<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 22:19:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719771" ref_strand="+" ref_description="SGN-E719771 [FC08DD01]">
      <seq>ggcttattttctacgcccataaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccccccaaaggggccccttttaatttttttaggggcccccaaaaaaggggggggaaaaagggggaaaaattttttccgggggaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1346" stop="105020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1645" g_stop="1803" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="290" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="520" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4764" i_stop="5718" i_length="955">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5719" g_stop="5727" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="529" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5728" i_stop="7921" i_length="2194">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7922" g_stop="7953" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="561" r_length="32" r_score="0.781"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7954" i_stop="8774" i_length="821">
            <donor d_prob="0.534" d_score="0.00"/>
            <acceptor a_prob="0.075" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8775" g_stop="8805" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="591" r_length="30" r_score="0.548"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8806" i_stop="9884" i_length="1079">
            <donor d_prob="0.506" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9885" g_stop="9932" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="636" r_length="45" r_score="0.583"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9933" i_stop="11217" i_length="1285">
            <donor d_prob="0.341" d_score="0.58"/>
            <acceptor a_prob="0.536" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11218" g_stop="11247" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="664" r_length="28" r_score="0.567"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E719771" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1645" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
          <exon e_start="5719" e_stop="5727"/>
          <exon e_start="7922" e_stop="7953"/>
          <exon e_start="8775" e_stop="8805"/>
          <exon e_start="9885" e_stop="9932"/>
          <exon e_start="11218" e_stop="11247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAAGATCAAGATATGTCTCTGCCCCCCTTGGGGCATCCTCATCCCACAGGGGCGGAGCTAGAAGGTTATCGTAAGGGTACAACCGAATCCAGATCTACTATATGTATACAAAAACTTAGCTCCGAGCCACATTACATACACGTGATGTTGCTATTTTAGAATTTAGAATTTCATAAAGTTAAAATCTTTGGCTCCAACTCCGTCACCCTTATCATAGATGGTGATGTTAACTTTGCTTCGAGGATGGCAAAATATTCCACTTTGAGTACCCTTATAAGTCATGGGAAATGCTGATAATTAATATGGAATCCTAAAGGTATTGTGCTTGTATTCTCTCCCAGTTCTGCTCCCACCACTGTTTTGCGTTCACCTCTCCAAATTTTTCACGACTGAGTTAATGAAGAAGAAGTTAGAGAAATGCCAGTTGAAATTGCACTATCAACACATGAACTGACTTCCCTCGTATCAGACACTAGGAATGTCTACACTAGGTTACCTATGCTTCATCGTATATGGCACGTTAGAACGAAATAAAACAGAAGTTGTGAATTACCTGAATCTAACTCGACGTAGCTCTCTAGTTCCATCAGCTAATTGTCTGATAGTTATACACACTCCAGGTTCATCTTGTTCTATCCATTCTGACTCCATATCACTAGCATTACTTACAGAAACTGAAGCTTCGTCTCTAGAGGAGGTTGTCGTTCTTGATACCCCACTGCCCTTTGGGAAACTAGGGACATGAGCACCTAATCCAGCATTGTATTGTTGGAAATCCCTTGCAGATCCCGGCCTTGACGAATAATTTGAATCTCTCTGCAGAAAAAAGACCTTAAATTTCATTTACTTTCTTAAACTCTGTGTCAAATCAAAACCAGACAAAGAAAGTCTTACCCCATCCTCAGACTGTGAGGGTGTGTGAAGAGCATACTTATTAAATCTCTGAACATTGTAAAGCTCCATAATTCTGTCATAATTTTCACCCCACCATCTTTGAGCTTGCCATTTGTTGAACACGTCCCGACTTCAAAATAACAAATCAAATCTACTTTCTTAAACGACGTATCAAGTCAAAACTAGACAAAATAAAATTGAAACGCGGGGAGTAAAATGAAAGGAGATGATGAATAGATACCTAAATCTGATTCTTTTAAGATCATTTCCACCATGAGGAAGAGAATCAAAAGTAATCTGAATTCCAGGCTCCACTTGTGCTGTCCACTCTTTAGCCTCCTCTTCATCTTCCAACATCACATCACTTAATCTAGGATCAGTTCTAGTTGGTGTTTGGAAATGACCAGTACTTGTAAAATCCCAAGCTGGAGTAGAATTTGAACTTCCTGTTTGGTAATTATATAAAACTCCCTTAGAGATTGCATCAAAATCTGGATATGGATATGGTCCATGCCCTTTCTTGTAATTGTTGGTGGGTATACTACTTGACTTGCACCTATAAGCACCAGTGACCTTCAATGCTATATCTTTAATCTGCAATTGATTTAAAAAAAATTGAAAATATTGTAATAATATAAAAGAGTACTGAATCGTAGGTCTCTAACAGATATTCATCCATTATAAGTTCTCTTTATCTGTCTCAAGTCTTGCCGAGTAGAGTTATCCAATAGAATATAGTCAATGTCCACGCTTAGTTGATCCATGATTTATTGTTTAATCGTTCGTTGATCCGTTCATATTCCAATCAAGATGTATAGATCTTATTTATGGAGTAACGTAAAATATACAGAAACTCTATTTGCCTCTCGTTCTGAATCTAGTGATCAACCTATTCCGCACTATTTTAAGCCTTCGTAAACTCATTGCCATTTTCTATCATAGTGGAGGATTGCTTCCAACGATTGGGAAATAAAAAATACAAAAAAACATTGCTATATTTCAAACACTCTGGATAGGCGGAGGGATTTATCTCCGTCCCTAACTTCCTTTTAATCCACATCGGAAGATTTAGTTTTTCTCTATGACTACCAGGAATGGGCATATATTGGTTCGATAAGCCAAGCAAAAATAACCAATATATATGAAGTGCAAGCAAGAATAGAGCAGAGAGGGTGTAGAACCTGTGCTGTCAGGCTTTTGATAGAATCTTTAGTATTGGGAGAACCTCGAATACTTTCTTCTTCTCCACCATCATCTTCGACTTTTTGTTTACATGTAATGCATGTCAACATTTTTAACTGTCTTCTGTTTTGTTCCTCTGTTTATACGCTATATATTCAGCTTTCTTCTTCTAACTGCAAATGAAATATAAATGAATCATGAAACATAAGTAAACAATCATATCACACTGATTTTTGATATATTCATTTTGTGTGTTTTTGCTAACAAGATCATTTCAAATTTAAAATACAAACAAACTTTCCTTTAATAAAAATGTAGAGCTGTGATTTTCAATATTTCGAGATATTGGGAGATAATGCATTAATTTTCAGTCACTGTCTTTCAAGGTAAAAACATTAAATAGCAAATGATAGCTGGAATTTTTTTTACATTTTTTAAATCCAAACTATCCAAGGGTGTCAAAACTATTAGAACCACCACCAAAGGTTGTGATGATTAACGAAATAGTAAGTATTTATTCATCTTTAATTAAATATTTTAAATTTGAGCGAGTCATATTTGATATAAAGTGATTTACCCCGAACATTCTCAGAAATAATATCAAATGAAAAAACCAATAAAGTTATAATGTACTTGAAAAGTGATTCAACAAGTTAATTATTACTGCTTCGTTGATCATTACAATTGGGTACAAGGACATTTGCAAAAATTAGGACCACCCTATGCTGACAACAAGGGAGGAAAATAGGATTCTAATTAGAAAATGACAATATTTATGGAGAACAAATAGATACAAGGAAAAGTTACTCATATTTTCTCTCACACTGAAGTTTTAGGTTTAAATAAACTACTAAAACCATAAAAGTTAAGATAGAGAGTGACAATTACTCGTCCATTGAGGTCTTGAGTTAAGTCATTTTTTATAAAAATGTTTTATCTTTAAAGTAAGATTTTTTTATGTGAATTCAAACTAATCAATTTTCTTTATGGATACTAACGTGAAATGAAAAAATAAAAAAAGTTAAAAAACAAGAAAAGCAATTCAACAAGTTAATTATTTCACTGATCATTAAAAGTTAGATACAATTGGGTGCAAGGACATTTTTAAAGATTAGGACCACTATGCTATTTAACAAGGACAAGGAAAATAGGATTCTAGTTAGAAAAGGAGAATATATATGCATATAAAAGGAAAAATTACTGACATATTCTTCCAATTCGAAACCATAATTTTTTCCATTAAAAAGAAGCCGATATAACATTCTTGACTTCTTGTACCTTATAGAAAAAAAATATTGACAATATTTTATGAGTGATCTAGTTAATAAATAACTTTTTTTTATTATTGGTACGTAATACTTTAGCTCGATTTTTTTTAAAAAAAAAAAGGACAAGAATTTGGGATTTTATAGGAGAAAAATGATATAATTAAATATTAAACGCTTAAAATCGCAAGTGGTGTCCTTGTGTTCTTGCTTTAATGTGCAAGTATGCCCAAAAACCCGAAAAAAGGAAAGAATAAAGATAGCAGACATTTCTACGCCTATTCATAATCCATTTGGGTCAGATTAATATTTAAGTGATAAAATATATTTTTTTAAATTTACTATTTTATAAATAAGTTTATTAAAACTAATAACAAACGTTTACGTATTCGATGTTTTATGAAATGAGATATCTTTTACTTTTACGAGTAAGGGTGGTGAAGTTAAAAATCAACATACGAGTTTGGTTGAATTTAATTAGAGTGATTGAAACGGAGAAACACATTTTTTTTAAAAATCCTTTTCAATTTCTATATGTTTGGTTATTCAAAATACAAATTACTTAAAAATTATAAAAATGACTTTTCTAATAGAAATAGAGAAAACAAATTGAATAAGTGACACGTAAAGATAATTGTCTCCTACACATCCATCCAACCGCTCTAACTCTGACCCCGTGACCATCACACCGAAGCCCAATTCCCCTCATCATCCCACCCTCATATTATTTTATTAAATTACATATAAATATTTTTGAGATACTATTTTTTTCCACTTACTTACCAAATATTAGAAAATATTTATACAAAAAATATTTTCCTATACACACGAGTTTCTACTGCTTAATAAATTCATTCAAAATATACAAAAGTTAAATTCAGAAACCGGCCTAATTACTATTCAAAAAATATTAGTTCCGGCTTTGCTTATAAATATTTAATTCAATAACCACTTCAAATAAAAACAAAAGAATACTTCATATAACTTTTTAGAAATCATATGATAAAATGAATAAAATAGTACTAGTATCAAATAAGATGGATTACGAATTTACTATGATCTACGGGCGTACAGCATAGCACCGAGGAGAGAGAATTAAGTAGCAGTGGCATGCAGTAGCAGTATTAACAGCAGAACTAGCAGAGCAGGAGATGTTTGTGGAATGAATGACCAATCGCTTTACAAATGAATAAACAATGTCCACCTTTGAAAGGTGCCATTCAATATTCAAATAGACAACAAATTTCTATTCGCGGCGTAGCAAAAATAATAAATTTTGATATTTTAAGATAAAAGATTAATAATAGGGTTTGAATCTATAATACTAGTATGAAAAATATTTATACCGCCTCATTCATTGCATTGCTTTGTCATATAAAATTTACAAATAAACTATTAAATTCGTTTAAATTCATGAATTCTCACTATAAACTATATATTCATTTGTAAATAGTTATCAATAGATAAGAATATAACTTTAATTTGTTATTGTTATTGTTGATATTTTACTTCATTTTTTAAAAAAATATGAAAAATATTTTGAAATCTTATGACTAATATACCTATGTTTAACTTCGAATTTGACTTTTCAAAAGGAAATTGAAAATCTATTGTTAAATAATAGCATAAATTAGTGGTCTACATATAGTCGGAGTAATATTCAATGTCTAGCAGGAGAACACTAGGTTAACTCTTTTATCTGCCTACTACTCTTGACAGAGTGACCCAAAATAGAGCTGTGGTTTAAAGTGGTTTATTGGAAATTTTTTCTCAACAAAATTAAAATATTTTATATATATGGTAAACGTTGAATTTTAAACTTTTAAAGGTATTTTACATTCACTGGCTTTTAAAGGTATTTTACATTCGAGTGAGGATTCTGTGGTGAACACTTTGTGCGCACTCGGTAAATCTTTCTTACCACACAGGAAACGTAAACAACCGCACTAGCCAAGATCTATGTGATAGACTCGACTCATAAGGCGTTGAGGGTAAACCCTTCTTATGTACGTAATACCTTACAAACCACACAGGACATGTAAACAACTGCACTAGGCAAGATCTATGCGACAAACTCAACTCATAAGACATTAAGGAGGGATCGATCTCGAGCTATTCATGTGGATAACATCCTCCAAACCAACTTAGTCATTCGAGAGACCTTTTTAAAGGTATTTATTTCTTTATTTTAAAAATTTTTTTAGTAAAAAAAAAACTTAGCTGCAACAGAAATTTCATTGTCTAAAGTTAACTCGATATTTGTACAAATGAGGGGGAGGTATAGTGAGGTGCACGTAAAAGCAATGCAATAGTGACACCAAAATGGAGTTGGAAGATTCATACCTCAAACCGCTACTGGCCGGAGCTAGCTAGATAATCATCTTAAACTCACCGATAAAAATGGCGTCCACAGCAACAATCTGCTTTGCTCCGTCACTTACATATTCAGTAACCAGAGAGAACGCAGGCGAAAATCCTTAAGCAAGACATTCAAATTCCAAATCAAATCAATAACAGCGAAAATATCGAAAATCCGGCTCACACTCTCAATAGCAATAGTGTATCACATAATCAAATGAGTGAAATAGATATAATCGGTAAATCAATACCTCAAATCATCATCTCACGAGTAAAATGGCGTCCGGAGCAACAAACTCTGTTACGTATTCGAAATACGTGAAAATGAAGGGGGAGATCCTAAGCAAATCGTACAGATATCAAATCAAATAACAGGGAAAACATTGAAAAGAAGCTCTCTCTCTCTCAGAAAAATCCATACCTCAAATGACTACTGACCGGAGCTGATAATCATCTGAAAGTCACCGGTAAAAATGCCGTTCAGAGAGAGCTATAATCTACTTTCGCTCTATTCTCTTTACACATTCAAAAAAACGAGGAAAATCCTTAATCAACGGTTCCAATATCAAATCAATAACAGCAAAATATCGAATAATCCGCTCTCACTCTCTAAACAGAGAGCAACAATTTGCTTTTGCTCTATTCTATTGACATATTCAAAAAAACGAGAAAATGCAGGGGAAAATCCTTAATCAACGGTTCCAATAT</genome_strand>
        <mrna_strand>GGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACCCCCCCCA-AAGGGGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAATTTTTTTAG-GGGCCCCCAAA-AAAGGGGGGGGAAAAAG-G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAA-ATTTTTTC-CGGGGGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720760" ref_strand="+" ref_description="SGN-E720760 [FC11DB01]">
      <seq>ggcttattttctacccccataaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccccccaaaagggcccctttgaattttttttggggcccccaaaaaaggggggggaaaacgggggaaaatttttttccgggggaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1346" stop="64837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1645" g_stop="1803" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="290" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="520" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4764" i_stop="7917" i_length="3154">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7918" g_stop="7953" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="556" r_length="36" r_score="0.778"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7954" i_stop="8774" i_length="821">
            <donor d_prob="0.534" d_score="0.00"/>
            <acceptor a_prob="0.075" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8775" g_stop="8805" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="587" r_length="31" r_score="0.548"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8806" i_stop="11160" i_length="2355">
            <donor d_prob="0.506" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11161" g_stop="11245" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="670" r_length="83" r_score="0.494"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E720760" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1645" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
          <exon e_start="7918" e_stop="7953"/>
          <exon e_start="8775" e_stop="8805"/>
          <exon e_start="11161" e_stop="11245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAAGATCAAGATATGTCTCTGCCCCCCTTGGGGCATCCTCATCCCACAGGGGCGGAGCTAGAAGGTTATCGTAAGGGTACAACCGAATCCAGATCTACTATATGTATACAAAAACTTAGCTCCGAGCCACATTACATACACGTGATGTTGCTATTTTAGAATTTAGAATTTCATAAAGTTAAAATCTTTGGCTCCAACTCCGTCACCCTTATCATAGATGGTGATGTTAACTTTGCTTCGAGGATGGCAAAATATTCCACTTTGAGTACCCTTATAAGTCATGGGAAATGCTGATAATTAATATGGAATCCTAAAGGTATTGTGCTTGTATTCTCTCCCAGTTCTGCTCCCACCACTGTTTTGCGTTCACCTCTCCAAATTTTTCACGACTGAGTTAATGAAGAAGAAGTTAGAGAAATGCCAGTTGAAATTGCACTATCAACACATGAACTGACTTCCCTCGTATCAGACACTAGGAATGTCTACACTAGGTTACCTATGCTTCATCGTATATGGCACGTTAGAACGAAATAAAACAGAAGTTGTGAATTACCTGAATCTAACTCGACGTAGCTCTCTAGTTCCATCAGCTAATTGTCTGATAGTTATACACACTCCAGGTTCATCTTGTTCTATCCATTCTGACTCCATATCACTAGCATTACTTACAGAAACTGAAGCTTCGTCTCTAGAGGAGGTTGTCGTTCTTGATACCCCACTGCCCTTTGGGAAACTAGGGACATGAGCACCTAATCCAGCATTGTATTGTTGGAAATCCCTTGCAGATCCCGGCCTTGACGAATAATTTGAATCTCTCTGCAGAAAAAAGACCTTAAATTTCATTTACTTTCTTAAACTCTGTGTCAAATCAAAACCAGACAAAGAAAGTCTTACCCCATCCTCAGACTGTGAGGGTGTGTGAAGAGCATACTTATTAAATCTCTGAACATTGTAAAGCTCCATAATTCTGTCATAATTTTCACCCCACCATCTTTGAGCTTGCCATTTGTTGAACACGTCCCGACTTCAAAATAACAAATCAAATCTACTTTCTTAAACGACGTATCAAGTCAAAACTAGACAAAATAAAATTGAAACGCGGGGAGTAAAATGAAAGGAGATGATGAATAGATACCTAAATCTGATTCTTTTAAGATCATTTCCACCATGAGGAAGAGAATCAAAAGTAATCTGAATTCCAGGCTCCACTTGTGCTGTCCACTCTTTAGCCTCCTCTTCATCTTCCAACATCACATCACTTAATCTAGGATCAGTTCTAGTTGGTGTTTGGAAATGACCAGTACTTGTAAAATCCCAAGCTGGAGTAGAATTTGAACTTCCTGTTTGGTAATTATATAAAACTCCCTTAGAGATTGCATCAAAATCTGGATATGGATATGGTCCATGCCCTTTCTTGTAATTGTTGGTGGGTATACTACTTGACTTGCACCTATAAGCACCAGTGACCTTCAATGCTATATCTTTAATCTGCAATTGATTTAAAAAAAATTGAAAATATTGTAATAATATAAAAGAGTACTGAATCGTAGGTCTCTAACAGATATTCATCCATTATAAGTTCTCTTTATCTGTCTCAAGTCTTGCCGAGTAGAGTTATCCAATAGAATATAGTCAATGTCCACGCTTAGTTGATCCATGATTTATTGTTTAATCGTTCGTTGATCCGTTCATATTCCAATCAAGATGTATAGATCTTATTTATGGAGTAACGTAAAATATACAGAAACTCTATTTGCCTCTCGTTCTGAATCTAGTGATCAACCTATTCCGCACTATTTTAAGCCTTCGTAAACTCATTGCCATTTTCTATCATAGTGGAGGATTGCTTCCAACGATTGGGAAATAAAAAATACAAAAAAACATTGCTATATTTCAAACACTCTGGATAGGCGGAGGGATTTATCTCCGTCCCTAACTTCCTTTTAATCCACATCGGAAGATTTAGTTTTTCTCTATGACTACCAGGAATGGGCATATATTGGTTCGATAAGCCAAGCAAAAATAACCAATATATATGAAGTGCAAGCAAGAATAGAGCAGAGAGGGTGTAGAACCTGTGCTGTCAGGCTTTTGATAGAATCTTTAGTATTGGGAGAACCTCGAATACTTTCTTCTTCTCCACCATCATCTTCGACTTTTTGTTTACATGTAATGCATGTCAACATTTTTAACTGTCTTCTGTTTTGTTCCTCTGTTTATACGCTATATATTCAGCTTTCTTCTTCTAACTGCAAATGAAATATAAATGAATCATGAAACATAAGTAAACAATCATATCACACTGATTTTTGATATATTCATTTTGTGTGTTTTTGCTAACAAGATCATTTCAAATTTAAAATACAAACAAACTTTCCTTTAATAAAAATGTAGAGCTGTGATTTTCAATATTTCGAGATATTGGGAGATAATGCATTAATTTTCAGTCACTGTCTTTCAAGGTAAAAACATTAAATAGCAAATGATAGCTGGAATTTTTTTTACATTTTTTAAATCCAAACTATCCAAGGGTGTCAAAACTATTAGAACCACCACCAAAGGTTGTGATGATTAACGAAATAGTAAGTATTTATTCATCTTTAATTAAATATTTTAAATTTGAGCGAGTCATATTTGATATAAAGTGATTTACCCCGAACATTCTCAGAAATAATATCAAATGAAAAAACCAATAAAGTTATAATGTACTTGAAAAGTGATTCAACAAGTTAATTATTACTGCTTCGTTGATCATTACAATTGGGTACAAGGACATTTGCAAAAATTAGGACCACCCTATGCTGACAACAAGGGAGGAAAATAGGATTCTAATTAGAAAATGACAATATTTATGGAGAACAAATAGATACAAGGAAAAGTTACTCATATTTTCTCTCACACTGAAGTTTTAGGTTTAAATAAACTACTAAAACCATAAAAGTTAAGATAGAGAGTGACAATTACTCGTCCATTGAGGTCTTGAGTTAAGTCATTTTTTATAAAAATGTTTTATCTTTAAAGTAAGATTTTTTTATGTGAATTCAAACTAATCAATTTTCTTTATGGATACTAACGTGAAATGAAAAAATAAAAAAAGTTAAAAAACAAGAAAAGCAATTCAACAAGTTAATTATTTCACTGATCATTAAAAGTTAGATACAATTGGGTGCAAGGACATTTTTAAAGATTAGGACCACTATGCTATTTAACAAGGACAAGGAAAATAGGATTCTAGTTAGAAAAGGAGAATATATATGCATATAAAAGGAAAAATTACTGACATATTCTTCCAATTCGAAACCATAATTTTTTCCATTAAAAAGAAGCCGATATAACATTCTTGACTTCTTGTACCTTATAGAAAAAAAATATTGACAATATTTTATGAGTGATCTAGTTAATAAATAACTTTTTTTTATTATTGGTACGTAATACTTTAGCTCGATTTTTTTTAAAAAAAAAAAGGACAAGAATTTGGGATTTTATAGGAGAAAAATGATATAATTAAATATTAAACGCTTAAAATCGCAAGTGGTGTCCTTGTGTTCTTGCTTTAATGTGCAAGTATGCCCAAAAACCCGAAAAAAGGAAAGAATAAAGATAGCAGACATTTCTACGCCTATTCATAATCCATTTGGGTCAGATTAATATTTAAGTGATAAAATATATTTTTTTAAATTTACTATTTTATAAATAAGTTTATTAAAACTAATAACAAACGTTTACGTATTCGATGTTTTATGAAATGAGATATCTTTTACTTTTACGAGTAAGGGTGGTGAAGTTAAAAATCAACATACGAGTTTGGTTGAATTTAATTAGAGTGATTGAAACGGAGAAACACATTTTTTTTAAAAATCCTTTTCAATTTCTATATGTTTGGTTATTCAAAATACAAATTACTTAAAAATTATAAAAATGACTTTTCTAATAGAAATAGAGAAAACAAATTGAATAAGTGACACGTAAAGATAATTGTCTCCTACACATCCATCCAACCGCTCTAACTCTGACCCCGTGACCATCACACCGAAGCCCAATTCCCCTCATCATCCCACCCTCATATTATTTTATTAAATTACATATAAATATTTTTGAGATACTATTTTTTTCCACTTACTTACCAAATATTAGAAAATATTTATACAAAAAATATTTTCCTATACACACGAGTTTCTACTGCTTAATAAATTCATTCAAAATATACAAAAGTTAAATTCAGAAACCGGCCTAATTACTATTCAAAAAATATTAGTTCCGGCTTTGCTTATAAATATTTAATTCAATAACCACTTCAAATAAAAACAAAAGAATACTTCATATAACTTTTTAGAAATCATATGATAAAATGAATAAAATAGTACTAGTATCAAATAAGATGGATTACGAATTTACTATGATCTACGGGCGTACAGCATAGCACCGAGGAGAGAGAATTAAGTAGCAGTGGCATGCAGTAGCAGTATTAACAGCAGAACTAGCAGAGCAGGAGATGTTTGTGGAATGAATGACCAATCGCTTTACAAATGAATAAACAATGTCCACCTTTGAAAGGTGCCATTCAATATTCAAATAGACAACAAATTTCTATTCGCGGCGTAGCAAAAATAATAAATTTTGATATTTTAAGATAAAAGATTAATAATAGGGTTTGAATCTATAATACTAGTATGAAAAATATTTATACCGCCTCATTCATTGCATTGCTTTGTCATATAAAATTTACAAATAAACTATTAAATTCGTTTAAATTCATGAATTCTCACTATAAACTATATATTCATTTGTAAATAGTTATCAATAGATAAGAATATAACTTTAATTTGTTATTGTTATTGTTGATATTTTACTTCATTTTTTAAAAAAATATGAAAAATATTTTGAAATCTTATGACTAATATACCTATGTTTAACTTCGAATTTGACTTTTCAAAAGGAAATTGAAAATCTATTGTTAAATAATAGCATAAATTAGTGGTCTACATATAGTCGGAGTAATATTCAATGTCTAGCAGGAGAACACTAGGTTAACTCTTTTATCTGCCTACTACTCTTGACAGAGTGACCCAAAATAGAGCTGTGGTTTAAAGTGGTTTATTGGAAATTTTTTCTCAACAAAATTAAAATATTTTATATATATGGTAAACGTTGAATTTTAAACTTTTAAAGGTATTTTACATTCACTGGCTTTTAAAGGTATTTTACATTCGAGTGAGGATTCTGTGGTGAACACTTTGTGCGCACTCGGTAAATCTTTCTTACCACACAGGAAACGTAAACAACCGCACTAGCCAAGATCTATGTGATAGACTCGACTCATAAGGCGTTGAGGGTAAACCCTTCTTATGTACGTAATACCTTACAAACCACACAGGACATGTAAACAACTGCACTAGGCAAGATCTATGCGACAAACTCAACTCATAAGACATTAAGGAGGGATCGATCTCGAGCTATTCATGTGGATAACATCCTCCAAACCAACTTAGTCATTCGAGAGACCTTTTTAAAGGTATTTATTTCTTTATTTTAAAAATTTTTTTAGTAAAAAAAAAACTTAGCTGCAACAGAAATTTCATTGTCTAAAGTTAACTCGATATTTGTACAAATGAGGGGGAGGTATAGTGAGGTGCACGTAAAAGCAATGCAATAGTGACACCAAAATGGAGTTGGAAGATTCATACCTCAAACCGCTACTGGCCGGAGCTAGCTAGATAATCATCTTAAACTCACCGATAAAAATGGCGTCCACAGCAACAATCTGCTTTGCTCCGTCACTTACATATTCAGTAACCAGAGAGAACGCAGGCGAAAATCCTTAAGCAAGACATTCAAATTCCAAATCAAATCAATAACAGCGAAAATATCGAAAATCCGGCTCACACTCTCAATAGCAATAGTGTATCACATAATCAAATGAGTGAAATAGATATAATCGGTAAATCAATACCTCAAATCATCATCTCACGAGTAAAATGGCGTCCGGAGCAACAAACTCTGTTACGTATTCGAAATACGTGAAAATGAAGGGGGAGATCCTAAGCAAATCGTACAGATATCAAATCAAATAACAGGGAAAACATTGAAAAGAAGCTCTCTCTCTCTCAGAAAAATCCATACCTCAAATGACTACTGACCGGAGCTGATAATCATCTGAAAGTCACCGGTAAAAATGCCGTTCAGAGAGAGCTATAATCTACTTTCGCTCTATTCTCTTTACACATTCAAAAAAACGAGGAAAATCCTTAATCAACGGTTCCAATATCAAATCAATAACAGCAAAATATCGAATAATCCGCTCTCACTCTCTAAACAGAGAGCAACAATTTGCTTTTGCTCTATTCTATTGACATATTCAAAAAAACGAGAAAATGCAGGGGAAAATCCTTAATCAACGGTTCCAAT</genome_strand>
        <mrna_strand>GGCTTATTTTCTACCCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACCCCCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGGCCCCTTTG-AATTTTTTTTGGGGCCCCCAAAAAAGGGGGGGGAAAACGGGGGAAAAT-TTTTTTCCGGGGGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733687" ref_strand="+" ref_description="SGN-E733687 [LB10CG02]">
      <seq>cataaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1362" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1662" g_stop="1803" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="240" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="273" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="503" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E733687" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1662" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>CATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549249" ref_strand="+" ref_description="SGN-E549249 [TUS-68-K20]">
      <seq>aaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatanttgtggattttataaaananannnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1365" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1665" g_stop="1803" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="237" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="501" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="526"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E549249" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1665" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATA-TTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATANTTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312558" ref_strand="+" ref_description="SGN-E312558 [cLEZ-20-A12]">
      <seq>aatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1366" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1666" g_stop="1803" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="236" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="269" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="499" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="513"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E312558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1666" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234463" ref_strand="+" ref_description="SGN-E234463 [cLEL-8-J18](-)">
      <seq>tccgtcgcaactccgataaaaaaaaatgcggccggcggcggtgctactggtgtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1389" stop="105020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1689" g_stop="1803" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="210" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="243" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="473" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4764" i_stop="4827" i_length="64">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4828" g_stop="4843" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="489" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E234463" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1689" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
