K  N  E  L  I  M  L  I  Y  M  V  N  L  D  V  L  I  A  V  K  Y  F  L  K  E  *  P  R  E  T  V  S  L  Q  R  L  G  T  H  L  L  K  K  R  *  D  L  S  *  D  I  I  Y  T  Y  P  K  Q  N  S  K  C  I  N  L  I  I  K  C  G  Q  N  L  R :   *  V  F  D  H  L  S  W  I  G  F  T  W  M  T  K  V  V  E  R  L  R  L  K  *  Y  Q  L  V  W  L  R  P  S  Q  N  V  Y  F  Q  H  *  T  S  P  W  Q  R  N  R  E  G  *  C  W  N  D  M  P  N  E  *  C  L  C  K  W  *  *  Q  H  *  P  I  L  C  K  *  Y  K  K  L  H  G  D  Y  T  I  *  V  C  K  Y  *  P  R  Y  Y  R  N  C  H  S  F  R  R  *  S  R  L  V  V  Y  L  N  L  K  A  T  K  *  I  A  T  L  I  F  F  C  F  C  *  L  L  S  I  L  F  *  I  Q   </first_frame>
            <second_frame>  *  T  I  C  R  F  R  P  S  K  S  K  S  L  P  A  C  F  F  I  S  G  L  Y  D  T  V  C  I  A  H  V  F  *  A  R  F  Y  C  N  L  S  C  Y  G  L  N  L  *  G  R  S  *  N  K  I  S  G  R  G  N  P  K  V  E  Y  F  P  E  T  K  L  Q  R  T  S  *  *  C  *  Y  I  W  *  I  W  M  F  *  *  Q  *  S  I  S  *  R  N  N  Q  G  K  Q  S  L  F  R  D  *  G  H  I  Y  *  R  K  D  K  I  *  A  R  T  S  Y  I  H  I  R  S  R  T  P  N  A  *  T  S  *  S  S  V  G  K  T  *   : G  K  F  S  I  I  C  H  G  *  D  S  L  G  *  R  R  S  W  R  G  *  G  *  S  N  T  N  S  Y  G  *  G  Q  V  K  T  F  I  S  S  I  E  L  H  H  G  R  G  T  E  K  D  N  V  G  T  T  C  Q  T  S  S  A  F  V  N  G  S  D  N  T  S  L  Y  Y  V  N  D  I  R  S  S  M  E  T  T  Q  S  K  C  V  N  T  N  L  D  I  T  E  T  V  T  H  L  E  D  E  A  G  *  L  F  I  *  I  *  R  Q  R  N  E  L  Q  L  *  F  F  F  A  F  V  S  C  Y  L  F  C  S  E  F  S  </second_frame>
            <third_frame>   R  Q  Y  A  D  S  G  L  L  K  A  N  H  C  L  L  V  F  S  S  P  G  C  M  T  Q  Y  A  L  R  M  C  S  E  L  D  S  I  A  T  F  P  A  M  G  S  T  Y  E  E  D  L  E  T  K  L  V  V  E  A  I  Q  K  W  N  I  F  Q  K  Q  N  Y  K  E  R  V  D  N  A  D  I  Y  G  E  F  G  C  S  D  S  S  K  V  F  P  E  G  I  T  K  G  N  S  L  S  S  E  T  R  D  T  F  I  K  E  K  I  R  S  E  L  G  H  H  I  Y  I  S  E  A  E  L  Q  M  H  K  P  H  N  Q  V  W  A  K  P  E  :  V  S  F  R  S  F  V  M  D  R  I  H  L  D  D  E  G  R  G  E  A  E  V  E  V  I  P  T  R  M  V  E  A  K  S  K  R  L  F  P  A  L  N  F  T  M  A  E  E  P  R  R  I  M  L  E  R  H  A  K  R  V  V  P  L  *  M  V  V  T  T  L  A  Y  I  M  *  M  I  *  E  A  P  W  R  L  H  N  L  S  V  *  I  L  T  *  I  L  Q  K  L  S  L  I  *  K  M  K  Q  V  S  C  L  F  E  F  E  G  N  E  M  N  C  N  F  N  F  F  L  L  L  L  V  V  I  Y  F  V  L  N  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102630" stop="102193"/>
                    <exon start="102101" stop="101904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQYADSGLLKANHCLLVFSSPGCMTQYALRMCSELDSIATFPAMGSTYEEDLETKLVVEAIQKWNIFQKQNYKERVDNADIYGEFGCSDSSKVFPEGITKGNSLSSETRDTFIKEKIRSELGHHIYISEAELQMHKPHNQVWAKPEVSFRSFVMDRIHLDDEGRGEAEVEVIPTRMVEAKSKRLFPALNFTMAEEPRRIMLERHAKRVVPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="108604" PGL_stop="107905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108604" e_stop="107905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="108604" e_stop="107905" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108604" stop="107905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108604" stop="107905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108603" stop="108068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTAATGTCATCGTTCTCCAATTGCTGAAAACCCCAAAACATGTCTGACCATACATGTTGTTATCGTTGCACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAACCTCAAAACCATCATGCTCTTTACATAATTTTTACTTACCTGCCCTTAACATATCTGATCATTCGAACACCACAAGATCCAATCATACTCTGTATTTTCAGCTCAATTTGAACAACAAGATGAAGGACAAAGGTGTTCGTTACGACGAGATTATATTAAGCTTCTTCTACTATGGTACAAATACAAGTATCCCAATTGGTAATAGCACAATAAATGGATTTTACCAAGGCCATGACAAGAAAGCAAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTTAAGAATGTTACAAATACATCAAAAGTGATTTTTAGGGTGGATTTGGCTACAAGAATAAGCTACAAGACTATTTTTTGGTTTAGCAAGAAACATAATTTTACTGTGGAAAATAGAACAATGGAAGTGGATAGTACAGGTAAATCAAGTGCACAACACATTCATTGCTATTTTATGGTTTTAGGTTTTCCTCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATAAATGACTGGCACTATTCAACTCAATATTTTCTTCCTTTTGGTTTC</gDNA_template>
            <first_frame> N  I  N  V  I  V  L  Q  L  L  K  T  P  K  H  V  *  P  Y  M  L  L  S  L  H  Q  I  H  I  N  C  R  L  N  S  S  L  Y  L  A  K  S  K  N  L  K  T  I  M  L  F  T  *  F  L  L  T  C  P  *  H  I  *  S  F  E  H  H  K  I  Q  S  Y  S  V  F  S  A  Q  F  E  Q  Q  D  E  G  Q  R  C  S  L  R  R  D  Y  I  K  L  L  L  L  W  Y  K  Y  K  Y  P  N  W  *  *  H  N  K  W  I  L  P  R  P  *  Q  E  S  K  E  K  R  E  T  G  N  S  E  N  G  L  G  C  C  F  *  E  C  Y  K  Y  I  K  S  D  F  *  G  G  F  G  Y  K  N  K  L  Q  D  Y  F  L  V  *  Q  E  T  *  F  Y  C  G  K  *  N  N  G  S  G  *  Y  R  *  I  K  C  T  T  H  S  L  L  F  Y  G  F  R  F  S  S  N  C  F  G  *  L  D  S  F  V  V  N  K  *  L  A  L  F  N  S  I  F  S  S  F  W  F  </first_frame>
            <second_frame>  I  L  M  S  S  F  S  N  C  *  K  P  Q  N  M  S  D  H  T  C  C  Y  R  C  T  K  F  I  L  T  A  G  L  T  A  L  F  I  W  L  S  L  R  T  S  K  P  S  C  S  L  H  N  F  Y  L  P  A  L  N  I  S  D  H  S  N  T  T  R  S  N  H  T  L  Y  F  Q  L  N  L  N  N  K  M  K  D  K  G  V  R  Y  D  E  I  I  L  S  F  F  Y  Y  G  T  N  T  S  I  P  I  G  N  S  T  I  N  G  F  Y  Q  G  H  D  K  K  A  K  K  K  G  K  L  E  I  Q  K  M  A  W  D  A  A  F  K  N  V  T  N  T  S  K  V  I  F  R  V  D  L  A  T  R  I  S  Y  K  T  I  F  W  F  S  K  K  H  N  F  T  V  E  N  R  T  M  E  V  D  S  T  G  K  S  S  A  Q  H  I  H  C  Y  F  M  V  L  G  F  P  L  I  V  L  V  S  L  I  L  L  L  *  I  N  D  W  H  Y  S  T  Q  Y  F  L  P  F  G  F </second_frame>
            <third_frame>   Y  *  C  H  R  S  P  I  A  E  N  P  K  T  C  L  T  I  H  V  V  I  V  A  P  N  S  Y  *  L  Q  A  *  Q  L  S  L  S  G  *  V  *  E  P  Q  N  H  H  A  L  Y  I  I  F  T  Y  L  P  L  T  Y  L  I  I  R  T  P  Q  D  P  I  I  L  C  I  F  S  S  I  *  T  T  R  *  R  T  K  V  F  V  T  T  R  L  Y  *  A  S  S  T  M  V  Q  I  Q  V  S  Q  L  V  I  A  Q  *  M  D  F  T  K  A  M  T  R  K  Q  R  K  K  G  N  W  K  F  R  K  W  L  G  M  L  L  L  R  M  L  Q  I  H  Q  K  *  F  L  G  W  I  W  L  Q  E  *  A  T  R  L  F  F  G  L  A  R  N  I  I  L  L  W  K  I  E  Q  W  K  W  I  V  Q  V  N  Q  V  H  N  T  F  I  A  I  L  W  F  *  V  F  L  *  L  F  W  L  A  *  F  F  C  C  K  *  M  T  G  T  I  Q  L  N  I  F  F  L  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108573" stop="107953"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPQNMSDHTCCYRCTKFILTAGLTALFIWLSLRTSKPSCSLHNFYLPALNISDHSNTTRSNHTLYFQLNLNNKMKDKGVRYDEIILSFFYYGTNTSIPIGNSTINGFYQGHDKKAKKKGKLEIQKMAWDAAFKNVTNTSKVIFRVDLATRISYKTIFWFSKKHNFTVENRTMEVDSTGKSSAQHIHCYFMVLGFPLIVLVSLILLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="114831" PGL_stop="108648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114831" e_stop="114827"/>
            <exon e_start="114750" e_stop="114672"/>
            <exon e_start="114595" e_stop="114545"/>
            <exon e_start="112755" e_stop="112660"/>
            <exon e_start="112431" e_stop="112328"/>
            <exon e_start="111969" e_stop="111800"/>
            <exon e_start="111680" e_stop="111603"/>
            <exon e_start="111384" e_stop="111262"/>
            <exon e_start="110808" e_stop="110720"/>
            <exon e_start="110502" e_stop="110397"/>
            <exon e_start="110281" e_stop="110184"/>
            <exon e_start="110069" e_stop="109815"/>
            <exon e_start="109632" e_stop="109549"/>
            <exon e_start="109449" e_stop="109111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.882" acc_prob="0.992" e_score="0.600"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.556" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.678" e_score="0.988"/>
          <exon-intron don_prob="0.685" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.957" e_score="0.992"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.589" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.609" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.959" e_score="0.996"/>
          <exon-intron don_prob="0.900" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="114831" e_stop="114827" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.882" acc_prob="0.992">
            <gDNA_intron_boundary i_start="114826" i_stop="114751" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114750" e_stop="114672" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="114595" e_stop="114545" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112755" e_stop="112660" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.556">
            <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112431" e_stop="112328" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="111969" e_stop="111800" e_length="170"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.678">
            <gDNA_intron_boundary i_start="111799" i_stop="111681" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="111680" e_stop="111603" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.685" acc_prob="0.972">
            <gDNA_intron_boundary i_start="111602" i_stop="111385" i_length="218"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="111384" e_stop="111262" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.949" acc_prob="0.957">
            <gDNA_intron_boundary i_start="111261" i_stop="110809" i_length="453"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="110808" e_stop="110720" e_length="89"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="110719" i_stop="110503" i_length="217"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="110502" e_stop="110397" e_length="106"/>