          <exon e_start="4828" e_stop="4843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAA</genome_strand>
        <mrna_strand>TCCGTCGCAACTCCGATA-AAAAAAAAT-GCGGCCGGCGGCGGTGCTACTGGT-GTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713377" ref_strand="+" ref_description="SGN-E713377 [FB08BH05]">
      <seq>gtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1392" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1692" g_stop="1803" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="210" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="243" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4758" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="468" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="489"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E713377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1692" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTT</genome_strand>
        <mrna_strand>GTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540617" ref_strand="+" ref_description="SGN-E540617 [TUS-60-P20](-)">
      <seq>aaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctccttttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1411" stop="5054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1711" g_stop="1803" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="191" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="453" r_length="229" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E540617" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1711" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTTTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTG-GGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540620" ref_strand="+" ref_description="SGN-E540620 [TUS-60-P20]">
      <seq>aaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1411" stop="5054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1711" g_stop="1803" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="191" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="454" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E540620" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1711" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540624" ref_strand="+" ref_description="SGN-E540624 [TUS-60-P24](-)">
      <seq>aaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1411" stop="5047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1711" g_stop="1803" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="191" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4747" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="438" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E540624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1711" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATA</genome_strand>
        <mrna_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289620" ref_strand="+" ref_description="SGN-E289620 [cLET-4-F23]">
      <seq>aaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1412" stop="5054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1712" g_stop="1803" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="190" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="223" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="453" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E289620" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1712" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548416" ref_strand="+" ref_description="SGN-E548416 [TUS-60-P24]">
      <seq>aaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1412" stop="5054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1712" g_stop="1803" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="190" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="223" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="453" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E548416" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1712" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233873" ref_strand="+" ref_description="SGN-E233873 [cLEL-8-J18](-)">
      <seq>aaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctcccccaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1487" stop="105020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1787" g_stop="1803" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1881" g_stop="1978" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="116" r_length="99" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="149" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="379" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4764" i_stop="4827" i_length="64">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4828" g_stop="4843" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="395" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E233873" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1787" e_stop="1803"/>
          <exon e_start="1881" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
          <exon e_start="4828" e_stop="4843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCT-CCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAA</genome_strand>
        <mrna_strand>AAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCCCCAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308978" ref_strand="+" ref_description="SGN-E308978 [cLEY-23-F11]">
      <seq>ctcgtgccgaattcggcacgaggattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="1633" stop="5063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1911" g_stop="1978" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2835" g_stop="2867" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="97" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4534" g_stop="4763" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="327" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E308978" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1911" e_stop="1978"/>
          <exon e_start="2835" e_stop="2867"/>
          <exon e_start="4534" e_stop="4763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>CTC-GTGCCG-AATTCGGCAC-GAGG-ATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698525" ref_strand="+" ref_description="SGN-E698525 [FA06CF10]">
      <seq>agaaagggcatggaccatatccatatccttattttgatgcaatctctaagggagttttatataattaccaaacaggaagttcaaattctactccagcttgggattttacaagtactggtcatttccaaacaccaactagaactgatcctagattaagtgatgtgatgttggaagatgaagaggaggctaaagagtggacagcacaagtggagcctggaattcagattacttttgattctcttcctcatggtggaaatgatcttaaaagaatcagatttagtcgggacgtgttcaacaaatggcaagctcaaagatggtggggtgaaaattatgacagaattatggagctttacaatgttcagagatttaataagtatgctcttcacacaccctcacagtctgaggatgggagagattcaaattattcgtcaaggccgggatctgcaagggatttccaacaatacaatgctggattaggtgctcatgtccctagtttcccaaagggcagtggggtatcaagaacgacaacctcctctagagacgaagcttcagtttctgtaagtaatgctagtgatatggagtcagaatggatagaaccagatgaacctggagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="6555" stop="5152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6255" g_stop="5976" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5975" i_stop="5865" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5864" g_stop="5735" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="410" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5734" i_stop="5657" i_length="78">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5656" g_stop="5452" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="615" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E698525" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6255" e_stop="5976"/>
          <exon e_start="5864" e_stop="5735"/>
          <exon e_start="5656" e_stop="5452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAGGTATCTATTCATCATCTCCTTTCATTTTACTCCCCGCGTTTCAATTTTATTTTGTCTAGTTTTGACTTGATACGTCGTTTAAGAAAGTAGATTTGATTTGTTATTTTGAAGTCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGGGTAAGACTTTCTTTGTCTGGTTTTGATTTGACACAGAGTTTAAGAAAGTAAATGAAATTTAAGGTCTTTTTTCTGCAGAGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGT</genome_strand>
        <mrna_strand>AGAAAGGGCATGGACCATATCCATATCCTTATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG...............................................................................................................TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG..............................................................................AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACCAGATGAACCTGGAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551047" ref_strand="+" ref_description="SGN-E551047 [TUS-54-P19]">
      <seq>caccaccaaccaattaaaacaatgtgaagagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaaaaattgtattatctcctttaaatccactaatatcaaaaaacaaacactttcaaattcccaaatccaaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaaaaaaattaccaaaaaatccaagaaaataccaaaacaagaaaatgaagatcaatacgacgatnacgatgataatgatgatgatgatgaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaaggggattttcagttggaattcctttgtttatgggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtacctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18014" stop="16889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17714" g_stop="17189" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E551047" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17714" e_stop="17189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</genome_strand>
        <mrna_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAAAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAAAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATNACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAAGGGGATTTTCAGTTGGAATTCCTTTGTTTATGGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688828" ref_strand="+" ref_description="SGN-E688828 [t3_tus_54_P19]">
      <seq>caccaccaaccaattaaaacaatgtgaagagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaaaaattgtattatctcctttaaatccactaatatcaaaaaacaaacactttcaaattcccaaatccaaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaaaaaaattaccaaaaaatccaagaaaataccaaaacaagaaaatgaagatcaatacgacgatnacgatgataatgatgatgatgatgaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaaggggattttcagttggaattcctttgtttatgggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtacctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18014" stop="16889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17714" g_stop="17189" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E688828" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17714" e_stop="17189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</genome_strand>
        <mrna_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAAAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAAAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATNACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAAGGGGATTTTCAGTTGGAATTCCTTTGTTTATGGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258307" ref_strand="+" ref_description="SGN-E258307 [cLEG-49-O10]">
      <seq>accaccaaccaattaaaacaatgtgaaaagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaagaattgtattatctcctttaaatccgctaatatcaaaaaacaaacactttcaaattcccaaatccgaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaacttcccctaagaaaattaccaaaaaatccaagaaaataccaacactagaaaatgaagatccatacgacgataacgatgattatgatgatgatgatgaaccagaaagatgacggataccagagatagcaactaatacaatgataagtagaatgggattttcagttggaattcccttggttattgggttattgcggtttcctttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18013" stop="16989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17713" g_stop="17272" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E258307" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17713" e_stop="17272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTA</genome_strand>
        <mrna_strand>ACCACCAACCAATTAAAACAATGTGAAAAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCGCTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCGAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGAACTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAACACTAGAAAATGAAGATCCATACGACGATAACGATGATTATGATGATGATGATGAACCAGAAAGATGACGGATACCAGAGATAGCAACTAATACAATGATAAGTAGAATGGGATTTTCAGTTGGAATTCCCTTGGTTATTGGGTTATTGCGGTTTCCTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746769" ref_strand="+" ref_description="SGN-E746769 [GI|47104513]">
      <seq>actactatattaacaaaatttcaatttcaaataatttttccttcgagcttcgcgaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaacaaggcatcaatagcttatttcatccttgcaaaggttcaaaggattaagcaacatgttgaggagcacaatcccagaagggttaatatacattgcacacttcacagcattggccttagtttttttgccttcccacagatagtagggagcatataggtagaagaaaaaagagcatttacagttgcagttgttaacatgctttcatttcttttagtttggtaaacattgtttgaatgaaagtgagaatttgaattaatacggaaaagggtcaaaaatgtctctgaactatcgcgaaaggtcataatatacccttcgtctttgtccatctattatgctaataatacttttcggatttttagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18021" stop="105020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18321" g_stop="18403" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18404" i_stop="19915" i_length="1512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19916" g_stop="20162" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="330" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20320" g_stop="20592" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="603" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20593" i_stop="21541" i_length="949">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21542" g_stop="21880" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="942" r_length="339" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E746769" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18321" e_stop="18403"/>
          <exon e_start="19916" e_stop="20162"/>
          <exon e_start="20320" e_stop="20592"/>
          <exon e_start="21542" e_stop="21880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAGGTATGCTACAGAGTGCTCACAAATGGAAGTAGTACTGTATTACAGTTAAACCATGATTAGACTTTTCATGCTACTTTGTTCTGATTCTTTAAACAGTGTAATATCGGTGTCATCAAATGTGATTATTGACGGGGAAGGAACTTGATCTACCCTTGGTCAAAATGGTTATTGGTTCGGATTGGTGTGCAATTTGCAACTAAGATTGCTTTTTCATTTTACAATCATATCAACCACTTTTTTCCAACATTGACCATCTCCGACTGTTTTATGTTACTATGATTGAAGAAGTACTCACCAATTATATTCGTTTTTCATGGAGCACAAAGTCAATTCAAGACGACATTTTGGTGATAAAAGTGGGAAGAAGTAAAGAGTGTGTGTTGTGTGGGGGTAGATGGCGGATTAGATAGGACGAGAAACAGGACATAACTCCTACTTTCCTATGTATGAATCTTTTATGTCAAGTTTGTTACATTTATTAGGTGTAATCTGAAGCTAGATAATGATATCGATGTTTTTGTCAACGTTTTAGATTGAACATGAGCACTGTTTCCTTCATGACTTGTTCGGGGATCGTTACTGTTTCCTTCTGGTTCACTGAAACTGTGTTATGTATAGTCTTATCTTGAATCTGTGTTGAACTGTTAAATGTTGTTGAATAACAAAGCCGGTACTCTATCTGCAATCATTTGTTCCCTTTACTGATACTTCCACGCTAATATACAACGCGTTGTCATCTGTGTAGTCTATCGTGCTGTCATTTATAACTGTTCTACAACCATGACATTGCCAGTGTTGAGTACCTCATATGGATACTTGCACACACTCATATATCTGATATATACCATAAATGAATCCGCGTAACGTACATGTATTCAGTATCCACCTCTTACTGCAATTCAGAGAACACAAATAACTTCTCACGTTGTCGTGTATCGATTTCTTGCAGGTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGTACTGTGTGTATGTAA</genome_strand>
        <mrna_strand>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200784" ref_strand="+" ref_description="SGN-E200784 [cLEC-9-M18]">
      <seq>ctactatattaacaaaatttcaatttcaaataatttttccttcgagcttcgcgaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtcccttacaatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18022" stop="20462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18322" g_stop="18403" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18404" i_stop="19915" i_length="1512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19916" g_stop="20162" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="330" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E200784" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18322" e_stop="18403"/>
          <exon e_start="19916" e_stop="20162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGT-CCTTACAATG</genome_strand>
        <mrna_strand>CTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCCTTACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311314" ref_strand="+" ref_description="SGN-E311314 [cLEZ-18-G21]">
      <seq>gaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaagcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18074" stop="20858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18374" g_stop="18403" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18404" i_stop="19915" i_length="1512">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19916" g_stop="20162" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="277" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20320" g_stop="20558" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="516" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E311314" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18374" e_stop="18403"/>
          <exon e_start="19916" e_stop="20162"/>
          <exon e_start="20320" e_stop="20558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAA</genome_strand>
        <mrna_strand>GAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAAGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371383" ref_strand="+" ref_description="SGN-E371383 [TUS-27-M3]">
      <seq>aacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggctttcaagaaagagtgattcagtctttttcaagcataaggtttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="18075" stop="20848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18375" g_stop="18403" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18404" i_stop="19915" i_length="1512">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19916" g_stop="20162" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="276" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20320" g_stop="20548" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="506" r_length="230" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E371383" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18375" e_stop="18403"/>
          <exon e_start="19916" e_stop="20162"/>
          <exon e_start="20320" e_stop="20548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGG-TTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGA</genome_strand>
        <mrna_strand>AACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTTCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271279" ref_strand="+" ref_description="SGN-E271279 [cLEM-5-H7]">
      <seq>atgattattaaagggtctgttcaggagaataccaaagaatggaatccagtgcatcctaccatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="19622" stop="20857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19922" g_stop="20162" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20320" g_stop="20557" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="483" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E271279" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19922" e_stop="20162"/>
          <exon e_start="20320" e_stop="20557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTA-TAAAGGGTCTGTTCAGGAG-ATACGAAAG-ATGGAATCCAGTGCATCCTA-CATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAA</genome_strand>
        <mrna_strand>ATGATTATTAAAGGGTCTGTTCAGGAGAATACCAAAGAATGGAATCCAGTGCATCCTACCATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371382" ref_strand="+" ref_description="SGN-E371382 [TUS-27-M3](-)">
      <seq>tatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaacaaggcatcaatagcttatttcatccttgcaaaggttcaaaggattaagcaacatgttgaggagcacaatcccagaagggttaatatacattgcacacttcacagcattggccttagtttttttgccttcccacagatagtagggagcatataggtagaagaaaaaagagcatttacagttgcagttgttaacatgctttcatttcttttagtttggtaaacattgtttgaatgaaagtgagaatttgaattaatacggaaaagggtcaaaaatgtctctgaactatcgcgaaaggtcataatatacccttcgtctttgtccatctattatgctaataatacttttcggatttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="19760" stop="22163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20060" g_stop="20162" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20320" g_stop="20592" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="376" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20593" i_stop="21541" i_length="949">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21542" g_stop="21863" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="698" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="709"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E371382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20060" e_stop="20162"/>
          <exon e_start="20320" e_stop="20592"/>
          <exon e_start="21542" e_stop="21863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAGGTATGCTACAGAGTGCTCACAAATGGAAGTAGTACTGTATTACAGTTAAACCATGATTAGACTTTTCATGCTACTTTGTTCTGATTCTTTAAACAGTGTAATATCGGTGTCATCAAATGTGATTATTGACGGGGAAGGAACTTGATCTACCCTTGGTCAAAATGGTTATTGGTTCGGATTGGTGTGCAATTTGCAACTAAGATTGCTTTTTCATTTTACAATCATATCAACCACTTTTTTCCAACATTGACCATCTCCGACTGTTTTATGTTACTATGATTGAAGAAGTACTCACCAATTATATTCGTTTTTCATGGAGCACAAAGTCAATTCAAGACGACATTTTGGTGATAAAAGTGGGAAGAAGTAAAGAGTGTGTGTTGTGTGGGGGTAGATGGCGGATTAGATAGGACGAGAAACAGGACATAACTCCTACTTTCCTATGTATGAATCTTTTATGTCAAGTTTGTTACATTTATTAGGTGTAATCTGAAGCTAGATAATGATATCGATGTTTTTGTCAACGTTTTAGATTGAACATGAGCACTGTTTCCTTCATGACTTGTTCGGGGATCGTTACTGTTTCCTTCTGGTTCACTGAAACTGTGTTATGTATAGTCTTATCTTGAATCTGTGTTGAACTGTTAAATGTTGTTGAATAACAAAGCCGGTACTCTATCTGCAATCATTTGTTCCCTTTACTGATACTTCCACGCTAATATACAACGCGTTGTCATCTGTGTAGTCTATCGTGCTGTCATTTATAACTGTTCTACAACCATGACATTGCCAGTGTTGAGTACCTCATATGGATACTTGCACACACTCATATATCTGATATATACCATAAATGAATCCGCGTAACGTACATGTATTCAGTATCCACCTCTTACTGCAATTCAGAGAACACAAATAACTTCTCACGTTGTCGTGTATCGATTTCTTGCAGGTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTA</genome_strand>
        <mrna_strand>TATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267144" ref_strand="+" ref_description="SGN-E267144 [cLEI-4-L6]">
      <seq>cgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcactactgggagcagcaaaacaagcggcaatttccaacgtaacagcagtgaaagcttccagaacacgccactatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30125" stop="27712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29825" g_stop="29673" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29672" i_stop="28310" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28309" g_stop="28012" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="451" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E267144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29825" e_stop="29673"/>
          <exon e_start="28309" e_stop="28012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</genome_strand>
        <mrna_strand>CGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315898" ref_strand="+" ref_description="SGN-E315898 [cTOA-26-M8]">
      <seq>atgtcccaatgcttccttttagcttaatctctcaattaactcatccaaatttgtactaaatcaacctcaaaaatctccatttttaagctaatggaggtactaatcaaacttaatcaacccccttaatgataattatccaaaaccctagatctgtccccttattaggtaactccaacaacttttgctctctatatctcatacactgaaagtctgaaacacctttatattaactccagtggtgataataatttctgggtacagctttttttggtgaattgtgaagtgggtatttggggatttttgttttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatggggagaaagttgatcctgagccaggaaggtgtagaaggacagatgggaagaaagtggangtgcgcccaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcactactgggagcagcaaaacaagcggcaatttccaacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30479" stop="27749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30179" g_stop="29673" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29672" i_stop="28310" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28309" g_stop="28049" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="769" r_length="262" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E315898" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30179" e_stop="29673"/>
          <exon e_start="28309" e_stop="28049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAG-AAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTA</genome_strand>
        <mrna_strand>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGGAGAAAGTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGGAAGAAAGTGGANGTGCGCCCAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276242" ref_strand="+" ref_description="SGN-E276242 [cLEN-21-P22]">
      <seq>tttcttttttatgtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30175" stop="27786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29875" g_stop="29673" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29672" i_stop="28310" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28309" g_stop="28086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="427" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E276242" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29875" e_stop="29673"/>
          <exon e_start="28309" e_stop="28086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACT</genome_strand>
        <mrna_strand>TTTCTTTTTTATGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313306" ref_strand="+" ref_description="SGN-E313306 [cTOA-13-K23]">
      <seq>cttttaacttaatctctcaattaactcatccaaatttgtactaaatcaacctcaaaaatctccatttttaagctaatggaagtactaatcaaacttaatcaacccccttaatgataattatccaaaaccctagatctgtccccttattaggtaactccaacaacttttgctctctatatctcatacactgaaagtctgaaacacctttatattaactccagtggtgataataatttctgggtacagctttttttggtgaattgtgaagtgggtatttggggatttttgttttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="30464" stop="27985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30164" g_stop="29673" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29672" i_stop="28310" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28309" g_stop="28285" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="517" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E313306" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30164" e_stop="29673"/>
          <exon e_start="28309" e_stop="28285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAA</genome_strand>
        <mrna_strand>CTTTTAACTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAAGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394145" ref_strand="+" ref_description="SGN-E394145 [TUS-42-A9]">
      <seq>cgaaaaatcattttttacaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttccgaaaatcgtgagtcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="32541" stop="38340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32841" g_stop="32914" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34595" g_stop="34643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="123" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="232" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="326" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37929" g_stop="38040" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="572" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E394145" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32841" e_stop="32914"/>
          <exon e_start="34595" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAA</genome_strand>
        <mrna_strand>CGAAAAATCATTTTTTACAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCCGAAAATCGTGAGTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393838" ref_strand="+" ref_description="SGN-E393838 [TUS-41-B9]">
      <seq>cgaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcagcactgtatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="32541" stop="35891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32841" g_stop="32914" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34595" g_stop="34643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="123" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="232" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E393838" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32841" e_stop="32914"/>
          <exon e_start="34595" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA</genome_strand>
        <mrna_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275635" ref_strand="+" ref_description="SGN-E275635 [cLEN-18-G21]">
      <seq>gaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaagaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="32542" stop="38398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32842" g_stop="32914" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34595" g_stop="34643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="122" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="325" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="459" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="623" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E275635" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32842" e_stop="32914"/>
          <exon e_start="34595" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</genome_strand>
        <mrna_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAAGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338274" ref_strand="+" ref_description="SGN-E338274 [cTOE-13-I24]">
      <seq>gaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcatggagtaagggtgcacaattaagacagcacattgattctactttatgcagcggaaacttgagagaggctgtaaggcttcctcctgaggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactggccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="32542" stop="37815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32842" g_stop="32914" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34595" g_stop="34643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="122" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="325" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37418" g_stop="37515" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E338274" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32842" e_stop="32914"/>
          <exon e_start="34595" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTC</genome_strand>
        <mrna_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCATGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTATGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGAGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGGCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719634" ref_strand="+" ref_description="SGN-E719634 [FC08BG02]">
      <seq>aaaaatcattttttaaaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcaaaaaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaaaacagcacattgattctactttaggcagcgaaaacttgaaagaggctgtaaggcttcctcctggggaaaatattaatgaatggctagctgtcaacactgtaaatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccaaaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaaaaagcctattgaagtttctgctccaaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaaaacaatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcaaaaaatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="32543" stop="38955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32843" g_stop="32914" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680">
            <donor d_prob="0.259" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34595" g_stop="34643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="121" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="230" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="324" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="622" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38471" g_stop="38655" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="807" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E719634" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32843" e_stop="32914"/>
          <exon e_start="34595" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGT</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAAAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAAACAGCACATTGATTCTACTTTAGGCAGCGAAAACTTGAAAGAGGCTGTAAGGCTTCCTCCTGGGGAAAATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAAATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAAAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAAAAGCCTATTGAAGTTTCTGCTCCAAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAAACAATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAAAAAATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262170" ref_strand="+" ref_description="SGN-E262170 [cLEG-58-B22]">
      <seq>atttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatngaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaantgagtatggtggtgataaaaatgtatttttaccattctataataagtatggtagtctaaaagtttgacattttaatatcattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="32581" stop="38978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32881" g_stop="32914" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680">
            <donor d_prob="0.259" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34595" g_stop="34643" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="83" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="192" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="286" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="420" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="584" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38471" g_stop="38678" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="797" r_length="213" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E262170" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32881" e_stop="32914"/>
          <exon e_start="34595" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAG-GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACT-AATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAA-TGAGTATGGT-GTGATAAAAATGTATTTTTACCATTCTATAATAAGTAT-GTAGTCTAAAAGTTTGACATTTTAATATCATTATTG</genome_strand>
        <mrna_strand>ATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................NGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAANTGAGTATGGTGGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGGTAGTCTAAAAGTTTGACATTTTAATATCATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398389" ref_strand="+" ref_description="SGN-E398389 [TUS-35-H9]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34296" stop="38794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34596" g_stop="34643" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38471" g_stop="38494" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="573" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E398389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34596" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAG</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395058" ref_strand="+" ref_description="SGN-E395058 [TUS-35-F7]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34296" stop="38793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34596" g_stop="34643" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38471" g_stop="38493" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="572" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E395058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34596" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395070" ref_strand="+" ref_description="SGN-E395070 [TUS-35-H11]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34296" stop="38793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34596" g_stop="34643" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38471" g_stop="38493" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="572" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E395070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34596" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395063" ref_strand="+" ref_description="SGN-E395063 [TUS-35-F13]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccctgaatttgggttgattgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34296" stop="38792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34596" g_stop="34643" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38471" g_stop="38492" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="571" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E395063" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34596" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCCT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398387" ref_strand="+" ref_description="SGN-E398387 [TUS-35-F5]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34296" stop="38398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34596" g_stop="34643" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E398387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34596" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395061" ref_strand="+" ref_description="SGN-E395061 [TUS-35-F11]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34296" stop="38325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34596" g_stop="34643" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38025" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="482" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E395061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34596" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275457" ref_strand="+" ref_description="SGN-E275457 [cLEN-10-L2]">
      <seq>atcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaattcgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgggccttactaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34297" stop="38850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34597" g_stop="34643" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="156" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="250" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="384" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="548" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38471" g_stop="38550" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="628" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E275457" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34597" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATC</genome_strand>
        <mrna_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTCGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGGGCCTTACTAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275458" ref_strand="+" ref_description="SGN-E275458 [cLEN-10-L4]">
      <seq>atcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="34297" stop="38393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34597" g_stop="34643" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35481" g_stop="35589" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="156" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="250" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="384" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="548" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E275458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34597" e_stop="34643"/>
          <exon e_start="35481" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</genome_strand>
        <mrna_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714657" ref_strand="+" ref_description="SGN-E714657 [FB12AC09]">
      <seq>ggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="35258" stop="38969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35558" g_stop="35589" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36717" g_stop="36810" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="126" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="260" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="424" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38471" g_stop="38666" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="620" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="630"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E714657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35558" e_stop="35589"/>
          <exon e_start="36717" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTA</genome_strand>
        <mrna_strand>GGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396381" ref_strand="+" ref_description="SGN-E396381 [TUS-35-H11](-)">