          </exon>
          <intron i_serial="10" don_prob="0.980" acc_prob="0.589">
            <gDNA_intron_boundary i_start="110396" i_stop="110282" i_length="115"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="110281" e_stop="110184" e_length="98"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.609">
            <gDNA_intron_boundary i_start="110183" i_stop="110070" i_length="114"/>
          </intron>
          <exon e_serial="12" e_score="0.996">
            <gDNA_exon_boundary e_start="110069" e_stop="109815" e_length="255"/>
          </exon>
          <intron i_serial="12" don_prob="0.988" acc_prob="0.959">
            <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="109632" e_stop="109549" e_length="84"/>
          </exon>
          <intron i_serial="13" don_prob="0.900" acc_prob="0.950">
            <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="109449" e_stop="109111" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114831" stop="114827"/>
              <exon start="114750" stop="114672"/>
              <exon start="114595" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111800"/>
              <exon start="111680" stop="111603"/>
              <exon start="111384" stop="111262"/>
              <exon start="110808" stop="110720"/>
              <exon start="110502" stop="110427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114589" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111375" stop="111262"/>
              <exon start="110808" stop="110720"/>
              <exon start="110502" stop="110411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110797" stop="110720"/>
              <exon start="110502" stop="110397"/>
              <exon start="110281" stop="110184"/>
              <exon start="110069" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110027" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253615" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109965" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109867" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAG : ATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG : GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG : GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG : GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG : GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAGTTG : GTCCATCTGATGGTTTTGAATTGGTGAAGGAGCATGACAAAAAAGTAATCCAGTGGAAACTCTCATTACACCAGATAG : GATTGGATGTGATTCGTACTGACCGGACACTTGTCTTTTATGAGAAACAAGAGAATCTATCAAAGCTTTGGGATATTTTGGCTGTTTATGCTTGGTTTGACAAAGAAGTTAGTTATTGTCAAG : GAATGAGTGATCTTTGTTCTCCCATGATTATTCTACTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAACGTATGATGAAGAGACTG : AGAAAAAATTTCAGAGCTACTGGGAACTCTGTTGGAGTGGAGGCGCAGCTAAGTTATCTAGCATCAATAACTCAAGTTATCGATCCCAAACTTCACCAGCACTTAG : AGACATTAGGTGGAGGAAATTACGTGTTTGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAG : ATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG : ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG : GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGACATTATAAA</gDNA_template>
            <first_frame> K  R :   F  L  R  S  F  Q  S  N  K  V  *  S  M  W  R  N  Y  G  A  S  A  D  S  F  Y  Q  :  V  R  P  E  C  A  D  D  V  P  E  T  K  F  R  I  K  :  V  G  K  T  L  S  S  R  R  W  H  A  A  F  T  P  E  G  Y  L  D  I  G  K  I  L  G  R  V  C  R  G  :  G  I  H  P  S  I  R  G  E  V  W  E  F  L  L  G  C  Y  D  S  K  S  T  F  E  E  R  E  Q  L  R  Q  R  R  R :   V  Q  Y  A  A  L  K  E  E  C  R  G  M  F  P  L  I  G  S  G  R  F  I  S  A  P  V  I  T  E  D  G  D  P  I  L  D  P  I  V  L  Q  E  L  N  A  A  K  E  P  T  S  A  G  Q  V   : G  P  S  D  G  F  E  L  V  K  E  H  D  K  K  V  I  Q  W  K  L  S  L  H  Q  I   : G  L  D  V  I  R  T  D  R  T  L  V  F  Y  E  K  Q  E  N  L  S  K  L  W  D  I  L  A  V  Y  A  W  F  D  K  E  V  S  Y  C  Q   : G  M  S  D  L  C  S  P  M  I  I  L  L  D  D  E  A  D  A  F  W  C  F  E  R  M  M  K  R  L  :  R  K  N  F  R  A  T  G  N  S  V  G  V  E  A  Q  L  S  Y  L  A  S  I  T  Q  V  I  D  P  K  L  H  Q  H  L   : E  T  L  G  G  G  N  Y  V  F  A  F  R  M  L  M  V  M  F  R  R  E  F  S  F  S  D  S  L  Y  L  W  E  :  M  M  W  S  L  E  Y  D  P  E  L  F  S  M  Y  E  E  D  P  D  L  T  A  E  N  S  R  R  A  K  V  K  S  I  R  Q  Y  G  K  Y  E  R  E  N  M  R  S  G  G  K  D  T  E  A  P  L  P  I  S  V  F  L  V  A  S  V  L  K  D  K  S  A  K  L  T  E  A  R  G  L  D  E  V  V  K  :  I  L  N  N  I  T  G  H  L  D  A  R  K  A  C  S  S  A  M  K  L  H  K  K  Y  L  K  K  :  A  A  N  T  N  R  *  S  S  R  G  E  Y  Y  V  I  F  S  L  N  L  T  T  T  S  S  R  C  W  P  R  R  Y  D  K  N  L  Y  L  Y  I  L  G  W  S  M  N  I  S  C  F  C  Y  C  S  Y  V  M  M  C  *  D  V  I  V  V  F  N  P  N  V  M  Y  K  D  T  L  P  K  F  V  L  *  S  Q  E  Q  N  N  V  P  Y  L  *  G  I  A  S  N  I  L  *  *  I  Y  S  C  F  Y  R  H  Y  K </first_frame>
            <second_frame>  K   : D  F  *  G  V  S  K  V  T  K  F  E  A  C  G  G  T  M  E  L  L  L  I  H  F  I  R :   S  V  L  N  V  L  M  M  F  L  K  P  S  L  E  S  R :   L  G  K  L  *  V  Q  E  D  G  M  L  H  L  P  P  K  V  I  L  I  *  A  K  Y  L  V  E  F  V  V  G :   E  S  I  H  Q  L  E  V  K  F  G  S  S  Y  W  A  V  M  I  Q  R  A  H  L  R  N  E  S  N  Y  D  N  V  G   : G  Y  S  M  Q  H  *  K  K  N  V  V  G  C  F  P  *  L  E  V  V  G  L  F  L  H  L  *  S  L  K  M  V  T  L  F  *  I  L  *  F  F  K  S  *  M  R  Q  K  N  Q  L  Q  L  V  K  L  :  V  H  L  M  V  L  N  W  *  R  S  M  T  K  K  *  S  S  G  N  S  H  Y  T  R  *  :  D  W  M  *  F  V  L  T  G  H  L  S  F  M  R  N  K  R  I  Y  Q  S  F  G  I  F  W  L  F  M  L  G  L  T  K  K  L  V  I  V  K  :  E  *  V  I  F  V  L  P  *  L  F  Y  L  M  M  K  Q  M  H  F  G  A  L  N  V  *  *  R  D  * :   E  K  I  S  E  L  L  G  T  L  L  E  W  R  R  S  *  V  I  *  H  Q  *  L  K  L  S  I  P  N  F  T  S  T  *  :  R  H  *  V  E  E  I  T  C  L  L  F  G  C  S  W  L  C  S  V  E  N  F  L  S  L  I  R  Y  I  F  G  R :   *  C  G  L  W  N  M  I  L  S  Y  F  P  C  M  K  K  T  L  T  *  L  L  K  I  L  D  E  Q  K  L  S  R  Y  V  S  M  G  N  M  R  E  K  T  *  E  V  E  V  K  I  Q  K  L  P  S  Q  F  L  F  S  *  *  P  A  S  *  R  T  R  V  R  S  *  Q  K  L  E  D  W  T  K  L  L  R :   S  *  I  I  L  L  D  T  W  M  P  E  R  L  A  V  A  L  *  S  F  T  R  S  I  L  R  R :   Q  P  T  L  I  G  S  R  A  E  A  S  T  M  *  Y  S  H  *  T  *  R  Q  H  L  L  V  A  G  Q  E  G  M  T  R  I  Y  I  Y  I  F  W  A  G  R  *  T  L  A  A  F  A  I  V  V  M  L  *  C  A  K  T  *  L  L  Y  S  I  Q  M  *  C  T  R  T  H  F  Q  S  L  Y  Y  N  L  R  N  K  T  M  F  H  I  C  K  G  *  L  Q  I  Y  Y  N  K  Y  T  H  V  F  I  D  I  I   </second_frame>
            <third_frame>   K  :  I  F  E  E  F  P  K  *  Q  S  L  K  H  V  E  E  L  W  S  F  C  *  F  I  L  S   : G  P  S  *  M  C  *  *  C  S  *  N  Q  V  *  N  Q   : G  W  E  N  F  K  F  K  K  M  A  C  C  I  Y  P  R  R  L  S  *  Y  R  Q  N  T  W  S  S  L  S  W   : G  N  P  S  I  N  *  R  *  S  L  G  V  L  T  G  L  L  *  F  K  E  H  I  *  G  T  R  A  I  T  T  T  S  E  :  G  T  V  C  S  I  E  R  R  M  S  W  D  V  S  L  N  W  K  W  S  V  Y  F  C  T  C  N  H  *  R  W  *  P  Y  S  R  S  Y  S  S  S  R  V  E  C  G  K  R  T  N  F  S  W  S  S  W :   S  I  *  W  F  *  I  G  E  G  A  *  Q  K  S  N  P  V  E  T  L  I  T  P  D  R :   I  G  C  D  S  Y  *  P  D  T  C  L  L  *  E  T  R  E  S  I  K  A  L  G  Y  F  G  C  L  C  L  V  *  Q  R  S  *  L  L  S  R :   N  E  *  S  L  F  S  H  D  Y  S  T  *  *  *  S  R  C  I  L  V  L  *  T  Y  D  E  E  T   : E  K  K  F  Q  S  Y  W  E  L  C  W  S  G  G  A  A  K  L  S  S  I  N  N  S  S  Y  R  S  Q  T  S  P  A  L  R :   D  I  R  W  R  K  L  R  V  C  F  S  D  A  H  G  Y  V  P  S  R  I  F  F  L  *  F  V  I  S  L  G   : D  D  V  V  S  G  I  *  S  *  V  I  F  H  V  *  R  R  P  *  L  D  C  *  K  F  *  T  S  K  S  *  V  D  T  S  V  W  E  I  *  E  R  K  H  E  K  W  R  *  R  Y  R  S  S  P  P  N  F  C  F  P  S  S  Q  R  P  E  G  Q  E  C  E  A  N  R  S  *  R  T  G  R  S  C  *   : D  P  E  *  Y  Y  W  T  L  G  C  Q  K  G  L  Q  *  R  Y  E  A  S  Q  E  V  S  *  E   : G  S  Q  H  *  *  V  V  E  Q  R  R  V  L  C  N  I  L  T  E  L  N  D  N  I  F  S  L  L  A  K  K  V  *  Q  E  S  I  F  I  Y  F  G  L  V  D  E  H  *  L  L  L  L  L  *  L  C  Y  D  V  L  R  R  N  C  C  I  Q  S  K  C  N  V  Q  G  H  T  S  K  V  C  T  I  I  S  G  T  K  Q  C  S  I  F  V  R  D  S  F  K  Y  I  I  I  N  I  L  M  F  L  *  T  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114716" stop="114672"/>
                    <exon start="114595" stop="114545"/>
                    <exon start="112755" stop="112660"/>
                    <exon start="112431" stop="112328"/>
                    <exon start="111969" stop="111800"/>
                    <exon start="111680" stop="111603"/>
                    <exon start="111384" stop="111262"/>
                    <exon start="110808" stop="110720"/>
                    <exon start="110502" stop="110397"/>
                    <exon start="110281" stop="110184"/>
                    <exon start="110069" stop="109815"/>
                    <exon start="109632" stop="109549"/>
                    <exon start="109449" stop="109429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1317</number_coding_nucleotides>
                  <number_encoded_amino_acids>439</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMWRNYGASADSFYQVRPECADDVPETKFRIKVGKTLSSRRWHAAFTPEGYLDIGKILGRVCRGGIHPSIRGEVWEFLLGCYDSKSTFEEREQLRQRRRVQYAALKEECRGMFPLIGSGRFISAPVITEDGDPILDPIVLQELNAAKEPTSAGQVGPSDGFELVKEHDKKVIQWKLSLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWFDKEVSYCQGMSDLCSPMIILLDDEADAFWCFERMMKRLRKNFRATGNSVGVEAQLSYLASITQVIDPKLHQHLETLGGGNYVFAFRMLMVMFRREFSFSDSLYLWEMMWSLEYDPELFSMYEEDPDLTAENSRRAKVKSIRQYGKYERENMRSGGKDTEAPLPISVFLVASVLKDKSAKLTEARGLDEVVKILNNITGHLDARKACSSAMKLHKKYLKKAANTNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="114797" e_stop="114672"/>
            <exon e_start="114595" e_stop="114545"/>
            <exon e_start="112755" e_stop="112660"/>
            <exon e_start="112431" e_stop="112328"/>
            <exon e_start="111969" e_stop="111800"/>
            <exon e_start="111680" e_stop="111649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.556" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.678" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114797" e_stop="114672" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="114671" i_stop="114596" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114595" e_stop="114545" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="114544" i_stop="112756" i_length="1789"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112755" e_stop="112660" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.556">
            <gDNA_intron_boundary i_start="112659" i_stop="112432" i_length="228"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112431" e_stop="112328" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.956">
            <gDNA_intron_boundary i_start="112327" i_stop="111970" i_length="358"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111969" e_stop="111800" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.678">
            <gDNA_intron_boundary i_start="111799" i_stop="111681" i_length="119"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111680" e_stop="111649" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114797" stop="114672"/>
              <exon start="114595" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114775" stop="114672"/>
              <exon start="114595" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111800"/>
              <exon start="111680" stop="111649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114775" stop="114672"/>
              <exon start="114595" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114774" stop="114672"/>
              <exon start="114595" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114589" stop="114545"/>
              <exon start="112755" stop="112660"/>
              <exon start="112431" stop="112328"/>
              <exon start="111969" stop="111911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGTTGTTGAAATTCTTGATCAAAGTTGTTGGTATTGAATTTTAGATTTTTGAGGAGTTTCCAAAGTAACAAAGTTTGAAGCATGTGGAGGAACTATGGAGCTTCTGCTGATTCATTTTATCAG : GTCCGTCCTGAATGTGCTGATGATGTTCCTGAAACCAAGTTTAGAATCAAG : GTTGGGAAAACTTTAAGTTCAAGAAGATGGCATGCTGCATTTACCCCCGAAGGTTATCTTGATATAGGCAAAATACTTGGTCGAGTTTGTCGTGGG : GGAATCCATCCATCAATTAGAGGTGAAGTTTGGGAGTTCTTACTGGGCTGTTATGATTCAAAGAGCACATTTGAGGAACGAGAGCAATTACGACAACGTCGGAG : GGTACAGTATGCAGCATTGAAAGAAGAATGTCGTGGGATGTTTCCCTTAATTGGAAGTGGTCGGTTTATTTCTGCACCTGTAATCACTGAAGATGGTGACCCTATTCTAGATCCTATAGTTCTTCAAGAGTTGAATGCGGCAAAAGAACCAACTTCAGCTGGTCAAGTTG : GTCCATCTGATGGTTTTGAATTGGTGAAGGAG</gDNA_template>
            <first_frame> S  C  C  *  N  S  *  S  K  L  L  V  L  N  F  R  F  L  R  S  F  Q  S  N  K  V  *  S  M  W  R  N  Y  G  A  S  A  D  S  F  Y  Q  :  V  R  P  E  C  A  D  D  V  P  E  T  K  F  R  I  K  :  V  G  K  T  L  S  S  R  R  W  H  A  A  F  T  P  E  G  Y  L  D  I  G  K  I  L  G  R  V  C  R  G  :  G  I  H  P  S  I  R  G  E  V  W  E  F  L  L  G  C  Y  D  S  K  S  T  F  E  E  R  E  Q  L  R  Q  R  R  R :   V  Q  Y  A  A  L  K  E  E  C  R  G  M  F  P  L  I  G  S  G  R  F  I  S  A  P  V  I  T  E  D  G  D  P  I  L  D  P  I  V  L  Q  E  L  N  A  A  K  E  P  T  S  A  G  Q  V   : G  P  S  D  G  F  E  L  V  K  E </first_frame>
            <second_frame>  L  V  V  E  I  L  D  Q  S  C  W  Y  *  I  L  D  F  *  G  V  S  K  V  T  K  F  E  A  C  G  G  T  M  E  L  L  L  I  H  F  I  R :   S  V  L  N  V  L  M  M  F  L  K  P  S  L  E  S  R :   L  G  K  L  *  V  Q  E  D  G  M  L  H  L  P  P  K  V  I  L  I  *  A  K  Y  L  V  E  F  V  V  G :   E  S  I  H  Q  L  E  V  K  F  G  S  S  Y  W  A  V  M  I  Q  R  A  H  L  R  N  E  S  N  Y  D  N  V  G   : G  Y  S  M  Q  H  *  K  K  N  V  V  G  C  F  P  *  L  E  V  V  G  L  F  L  H  L  *  S  L  K  M  V  T  L  F  *  I  L  *  F  F  K  S  *  M  R  Q  K  N  Q  L  Q  L  V  K  L  :  V  H  L  M  V  L  N  W  *  R   </second_frame>
            <third_frame>   L  L  L  K  F  L  I  K  V  V  G  I  E  F  *  I  F  E  E  F  P  K  *  Q  S  L  K  H  V  E  E  L  W  S  F  C  *  F  I  L  S   : G  P  S  *  M  C  *  *  C  S  *  N  Q  V  *  N  Q   : G  W  E  N  F  K  F  K  K  M  A  C  C  I  Y  P  R  R  L  S  *  Y  R  Q  N  T  W  S  S  L  S  W   : G  N  P  S  I  N  *  R  *  S  L  G  V  L  T  G  L  L  *  F  K  E  H  I  *  G  T  R  A  I  T  T  T  S  E  :  G  T  V  C  S  I  E  R  R  M  S  W  D  V  S  L  N  W  K  W  S  V  Y  F  C  T  C  N  H  *  R  W  *  P  Y  S  R  S  Y  S  S  S  R  V  E  C  G  K  R  T  N  F  S  W  S  S  W :   S  I  *  W  F  *  I  G  E  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114716" stop="114672"/>
                    <exon start="114595" stop="114545"/>
                    <exon start="112755" stop="112660"/>
                    <exon start="112431" stop="112328"/>
                    <exon start="111969" stop="111800"/>
                    <exon start="111680" stop="111649"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMWRNYGASADSFYQVRPECADDVPETKFRIKVGKTLSSRRWHAAFTPEGYLDIGKILGRVCRGGIHPSIRGEVWEFLLGCYDSKSTFEEREQLRQRRRVQYAALKEECRGMFPLIGSGRFISAPVITEDGDPILDPIVLQELNAAKEPTSAGQVGPSDGFELVKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110282" e_stop="110184"/>
            <exon e_start="110069" e_stop="109815"/>
            <exon e_start="109632" e_stop="109549"/>
            <exon e_start="109449" e_stop="109109"/>
            <exon e_start="108677" e_stop="108648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.609" e_score="0.980"/>
          <exon-intron don_prob="0.988" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.633"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="110282" e_stop="110184" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.609">
            <gDNA_intron_boundary i_start="110183" i_stop="110070" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110069" e_stop="109815" e_length="255"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.959">
            <gDNA_intron_boundary i_start="109814" i_stop="109633" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109632" e_stop="109549" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.950">
            <gDNA_intron_boundary i_start="109548" i_stop="109450" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109449" e_stop="109109" e_length="341"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109108" i_stop="108678" i_length="431"/>
          </intron>
          <exon e_serial="5" e_score="0.633">
            <gDNA_exon_boundary e_start="108677" e_stop="108648" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110282" stop="110184"/>
              <exon start="110069" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109109"/>
              <exon start="108677" stop="108648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110027" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253615" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109965" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109867" stop="109815"/>
              <exon start="109632" stop="109549"/>
              <exon start="109449" stop="109132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542681" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACATTAGGTGGAGGAAATTACGTGTTTGCTTTTCGGATGCTCATGGTTATGTTCCGTCGAGAATTTTCTTTCTCTGATTCGTTATATCTTTGGGAG : ATGATGTGGTCTCTGGAATATGATCCTGAGTTATTTTCCATGTATGAAGAAGACCCTGACTTGACTGCTGAAAATTCTAGACGAGCAAAAGTTAAGTCGATACGTCAGTATGGGAAATATGAGAGAGAAAACATGAGAAGTGGAGGTAAAGATACAGAAGCTCCCCTCCCAATTTCTGTTTTCCTAGTAGCCAGCGTCCTGAAGGACAAGAGTGCGAAGCTAACAGAAGCTAGAGGACTGGACGAAGTTGTTAAG : ATCCTGAATAATATTACTGGACACTTGGATGCCAGAAAGGCTTGCAGTAGCGCTATGAAGCTTCACAAGAAGTATCTTAAGAAG : GCAGCCAACACTAATAGGTAGTCGAGCAGAGGCGAGTACTATGTAATATTCTCACTGAACTTAACGACAACATCTTCTCGTTGCTGGCCAAGAAGGTATGACAAGAATCTATATTTATATATTTTGGGCTGGTCGATGAACATTAGCTGCTTTTGCTATTGTAGTTATGTTATGATGTGCTAAGACGTAATTGTTGTATTCAATCCAAATGTAATGTACAAGGACACACTTCCAAAGTTTGTACTATAATCTCAGGAACAAAACAATGTTCCATATTTGTAAGGGATAGCTTCAAATATATTATAATAAATATACTCATGTTTTTATAGACATTATAAATA : AAAAAGCAAAAAAAAATGGATTTTTCCCAG</gDNA_template>
            <first_frame> E  T  L  G  G  G  N  Y  V  F  A  F  R  M  L  M  V  M  F  R  R  E  F  S  F  S  D  S  L  Y  L  W  E  :  M  M  W  S  L  E  Y  D  P  E  L  F  S  M  Y  E  E  D  P  D  L  T  A  E  N  S  R  R  A  K  V  K  S  I  R  Q  Y  G  K  Y  E  R  E  N  M  R  S  G  G  K  D  T  E  A  P  L  P  I  S  V  F  L  V  A  S  V  L  K  D  K  S  A  K  L  T  E  A  R  G  L  D  E  V  V  K  :  I  L  N  N  I  T  G  H  L  D  A  R  K  A  C  S  S  A  M  K  L  H  K  K  Y  L  K  K  :  A  A  N  T  N  R  *  S  S  R  G  E  Y  Y  V  I  F  S  L  N  L  T  T  T  S  S  R  C  W  P  R  R  Y  D  K  N  L  Y  L  Y  I  L  G  W  S  M  N  I  S  C  F  C  Y  C  S  Y  V  M  M  C  *  D  V  I  V  V  F  N  P  N  V  M  Y  K  D  T  L  P  K  F  V  L  *  S  Q  E  Q  N  N  V  P  Y  L  *  G  I  A  S  N  I  L  *  *  I  Y  S  C  F  Y  R  H  Y  K  * :   K  S  K  K  K  W  I  F  P   </first_frame>