      <seq>ccaacaatgaccgcaggccccaagtatgagtataggtgggctgagggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatttcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattggcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="36488" stop="38988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36788" g_stop="36810" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37418" g_stop="37551" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="157" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37929" g_stop="38092" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="321" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38471" g_stop="38683" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="534" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="552"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E396381" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36788" e_stop="36810"/>
          <exon e_start="37418" e_stop="37551"/>
          <exon e_start="37929" e_stop="38092"/>
          <exon e_start="38471" e_stop="38683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</genome_strand>
        <mrna_strand>CCAACAATGACCGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGAGGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATTTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396380" ref_strand="+" ref_description="SGN-E396380 [TUS-35-H9](-)">
      <seq>tatatgcacatatttatcattcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgtttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattggcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="37692" stop="38988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37992" g_stop="38092" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38471" g_stop="38683" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="314" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="332"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E396380" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37992" e_stop="38092"/>
          <exon e_start="38471" e_stop="38683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</genome_strand>
        <mrna_strand>TATATGCACATATTTATCATTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGTTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395062" ref_strand="+" ref_description="SGN-E395062 [TUS-35-F13](-)">
      <seq>ccactccaagatttcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattgtgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="38204" stop="38988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38504" g_stop="38687" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="185" polyA_stop="199"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E395062" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38504" e_stop="38687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</genome_strand>
        <mrna_strand>CCACTCCAAGATTTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395057" ref_strand="+" ref_description="SGN-E395057 [TUS-35-F5](-)">
      <seq>cttattaatcatcttctttcagtttttgcttttaacttatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattgtgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="38238" stop="38988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38538" g_stop="38687" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="151" polyA_stop="165"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E395057" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>150</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38538" e_stop="38687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</genome_strand>
        <mrna_strand>CTTATTAATCATCTTCTTTCAGTTTTTGCTTTTAACTTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213236" ref_strand="+" ref_description="SGN-E213236 [cLEC-72-H6]">
      <seq>gaattgtggtccactacctggatatgttcgagctcatattgagagtggtggattcaatatttccccactcaaacctattaacgggaggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaaactttgctatgataaatcaaagattcctgctgggtaacctctgatgggatctgntgctgctgactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="47270" stop="49561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47570" g_stop="47613" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47614" i_stop="47754" i_length="141">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47755" g_stop="47910" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="200" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48642" g_stop="48871" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="430" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48962" g_stop="49001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="470" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49100" g_stop="49254" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="625" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49352" g_stop="49397" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="671" r_length="46" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E213236" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47570" e_stop="47613"/>
          <exon e_start="47755" e_stop="47910"/>
          <exon e_start="48642" e_stop="48871"/>
          <exon e_start="48962" e_stop="49001"/>
          <exon e_start="49100" e_stop="49254"/>
          <exon e_start="49352" e_stop="49397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGAGTAACCTCTATTTCCTTCCACTCATTTAGTTAGATGCTCTGAATACATATGAAAACCATAATTGATGATTCTCTATATATCTTTGGCAGAAGTACTCTGACGGTTTTATCTTAGATACTAACCAATTCTCACCACTCACAGGTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGT</genome_strand>
        <mrna_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA.............................................................................................................................................GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAAACTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGGTAACCTCTGATGGGATCTGNTGCTGCTGACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208601" ref_strand="+" ref_description="SGN-E208601 [cLEC-39-A15]">
      <seq>gaattgtggtccactacctggatatgttcgagctcatattgagagtggtggattcaatatttccccactcaaacctattaacgggaggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcaaatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccaattatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaattcgagctgcaaatagaaatgcttcaatgatggatgagtactctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="47270" stop="49139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47570" g_stop="47613" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47614" i_stop="47754" i_length="141">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47755" g_stop="47910" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="200" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731">
            <donor d_prob="0.751" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48642" g_stop="48839" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="398" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E208601" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47570" e_stop="47613"/>
          <exon e_start="47755" e_stop="47910"/>
          <exon e_start="48642" e_stop="48839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGAGTAACCTCTATTTCCTTCCACTCATTTAGTTAGATGCTCTGAATACATATGAAAACCATAATTGATGATTCTCTATATATCTTTGGCAGAAGTACTCTGACGGTTTTATCTTAGATACTAACCAATTCTCACCACTCACAGGTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATG</genome_strand>
        <mrna_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA.............................................................................................................................................GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAAATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAATTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATTCGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273486" ref_strand="+" ref_description="SGN-E273486 [cLEN-3-F10]">
      <seq>aggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="47496" stop="49702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47796" g_stop="47910" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48642" g_stop="48871" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="345" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48962" g_stop="49001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="385" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49100" g_stop="49254" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="540" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49352" g_stop="49402" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="591" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E273486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47796" e_stop="47910"/>
          <exon e_start="48642" e_stop="48871"/>
          <exon e_start="48962" e_stop="49001"/>
          <exon e_start="49100" e_stop="49254"/>
          <exon e_start="49352" e_stop="49402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAA</genome_strand>
        <mrna_strand>AGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329282" ref_strand="+" ref_description="SGN-E329282 [cTOD-2-E15]">
      <seq>caacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="47514" stop="49728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47814" g_stop="47910" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48642" g_stop="48871" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="327" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48962" g_stop="49001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="367" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49100" g_stop="49254" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="522" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49352" g_stop="49428" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="599" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E329282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47814" e_stop="47910"/>
          <exon e_start="48642" e_stop="48871"/>
          <exon e_start="48962" e_stop="49001"/>
          <exon e_start="49100" e_stop="49254"/>
          <exon e_start="49352" e_stop="49428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGC</genome_strand>
        <mrna_strand>CAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550786" ref_strand="+" ref_description="SGN-E550786 [TUS-50-K7]">
      <seq>atcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaagatacaaaacgaatggaccatgttgctagacgtcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="47529" stop="49741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47829" g_stop="47910" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48642" g_stop="48871" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="312" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48962" g_stop="49001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="352" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49100" g_stop="49254" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="507" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49352" g_stop="49441" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="596" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E550786" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47829" e_stop="47910"/>
          <exon e_start="48642" e_stop="48871"/>
          <exon e_start="48962" e_stop="49001"/>
          <exon e_start="49100" e_stop="49254"/>
          <exon e_start="49352" e_stop="49441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</genome_strand>
        <mrna_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTT-AAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688471" ref_strand="+" ref_description="SGN-E688471 [t3_tus_50_k07]">
      <seq>atcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaagatacaaaacgaatggaccatgttgctagacgtcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="47529" stop="49741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47829" g_stop="47910" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48642" g_stop="48871" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="312" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48962" g_stop="49001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="352" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49100" g_stop="49254" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="507" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49352" g_stop="49441" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="596" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E688471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47829" e_stop="47910"/>
          <exon e_start="48642" e_stop="48871"/>
          <exon e_start="48962" e_stop="49001"/>
          <exon e_start="49100" e_stop="49254"/>
          <exon e_start="49352" e_stop="49441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</genome_strand>
        <mrna_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTT-AAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209275" ref_strand="+" ref_description="SGN-E209275 [cLEC-53-O14]">
      <seq>tccgcttcaggctcttctaagaggaatcataaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaaccttcggatcaaatagattttcccatcttttggggggaccttcgacgtgatgaccgccataatggtcgaaactgctggagaatatctgatggaaataacttcagagttcggtgcacgaactttggctatgataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="48416" stop="49550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48716" g_stop="48871" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48962" g_stop="49001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="196" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49100" g_stop="49250" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="347" r_length="151" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E209275" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48716" e_stop="48871"/>
          <exon e_start="48962" e_stop="49001"/>
          <exon e_start="49100" e_stop="49250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATC</genome_strand>
        <mrna_strand>TCCGCTTCAGGCTCTTCTAAGAGGAATCATAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTCGGATCAAATAGATTTTCCCATCTTTTGGGGGGACCTTCGACGTGATGACCGCCATAATGGTCGAAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGGTGCACGAACTTTGGCTATGATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377138" ref_strand="+" ref_description="SGN-E377138 [TUS-21-G3]">
      <seq>agaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttttcttgtacagggaaactctcccgatgagttgcctgagcaactaataggcgctgtacgtgcatctcatatagaactctcagctgctgttgtaccaaaattggagcctgatactacagagtaggtcaaaccacacacatagttcaccttcttcagaagttgattcttgaaacatacgtatacatagatgtagttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="48892" stop="54508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49192" g_stop="49254" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49352" g_stop="49453" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49454" i_stop="50368" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50369" g_stop="50413" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50414" i_stop="50502" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50503" g_stop="50643" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="351" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50644" i_stop="51379" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51380" g_stop="51475" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="447" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51476" i_stop="51565" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51566" g_stop="51667" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="549" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51668" i_stop="54022" i_length="2355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54023" g_stop="54208" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="735" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E377138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49192" e_stop="49254"/>
          <exon e_start="49352" e_stop="49453"/>
          <exon e_start="50369" e_stop="50413"/>
          <exon e_start="50503" e_stop="50643"/>
          <exon e_start="51380" e_stop="51475"/>
          <exon e_start="51566" e_stop="51667"/>
          <exon e_start="54023" e_stop="54208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAGGTATGTGAATGGACCTTCACCTGCAAGATTTTTTTTTCTTGTTGATATATTTATCTGTACAGTTTGTTGAACTCTGTCAAAGTATGTTGGGTCCAACTATCTTGGAATGTTGGAATAATTTTGAGTTATATAGGTACAAGTATGAGATACGTCTTCTGTCCCATTTTATATTGCTCCATTATTATTTGGAGAAGTCAAAAATGTTTTGCATTGTACGATTTTTAAATACAGTAATAGAAAATTGTGACTTGTAATGCTTTCTATGTAGTTCTTGATTATGTATAAATTCATTTTAAAAACTAAGGAATTGATGTTCGAATAGAGACCTAAAGTCAGATGACTACTCCTCATACTTCTGGTCCTATCATTCATTTTGGGATGAGAAAGTAACAAAATGAATTAATGAAGTTAGTCTAATACTCTAATACATAAAACTTGAAAGTCGGATGTTTTCCGGTATAGACTTGTAAGTTGGATAGCTGGACTCCCATTTAAGTTACCATAAAGCCAGAAATTGATAACTAGATAGATAACAACAACATACACAATTTAAGTGGGGTCTGGGAACGGCAATGAGTACACAGCCTACCATACCTTTGTGAAGGTAGAGAGGTTGTTCCCGATAGACCTTCGGCTCAAGAAAAGGAAATATGGTAGTGAAGAAGTCATGTAGAAATAATAAAGAAAATCTTTACGTAAATTGCAGAGAATTTCCTGACTCAACCAAAAAGCTAGAAAAAGATTTCCTGATAAGAACATAGTAGTACACACCTTTGAATTGAGAAAAAAAGAAAAGGAGGCAGTAGCAACAAGAACAGAGCATCATTATAGTTTTATATTATACTCCCATAATACCTAATTAAATATTAACATTTCTCTGTTTGGTATATCCCAAAATAAGTATTCACTTTCTTAAAAAACAGATATCTATTCAAATATTATATGCGGAAGAAATTATGCACGGGGTACTTTTACACTTTTTGATAAACTTTTTTCCCTTGTAAACAATCTAAAAGTAGTGGCAAGGAACTTAATACTTACTCTTAGTGATAGTCAAAGCAAAACATTGATTTGAAGCAGATGGTTTAATAGGACAATCTCTCCTTCTTTTTCTATAATGATGCCATGGTGTTCGGATCTGCATGCACCTAGACTATTCTACTGGATACTTCTCATCTCCTAAGTCCCACCAACCTAGTTGCTCAGACTCTTCACTTTTGATGCCGCACCCATGTCGACAAGACGTGGGTGTAAGTGTGGGATACGTGTCCGATTTGGTCAACCGATTATGGGTACTTTGACCAAAATCGACGGGAAAAGTCTGGATAGTTTTTATGATTTCTGTAGTCAATACAGAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTCTATATAGAATTTTTTTTTTATGACAAGGGAAACTGCACCCGTATCCATTCATGGATACTTATCCCCGAATCTTAAAAATTAGATCATGAAGGATCCGACTTCCAAATCCGCACCCCTATCGGACACCCCCACCCGAGTCAGAGCAACTTAGCATCACCAACATAGGGACTAGGTAACTTTGCCCATCAAGGTTTTGTTGATATGAAATCTTTGTTCAAGAATATGGAAATCATGGGAAAACATAAGGAAGATAGGTGGACCATTCATTTCGGTAGGATGGAAATTAATCAACTGTACGATGCTTGATCTTCCAGTGATGGTTTCATCTCACTGCATAGAATATAGAAAGTTTTTCAATGTGGAGTGATTTCTTTATTGGAATGAAATCGTCACAGTGTCAAAAAAGCATTCAGGTTTACAGATAAGGCCTCTAGAACCATTTCACTCACCGCTCAAGTAATTCTCCACAAACACTATACAATATCTTGAACTTTAAGAATATTTAGCAGTGCCTGCATCGTTGTATGTAAAGTGGATTACAGTGCCAAATAAACTATCAAAAGGAAGCATTTGAATTACTAGAGCCTAGAGGGAAATAAAAAAGGGAACTCTTATCTGCTTAGTAATGAAGATGAATTAAAGGAGATATCCCAGTGTACTATTTTAGTTTGGTCATTGTATTTTCAGTGTATGTTCATGATTTTTTTGTAAACATTCATTTCTAGTCGAAAATTTCTGTAATAATAAAACTATATCCCCGCCATCCCCTATGCATCCTCCCTCCCTAATGACAAAAAGAAGATGAAATTGATTCGAAATGATGTGTTTGACATTTTCTTTCTCGAAGTCATGCAAATGTGTTATCCATCTTTTCTCTAAAAACTTCCTTACTAATTGTTACCTCTCAACGAGGTTGCTATGTATATGCTGAATCTGATAATGTCATTCGCTAATTTGTGTTAGGGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTT</genome_strand>
        <mrna_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231152" ref_strand="+" ref_description="SGN-E231152 [cLED-5-M15]">
      <seq>agaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="48892" stop="51957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49192" g_stop="49254" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49352" g_stop="49453" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49454" i_stop="50368" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50369" g_stop="50413" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50414" i_stop="50502" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50503" g_stop="50643" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="351" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50644" i_stop="51379" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51380" g_stop="51475" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="447" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51476" i_stop="51565" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51566" g_stop="51657" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="539" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E231152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49192" e_stop="49254"/>
          <exon e_start="49352" e_stop="49453"/>
          <exon e_start="50369" e_stop="50413"/>
          <exon e_start="50503" e_stop="50643"/>
          <exon e_start="51380" e_stop="51475"/>
          <exon e_start="51566" e_stop="51657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTT</genome_strand>