            <second_frame>  R  H  *  V  E  E  I  T  C  L  L  F  G  C  S  W  L  C  S  V  E  N  F  L  S  L  I  R  Y  I  F  G  R :   *  C  G  L  W  N  M  I  L  S  Y  F  P  C  M  K  K  T  L  T  *  L  L  K  I  L  D  E  Q  K  L  S  R  Y  V  S  M  G  N  M  R  E  K  T  *  E  V  E  V  K  I  Q  K  L  P  S  Q  F  L  F  S  *  *  P  A  S  *  R  T  R  V  R  S  *  Q  K  L  E  D  W  T  K  L  L  R :   S  *  I  I  L  L  D  T  W  M  P  E  R  L  A  V  A  L  *  S  F  T  R  S  I  L  R  R :   Q  P  T  L  I  G  S  R  A  E  A  S  T  M  *  Y  S  H  *  T  *  R  Q  H  L  L  V  A  G  Q  E  G  M  T  R  I  Y  I  Y  I  F  W  A  G  R  *  T  L  A  A  F  A  I  V  V  M  L  *  C  A  K  T  *  L  L  Y  S  I  Q  M  *  C  T  R  T  H  F  Q  S  L  Y  Y  N  L  R  N  K  T  M  F  H  I  C  K  G  *  L  Q  I  Y  Y  N  K  Y  T  H  V  F  I  D  I  I  N   : K  K  A  K  K  N  G  F  F  P  </second_frame>
            <third_frame>   D  I  R  W  R  K  L  R  V  C  F  S  D  A  H  G  Y  V  P  S  R  I  F  F  L  *  F  V  I  S  L  G   : D  D  V  V  S  G  I  *  S  *  V  I  F  H  V  *  R  R  P  *  L  D  C  *  K  F  *  T  S  K  S  *  V  D  T  S  V  W  E  I  *  E  R  K  H  E  K  W  R  *  R  Y  R  S  S  P  P  N  F  C  F  P  S  S  Q  R  P  E  G  Q  E  C  E  A  N  R  S  *  R  T  G  R  S  C  *   : D  P  E  *  Y  Y  W  T  L  G  C  Q  K  G  L  Q  *  R  Y  E  A  S  Q  E  V  S  *  E   : G  S  Q  H  *  *  V  V  E  Q  R  R  V  L  C  N  I  L  T  E  L  N  D  N  I  F  S  L  L  A  K  K  V  *  Q  E  S  I  F  I  Y  F  G  L  V  D  E  H  *  L  L  L  L  L  *  L  C  Y  D  V  L  R  R  N  C  C  I  Q  S  K  C  N  V  Q  G  H  T  S  K  V  C  T  I  I  S  G  T  K  Q  C  S  I  F  V  R  D  S  F  K  Y  I  I  I  N  I  L  M  F  L  *  T  L  *  I  :  K  K  Q  K  K  M  D  F  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110282" stop="110184"/>
                    <exon start="110069" stop="109815"/>
                    <exon start="109632" stop="109549"/>
                    <exon start="109449" stop="109429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETLGGGNYVFAFRMLMVMFRREFSFSDSLYLWEMMWSLEYDPELFSMYEEDPDLTAENSRRAKVKSIRQYGKYERENMRSGGKDTEAPLPISVFLVASVLKDKSAKLTEARGLDEVVKILNNITGHLDARKACSSAMKLHKKYLKKAANTNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="119634" PGL_stop="124637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119634" e_stop="119949"/>
            <exon e_start="120959" e_stop="121141"/>
            <exon e_start="121983" e_stop="122194"/>
            <exon e_start="122745" e_stop="122908"/>
            <exon e_start="123059" e_stop="123220"/>
            <exon e_start="123394" e_stop="123446"/>
            <exon e_start="123766" e_stop="123906"/>
            <exon e_start="124432" e_stop="124611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="0.997"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.572" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.021" acc_prob="0.203" e_score="1.000"/>
          <exon-intron don_prob="0.684" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="119634" e_stop="119949" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120959" e_stop="121141" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121983" e_stop="122194" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.572" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122195" i_stop="122744" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122745" e_stop="122908" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.021" acc_prob="0.203">
            <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123059" e_stop="123220" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.684" acc_prob="0.998">
            <gDNA_intron_boundary i_start="123221" i_stop="123393" i_length="173"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123394" e_stop="123446" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123766" e_stop="123906" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="124432" e_stop="124611" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119634" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122194"/>
              <exon start="122745" stop="122908"/>
              <exon start="123059" stop="123220"/>
              <exon start="123394" stop="123446"/>
              <exon start="123766" stop="123906"/>
              <exon start="124432" stop="124596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119658" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119698" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119896" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122194"/>
              <exon start="122745" stop="122868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120995" stop="121141"/>
              <exon start="121983" stop="122194"/>
              <exon start="122745" stop="122908"/>
              <exon start="123059" stop="123127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121018" stop="121141"/>
              <exon start="121983" stop="122191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123161" stop="123220"/>
              <exon start="123394" stop="123446"/>
              <exon start="123766" stop="123906"/>
              <exon start="124432" stop="124595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123162" stop="123220"/>
              <exon start="123394" stop="123446"/>
              <exon start="123766" stop="123906"/>
              <exon start="124432" stop="124611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTATGGAATAAAGAAGGTTTCTAATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG : GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG : GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG : ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAG : TTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG : GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG : GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATT</gDNA_template>
            <first_frame> C  Y  G  I  K  K  V  S  N  *  E  R  V  D  D  N  G  V  A  G  R  K  K  S  N  Q  L  I  G  F  G  V  R  K  I  E  T  P  R  *  R  D  I  Y  R  H  G  R  R  H  Y  *  F  I  L  V  V  I  I  F  N  T  P  *  G  L  T  F  L  T  Q  N  T  T  S  *  S  E  R  T  G  Y  G  H  W  N  D  A  L  L  I  Q  K  T  L  *  Y  F  T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S   : G  P  Y  C  *  F  *  Q  I  Y  I  P  F  G  *  T  M  G  Q  I  S  P  S  C  S  A  E  W  W  L  F  T  H  N  C  C  I  R  F  I  W  E  K  Y  I  T  A  C  S  S  S  S  G  Y  F  S  N  Y  *  C  H  K  D  F  W  I  K  P  L  Y  *  :  A  N  I  C  R  K  C  S  F  H  C  S  L  H  R  F  Q  P  M  Y  V  E  H  *  S  Y  I  F  S  C  C  F  R  N  S  *  F  E  I  *  C  C  V  N  R  S  S  *  S  F  N  L  G  *  R :   *  V  S  C  *  V  D  I  C  K  A  F  R  A  N  F  G  A  P  R  S  W  K  C  T  Y  C  S  N  W  W  T  R  C  K  E  C  *  E  L  Q  N  D  R  *  A  C  R  E  N  R  C  R  S :   W  C  H  S  C  C  S  G  C  W  I  C  S  Q  R  S  P   : G  W  P  N  W  E  N  C  C  P  R  I  V  Y  G  I  W  C  F  W  C  N  S  T  H  S  R  H  E  R  F  Q  D  H  C  C  C  K  *  R  C  R  C  P  H  I  P   : G  C  *  L  W  T  R  G  *  S  L  R  C  H  S  G  V  V  R  E  T  S  *  E  K  V  E  N  T  Q  V  S  V  I  Q  *  R  *  R  *  C  M  W  W  M  T  F  V  I  Q  E  *  Y  N  T  N  I  I  H  Y  </first_frame>
            <second_frame>  V  M  E  *  R  R  F  L  I  E  R  E  *  T  I  M  E  L  L  G  G  R  R  A  I  N  *  *  V  L  V  *  E  R  *  R  R  H  A  E  E  I  Y  T  D  T  A  D  A  I  I  N  L  Y  *  *  *  *  S  L  I  L  H  K  D  *  H  F  *  P  K  I  P  Q  V  E  A  S  E  L  D  M  A  I  G  T  M  L  S  L  F  R  K  L  S  N  T  S  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  :  V  L  I  A  D  S  D  K  F  T  Y  P  L  A  E  P  W  A  K  L  V  H  L  V  Q  Q  S  G  G  Y  S  H  I  I  A  A  S  G  S  F  G  K  N  I  L  P  R  A  A  A  L  L  D  I  S  P  I  T  D  V  T  K  I  S  G  S  N  L  F  I  R :   P  I  Y  A  G  N  A  L  S  T  V  R  Y  T  G  S  S  P  C  M  L  S  I  R  A  T  S  F  P  V  A  S  E  T  A  D  L  K  S  N  A  A  S  I  D  Q  V  D  L  S  T  L  D  E   : D  E  S  V  A  K  S  T  Y  V  K  L  S  A  Q  I  S  E  R  P  D  L  G  N  A  R  I  V  V  T  G  G  R  G  V  K  S  A  E  N  F  K  M  I  D  K  L  A  E  K  I  G  A  A   : V  G  A  T  R  A  A  V  D  A  G  F  V  P  N  D  L  Q  :  V  G  Q  T  G  K  I  V  A  P  E  L  Y  M  A  F  G  V  S  G  A  I  Q  H  I  A  G  M  R  D  S  K  I  I  V  A  V  N  K  D  A  D  A  P  I  F  Q  :  V  A  D  Y  G  L  V  G  D  L  F  D  V  I  P  E  L  L  E  K  L  P  E  K  K  *  K  I  H  R  S  L  *  S  N  K  D  E  D  D  V  C  G  G  *  H  L  L  S  R  N  N  I  I  L  I  S  F  I  I </second_frame>
            <third_frame>   L  W  N  K  E  G  F  *  L  R  E  S  R  R  *  W  S  C  W  E  E  E  E  Q  S  I  D  R  F  W  C  E  K  D  R  D  A  T  L  K  R  Y  I  Q  T  R  Q  T  P  L  L  I  Y  I  S  S  N  N  L  *  Y  S  I  R  T  D  I  F  D  P  K  Y  H  K  L  K  R  A  N  W  I  W  P  L  E  R  C  S  P  Y  S  E  N  S  L  I  L  H  G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R :   S  L  L  L  I  L  T  N  L  H  T  L  W  L  N  H  G  P  N  *  S  I  L  F  S  R  V  V  A  I  H  T  *  L  L  H  Q  V  H  L  G  K  I  Y  Y  R  V  Q  Q  L  F  W  I  F  L  Q  L  L  M  S  Q  R  F  L  D  Q  T  S  L  L   : G  Q  Y  M  Q  E  M  L  F  P  L  F  V  T  Q  V  P  A  H  V  C  *  A  L  E  L  H  L  F  L  L  L  Q  K  Q  L  I  *  N  L  M  L  R  Q  *  I  K  L  I  F  Q  P  W  M  K  :  M  S  Q  L  L  S  R  H  M  *  S  F  P  R  K  F  R  S  A  Q  I  L  E  M  H  V  L  *  *  L  V  D  E  V  *  R  V  L  R  T  S  K  *  *  I  S  L  Q  R  K  S  V  P  Q  :  L  V  P  L  V  L  Q  W  M  L  D  L  F  P  T  I  S  R :   L  A  K  L  G  K  L  L  P  Q  N  C  I  W  H  L  V  F  L  V  Q  F  N  T  *  Q  A  *  E  I  P  R  S  L  L  L  *  I  K  M  Q  M  P  P  Y  S  R :   L  L  I  M  D  S  W  V  I  S  S  M  S  F  R  S  C  *  R  N  F  L  R  K  S  R  K  Y  T  G  L  C  D  P  I  K  M  K  M  M  Y  V  V  D  D  I  C  Y  P  G  I  I  *  Y  *  Y  H  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119842" stop="119949"/>
                    <exon start="120959" stop="121141"/>
                    <exon start="121983" stop="122194"/>
                    <exon start="122745" stop="122908"/>
                    <exon start="123059" stop="123220"/>
                    <exon start="123394" stop="123446"/>
                    <exon start="123766" stop="123906"/>
                    <exon start="124432" stop="124509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKIPQVEASELDMAIGTMLSLFRKLSNTSRITPFRSLSTLVLAEHEGGLIKNSSLSAVEAAKSLGGDNSISLLLAGSGHSLKEAAEHAASSHPSVSQVLIADSDKFTYPLAEPWAKLVHLVQQSGGYSHIIAASGSFGKNILPRAAALLDISPITDVTKISGSNLFIRPIYAGNALSTVRYTGSSPCMLSIRATSFPVASETADLKSNAASIDQVDLSTLDEDESVAKSTYVKLSAQISERPDLGNARIVVTGGRGVKSAENFKMIDKLAEKIGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKIIVAVNKDADAPIFQVADYGLVGDLFDVIPELLEKLPEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119658" e_stop="119949"/>
            <exon e_start="120959" e_stop="121141"/>
            <exon e_start="121983" e_stop="122194"/>
            <exon e_start="122745" e_stop="122908"/>
            <exon e_start="123059" e_stop="123446"/>
            <exon e_start="123766" e_stop="123906"/>
            <exon e_start="124432" e_stop="124637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="0.942"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.572" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.021" acc_prob="0.203" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="119658" e_stop="119949" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120959" e_stop="121141" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="121142" i_stop="121982" i_length="841"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121983" e_stop="122194" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="0.572" acc_prob="0.994">
            <gDNA_intron_boundary i_start="122195" i_stop="122744" i_length="550"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122745" e_stop="122908" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.021" acc_prob="0.203">
            <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123059" e_stop="123446" e_length="388"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123766" e_stop="123906" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="124432" e_stop="124637" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119658" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119698" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119896" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="121983" stop="122194"/>
              <exon start="122745" stop="122868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120995" stop="121141"/>
              <exon start="121983" stop="122194"/>
              <exon start="122745" stop="122908"/>
              <exon start="123059" stop="123127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121018" stop="121141"/>
              <exon start="121983" stop="122191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122898" stop="122908"/>
              <exon start="123059" stop="123446"/>
              <exon start="123766" stop="123906"/>
              <exon start="124432" stop="124637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGAGAGAGAGTAGACGATAATGGAGTTGCTGGGAGGAAGAAGAGCAATCAATTGATAGGTTTTGGTGTGAGAAAGATAGAGACGCCACGCTGAAGAGATATATACAGACACGGCAGACGCCATTATTAATTTATATTAGTAGTAATAATCTTTAATACTCCATAAGGACTGACATTTTTGACCCAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG : GTCCTTATTGCTGATTCTGACAAATTTACATACCCTTTGGCTGAACCATGGGCCAAATTAGTCCATCTTGTTCAGCAGAGTGGTGGCTATTCACACATAATTGCTGCATCAGGTTCATTTGGGAAAAATATATTACCGCGTGCAGCAGCTCTTCTGGATATTTCTCCAATTACTGATGTCACAAAGATTTCTGGATCAAACCTCTTTATTAG : GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG : ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG : GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG : GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAGAC</gDNA_template>
            <first_frame> N  *  E  R  V  D  D  N  G  V  A  G  R  K  K  S  N  Q  L  I  G  F  G  V  R  K  I  E  T  P  R  *  R  D  I  Y  R  H  G  R  R  H  Y  *  F  I  L  V  V  I  I  F  N  T  P  *  G  L  T  F  L  T  Q  N  T  T  S  *  S  E  R  T  G  Y  G  H  W  N  D  A  L  L  I  Q  K  T  L  *  Y  F  T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S   : G  P  Y  C  *  F  *  Q  I  Y  I  P  F  G  *  T  M  G  Q  I  S  P  S  C  S  A  E  W  W  L  F  T  H  N  C  C  I  R  F  I  W  E  K  Y  I  T  A  C  S  S  S  S  G  Y  F  S  N  Y  *  C  H  K  D  F  W  I  K  P  L  Y  *  :  A  N  I  C  R  K  C  S  F  H  C  S  L  H  R  F  Q  P  M  Y  V  E  H  *  S  Y  I  F  S  C  C  F  R  N  S  *  F  E  I  *  C  C  V  N  R  S  S  *  S  F  N  L  G  *  R :   *  V  S  C  *  V  D  I  C  K  A  F  R  A  N  F  G  A  P  R  S  W  K  C  T  Y  C  S  N  W  W  T  R  C  K  E  C  *  E  L  Q  N  D  R  *  A  C  R  E  N  R  C  R  R  F  S  L  S  R  D  F  C  C  I  H  L  V  L  F  S  A  T  S  L  S  F  I  N  L  S  L  T  Y  F  K  F  L  A  I  T  C  I  I  L  I  S  I  C  F  D  L  I  I  K  L  D  Y  L  C  S  A  V  G  A  T  R  A  A  V  D  A  G  F  V  P  N  D  L  Q  :  V  G  Q  T  G  K  I  V  A  P  E  L  Y  M  A  F  G  V  S  G  A  I  Q  H  I  A  G  M  R  D  S  K  I  I  V  A  V  N  K  D  A  D  A  P  I  F  Q  :  V  A  D  Y  G  L  V  G  D  L  F  D  V  I  P  E  L  L  E  K  L  P  E  K  K  *  K  I  H  R  S  L  *  S  N  K  D  E  D  D  V  C  G  G  *  H  L  L  S  R  N  N  I  I  L  I  S  F  I  I  S  I  L  Q  P  Y  S  Q   </first_frame>
            <second_frame>  I  E  R  E  *  T  I  M  E  L  L  G  G  R  R  A  I  N  *  *  V  L  V  *  E  R  *  R  R  H  A  E  E  I  Y  T  D  T  A  D  A  I  I  N  L  Y  *  *  *  *  S  L  I  L  H  K  D  *  H  F  *  P  K  I  P  Q  V  E  A  S  E  L  D  M  A  I  G  T  M  L  S  L  F  R  K  L  S  N  T  S  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  :  V  L  I  A  D  S  D  K  F  T  Y  P  L  A  E  P  W  A  K  L  V  H  L  V  Q  Q  S  G  G  Y  S  H  I  I  A  A  S  G  S  F  G  K  N  I  L  P  R  A  A  A  L  L  D  I  S  P  I  T  D  V  T  K  I  S  G  S  N  L  F  I  R :   P  I  Y  A  G  N  A  L  S  T  V  R  Y  T  G  S  S  P  C  M  L  S  I  R  A  T  S  F  P  V  A  S  E  T  A  D  L  K  S  N  A  A  S  I  D  Q  V  D  L  S  T  L  D  E   : D  E  S  V  A  K  S  T  Y  V  K  L  S  A  Q  I  S  E  R  P  D  L  G  N  A  R  I  V  V  T  G  G  R  G  V  K  S  A  E  N  F  K  M  I  D  K  L  A  E  K  I  G  A  A  G  F  P  S  P  V  T  S  A  V  F  T  L  C  F  F  L  L  L  L  Y  P  L  S  I  S  P  *  H  I  S  N  S  *  Q  *  L  A  *  F  *  F  Q  S  A  L  I  *  S  L  N  W  I  T  S  V  L  Q  L  V  P  L  V  L  Q  W  M  L  D  L  F  P  T  I  S  R :   L  A  K  L  G  K  L  L  P  Q  N  C  I  W  H  L  V  F  L  V  Q  F  N  T  *  Q  A  *  E  I  P  R  S  L  L  L  *  I  K  M  Q  M  P  P  Y  S  R :   L  L  I  M  D  S  W  V  I  S  S  M  S  F  R  S  C  *  R  N  F  L  R  K  S  R  K  Y  T  G  L  C  D  P  I  K  M  K  M  M  Y  V  V  D  D  I  C  Y  P  G  I  I  *  Y  *  Y  H  S  L  F  Q  F  S  N  L  I  H  R  </second_frame>
            <third_frame>   L  R  E  S  R  R  *  W  S  C  W  E  E  E  E  Q  S  I  D  R  F  W  C  E  K  D  R  D  A  T  L  K  R  Y  I  Q  T  R  Q  T  P  L  L  I  Y  I  S  S  N  N  L  *  Y  S  I  R  T  D  I  F  D  P  K  Y  H  K  L  K  R  A  N  W  I  W  P  L  E  R  C  S  P  Y  S  E  N  S  L  I  L  H  G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R :   S  L  L  L  I  L  T  N  L  H  T  L  W  L  N  H  G  P  N  *  S  I  L  F  S  R  V  V  A  I  H  T  *  L  L  H  Q  V  H  L  G  K  I  Y  Y  R  V  Q  Q  L  F  W  I  F  L  Q  L  L  M  S  Q  R  F  L  D  Q  T  S  L  L   : G  Q  Y  M  Q  E  M  L  F  P  L  F  V  T  Q  V  P  A  H  V  C  *  A  L  E  L  H  L  F  L  L  L  Q  K  Q  L  I  *  N  L  M  L  R  Q  *  I  K  L  I  F  Q  P  W  M  K  :  M  S  Q  L  L  S  R  H  M  *  S  F  P  R  K  F  R  S  A  Q  I  L  E  M  H  V  L  *  *  L  V  D  E  V  *  R  V  L  R  T  S  K  *  *  I  S  L  Q  R  K  S  V  P  Q  V  F  P  L  P  *  L  L  L  Y  S  P  C  A  F  F  C  Y  F  F  I  L  Y  Q  S  L  L  N  I  F  Q  I  L  S  N  N  L  H  N  S  D  F  N  L  L  *  F  D  H  *  T  G  L  P  L  F  C  S  W  C  H  S  C  C  S  G  C  W  I  C  S  Q  R  S  P   : G  W  P  N  W  E  N  C  C  P  R  I  V  Y  G  I  W  C  F  W  C  N  S  T  H  S  R  H  E  R  F  Q  D  H  C  C  C  K  *  R  C  R  C  P  H  I  P   : G  C  *  L  W  T  R  G  *  S  L  R  C  H  S  G  V  V  R  E  T  S  *  E  K  V  E  N  T  Q  V  S  V  I  Q  *  R  *  R  *  C  M  W  W  M  T  F  V  I  Q  E  *  Y  N  T  N  I  I  H  Y  F  N  S  P  T  L  F  T  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119842" stop="119949"/>
                    <exon start="120959" stop="121141"/>
                    <exon start="121983" stop="122194"/>
                    <exon start="122745" stop="122908"/>
                    <exon start="123059" stop="123303"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKIPQVEASELDMAIGTMLSLFRKLSNTSRITPFRSLSTLVLAEHEGGLIKNSSLSAVEAAKSLGGDNSISLLLAGSGHSLKEAAEHAASSHPSVSQVLIADSDKFTYPLAEPWAKLVHLVQQSGGYSHIIAASGSFGKNILPRAAALLDISPITDVTKISGSNLFIRPIYAGNALSTVRYTGSSPCMLSIRATSFPVASETADLKSNAASIDQVDLSTLDEDESVAKSTYVKLSAQISERPDLGNARIVVTGGRGVKSAENFKMIDKLAEKIGAAGFPSPVTSAVFTLCFFLLLLYPLSISP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="119928" e_stop="119949"/>
            <exon e_start="120959" e_stop="121141"/>
            <exon e_start="122745" e_stop="122908"/>
            <exon e_start="123059" e_stop="123446"/>
            <exon e_start="123766" e_stop="123906"/>