        <mrna_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236480" ref_strand="+" ref_description="SGN-E236480 [cLED-13-H10]">
      <seq>agaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="48892" stop="51772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49192" g_stop="49254" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49352" g_stop="49453" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49454" i_stop="50368" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50369" g_stop="50413" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50414" i_stop="50502" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50503" g_stop="50643" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="351" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50644" i_stop="51379" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51380" g_stop="51472" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="444" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E236480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49192" e_stop="49254"/>
          <exon e_start="49352" e_stop="49453"/>
          <exon e_start="50369" e_stop="50413"/>
          <exon e_start="50503" e_stop="50643"/>
          <exon e_start="51380" e_stop="51472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTG</genome_strand>
        <mrna_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698884" ref_strand="+" ref_description="SGN-E698884 [FA07DE12]">
      <seq>ttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatattcgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttttcttgtacagggaaactctcccgatgagttgcctgagcaactaataggcgctgtacgtgcatctcatatagaactctcagctgctgttgtaccaaaattggagcctgatactacagagtaggtcaaaccacacacatagttcaccttcttcagaagttgattcttgaaacatacgtatacatagatgtagttcctttctattttcgttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="48936" stop="54524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49236" g_stop="49254" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97">
            <donor d_prob="0.703" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49352" g_stop="49453" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="121" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49454" i_stop="50368" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50369" g_stop="50413" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="166" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50414" i_stop="50502" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50503" g_stop="50643" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="307" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50644" i_stop="51379" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51380" g_stop="51475" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="403" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51476" i_stop="51565" i_length="90">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51566" g_stop="51667" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="505" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51668" i_stop="54022" i_length="2355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54023" g_stop="54224" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="707" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E698884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49236" e_stop="49254"/>
          <exon e_start="49352" e_stop="49453"/>
          <exon e_start="50369" e_stop="50413"/>
          <exon e_start="50503" e_stop="50643"/>
          <exon e_start="51380" e_stop="51475"/>
          <exon e_start="51566" e_stop="51667"/>
          <exon e_start="54023" e_stop="54224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAGGTATGTGAATGGACCTTCACCTGCAAGATTTTTTTTTCTTGTTGATATATTTATCTGTACAGTTTGTTGAACTCTGTCAAAGTATGTTGGGTCCAACTATCTTGGAATGTTGGAATAATTTTGAGTTATATAGGTACAAGTATGAGATACGTCTTCTGTCCCATTTTATATTGCTCCATTATTATTTGGAGAAGTCAAAAATGTTTTGCATTGTACGATTTTTAAATACAGTAATAGAAAATTGTGACTTGTAATGCTTTCTATGTAGTTCTTGATTATGTATAAATTCATTTTAAAAACTAAGGAATTGATGTTCGAATAGAGACCTAAAGTCAGATGACTACTCCTCATACTTCTGGTCCTATCATTCATTTTGGGATGAGAAAGTAACAAAATGAATTAATGAAGTTAGTCTAATACTCTAATACATAAAACTTGAAAGTCGGATGTTTTCCGGTATAGACTTGTAAGTTGGATAGCTGGACTCCCATTTAAGTTACCATAAAGCCAGAAATTGATAACTAGATAGATAACAACAACATACACAATTTAAGTGGGGTCTGGGAACGGCAATGAGTACACAGCCTACCATACCTTTGTGAAGGTAGAGAGGTTGTTCCCGATAGACCTTCGGCTCAAGAAAAGGAAATATGGTAGTGAAGAAGTCATGTAGAAATAATAAAGAAAATCTTTACGTAAATTGCAGAGAATTTCCTGACTCAACCAAAAAGCTAGAAAAAGATTTCCTGATAAGAACATAGTAGTACACACCTTTGAATTGAGAAAAAAAGAAAAGGAGGCAGTAGCAACAAGAACAGAGCATCATTATAGTTTTATATTATACTCCCATAATACCTAATTAAATATTAACATTTCTCTGTTTGGTATATCCCAAAATAAGTATTCACTTTCTTAAAAAACAGATATCTATTCAAATATTATATGCGGAAGAAATTATGCACGGGGTACTTTTACACTTTTTGATAAACTTTTTTCCCTTGTAAACAATCTAAAAGTAGTGGCAAGGAACTTAATACTTACTCTTAGTGATAGTCAAAGCAAAACATTGATTTGAAGCAGATGGTTTAATAGGACAATCTCTCCTTCTTTTTCTATAATGATGCCATGGTGTTCGGATCTGCATGCACCTAGACTATTCTACTGGATACTTCTCATCTCCTAAGTCCCACCAACCTAGTTGCTCAGACTCTTCACTTTTGATGCCGCACCCATGTCGACAAGACGTGGGTGTAAGTGTGGGATACGTGTCCGATTTGGTCAACCGATTATGGGTACTTTGACCAAAATCGACGGGAAAAGTCTGGATAGTTTTTATGATTTCTGTAGTCAATACAGAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTCTATATAGAATTTTTTTTTTATGACAAGGGAAACTGCACCCGTATCCATTCATGGATACTTATCCCCGAATCTTAAAAATTAGATCATGAAGGATCCGACTTCCAAATCCGCACCCCTATCGGACACCCCCACCCGAGTCAGAGCAACTTAGCATCACCAACATAGGGACTAGGTAACTTTGCCCATCAAGGTTTTGTTGATATGAAATCTTTGTTCAAGAATATGGAAATCATGGGAAAACATAAGGAAGATAGGTGGACCATTCATTTCGGTAGGATGGAAATTAATCAACTGTACGATGCTTGATCTTCCAGTGATGGTTTCATCTCACTGCATAGAATATAGAAAGTTTTTCAATGTGGAGTGATTTCTTTATTGGAATGAAATCGTCACAGTGTCAAAAAAGCATTCAGGTTTACAGATAAGGCCTCTAGAACCATTTCACTCACCGCTCAAGTAATTCTCCACAAACACTATACAATATCTTGAACTTTAAGAATATTTAGCAGTGCCTGCATCGTTGTATGTAAAGTGGATTACAGTGCCAAATAAACTATCAAAAGGAAGCATTTGAATTACTAGAGCCTAGAGGGAAATAAAAAAGGGAACTCTTATCTGCTTAGTAATGAAGATGAATTAAAGGAGATATCCCAGTGTACTATTTTAGTTTGGTCATTGTATTTTCAGTGTATGTTCATGATTTTTTTGTAAACATTCATTTCTAGTCGAAAATTTCTGTAATAATAAAACTATATCCCCGCCATCCCCTATGCATCCTCCCTCCCTAATGACAAAAAGAAGATGAAATTGATTCGAAATGATGTGTTTGACATTTTCTTTCTCGAAGTCATGCAAATGTGTTATCCATCTTTTCTCTAAAAACTTCCTTACTAATTGTTACCTCTCAACGAGGTTGCTATGTATATGCTGAATCTGATAATGTCATTCGCTAATTTGTGTTAGGGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</genome_strand>
        <mrna_strand>TTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATTCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729756" ref_strand="+" ref_description="SGN-E729756 [LA22AA07]">
      <seq>cccaaaattttcattttccccctctcccttccctccattctctctctctgtctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtgtctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="55375" stop="63702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55675" g_stop="55881" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56204" g_stop="56236" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="240" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57891" g_stop="58119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="469" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58642" g_stop="58774" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="602" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63199" g_stop="63402" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="806" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E729756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55675" e_stop="55881"/>
          <exon e_start="56204" e_stop="56236"/>
          <exon e_start="57891" e_stop="58119"/>
          <exon e_start="58642" e_stop="58774"/>
          <exon e_start="63199" e_stop="63402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCT</genome_strand>
        <mrna_strand>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG..................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706475" ref_strand="+" ref_description="SGN-E706475 [FA30AC07]">
      <seq>ccctccattctctctctctgtctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtgtctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="55405" stop="63820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55705" g_stop="55881" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56204" g_stop="56236" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="210" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57891" g_stop="58119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="439" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58642" g_stop="58774" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="572" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63199" g_stop="63520" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="894" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E706475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55705" e_stop="55881"/>
          <exon e_start="56204" e_stop="56236"/>
          <exon e_start="57891" e_stop="58119"/>
          <exon e_start="58642" e_stop="58774"/>
          <exon e_start="63199" e_stop="63520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGT</genome_strand>
        <mrna_strand>CCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG..................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691355" ref_strand="+" ref_description="SGN-E691355 [LH_Ea05O09]">
      <seq>cattatggctctctctctaagctttctctctctaaactttctcttctcatcagcaaagccatttctgtatctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggaataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggcacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="55410" stop="63743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55710" g_stop="55881" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56204" g_stop="56236" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="206" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57891" g_stop="58119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="435" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58642" g_stop="58774" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="568" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63199" g_stop="63443" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="813" r_length="245" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E691355" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55710" e_stop="55881"/>
          <exon e_start="56204" e_stop="56236"/>
          <exon e_start="57891" e_stop="58119"/>
          <exon e_start="58642" e_stop="58774"/>
          <exon e_start="63199" e_stop="63443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTC-TCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTG</genome_strand>
        <mrna_strand>CATTATGGCTCTCTCTCTAAGCTTTCTCTCTCTAAACTTTCTCTTCTCATCAGCAAAGCCATTTCTGTATCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG..................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGAATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691356" ref_strand="+" ref_description="SGN-E691356 [LH_Ea05O10]">
      <seq>ttctctctctctctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtatctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggaataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggcacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="55415" stop="63786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55714" g_stop="55881" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56204" g_stop="56236" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="201" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57891" g_stop="58119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="430" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58642" g_stop="58774" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="563" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63199" g_stop="63486" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="851" r_length="288" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E691356" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55714" e_stop="55881"/>
          <exon e_start="56204" e_stop="56236"/>
          <exon e_start="57891" e_stop="58119"/>
          <exon e_start="58642" e_stop="58774"/>
          <exon e_start="63199" e_stop="63486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTAT</genome_strand>
        <mrna_strand>TTCTCTCTCTCTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTATCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG..................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGAATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538028" ref_strand="+" ref_description="SGN-E538028 [TUS-56-O23]">
      <seq>tgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagaagacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="55483" stop="63822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55783" g_stop="55881" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56204" g_stop="56236" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="132" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57891" g_stop="58119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="361" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58642" g_stop="58774" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="494" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63199" g_stop="63522" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="818" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E538028" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55783" e_stop="55881"/>
          <exon e_start="56204" e_stop="56236"/>
          <exon e_start="57891" e_stop="58119"/>
          <exon e_start="58642" e_stop="58774"/>
          <exon e_start="63199" e_stop="63522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTA</genome_strand>
        <mrna_strand>TGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG..................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAAGACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267860" ref_strand="+" ref_description="SGN-E267860 [cLEI-12-K16]">
      <seq>gatggatggagctcatcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagcgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaactatccccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgacgccttttatttcggcgctagatttgggtttgatagagctgatacgagaaggttgttcaatatgataaatgatctccctacaattctcgaggttgagtctgggacagccaagagacattcaaaagacaagtcatcaatgtcaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="55484" stop="59043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55784" g_stop="55881" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56204" g_stop="56236" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="131" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57891" g_stop="58119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="360" r_length="229" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58642" g_stop="58743" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="462" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E267860" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55784" e_stop="55881"/>
          <exon e_start="56204" e_stop="56236"/>
          <exon e_start="57891" e_stop="58119"/>
          <exon e_start="58642" e_stop="58743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCA</genome_strand>
        <mrna_strand>GATGGATGGAGCTCATCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG..................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGCGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTATCCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGACGCCTTTTATTTCGGCGCTAGATTTGGGTTTGATAGAGCTGATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTCTCGAGGTTGAGTCTGGGACAGCCAAGAGACATTCAAAAGACAAGTCATCAATGTCAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695195" ref_strand="+" ref_description="SGN-E695195 [LH_Ea05O09](-)">
      <seq>aaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttattgaggtccatcctttgtgaagtcatgaaagatctttttgcggtatgagaagtggatttcttatgggaagctctttgatgccatatgttctattctacattacaattatctattatctagttgcaagaatgttgttgtctagtgtctttttctagtatgtcgtgctgtgaatgatgtaggttgccactctaaattagtcgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctggactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaatcttttgtttcctgtggcctgcaatttcttttgttccctctcccctcttatttgattcattctgaagtagctgatacagttcagtgcacgaagcatcttgtgtttacgtgggttcgggaaaggactgtatgcaagggatataatgtggttagtacatcttaattcttgaagtaacaagtctagctgtgtatttgattaagctatttcaagggcctatatcttttttggttttctttctcatgtgcttgattggtttgaagtttaactaatttggatttacgcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="62950" stop="64408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63250" g_stop="64108" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64109" i_stop="64251" i_length="143">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64252" g_stop="64262" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="866" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E695195" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63250" e_stop="64108"/>
          <exon e_start="64252" e_stop="64262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGC-----ATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTA-TT-----GCCTATATATTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAAGTTCCACTTTGGAGGGTAAATTAAGTGTATGGTGACTCCATATCTGAACTCGAATGTAAGACTCCTTTCGATTTTACCATAACCTTTGGTGTAATGAATACCTTGCAATCAAATTTTGCTCTTTTCTCTTTTTGTTTTCGTAGAAGGAAAATAT</genome_strand>
        <mrna_strand>AAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTATTGAGGTCCATCCTTTGTGAAGTCATG---A-----AAGATCTTTTTGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTTGATGCCATATGTTCTATTCTACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGTGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCACTCTAAATTAGTC---GTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGGACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTCTTTTGTT-CC-CT-CTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTTGTGTTTACGTGGGTTCGGGAAAGGACTGTATGCAAGGGATATAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTAAGCTATTTCAAGGGCCTATATCTTTTTTGGTTTTCTTTCTCATGTGCT-TGATTGGTTTGAAGTTTAACTAATTTGGATTTACGCTTAAAA...............................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695196" ref_strand="+" ref_description="SGN-E695196 [LH_Ea05O10](-)">
      <seq>aaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttattgaggtccatcctttgtgaagtcatgaaagatctttttgcggtatgagaagtggatttcttatgggaagctctttgatgccatatgttctattctacattacaattatctattatctagttgcaagaatgttgttgtctagtgtctttttctagtatgtcgtgctgtgaatgatgtaggttgccactctaaattagtcgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctggactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaatcttttgtttcctgtggcctgcaatttcttttgttccctctcccctcttatttgattcattctgaagtagctgatacagttcagtgcacgaagcatcttgtgtttacgtgggttcgggaaaggactgtatgcaagggatataatgtggttagtacatcttaattcttgaagtaacaagtctagctgtgtatttgattaagctattgcataggcctatatcttttttggttttctttctcatgtgtcgtgattgtttgaagtttaactaatttggatttacgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="62950" stop="64408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63250" g_stop="64108" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64109" i_stop="64251" i_length="143">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64252" g_stop="64261" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="865" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E695196" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63250" e_stop="64108"/>
          <exon e_start="64252" e_stop="64261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGC-----ATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTATTGCCTA----TATA--TTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAAGTTCCACTTTGGAGGGTAAATTAAGTGTATGGTGACTCCATATCTGAACTCGAATGTAAGACTCCTTTCGATTTTACCATAACCTTTGGTGTAATGAATACCTTGCAATCAAATTTTGCTCTTTTCTCTTTTTGTTTTCGTAGAAGGAAAATA</genome_strand>
        <mrna_strand>AAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTATTGAGGTCCATCCTTTGTGAAGTCATG---A-----AAGATCTTTTTGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTTGATGCCATATGTTCTATTCTACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGTGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCACTCTAAATTAGTC---GTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGGACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTCTTTTGTT-CC-CT-CTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTTGTGTTTACGTGGGTTCGGGAAAGGACTGTATGCAAGGGATATAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTAAGCTATTGCATAGGCCTATATCTTTTTTGGTTTTCTTTCTCATGTGTCGTGATTG-TTTGAAGTTTAACTAATTTGGATTTACGCTAAAAA...............................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217330" ref_strand="+" ref_description="SGN-E217330 [cLEL-21-L10](-)">
      <seq>actatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatggaaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgttaagatcttttcgcggtatgagaagtggatttcttatgggaagctcttcgatgccatatgttctattcaacattacaattatctattatctagttgcaagaatgttgttgtctagcgtctttttctagtatgtcgtgctgtgaatgatgtaggttgcctctctaaattagtcgttgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctgcactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="63023" stop="64111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63323" g_stop="63811" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="509"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E217330" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63323" e_stop="63811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCC</genome_strand>
        <mrna_strand>ACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGAAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319672" ref_strand="+" ref_description="SGN-E319672 [cTOB-12-P15]">
      <seq>gtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgttaagatcttttcgcggtatgagaagtggatttcttatgggaagctcttcgatgccatatgttctattcaacattacaattatctattatctagttgcaagaatgttgttgtctagcgtctttttctagtatgtcgtgctgtgaatgatgtaggttgcctctctaaattagtcgttgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctgcactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="63126" stop="64127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63426" g_stop="63826" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="413"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E319672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63426" e_stop="63826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCA</genome_strand>
        <mrna_strand>GTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698318" ref_strand="+" ref_description="SGN-E698318 [FA05DG05]">
      <seq>ccccttcatcatctgtgcctgaagagagcagaagtgaagggactatgtcgcttgatgtgatatctgaaaatgaaagcaactggattgctggtgatgctgttgttagggaaagtgaggatgatgattccttatcactggagggtgatcaaattctcgataattcgtgttccctgtcagtggtgagcgattgtagtagtttatgcgctgatgattttataggctttgagatagcgtctgacatagaaggtcaggatttcgtggattctcagaaaagcatcagccatgatgaacttattggtaagactggggttttggttgagtcagatgttgaggatactttgattagacccgcggcagttcctgagagacttgaggagcagatcactgataaagatttgaatgcaacagtcagccgcagtgtttttgaagtggactacatacccttatggggatatacatctatctgtggaaggagaccagaaatggaagacgcattcgcaactgttcctagattcatgaaaattcctctaccgatgttaattggtgatcgcgtgcttgatggactgtctagacgcttgagtcatttgacgactcatttctttggagtttatgatggccatggtggttctcaggtggcaaattactgccgagaccggattcatgctgtattggctgaggagttggaaacttttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="74519" stop="75903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74813" g_stop="75444" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75445" i_stop="75539" i_length="95">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75540" g_stop="75603" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="696" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E698318" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74813" e_stop="75444"/>
          <exon e_start="75540" e_stop="75603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAGGTCTCTGTCTCTCTTTCTGACTTTGGTTCATCCAATTCCTTGTTACCTAAATATGAACAAAAATTAATTGATTCCTTTTTTTTTGTCTCTTTCAGGTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</genome_strand>
        <mrna_strand>CCCCTTCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG...............................................................................................GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363520" ref_strand="+" ref_description="SGN-E363520 [cLPP-4-B18]">
      <seq>tcaaacgtgaaagaaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaannntgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78138" stop="80268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78438" g_stop="78715" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79968" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="354" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E363520" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78438" e_stop="78715"/>
          <exon e_start="79892" e_stop="79968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCA</genome_strand>
        <mrna_strand>TCAAACGTGAAAGAAAAACTAAGAA-TTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAANNNTGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330344" ref_strand="+" ref_description="SGN-E330344 [cTOD-4-P10]">
      <seq>aaacgtgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggtttaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctaggtcaagtaactctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78140" stop="81116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78440" g_stop="78715" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="362" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79978" i_stop="80427" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80428" g_stop="80549" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="484" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80550" i_stop="80627" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80628" g_stop="80816" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="673" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E330344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78440" e_stop="78715"/>
          <exon e_start="79892" e_stop="79977"/>
          <exon e_start="80428" e_stop="80549"/>
          <exon e_start="80628" e_stop="80816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</genome_strand>
        <mrna_strand>AAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334361" ref_strand="+" ref_description="SGN-E334361 [cTOD-21-L5]">
      <seq>tgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggtttaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctangtcaagtaactctggatcagaagattcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78145" stop="81128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78445" g_stop="78715" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="357" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79978" i_stop="80427" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80428" g_stop="80549" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="479" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80550" i_stop="80627" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80628" g_stop="80828" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="680" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E334361" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78445" e_stop="78715"/>
          <exon e_start="79892" e_stop="79977"/>
          <exon e_start="80428" e_stop="80549"/>
          <exon e_start="80628" e_stop="80828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATCAGAAGATTCAAT</genome_strand>
        <mrna_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTANGTCAAGTAACTCTGGATCAGAAGATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334235" ref_strand="+" ref_description="SGN-E334235 [cTOD-21-L4]">
      <seq>tgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggtttaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctangtcaagtaactctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78145" stop="81116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78445" g_stop="78715" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="357" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79978" i_stop="80427" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80428" g_stop="80549" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="479" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80550" i_stop="80627" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80628" g_stop="80816" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="668" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E334235" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78445" e_stop="78715"/>
          <exon e_start="79892" e_stop="79977"/>
          <exon e_start="80428" e_stop="80549"/>
          <exon e_start="80628" e_stop="80816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</genome_strand>
        <mrna_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTANGTCAAGTAACTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364341" ref_strand="+" ref_description="SGN-E364341 [cLPP-20-N2]">
      <seq>aaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgttaccaacattgttcttggtgcatcgtctagaagtgctcttggcaggaaatattggactcatgatgtgccaacattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78151" stop="80960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78451" g_stop="78715" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="350" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79978" i_stop="80427" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80428" g_stop="80549" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="472" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80550" i_stop="80627" i_length="78">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80628" g_stop="80660" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="505" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E364341" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78451" e_stop="78715"/>
          <exon e_start="79892" e_stop="79977"/>
          <exon e_start="80428" e_stop="80549"/>
          <exon e_start="80628" e_stop="80660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGT</genome_strand>
        <mrna_strand>AAAAACTAAGAATTTTT-TTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTTACCAACATTGTTCTTGGTGCATCGTCTAGAAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361486" ref_strand="+" ref_description="SGN-E361486 [cLPP-6-I11]">
      <seq>aaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggccaaaaattcaccaaagcgtagctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaagggttattgcagatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78151" stop="80802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78451" g_stop="78719" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78720" i_stop="79891" i_length="1172">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79977" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="354" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79978" i_stop="80417" i_length="440">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80418" g_stop="80502" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="439" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E361486" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78451" e_stop="78719"/>
          <exon e_start="79892" e_stop="79977"/>
          <exon e_start="80418" e_stop="80502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</genome_strand>
        <mrna_strand>AAAAACTAAGAATTTTT-TTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGCCAAAAATTCACCAAAGCGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361275" ref_strand="+" ref_description="SGN-E361275 [cLPP-15-C19]">
      <seq>aaaggggcggatcttattaacggtagcctccttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataaaaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaattcttgtattggttcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggattaagtgattaagctactcaaaatgtcttgacacctttcaaggcttattctgcacgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="78193" stop="80276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78493" g_stop="78715" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79892" g_stop="79976" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="308" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E361275" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78493" e_stop="78715"/>
          <exon e_start="79892" e_stop="79976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAG</genome_strand>
        <mrna_strand>AAAGGGGCGGATCTTATTAACGGTAGCCTCCTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAAAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATTCTTGTATTGGTTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATTAAGCTACTCAAAATGTCTTGACACCTTTCAAGGCTTATTCTGCACGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330684" ref_strand="+" ref_description="SGN-E330684 [cTOD-8-M1]">
      <seq>ttgcaaagaagcggtcgtggccaaccaagcggctgatgagcttaataaatggaaaattgaagaagctcgcaagttcgaacaagcgcgttttgctgaagaggcggctcttgcaattgctgagaccgaaaaggcgaaatgcagagctgctatcgaagctgctaagaaagcacaaaagatggctgaaatagaagcgcaaagaaggaagtatgcagagttgaaagctaagcgagaggcagaaaaaaagaaacaagcaattaatgttcgatctcagaatgatatacgttataggaagtatacaatagaagagattgaggcagccaccaaaaagttctcaaatgcacaaaaaattggagaaggtggatatggacctgtttttaagggtaaactagatcacacacctgttgccattaaagttctgagtcctgatgctgcacaagggaagaaacagttccaacaagaggttgaggtcctcagtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="81676" stop="83633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81976" g_stop="82006" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82007" i_stop="82478" i_length="472">
            <donor d_prob="0.229" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82479" g_stop="82907" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="460" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82908" i_stop="83313" i_length="406">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83314" g_stop="83333" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="480" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E330684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81976" e_stop="82006"/>
          <exon e_start="82479" e_stop="82907"/>
          <exon e_start="83314" e_stop="83333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCGGTAATAGCCCATTTTCTAACTGCCTAGAACCATAAAGATGAACACCATCTAAAACAGCAAAAAAGAGAGAAATTTATGGGCCCAACTATCTGAAATGTATTAAGCAAATCATAATTTCAAGAAACCTTGTTTTATAGTTCAATGATTTAAAAGATATTATAAGGGAACTCATGTGTCTACAAATTTTATCCATGCGTAGAACGAAGCGGCTCCCAACTCCCAAAACTACATGAATGCATTCTGCATTTTTATGGGAAGTTATTCCTCCAAGGAATATATAAGGTCTGAAATAATTGTTATTAGTTAGTACAATTCTCATCTATATGTGAGTAAGAAATAGCATTGCATCAGTTGTTTACGTTTCTGAAAAACAAGTTACAAATTTATGACATCAAGCTTAAGGACCAAGGCTTTCTCCCTCTTCTTATCCAGGAGTAAGTTTTTCATGTGTCATATTTCTACTGAGTTTCAGGCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAGGTAACCGTTTTTATTACTAATTCAATGATAGCCTCTCTTTTACAATATGTATTTAAGATATGAAACATTCTGCATTATGAGGGCTGAACAACTTCATTTTCCGTAGAATTTGTGCATTCATTGAGTCACTTCTGGAGTTAATTACACGCTATGCAATTGAGGGAATTTATGATAAATTGTAGAAAGTGGAAAATGCATTTATACTGATGATTTATTAATGTAAATGGGACATATTTTAACTTGCTATAACTAGAATGTCTAAAAGATGTTGTAGCTTGTACTCTCTCATCTATGCTACACTATTATTAGAATCCCTCTCTCTTAGTTAAATTGTTGATTGGTGTTAGTATGAGTATTTGACAAGCCGCTTACTGATGCACATGAAAAATGTTTTTTTCATTTACAGGTTGAGGTCCTCAGTCTCAT</genome_strand>
        <mrna_strand>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGTCCTCAGTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721884" ref_strand="+" ref_description="SGN-E721884 [FC15CD02]">
      <seq>gggcgattggcggccaatcggccgaattgctcaactccgcggcgccgatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86698" stop="90992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87001" g_stop="87110" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="139" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="200" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="307" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="738" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90692" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="884" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E721884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87001" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGA</genome_strand>
        <mrna_strand>CTCAACTCCGCGGCGCCGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721163" ref_strand="+" ref_description="SGN-E721163 [FC12DH06]">
      <seq>aatcggccgaattgaactccgcggcgtagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcaaatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcaaagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86702" stop="90948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87007" g_stop="87110" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="121" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="182" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="289" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="720" r_length="431" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90648" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="822" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E721163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87007" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAAC</genome_strand>
        <mrna_strand>TCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAAATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAAAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719473" ref_strand="+" ref_description="SGN-E719473 [FC07DH09]">
      <seq>gggcgattggcggccaaatcggccgaattaactccgcggcgtagctctaaggagtttttgtaaaactgcagtctttgaaaaccctacttctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86702" stop="90944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87007" g_stop="87110" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="136" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="197" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="304" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="735" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90644" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="833" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E719473" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87007" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCAT</genome_strand>
        <mrna_strand>TCCGCGGCGTAGCTCTAAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTACTTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313244" ref_strand="+" ref_description="SGN-E313244 [cTOA-18-C16]">
      <seq>gtagatccgaggagtttttgtaaaactgcagtctttggaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaagggtctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86715" stop="89186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87015" g_stop="87110" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="264" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="88980" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="272" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E313244" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87015" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="88980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAG</genome_strand>
        <mrna_strand>GTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGGAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGGTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313131" ref_strand="+" ref_description="SGN-E313131 [cTOA-18-K17]">
      <seq>tagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86716" stop="89530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87016" g_stop="87110" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="156" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="263" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89230" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="521" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E313131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87016" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGG</genome_strand>
        <mrna_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725908" ref_strand="+" ref_description="SGN-E725908 [LA08CH01]">