            <exon e_start="124432" e_stop="124637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.021" acc_prob="0.203" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119928" e_stop="119949" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120959" e_stop="121141" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.994">
            <gDNA_intron_boundary i_start="121142" i_stop="122744" i_length="1603"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="122745" e_stop="122908" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.021" acc_prob="0.203">
            <gDNA_intron_boundary i_start="122909" i_stop="123058" i_length="150"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123059" e_stop="123446" e_length="388"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="123447" i_stop="123765" i_length="319"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123766" e_stop="123906" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="123907" i_stop="124431" i_length="525"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="124432" e_stop="124637" e_length="206"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119928" stop="119949"/>
              <exon start="120959" stop="121141"/>
              <exon start="122745" stop="122908"/>
              <exon start="123059" stop="123091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122898" stop="122908"/>
              <exon start="123059" stop="123446"/>
              <exon start="123766" stop="123906"/>
              <exon start="124432" stop="124637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAG : GCCAATATATGCAGGAAATGCTCTTTCCACTGTTCGTTACACAGGTTCCAGCCCATGTATGTTGAGCATTAGAGCTACATCTTTTCCTGTTGCTTCAGAAACAGCTGATTTGAAATCTAATGCTGCGTCAATAGATCAAGTTGATCTTTCAACCTTGGATGAAG : ATGAGTCAGTTGCTAAGTCGACATATGTAAAGCTTTCCGCGCAAATTTCGGAGCGCCCAGATCTTGGAAATGCACGTATTGTAGTAACTGGTGGACGAGGTGTAAAGAGTGCTGAGAACTTCAAAATGATAGATAAGCTTGCAGAGAAAATCGGTGCCGCAGGTTTTCCCTCTCCCGTGACTTCTGCTGTATTCACCTTGTGCTTTTTTCTGCTACTTCTTTATCCTTTATCAATCTCTCCTTAACATATTTCAAATTCTTAGCAATAACTTGCATAATTCTGATTTCAATCTGCTTTGATTTGATCATTAAACTGGATTACCTCTGTTCTGCAGTTGGTGCCACTCGTGCTGCAGTGGATGCTGGATTTGTTCCCAACGATCTCCAG : GTTGGCCAAACTGGGAAAATTGTTGCCCCAGAATTGTATATGGCATTTGGTGTTTCTGGTGCAATTCAACACATAGCAGGCATGAGAGATTCCAAGATCATTGTTGCTGTAAATAAAGATGCAGATGCCCCCATATTCCAG : GTTGCTGATTATGGACTCGTGGGTGATCTCTTCGATGTCATTCCGGAGTTGTTAGAGAAACTTCCTGAGAAAAAGTAGAAAATACACAGGTCTCTGTGATCCAATAAAGATGAAGATGATGTATGTGGTGGATGACATTTGTTATCCAGGAATAATATAATACTAATATCATTCATTATTTCAATTCTCCAACCTTATTCACAGAC</gDNA_template>
            <first_frame> T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S   : G  Q  Y  M  Q  E  M  L  F  P  L  F  V  T  Q  V  P  A  H  V  C  *  A  L  E  L  H  L  F  L  L  L  Q  K  Q  L  I  *  N  L  M  L  R  Q  *  I  K  L  I  F  Q  P  W  M  K  :  M  S  Q  L  L  S  R  H  M  *  S  F  P  R  K  F  R  S  A  Q  I  L  E  M  H  V  L  *  *  L  V  D  E  V  *  R  V  L  R  T  S  K  *  *  I  S  L  Q  R  K  S  V  P  Q  V  F  P  L  P  *  L  L  L  Y  S  P  C  A  F  F  C  Y  F  F  I  L  Y  Q  S  L  L  N  I  F  Q  I  L  S  N  N  L  H  N  S  D  F  N  L  L  *  F  D  H  *  T  G  L  P  L  F  C  S  W  C  H  S  C  C  S  G  C  W  I  C  S  Q  R  S  P   : G  W  P  N  W  E  N  C  C  P  R  I  V  Y  G  I  W  C  F  W  C  N  S  T  H  S  R  H  E  R  F  Q  D  H  C  C  C  K  *  R  C  R  C  P  H  I  P   : G  C  *  L  W  T  R  G  *  S  L  R  C  H  S  G  V  V  R  E  T  S  *  E  K  V  E  N  T  Q  V  S  V  I  Q  *  R  *  R  *  C  M  W  W  M  T  F  V  I  Q  E  *  Y  N  T  N  I  I  H  Y  F  N  S  P  T  L  F  T  D </first_frame>
            <second_frame>  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  :  A  N  I  C  R  K  C  S  F  H  C  S  L  H  R  F  Q  P  M  Y  V  E  H  *  S  Y  I  F  S  C  C  F  R  N  S  *  F  E  I  *  C  C  V  N  R  S  S  *  S  F  N  L  G  *  R :   *  V  S  C  *  V  D  I  C  K  A  F  R  A  N  F  G  A  P  R  S  W  K  C  T  Y  C  S  N  W  W  T  R  C  K  E  C  *  E  L  Q  N  D  R  *  A  C  R  E  N  R  C  R  R  F  S  L  S  R  D  F  C  C  I  H  L  V  L  F  S  A  T  S  L  S  F  I  N  L  S  L  T  Y  F  K  F  L  A  I  T  C  I  I  L  I  S  I  C  F  D  L  I  I  K  L  D  Y  L  C  S  A  V  G  A  T  R  A  A  V  D  A  G  F  V  P  N  D  L  Q  :  V  G  Q  T  G  K  I  V  A  P  E  L  Y  M  A  F  G  V  S  G  A  I  Q  H  I  A  G  M  R  D  S  K  I  I  V  A  V  N  K  D  A  D  A  P  I  F  Q  :  V  A  D  Y  G  L  V  G  D  L  F  D  V  I  P  E  L  L  E  K  L  P  E  K  K  *  K  I  H  R  S  L  *  S  N  K  D  E  D  D  V  C  G  G  *  H  L  L  S  R  N  N  I  I  L  I  S  F  I  I  S  I  L  Q  P  Y  S  Q   </second_frame>
            <third_frame>   G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R :   P  I  Y  A  G  N  A  L  S  T  V  R  Y  T  G  S  S  P  C  M  L  S  I  R  A  T  S  F  P  V  A  S  E  T  A  D  L  K  S  N  A  A  S  I  D  Q  V  D  L  S  T  L  D  E   : D  E  S  V  A  K  S  T  Y  V  K  L  S  A  Q  I  S  E  R  P  D  L  G  N  A  R  I  V  V  T  G  G  R  G  V  K  S  A  E  N  F  K  M  I  D  K  L  A  E  K  I  G  A  A  G  F  P  S  P  V  T  S  A  V  F  T  L  C  F  F  L  L  L  L  Y  P  L  S  I  S  P  *  H  I  S  N  S  *  Q  *  L  A  *  F  *  F  Q  S  A  L  I  *  S  L  N  W  I  T  S  V  L  Q  L  V  P  L  V  L  Q  W  M  L  D  L  F  P  T  I  S  R :   L  A  K  L  G  K  L  L  P  Q  N  C  I  W  H  L  V  F  L  V  Q  F  N  T  *  Q  A  *  E  I  P  R  S  L  L  L  *  I  K  M  Q  M  P  P  Y  S  R :   L  L  I  M  D  S  W  V  I  S  S  M  S  F  R  S  C  *  R  N  F  L  R  K  S  R  K  Y  T  G  L  C  D  P  I  K  M  K  M  M  Y  V  V  D  D  I  C  Y  P  G  I  I  *  Y  *  Y  H  S  L  F  Q  F  S  N  L  I  H  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123195" stop="123446"/>
                    <exon start="123766" stop="123906"/>
                    <exon start="124432" stop="124509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACRENRCRRFSLSRDFCCIHLVLFSATSLSFINLSLTYFKFLAITCIILISICFDLIIKLDYLCSAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQHIAGMRDSKIIVAVNKDADAPIFQVADYGLVGDLFDVIPELLEKLPEKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121095" stop="121141"/>
                    <exon start="122745" stop="122908"/>
                    <exon start="123059" stop="123303"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLRNMLLHPTLPFLRPIYAGNALSTVRYTGSSPCMLSIRATSFPVASETADLKSNAASIDQVDLSTLDEDESVAKSTYVKLSAQISERPDLGNARIVVTGGRGVKSAENFKMIDKLAEKIGAAGFPSPVTSAVFTLCFFLLLLYPLSISP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="119844" e_stop="119949"/>
            <exon e_start="120959" e_stop="121568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119844" e_stop="119949" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="119950" i_stop="120958" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120959" e_stop="121568" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119844" stop="119949"/>
              <exon start="120959" stop="121568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119847" stop="119949"/>
              <exon start="120959" stop="121213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATACCACAAGTTGAAGCGAGCGAACTGGATATGGCCATTGGAACGATGCTCTCCTTATTCAGAAAACTCTCTAATACTTCACGGATAACCCCTTTTCGATCT : CTTAGTACATTGGTTTTAGCTGAACATGAAGGAGGATTAATCAAAAACTCATCATTAAGTGCTGTGGAGGCTGCAAAATCCTTAGGTGGGGACAATTCGATATCGTTGCTACTTGCCGGATCTGGTCATTCCCTGAAGGAAGCTGCGGAACATGCTGCTTCATCCCACCCTTCCGTTTCTCAGGTAACTCCTCTTTGGATGCTGGACTGTTTTGTTTCACCATGTTTCCCACGGAATACTAACCTTATGCTCCTACTGGTTTTGCAATTTAGTTTGCTCGCTTTTCAGTAACATCTTGGCTAGGACATCCCTAGTTCAGTGTGAAAAAGAGTAGTTGTATTCTATTGACATACTTAAGTGATTGTGTAAAACACATTTACAATGTTCACTTCGTTACAGAGAGAGAATGATCTTCCGAGGAGGAGAAAAGAGAGGATGATATTGCTTTTTCTCTGTCTTCTTGTACTAAAATTCTTGGAAATGCCATTTTCAACTGAGTGCTGAACTTTGGCAAGCAAGCCATAGAACAAAATCCAGGAACGATGATAGGTGATCTTGTCAAGAGTATCCAAAGTATACCTGTTAACTCTTACTCACAATATTATCACTT</gDNA_template>
            <first_frame> Q  N  T  T  S  *  S  E  R  T  G  Y  G  H  W  N  D  A  L  L  I  Q  K  T  L  *  Y  F  T  D  N  P  F  S  I   : S  *  Y  I  G  F  S  *  T  *  R  R  I  N  Q  K  L  I  I  K  C  C  G  G  C  K  I  L  R  W  G  Q  F  D  I  V  A  T  C  R  I  W  S  F  P  E  G  S  C  G  T  C  C  F  I  P  P  F  R  F  S  G  N  S  S  L  D  A  G  L  F  C  F  T  M  F  P  T  E  Y  *  P  Y  A  P  T  G  F  A  I  *  F  A  R  F  S  V  T  S  W  L  G  H  P  *  F  S  V  K  K  S  S  C  I  L  L  T  Y  L  S  D  C  V  K  H  I  Y  N  V  H  F  V  T  E  R  E  *  S  S  E  E  E  K  R  E  D  D  I  A  F  S  L  S  S  C  T  K  I  L  G  N  A  I  F  N  *  V  L  N  F  G  K  Q  A  I  E  Q  N  P  G  T  M  I  G  D  L  V  K  S  I  Q  S  I  P  V  N  S  Y  S  Q  Y  Y  H   </first_frame>
            <second_frame>  K  I  P  Q  V  E  A  S  E  L  D  M  A  I  G  T  M  L  S  L  F  R  K  L  S  N  T  S  R  I  T  P  F  R  S  :  L  S  T  L  V  L  A  E  H  E  G  G  L  I  K  N  S  S  L  S  A  V  E  A  A  K  S  L  G  G  D  N  S  I  S  L  L  L  A  G  S  G  H  S  L  K  E  A  A  E  H  A  A  S  S  H  P  S  V  S  Q  V  T  P  L  W  M  L  D  C  F  V  S  P  C  F  P  R  N  T  N  L  M  L  L  L  V  L  Q  F  S  L  L  A  F  Q  *  H  L  G  *  D  I  P  S  S  V  *  K  R  V  V  V  F  Y  *  H  T  *  V  I  V  *  N  T  F  T  M  F  T  S  L  Q  R  E  N  D  L  P  R  R  R  K  E  R  M  I  L  L  F  L  C  L  L  V  L  K  F  L  E  M  P  F  S  T  E  C  *  T  L  A  S  K  P  *  N  K  I  Q  E  R  *  *  V  I  L  S  R  V  S  K  V  Y  L  L  T  L  T  H  N  I  I  T  </second_frame>
            <third_frame>   K  Y  H  K  L  K  R  A  N  W  I  W  P  L  E  R  C  S  P  Y  S  E  N  S  L  I  L  H  G  *  P  L  F  D  L :   L  V  H  W  F  *  L  N  M  K  E  D  *  S  K  T  H  H  *  V  L  W  R  L  Q  N  P  *  V  G  T  I  R  Y  R  C  Y  L  P  D  L  V  I  P  *  R  K  L  R  N  M  L  L  H  P  T  L  P  F  L  R  *  L  L  F  G  C  W  T  V  L  F  H  H  V  S  H  G  I  L  T  L  C  S  Y  W  F  C  N  L  V  C  S  L  F  S  N  I  L  A  R  T  S  L  V  Q  C  E  K  E  *  L  Y  S  I  D  I  L  K  *  L  C  K  T  H  L  Q  C  S  L  R  Y  R  E  R  M  I  F  R  G  G  E  K  R  G  *  Y  C  F  F  S  V  F  L  Y  *  N  S  W  K  C  H  F  Q  L  S  A  E  L  W  Q  A  S  H  R  T  K  S  R  N  D  D  R  *  S  C  Q  E  Y  P  K  Y  T  C  *  L  L  L  T  I  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119845" stop="119949"/>