      <seq>tagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttatgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgagtacagtttagttgactgtcaagctctggttcttgcaccaacccgtgagcttgctcaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86716" stop="89467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87016" g_stop="87110" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="156" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="263" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89167" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="458" r_length="195" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E725908" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87016" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGA</genome_strand>
        <mrna_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTATGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGAGTACAGTTTAGTTGACTGTCAAGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCTCAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709531" ref_strand="+" ref_description="SGN-E709531 [FA52BC12]">
      <seq>cactcttaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86720" stop="90925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87017" g_stop="87110" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="155" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="262" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="693" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90625" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="772" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E709531" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87017" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTG</genome_strand>
        <mrna_strand>CACTCTTAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728189" ref_strand="+" ref_description="SGN-E728189 [LA17AA03]">
      <seq>agatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86717" stop="89701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87017" g_stop="87110" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="155" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="262" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89401" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="691" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E728189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87017" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATC</genome_strand>
        <mrna_strand>AGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317832" ref_strand="+" ref_description="SGN-E317832 [cTOA-30-H9]">
      <seq>atccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgngtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86719" stop="89563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87019" g_stop="87110" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="153" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="260" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89263" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="551" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E317832" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87019" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGNGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310454" ref_strand="+" ref_description="SGN-E310454 [cTOA-9-G13]">
      <seq>atccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86719" stop="89540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87019" g_stop="87110" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="153" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="260" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89240" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="528" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E310454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87019" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGT</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333404" ref_strand="+" ref_description="SGN-E333404 [cTOD-20-J3]">
      <seq>tccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaagttcatgcttgtgttgggggtaccagtgtccgtgaagatcagcgcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86720" stop="89561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87020" g_stop="87110" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="152" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="259" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89261" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="547" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E333404" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87020" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCT</genome_strand>
        <mrna_strand>TCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAA-GTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320231" ref_strand="+" ref_description="SGN-E320231 [cTOB-21-I8]">
      <seq>cgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgacacatcaagatgtttgttttggatgaagctgacgaatgctctctagaggtttncaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86722" stop="90910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87022" g_stop="87110" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="150" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="686" r_length="429" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90610" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="750" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E320231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87022" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGC</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGA-CACATCAAGATGTTTGTTTTGGATGAAGCTGACG-AATGCTCTCTAGAGGTTTNCAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329365" ref_strand="+" ref_description="SGN-E329365 [cTOD-2-M7]">
      <seq>cgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86722" stop="89613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87022" g_stop="87110" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="150" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89313" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="598" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E329365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87022" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATG</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268134" ref_strand="+" ref_description="SGN-E268134 [cLEI-15-E22]">
      <seq>cgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcatgcacaatctggtactggaaagacagcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcacgctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86722" stop="89508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87022" g_stop="87110" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="150" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89208" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="493" r_length="236" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E268134" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87022" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTG</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCATGCACAATCTGGTACTGGAAAGACAGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCACGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246419" ref_strand="+" ref_description="SGN-E246419 [cLEF-52-E24]">
      <seq>ggagtttttgtacaactgcagtctttgcaaacccgaattgtcaaatctttcagatcgttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcatgcacaatctggtactggaaagactgcaactctctgctctggaattctccatcagcttgattacagtttagttgagtgtcacgctctggttcttgcaccaacccgtgagcttgcacaacagattgagaatgttatgagagcacttggtgactacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86725" stop="89503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87025" g_stop="87110" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="147" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="254" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89203" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="485" r_length="231" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E246419" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87025" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGG</genome_strand>
        <mrna_strand>GGAGTTTTTGTACAACTGCAGTCTTTGCAAACCCGAATTGTCAAATCTTTCAGATCGTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCATGCACAATCTGGTACTGGAAAGACTGCAACTCTCTGCTCTGGAATTCTCCATCAGCTTGATTACAGTTTAGTTGAGTGTCACGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAATGTTATGAGAGCACTTGGTGACTACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705533" ref_strand="+" ref_description="SGN-E705533 [FA27BF10]">
      <seq>cggtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86728" stop="91013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87026" g_stop="87110" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="146" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="253" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="684" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90713" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="851" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E705533" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87026" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGT</genome_strand>
        <mrna_strand>CGGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310574" ref_strand="+" ref_description="SGN-E310574 [cLEZ-19-D10]">
      <seq>tttttgttaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86729" stop="89442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87029" g_stop="87110" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="143" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="250" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89142" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="420" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E310574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87029" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCA</genome_strand>
        <mrna_strand>TTTTTGTTAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200207" ref_strand="+" ref_description="SGN-E200207 [cLEC-12-C15]">
      <seq>ttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacacacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaatgcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86730" stop="89496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87030" g_stop="87110" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="142" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="249" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89196" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="473" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E200207" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87030" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGAC</genome_strand>
        <mrna_strand>TTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACACACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATGCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249752" ref_strand="+" ref_description="SGN-E249752 [cLEF-57-I22]">
      <seq>aaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaagctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaagccgtgtctttgacatgttgcgcaggcagtctcttcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86736" stop="89636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87036" g_stop="87110" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="136" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="243" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89336" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="607" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E249752" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87036" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCC</genome_strand>
        <mrna_strand>AAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAAGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAAGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237690" ref_strand="+" ref_description="SGN-E237690 [cLED-19-D13]">
      <seq>caaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgtttggggtaccagtgtccgtgaggatcagcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86766" stop="89557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87066" g_stop="87110" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="106" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="213" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89257" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="498" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E237690" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87066" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCA</genome_strand>
        <mrna_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTTGGGGTACCAGTGTCCGTGAGGATCAGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233208" ref_strand="+" ref_description="SGN-E233208 [cLED-6-L12]">
      <seq>caaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86766" stop="89555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87066" g_stop="87110" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="106" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="213" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89255" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="496" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E233208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87066" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCG</genome_strand>
        <mrna_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227005" ref_strand="+" ref_description="SGN-E227005 [cLED-1-D24]">
      <seq>caaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttaattgagtgtcaggctctggttcttgcaccaacccgtgagcttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86766" stop="89461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87066" g_stop="87110" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="106" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="213" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="402" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E227005" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87066" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCAC</genome_strand>
        <mrna_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAATTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703897" ref_strand="+" ref_description="SGN-E703897 [FA22DB03]">
      <seq>ctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaagaagagtggaagcttgaaacactatgtgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="86771" stop="91060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87071" g_stop="87110" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="101" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="208" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88973" g_stop="89403" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="639" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90547" g_stop="90760" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="853" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E703897" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87071" e_stop="87110"/>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89403"/>
          <exon e_start="90547" e_stop="90760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTT</genome_strand>
        <mrna_strand>CTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAAGAAGAGTGGAAGCTTGAAACACTATGTGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257526" ref_strand="+" ref_description="SGN-E257526 [cLEG-45-K7]">
      <seq>gcttctctttccctcagatcttttactcttctttatcagtcatggctggcttggcaccggaaggttctcaatttgatgctcgtcaatttgatgctaaaatgacagagctgcttgggactgaacagcaggagttctttacatcatatgatgaagttcatgacagtttcgatgccatgggtttgcaagaaaatcttcttaggggcatctatgcctatggttttgagaagccatctgctatccagcaaaggggtattgttcctttttgcaagggtcttgatgtgattcaacaggcacaatctggtacaggaaagacagcaactttctgctctgggattctccagcagcttgattacagcttagtcgaatgtcaggctctggttctggctccaacccgtgagcttgcccaacagattgagaaggttatgcgagcacttggtgactatcttggtgtgaaggttcatgcctgtgtangaggtaccantgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggttgttggtactcctggtcgtgtatttgatatgttgcgtaagcagtctcttcgccctgaccacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="88207" stop="89647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88541" g_stop="88601" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="109" r_length="61" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88778" g_stop="88884" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="216" r_length="107" r_score="0.916"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="0.94"/>
            <acceptor a_prob="0.033" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88973" g_stop="89347" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="591" r_length="375" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E257526" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88541" e_stop="88601"/>
          <exon e_start="88778" e_stop="88884"/>
          <exon e_start="88973" e_stop="89347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCA</genome_strand>
        <mrna_strand>GCTTGGCACCGGAAGGTTCTCAATTTGATGCTCGTCAATTTGATGCTAAAATGACAGAGCT................................................................................................................................................................................GCTTGGGACTGAACAGCAGGAGTTCTTTACATCATATGATGAAGTTCATGACAGTTTCGATGCCATGGGTTTGCAAGAAAATCTTCTTAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCTTTTTGCAAGGGTCTTGATGTGATTCAACAGGCACAATCTGGTACAGGAAAGACAGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCTTAGTCGAATGTCAGGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTTCATGCCTGTGTANGAGGTACCANTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTTGTTGGTACTCCTGGTCGTGTATTTGATATGTTGCGTAAGCAGTCTCTTCGCCCTGACCACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274069" ref_strand="+" ref_description="SGN-E274069 [cLEN-8-D18]">
      <seq>ttgggactgaacagcaggagttctttacatcatatgatgaagttcatgacagtttccatgccatgggtttgcacgaaaatcttcttaggggcatctatgcctatggttttgagaagccatctgctatccagcaaaggggtattgttcctttttgcaagggtcttgatgtgattcaacaggcacaatctggtacaggaaagacagcaactttctgctctgggattctccagcagcttgattacagcttagtctaatgtcaagctctggttctggctccaacccgtgagcttgcccaacagattgagaaggttatgcgagcacttggtgactatcttggtgtgaaggttcatgcctgtgtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="88480" stop="89528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88780" g_stop="88884" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88">
            <donor d_prob="0.719" d_score="0.90"/>
            <acceptor a_prob="0.033" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88973" g_stop="89229" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="362" r_length="257" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E274069" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88780" e_stop="88884"/>
          <exon e_start="88973" e_stop="89229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGG</genome_strand>
        <mrna_strand>TTGGGACTGAACAGCAGGAGTTCTTTACATCATATGATGAAGTTCATGACAGTTTCCATGCCATGGGTTTGCACGAAAATCTTCTTAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCTTTTTGCAAGGGTCTTGATGTGATTCAACAGGCACAATCTGGTACAGGAAAGACAGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCTTAGTCTAATGTCAAGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTTCATGCCTGTGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709460" ref_strand="+" ref_description="SGN-E709460 [FA52AD12]">
      <seq>cgctcaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="88841" stop="91307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89139" g_stop="89403" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90547" g_stop="91007" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="725" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E709460" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89139" e_stop="89403"/>
          <exon e_start="90547" e_stop="91007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCT</genome_strand>
        <mrna_strand>CGC-TCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344362" ref_strand="+" ref_description="SGN-E344362 [cTOF-16-F22]">