                    <exon start="120959" stop="121249"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIPQVEASELDMAIGTMLSLFRKLSNTSRITPFRSLSTLVLAEHEGGLIKNSSLSAVEAAKSLGGDNSISLLLAGSGHSLKEAAEHAASSHPSVSQVTPLWMLDCFVSPCFPRNTNLMLLLVLQFSLLAFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="125294" PGL_stop="124781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125294" e_stop="124885"/>
            <exon e_start="124811" e_stop="124781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.782" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.581"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="125294" e_stop="124885" e_length="410"/>
          </exon>
          <intron i_serial="1" don_prob="0.782" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124884" i_stop="124812" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="0.581">
            <gDNA_exon_boundary e_start="124811" e_stop="124781" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125294" stop="124885"/>
              <exon start="124811" stop="124781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGTTGTGATTCATGCTGTGGAAGCTGGCTTTGGGCCACAAATGACAGCTAAAAAGATAGCAGCATTGGCACAGCAAAGAGCAATGGACACAACTAAGCCGTCACCTTTCTCTGATGCAGCCAAAGAGGCCGGATTTGAGTACCAAGGGGGGAAACTTGATGACATAACTGTAGTTGTTTCTTATGTAACTAACAATGCCAATCCATTGGCAAATTGAGCCACAAACTTTAATGTTTTTGAAGTAGGACTGTGACTAGCAATTCGCCTAGTGATGCCTCCTTGATCCGTCAAGTGTTTTAGTTAATAGATTTACAGTACGGAGGCATGTCTATATGTTGTATACGATGACCTAATTGATACATTGTTCTTGTTGACATTGATGGATACAAAGACACTGTTCTTTGAAA : ATAAAAAAAAAAAATAGTAGAAAAAGAATTT</gDNA_template>
            <first_frame> G  S  C  D  S  C  C  G  S  W  L  W  A  T  N  D  S  *  K  D  S  S  I  G  T  A  K  S  N  G  H  N  *  A  V  T  F  L  *  C  S  Q  R  G  R  I  *  V  P  R  G  E  T  *  *  H  N  C  S  C  F  L  C  N  *  Q  C  Q  S  I  G  K  L  S  H  K  L  *  C  F  *  S  R  T  V  T  S  N  S  P  S  D  A  S  L  I  R  Q  V  F  *  L  I  D  L  Q  Y  G  G  M  S  I  C  C  I  R  *  P  N  *  Y  I  V  L  V  D  I  D  G  Y  K  D  T  V  L  *  K :   *  K  K  K  I  V  E  K  E  F </first_frame>
            <second_frame>  E  V  V  I  H  A  V  E  A  G  F  G  P  Q  M  T  A  K  K  I  A  A  L  A  Q  Q  R  A  M  D  T  T  K  P  S  P  F  S  D  A  A  K  E  A  G  F  E  Y  Q  G  G  K  L  D  D  I  T  V  V  V  S  Y  V  T  N  N  A  N  P  L  A  N  *  A  T  N  F  N  V  F  E  V  G  L  *  L  A  I  R  L  V  M  P  P  *  S  V  K  C  F  S  *  *  I  Y  S  T  E  A  C  L  Y  V  V  Y  D  D  L  I  D  T  L  F  L  L  T  L  M  D  T  K  T  L  F  F  E   : N  K  K  K  K  *  *  K  K  N   </second_frame>
            <third_frame>   K  L  *  F  M  L  W  K  L  A  L  G  H  K  *  Q  L  K  R  *  Q  H  W  H  S  K  E  Q  W  T  Q  L  S  R  H  L  S  L  M  Q  P  K  R  P  D  L  S  T  K  G  G  N  L  M  T  *  L  *  L  F  L  M  *  L  T  M  P  I  H  W  Q  I  E  P  Q  T  L  M  F  L  K  *  D  C  D  *  Q  F  A  *  *  C  L  L  D  P  S  S  V  L  V  N  R  F  T  V  R  R  H  V  Y  M  L  Y  T  M  T  *  L  I  H  C  S  C  *  H  *  W  I  Q  R  H  C  S  L  K  :  I  K  K  K  N  S  R  K  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125293" stop="125075"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVIHAVEAGFGPQMTAKKIAALAQQRAMDTTKPSPFSDAAKEAGFEYQGGKLDDITVVVSYVTNNANPLAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="127362" PGL_stop="125575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127362" e_stop="127286"/>
            <exon e_start="126273" e_stop="125575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127362" e_stop="127286" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="127285" i_stop="126274" i_length="1012"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="126273" e_stop="125575" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127362" stop="127286"/>
              <exon start="126273" stop="125575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127361" stop="127286"/>
              <exon start="126273" stop="125798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGTTCCTCTGTGTTCTTGCACCCAAAAGTAAACAAAACGGAAAAGTTGTCCGCCGTCAACGAAAATATTTTCAG : GCTTTACCTCCTGAACTACTTGCAGCAAGCAGAGTTTCTCTCGTTATTGATTGTTACAGCGGATAATGGCTGTTTGTGGTTCAAGAACTTCTCATATTGGCCATTTTGTTGGTAAGATGGCTGCTAGGCGCCTGCATTATGCATTGGCGGTAAATAATAGTAGCGTCTCTTATAGCAATAGGAGCATTGAGAATGTTAGAAAAGCCAACATTAGTTTGAGAAATAAAGGCCAACCTCACAACTTCATGTTATCTCAATATTTTAAAACTAGTGTTGCAAAGAGGAAGGGACATGAAGGATTTGGATTAGAAGGTTTTCGCGTTTTATCACTTGCACGTTTCTCTTCTGGAACTACTGCTCCCAGCAGCCTGTCTTCTGATAATACTAAGGAAAAGGAACAGACTGCAGATACTGTTGATTCTTCTGAGGGAAAGATACACCTGAAGCTGAATTCGGGATCATTTTATCTGCCTCATCCTGCGAAAGCAAAAACTGGTGGAGAGGATGCTCATTTCATTTATGATCCTGCACAAGCTATAGGTGTAGCTGATGGGGTCGGTGGATGGGCTGATCTTGGTATTGATGCAGGGGAATATGCCCGTGAATTAATGTCTAACTGTATGTCTGTGATACAAGAGGAACCTAAGGATTCCGTAGACCTTATTAGGGTCCTGGAGAAAGCTTACATGAGAACAAAAG</gDNA_template>
            <first_frame> G  S  S  S  V  F  L  H  P  K  V  N  K  T  E  K  L  S  A  V  N  E  N  I  F  R :   L  Y  L  L  N  Y  L  Q  Q  A  E  F  L  S  L  L  I  V  T  A  D  N  G  C  L  W  F  K  N  F  S  Y  W  P  F  C  W  *  D  G  C  *  A  P  A  L  C  I  G  G  K  *  *  *  R  L  L  *  Q  *  E  H  *  E  C  *  K  S  Q  H  *  F  E  K  *  R  P  T  S  Q  L  H  V  I  S  I  F  *  N  *  C  C  K  E  E  G  T  *  R  I  W  I  R  R  F  S  R  F  I  T  C  T  F  L  F  W  N  Y  C  S  Q  Q  P  V  F  *  *  Y  *  G  K  G  T  D  C  R  Y  C  *  F  F  *  G  K  D  T  P  E  A  E  F  G  I  I  L  S  A  S  S  C  E  S  K  N  W  W  R  G  C  S  F  H  L  *  S  C  T  S  Y  R  C  S  *  W  G  R  W  M  G  *  S  W  Y  *  C  R  G  I  C  P  *  I  N  V  *  L  Y  V  C  D  T  R  G  T  *  G  F  R  R  P  Y  *  G  P  G  E  S  L  H  E  N  K   </first_frame>
            <second_frame>  E  V  P  L  C  S  C  T  Q  K  *  T  K  R  K  S  C  P  P  S  T  K  I  F  S   : G  F  T  S  *  T  T  C  S  K  Q  S  F  S  R  Y  *  L  L  Q  R  I  M  A  V  C  G  S  R  T  S  H  I  G  H  F  V  G  K  M  A  A  R  R  L  H  Y  A  L  A  V  N  N  S  S  V  S  Y  S  N  R  S  I  E  N  V  R  K  A  N  I  S  L  R  N  K  G  Q  P  H  N  F  M  L  S  Q  Y  F  K  T  S  V  A  K  R  K  G  H  E  G  F  G  L  E  G  F  R  V  L  S  L  A  R  F  S  S  G  T  T  A  P  S  S  L  S  S  D  N  T  K  E  K  E  Q  T  A  D  T  V  D  S  S  E  G  K  I  H  L  K  L  N  S  G  S  F  Y  L  P  H  P  A  K  A  K  T  G  G  E  D  A  H  F  I  Y  D  P  A  Q  A  I  G  V  A  D  G  V  G  G  W  A  D  L  G  I  D  A  G  E  Y  A  R  E  L  M  S  N  C  M  S  V  I  Q  E  E  P  K  D  S  V  D  L  I  R  V  L  E  K  A  Y  M  R  T  K  </second_frame>
            <third_frame>   K  F  L  C  V  L  A  P  K  S  K  Q  N  G  K  V  V  R  R  Q  R  K  Y  F  Q  :  A  L  P  P  E  L  L  A  A  S  R  V  S  L  V  I  D  C  Y  S  G  *  W  L  F  V  V  Q  E  L  L  I  L  A  I  L  L  V  R  W  L  L  G  A  C  I  M  H  W  R  *  I  I  V  A  S  L  I  A  I  G  A  L  R  M  L  E  K  P  T  L  V  *  E  I  K  A  N  L  T  T  S  C  Y  L  N  I  L  K  L  V  L  Q  R  G  R  D  M  K  D  L  D  *  K  V  F  A  F  Y  H  L  H  V  S  L  L  E  L  L  L  P  A  A  C  L  L  I  I  L  R  K  R  N  R  L  Q  I  L  L  I  L  L  R  E  R  Y  T  *  S  *  I  R  D  H  F  I  C  L  I  L  R  K  Q  K  L  V  E  R  M  L  I  S  F  M  I  L  H  K  L  *  V  *  L  M  G  S  V  D  G  L  I  L  V  L  M  Q  G  N  M  P  V  N  *  C  L  T  V  C  L  *  Y  K  R  N  L  R  I  P  *  T  L  L  G  S  W  R  K  L  T  *  E  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126223" stop="125576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQRIMAVCGSRTSHIGHFVGKMAARRLHYALAVNNSSVSYSNRSIENVRKANISLRNKGQPHNFMLSQYFKTSVAKRKGHEGFGLEGFRVLSLARFSSGTTAPSSLSSDNTKEKEQTADTVDSSEGKIHLKLNSGSFYLPHPAKAKTGGEDAHFIYDPAQAIGVADGVGGWADLGIDAGEYARELMSNCMSVIQEEPKDSVDLIRVLEKAYMRTK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="+" PGL_start="127850" PGL_stop="131704"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127850" e_stop="127971"/>
            <exon e_start="129363" e_stop="129486"/>
            <exon e_start="129701" e_stop="129934"/>
            <exon e_start="130081" e_stop="130371"/>
            <exon e_start="131299" e_stop="131704"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127850" e_stop="127971" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.945">
            <gDNA_intron_boundary i_start="127972" i_stop="129362" i_length="1391"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="129363" e_stop="129486" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="129487" i_stop="129700" i_length="214"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129701" e_stop="129934" e_length="234"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="129935" i_stop="130080" i_length="146"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="130081" e_stop="130371" e_length="291"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="130372" i_stop="131298" i_length="927"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="131299" e_stop="131704" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127850" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127877" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130371"/>
              <exon start="131299" stop="131402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127882" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130371"/>
              <exon start="131299" stop="131401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127886" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127890" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127902" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127912" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127914" stop="127971"/>
              <exon start="129363" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130371"/>
              <exon start="131299" stop="131450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129383" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129463" stop="129486"/>
              <exon start="129701" stop="129934"/>
              <exon start="130081" stop="130371"/>
              <exon start="131299" stop="131461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129755" stop="129934"/>
              <exon start="130081" stop="130371"/>
              <exon start="131299" stop="131319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130119" stop="130371"/>
              <exon start="131299" stop="131704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131361" stop="131681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTGTTTTAATAATTGGCTTACAGCTGATGTGAAGTAAGAACACAATGGTTTGCTACAATTTGGTGGCCCAACAATCACCTCCAATTTTGGTTCAATCACAATATCCGTCAAAACCCAG : GGGGTTGTCTGTGAAAGTGGTGTCTTCCTGCTGCACTGAATGTCCAATATTTGGTAAGGTTGAGGTTAAACATGTCATTTCTGGTCTTGCGGCATCAATCCTATTTCTCTCTCAAAGTAGCATG : GCTTTTGCAGCAGACCTCCCTCATTACAACAGTGTATTTCAACTTGCAAATGTCGCGGACAGCATGCCAACACTTCCTTTGGAGAAGGGAAATGATGGTGGAAAGCTGATGATGATGCGAGGCATGACAGCGAAAGACTTTGATCCAATCAGGTATTCTGGAAGATGGTTCGAAGTAGCTTCCCTTAAACGTGGATTTGCTGGACAAGGTCAAGAAGATTGTCATTGCACACAG : GGCATTTACACTGTTGATATGAATGCACCTGCTATCCAAGTAGACACATTTTGCGTTCATGGAGGACCTGATGGCTACATCACAGGCATAAGGGGAAGGGTTCAATGCCTTAATGAGGAGGATAAGGAGAAAGACGAGACTGATCTAGAAAGGCAAGAAATGATTAGGGAGAAGTGTTACCTTAGGTTTCCTACACTGCCGTTCATCCCTAAGGAGCCTTATGATGTAATTGCAACTGATTATGATAACTTCGCACTGGTTTCTGGAGCTAAAGATAAAAGCTTCGTTCAG : ATATACTCGAGGACGCCTAATCCAGGACCAGAATTTATCGACAGGTACAAGAACTACTTAGCAAGTTTCGGATATGATCCAAGCAAAATCAATGACACTCCACAAGACTGTGAGGTAAAGACTACCAGTCAGCTATCAGCAATGATGTCCATGTCCGGAATGCAACAAGCTCTAAACAACCAATTTCCTGATTTAGAGTTGAGACGCCCTGTTCAATTCAACCCATTCACAAGCGTTTTCGAAACTCTCAAGAAACTTGCTGAACTATATTTCAAGTAGTAAATCCACTTGATATATTACTTGTATAGTGCATAGTTCTTATGACTAGTGGCTGTAACACATTGAACTAAAGTTCAACTATGAATGACATACACTCCAGAAAAATTTGTGTGTTACTATTGGGAAA</gDNA_template>
            <first_frame> K  S  V  L  I  I  G  L  Q  L  M  *  S  K  N  T  M  V  C  Y  N  L  V  A  Q  Q  S  P  P  I  L  V  Q  S  Q  Y  P  S  K  P  R :   G  L  S  V  K  V  V  S  S  C  C  T  E  C  P  I  F  G  K  V  E  V  K  H  V  I  S  G  L  A  A  S  I  L  F  L  S  Q  S  S  M  :  A  F  A  A  D  L  P  H  Y  N  S  V  F  Q  L  A  N  V  A  D  S  M  P  T  L  P  L  E  K  G  N  D  G  G  K  L  M  M  M  R  G  M  T  A  K  D  F  D  P  I  R  Y  S  G  R  W  F  E  V  A  S  L  K  R  G  F  A  G  Q  G  Q  E  D  C  H  C  T  Q  :  G  I  Y  T  V  D  M  N  A  P  A  I  Q  V  D  T  F  C  V  H  G  G  P  D  G  Y  I  T  G  I  R  G  R  V  Q  C  L  N  E  E  D  K  E  K  D  E  T  D  L  E  R  Q  E  M  I  R  E  K  C  Y  L  R  F  P  T  L  P  F  I  P  K  E  P  Y  D  V  I  A  T  D  Y  D  N  F  A  L  V  S  G  A  K  D  K  S  F  V  Q  :  I  Y  S  R  T  P  N  P  G  P  E  F  I  D  R  Y  K  N  Y  L  A  S  F  G  Y  D  P  S  K  I  N  D  T  P  Q  D  C  E  V  K  T  T  S  Q  L  S  A  M  M  S  M  S  G  M  Q  Q  A  L  N  N  Q  F  P  D  L  E  L  R  R  P  V  Q  F  N  P  F  T  S  V  F  E  T  L  K  K  L  A  E  L  Y  F  K  *  *  I  H  L  I  Y  Y  L  Y  S  A  *  F  L  *  L  V  A  V  T  H  *  T  K  V  Q  L  *  M  T  Y  T  P  E  K  F  V  C  Y  Y  W  E  </first_frame>
            <second_frame>  K  V  F  *  *  L  A  Y  S  *  C  E  V  R  T  Q  W  F  A  T  I  W  W  P  N  N  H  L  Q  F  W  F  N  H  N  I  R  Q  N  P   : G  G  C  L  *  K  W  C  L  P  A  A  L  N  V  Q  Y  L  V  R  L  R  L  N  M  S  F  L  V  L  R  H  Q  S  Y  F  S  L  K  V  A  W :   L  L  Q  Q  T  S  L  I  T  T  V  Y  F  N  L  Q  M  S  R  T  A  C  Q  H  F  L  W  R  R  E  M  M  V  E  S  *  *  *  C  E  A  *  Q  R  K  T  L  I  Q  S  G  I  L  E  D  G  S  K  *  L  P  L  N  V  D  L  L  D  K  V  K  K  I  V  I  A  H  R :   A  F  T  L  L  I  *  M  H  L  L  S  K  *  T  H  F  A  F  M  E  D  L  M  A  T  S  Q  A  *  G  E  G  F  N  A  L  M  R  R  I  R  R  K  T  R  L  I  *  K  G  K  K  *  L  G  R  S  V  T  L  G  F  L  H  C  R  S  S  L  R  S  L  M  M  *  L  Q  L  I  M  I  T  S  H  W  F  L  E  L  K  I  K  A  S  F  R :   Y  T  R  G  R  L  I  Q  D  Q  N  L  S  T  G  T  R  T  T  *  Q  V  S  D  M  I  Q  A  K  S  M  T  L  H  K  T  V  R  *  R  L  P  V  S  Y  Q  Q  *  C  P  C  P  E  C  N  K  L  *  T  T  N  F  L  I  *  S  *  D  A  L  F  N  S  T  H  S  Q  A  F  S  K  L  S  R  N  L  L  N  Y  I  S  S  S  K  S  T  *  Y  I  T  C  I  V  H  S  S  Y  D  *  W  L  *  H  I  E  L  K  F  N  Y  E  *  H  T  L  Q  K  N  L  C  V  T  I  G  K </second_frame>
            <third_frame>   K  C  F  N  N  W  L  T  A  D  V  K  *  E  H  N  G  L  L  Q  F  G  G  P  T  I  T  S  N  F  G  S  I  T  I  S  V  K  T  Q  :  G  V  V  C  E  S  G  V  F  L  L  H  *  M  S  N  I  W  *  G  *  G  *  T  C  H  F  W  S  C  G  I  N  P  I  S  L  S  K  *  H   : G  F  C  S  R  P  P  S  L  Q  Q  C  I  S  T  C  K  C  R  G  Q  H  A  N  T  S  F  G  E  G  K  *  W  W  K  A  D  D  D  A  R  H  D  S  E  R  L  *  S  N  Q  V  F  W  K  M  V  R  S  S  F  P  *  T  W  I  C  W  T  R  S  R  R  L  S  L  H  T   : G  H  L  H  C  *  Y  E  C  T  C  Y  P  S  R  H  I  L  R  S  W  R  T  *  W  L  H  H  R  H  K  G  K  G  S  M  P  *  *  G  G  *  G  E  R  R  D  *  S  R  K  A  R  N  D  *  G  E  V  L  P  *  V  S  Y  T  A  V  H  P  *  G  A  L  *  C  N  C  N  *  L  *  *  L  R  T  G  F  W  S  *  R  *  K  L  R  S   : D  I  L  E  D  A  *  S  R  T  R  I  Y  R  Q  V  Q  E  L  L  S  K  F  R  I  *  S  K  Q  N  Q  *  H  S  T  R  L  *  G  K  D  Y  Q  S  A  I  S  N  D  V  H  V  R  N  A  T  S  S  K  Q  P  I  S  *  F  R  V  E  T  P  C  S  I  Q  P  I  H  K  R  F  R  N  S  Q  E  T  C  *  T  I  F  Q  V  V  N  P  L  D  I  L  L  V  *  C  I  V  L  M  T  S  G  C  N  T  L  N  *  S  S  T  M  N  D  I  H  S  R  K  I  C  V  L  L  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0221M09.1" strand="+"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127886" stop="127971"/>
                    <exon start="129363" stop="129486"/>
                    <exon start="129701" stop="129934"/>
                    <exon start="130081" stop="130371"/>
                    <exon start="131299" stop="131577"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKNTMVCYNLVAQQSPPILVQSQYPSKPRGLSVKVVSSCCTECPIFGKVEVKHVISGLAASILFLSQSSMAFAADLPHYNSVFQLANVADSMPTLPLEKGNDGGKLMMMRGMTAKDFDPIRYSGRWFEVASLKRGFAGQGQEDCHCTQGIYTVDMNAPAIQVDTFCVHGGPDGYITGIRGRVQCLNEEDKEKDETDLERQEMIREKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKDKSFVQIYSRTPNPGPEFIDRYKNYLASFGYDPSKINDTPQDCEVKTTSQLSAMMSMSGMQQALNNQFPDLELRRPVQFNPFTSVFETLKKLAELYFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="131756" PGL_stop="131292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131756" e_stop="131292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="131756" e_stop="131292" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131756" stop="131292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265203" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTTTAAACTCATACCAAATATAAGCATGTCATTCACATATGTCTACCATTTTCCCAATAGTAACACACAAATTTTTCTGGAGTGTATGTCATTCATAGTTGAACTTTAGTTCAATGTGTTACAGCCACTAGTCATAAGAACTATGCACTATACAAGTAATATATCAAGTGGATTTACTACTTGAAATATAGTTCAGCAAGTTTCTTGAGAGTTTCGAAAACGCTTGTGAATGGGTTGAATTGAACAGGGCGTCTCAACTCTAAATCAGGAAATTGGTTGTTTAGAGCTTGTTGCATTCCGGACATGGACATCATTGCTGATAGCTGACTGGTAGTCTTTACCTCACAGTCTTGTGGAGTGTCATTGATTTTGCTTGGATCATATCCGAAACTTGCTAAGTAGTTCTTGTACCTGTCGATAAATTCTGGTCCTGGATTAGGCGTCCTCGAGTATATCTGATTT</gDNA_template>
            <first_frame> I  F  *  T  H  T  K  Y  K  H  V  I  H  I  C  L  P  F  S  Q  *  *  H  T  N  F  S  G  V  Y  V  I  H  S  *  T  L  V  Q  C  V  T  A  T  S  H  K  N  Y  A  L  Y  K  *  Y  I  K  W  I  Y  Y  L  K  Y  S  S  A  S  F  L  R  V  S  K  T  L  V  N  G  L  N  *  T  G  R  L  N  S  K  S  G  N  W  L  F  R  A  C  C  I  P  D  M  D  I  I  A  D  S  *  L  V  V  F  T  S  Q  S  C  G  V  S  L  I  L  L  G  S  Y  P  K  L  A  K  *  F  L  Y  L  S  I  N  S  G  P  G  L  G  V  L  E  Y  I  *  F </first_frame>
            <second_frame>  Y  F  K  L  I  P  N  I  S  M  S  F  T  Y  V  Y  H  F  P  N  S  N  T  Q  I  F  L  E  C  M  S  F  I  V  E  L  *  F  N  V  L  Q  P  L  V  I  R  T  M  H  Y  T  S  N  I  S  S  G  F  T  T  *  N  I  V  Q  Q  V  S  *  E  F  R  K  R  L  *  M  G  *  I  E  Q  G  V  S  T  L  N  Q  E  I  G  C  L  E  L  V  A  F  R  T  W  T  S  L  L  I  A  D  W  *  S  L  P  H  S  L  V  E  C  H  *  F  C  L  D  H  I  R  N  L  L  S  S  S  C  T  C  R  *  I  L  V  L  D  *  A  S  S  S  I  S  D   </second_frame>
            <third_frame>   I  L  N  S  Y  Q  I  *  A  C  H  S  H  M  S  T  I  F  P  I  V  T  H  K  F  F  W  S  V  C  H  S  *  L  N  F  S  S  M  C  Y  S  H  *  S  *  E  L  C  T  I  Q  V  I  Y  Q  V  D  L  L  L  E  I  *  F  S  K  F  L  E  S  F  E  N  A  C  E  W  V  E  L  N  R  A  S  Q  L  *  I  R  K  L  V  V  *  S  L  L  H  S  G  H  G  H  H  C  *  *  L  T  G  S  L  Y  L  T  V  L  W  S  V  I  D  F  A  W  I  I  S  E  T  C  *  V  V  L  V  P  V  D  K  F  W  S  W  I  R  R  P  R  V  Y  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0221M09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 466 chains have been computed
$ 
$ memory statistics:
$ 1443776 bytes spliced alignments in total
$ 346 spliced alignments have been stored
$ 4172 bytes was the average size of a spliced alignment
$ 45424 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1682 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 491 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:49:44
-->