      <seq>gctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgattnttggtatatttattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="89068" stop="91507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89368" g_stop="89403" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90547" g_stop="91207" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="697" r_length="661" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E344362" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89368" e_stop="89403"/>
          <exon e_start="90547" e_stop="91207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTT</genome_strand>
        <mrna_strand>GCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTNTTGGTATATTTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272429" ref_strand="+" ref_description="SGN-E272429 [cLEM-19-D21]">
      <seq>acgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="89072" stop="91347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89372" g_stop="89403" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90547" g_stop="91047" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="533" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E272429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89372" e_stop="89403"/>
          <exon e_start="90547" e_stop="91047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGT</genome_strand>
        <mrna_strand>ACGAAATGCTCTCTAGAGGTTTCAAGGATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271901" ref_strand="+" ref_description="SGN-E271901 [cLEM-8-J22]">
      <seq>atgtgtaagtctctctttcttttataattttcaatttgcttgacaatatatgccagttattgatcagcttgttggcgagtcctccctccccccaaattgtagctttgatgtgctctaactaacctttgtcaacaattgctgccacatctttctggtttattcctcctttgttttgatgatttaacttttcccatgacacaaatattattttccagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90032" stop="91081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90332" g_stop="90781" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E271901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90332" e_stop="90781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCC</genome_strand>
        <mrna_strand>ATGTGTAAGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309977" ref_strand="+" ref_description="SGN-E309977 [cTOA-4-K9]">
      <seq>gagaactagtctctctttcttttataattttcaatttgcttgacaatatatgccagttattgatcagcttgttggcgagtcctccctccccccaaattgtagctttgatgtgctctaactaacctttgtcaacaattgctgccacatctttctggtttattcctcctttgttttgatgatttaacttttcccatgacacaaatattattttccagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagctttatgtcaatgtcgataaggaagagtggaagcttgaaacactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90037" stop="91051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90340" g_stop="90751" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="420" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E309977" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90340" e_stop="90751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTAT</genome_strand>
        <mrna_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGCTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309980" ref_strand="+" ref_description="SGN-E309980 [cTOA-4-M1]">
      <seq>gagaactagtctctctttcttttataattttcaatttgcttgacaatatatgccagttattgatcagcttgttggcgagtcctccctccccccaaattgtagctttgatgtgctctaactaacctttgtcaacaattgctgccacatctttctggtttattcctcctttgttttgatgattcaacttttcccatgacacaaatattattttccagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaagtattaagcagttttatgtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90037" stop="91017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90340" g_stop="90717" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="386" r_length="378" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E309980" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90340" e_stop="90717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAAT</genome_strand>
        <mrna_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTCAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAAGTATTAAGCAGTTTTATGTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362679" ref_strand="+" ref_description="SGN-E362679 [cLPP-1-O11]">
      <seq>ttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcccgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattttatgtcaatgtcgataaggaagagtggaagctcgaaacactttgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacacaagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90249" stop="91253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90549" g_stop="90953" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E362679" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90549" e_stop="90953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCT</genome_strand>
        <mrna_strand>TTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCCGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTCGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACAAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231723" ref_strand="+" ref_description="SGN-E231723 [cLED-4-N17]">
      <seq>tgaacaagcctgtgaggatccttgtgaagcgtgatgagctcactcttgaaggtatcaagcaattttatgtcaatgttgacaaggaagagtggaagcttgaaactctttgcgatctttacgagaccttagccatcacccagagtgtcatctttgtgaacaccaggcgcaaggttgattggctcactgataagatgcgcagccgtgatcacacagtatctgccactcatggagacatggaccagaacactagagatatcattatgcgagagttccgatctggatcatctcgtgtgctcatcactactgatcttctggcacgtggtattgatgtgcagcaagtatcccttgtgattaactatgacctgcctactcagccagaaaactacttgcatcgtattggtcgtagtggacgatttggaaggaagggtgtagctatcaattntgtcacaaaggatgatgaaaggatgctttttgacattcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90344" stop="91428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90644" g_stop="91128" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E231723" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90644" e_stop="91128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAG</genome_strand>
        <mrna_strand>TGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTACGAGACCTTAGCCATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTTGATTGGCTCACTGATAAGATGCGCAGCCGTGATCACACAGTATCTGCCACTCATGGAGACATGGACCAGAACACTAGAGATATCATTATGCGAGAGTTCCGATCTGGATCATCTCGTGTGCTCATCACTACTGATCTTCTGGCACGTGGTATTGATGTGCAGCAAGTATCCCTTGTGATTAACTATGACCTGCCTACTCAGCCAGAAAACTACTTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTAGCTATCAATTNTGTCACAAAGGATGATGAAAGGATGCTTTTTGACATTCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239509" ref_strand="+" ref_description="SGN-E239509 [cLED-23-J8]">
      <seq>tgaacaagcctgtgaggatccttgtgaagcgtgatgagctcactcttgaaggtatcaagcaattttatgtcaatgttgacaaggaagagtggaagcttgaaactctttgcgatctttacgagaccttagccatcacccagagtgtcatctttgtgaacaccaggcgcaaggttgattggctcactgataagatgcgcagccgtgatcacacagtatctgccactcatggagacatggaccagaacactagagatatcattatgcgagagttccgatctggatcatctcgtgtgctcatcactactgatcttctggcacgtggtattgatgtgcagcaagtatcccttgtgattaactatgacctgcctactcagccagaaaactacttgcatcgtattggtcgtagtggacgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90344" stop="91362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90644" g_stop="91062" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E239509" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90644" e_stop="91062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGA</genome_strand>
        <mrna_strand>TGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTACGAGACCTTAGCCATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTTGATTGGCTCACTGATAAGATGCGCAGCCGTGATCACACAGTATCTGCCACTCATGGAGACATGGACCAGAACACTAGAGATATCATTATGCGAGAGTTCCGATCTGGATCATCTCGTGTGCTCATCACTACTGATCTTCTGGCACGTGGTATTGATGTGCAGCAAGTATCCCTTGTGATTAACTATGACCTGCCTACTCAGCCAGAAAACTACTTGCATCGTATTGGTCGTAGTGGACGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348253" ref_strand="+" ref_description="SGN-E348253 [cTOF-27-G24]">
      <seq>tgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaaccttttttttttttttgcaaattttgtttggtttgtcattttatacctttaaagtatccaaataactttgtattttggtgttgtttgaattgtttaattgatctattttcctatgggaagtaaagcttttagttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90453" stop="91736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90753" g_stop="91436" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E348253" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90753" e_stop="91436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACC-TTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTA-TTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGA</genome_strand>
        <mrna_strand>TGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTTCCTATGGGAAGTAAAGCTTTTAGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711255" ref_strand="-" ref_description="SGN-E711255 [FB01BG10]">
      <seq>tttttttacccccccctaagggggaaaagggttccggccccccccccgggggtttttttttttttttttttttttttttttttttttttacaaagttatttgggtactttaaaggtataaaatggcaaacccaacaaaatttgcaaaaaaaaaaaaaaaggtttcatttgaatcaggaaaggaactggtgctgtggcaaaccatggctaccagcatttcctaattccaagtctagtacaaactgatactaaatctaagaataaatataccaaaaatcgccttagaggagatcagcaacattggctgggagctcctcaattacgacgttgtaaaacttctgtatgtcaaaaagcatcctttcatcatccttggtgacaaagttgatagcaacacccttccttccaaatcgtccactacgaccaatacgatgcaggtagttttctggttgagttggcaggtcatagttaataacaagggagacttgttggacatcaataccacgagcaaggagatcggttggataaacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="105020" stop="90634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93589" g_stop="93499" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93498" i_stop="91370" i_length="2129">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91369" g_stop="90933" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="529" r_length="438" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E711255" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711255" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93589" e_stop="93499"/>
          <exon e_start="91369" e_stop="90933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACACAAATCAAAACCAACCCAAACTAGTAAAAACCAACAACATCCAACCCCAACTGCAAAAAGATCACAACTTTACTTATGAATCATCAAGAACTCAAATACCCATTTAAACCTAACCACACAGATACAAGAATCCAGCAAAACACACAAAAAAATAACCACACACAAAGCAAAAAAAAACAAAAACAAAAAAAGTTCAGCAGAAACAAGAGAGTTACCTTGTAGCTAACAAGAAGATTGTTAAAGAGAGATCTGAAGATTTGAGAAAAAGGGGATTCTTGAGAATTAGGGTTTGTAAAGACTGCAGCTTTTTTCCAAAAACTCCTCGGATCTACGCCGCGTAGTTCAGGAAGACAATATTGTGTGAAAGAGAGTTTTTATGATTATGTTATGTTTTGTCTTTATATGTTTCCAAATTCCTTATGTAAATTTGAGTTGAAAATAAAAAAAGAAAAAAAATTCAAATAAATTTCCCTAACCTATTATATTTTGGTGGTAAGTTTTAAAAAATATTTTCATAATTTATTAAAAGTTATTAGCATTTTTTGGTCTTAGTAAAATATTTACTAAATTATAATTATTAATTTGGGCAAACGACTTAAATCGCATACTTATAAGTTTATAATTACAGAAATTCCTCAAACTGATACAGTAATATAAAAACTGATACATTAATCTGATGCGCGAGATACATTAATCATTAAGTAAGATGCATTACATATTATACCTGATACACAAATCTGATGTGGGAAATACATTAATCTGATACACGAGATACATTAATTTGATGCGCTGATACATTAATTTGATGCGTGAAAAATAAGGGATTTTGAAAATTTGTAAAACTAATAGGGAATAATGGTAATAAAAAAACTTAAAGGCGAGATTTCTGTCATTTTTCACAATTTAATTTTGAAATAGTAGAATATAAATTTTAATCAACAAATTAAAATTTAAAATAGTAGAAAATATTCATGAGAAATTCACATTATATTGTAATTTATATTTGTTTTTTTTGGTCGATTTAAAATTATGGGATAATTTTTAGGATTAATGATTGTTATGTTTTTACTTTTTTGTAGTATGTAGTTTATTAGTATGTTGCAATATATAAAGACTTTAATGGAGACTTTTGGTGTTTAATGTTTATGGTTAATAATTTTTTTTCAATATTTAAATTAAATAACTAGGTTTATCTAGGTTTCTGATAAATATTTGAAAAATATACTCATTTTTTGACAATTTAAAAGGACTGAAACAGCTCAAAAGTGGTACATATGGGACTATTTTGAAACTAATATTAAAGACAAGGGACTATTTTCTAGTAGAAATTTTCTCTTTTTCTGATAAATTTTTTTAATTGAATATGAGATTTACTTTATATAAGTGTTTTCTAATCTCTAACAAAAAGATATAATTTTATTTTAACACAAAACTACTAAAGAAAATGAACCTTTAAAAAGTATTATACAATTTTAGTTTGTGAGTTTTAGTAACACACCTCACTCCGTCATATAAACCACAATTTTCTTTCTGATAACAAAGAAAACCCGCAGTCACTATCCTTTGAGTGCACACAGAATAAAACTTCCTCTCATATGCAATAACTCGCAAATCACTAGGCAAGCTTGGTGCGACAAGCTCGACCCAGAAGACAAACCCCTTGCTTTAGCTGGGAAGGGGTTTCGAACTTGATTACTCCAACATGAAAGTCCATACCTCACTCCGTCATATAAACCACAATTTTCTTTTTGATGACAAGGAAAACCCGCAGTTACTATTCTTTAAATGCGCACAAAATAAAACTCTCGTTCCTATGCAATAATTCGCAAACCACTAGGCAAGCTTGATGCGACAAGCTCGATCCAGAAGACATACCCCTTGCTTTAGCTGGAAAGGGGTTTCGAACTTGAGACCTCCAACACGAAAGTCTCAAGCTCAAACAACTGAGCCACCCGAAGGTCACATAAACCACAACCTTCTATGTTTAAAAGAATATAACCACAAAGTCTGGAGTACAAATATGAAATATAGCATCAAAATGAGAAAAAAACAGATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAA-AAAA-AAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACA</genome_strand>
        <mrna_strand>TTTTTTTACCCCCCCCTAAGGGGGAAAAGGGTTCCGGCCCCCCCCCCGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTATTTGGGTACTTTAAAGGTATAAAATGGCAAACCCAACAAAATTTGCAAAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTG-GATAAACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259863" ref_strand="+" ref_description="SGN-E259863 [cLEG-51-D22]">
      <seq>tttaatccaactaaaagctttaccttccatagggaaatagatcaattaaacaattcaaacaacaccaaatacaaagttatttggatactttaaaggtataaaatgacaaaccaaacaaaatttgcaaaaaaaaaaaaaaggtttcatttgaatcaggaaaggaactggtgctgtggcaaaccatggctaccagcatttcctaattccaagtctagtacaaactgatactaaatctaagaataaatataccaaaaatcgccttagaggagatcagcaacattggctgggagctcctcaattacgacgttgtaaaacttctgtatgtcaaaaagcatcctttcatcatccttggtgacaaagttgatagcaacacccttccttccaaatcgtccactacgaccaatacgatgcaggtagttttctggttgagttggcaggtcatagttaataacaagggagacttgttggacatcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="91739" stop="90665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91441" g_stop="90965" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E259863" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91441" e_stop="90965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGC-AAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATAC</genome_strand>
        <mrna_strand>TTTAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227006" ref_strand="+" ref_description="SGN-E227006 [cLED-1-D24](-)">
      <seq>aacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaaccttttttttttttttgcaaattttgtttggtttgtcattttatacctttaaagtatccaaataactttgtatttggtgttgtttgaattgtttaattgatctatttccctatggaaggtaaagcttttagttggattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90677" stop="91739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90977" g_stop="91438" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="503"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E227006" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90977" e_stop="91438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACC-TTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</genome_strand>
        <mrna_strand>AACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351894" ref_strand="+" ref_description="SGN-E351894 [cTOS-8-H5]">
      <seq>tcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaacctttttttttttttgcaaattttgtttggtttgtcattttatacctttaaagtatccaaataactttgtatttggtgttgtttgaattgtttaattgatctatttccctatggaaggtaaagcttttagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="90714" stop="91734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91014" g_stop="91435" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E351894" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91014" e_stop="91435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGG</genome_strand>
        <mrna_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262796" ref_strand="+" ref_description="SGN-E262796 [cLEG-63-N2]">
      <seq>tttaatccaactaaaagctttaccttccatagggaaatagatcaattaaacaattcaaacaacaccaaatacaaagttatttggatactttaaaggtataaaatgacaaaccaaacaaaatttgcaaaaaaaaaaaaaagggttcatttgaatcaggaaaagaactggtgctgtggcaaaccatggctaccagcatttcctaatttcaagtctagtacaaactgatactaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="91739" stop="90910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91441" g_stop="91210" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E262796" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91441" e_stop="91210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGC-AAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAAT</genome_strand>
        <mrna_strand>TTTAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGGTTCATTTGAATCAGGAAAAGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTTCAAGTCTAGTACAAACTGATACTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719603" ref_strand="+" ref_description="SGN-E719603 [FC08BD06]">
      <seq>tggcggccaaatcggccgaattgctctttcacacaatatcgttttcctgaactacgcggcgtaaatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcaaatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92821" stop="97613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93124" g_stop="93278" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="177" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="353" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="784" r_length="431" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="848" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E719603" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93124" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCACACAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGC</genome_strand>
        <mrna_strand>GCTCTTTCACACAATATCGTTTTCCTGAACTACGCGGCGTAAATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAAATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705457" ref_strand="+" ref_description="SGN-E705457 [FA27AH01]">
      <seq>caatattgtcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92835" stop="97609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93135" g_stop="93278" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="213" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="320" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="751" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97309" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="811" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E705457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93135" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACA</genome_strand>
        <mrna_strand>CAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727165" ref_strand="+" ref_description="SGN-E727165 [LA13DF10]">
      <seq>cggtcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92842" stop="97636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93140" g_stop="93278" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="208" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="315" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="746" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97336" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="833" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E727165" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93140" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACT</genome_strand>
        <mrna_strand>CGGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747381" ref_strand="+" ref_description="SGN-E747381 [GI|47104581]">
      <seq>tcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92843" stop="98389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93143" g_stop="93278" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="205" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="312" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="743" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="98088" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="1582" r_length="839" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1584" polyA_stop="1603"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E747381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1582</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93143" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="98088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAT</genome_strand>
        <mrna_strand>TCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305351" ref_strand="+" ref_description="SGN-E305351 [cLEX-15-H18]">
      <seq>tcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggagagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92843" stop="96698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93143" g_stop="93278" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="205" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="312" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96398" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="573" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E305351" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93143" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTA</genome_strand>
        <mrna_strand>TCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAGAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280066" ref_strand="-" ref_description="SGN-E280066 [cLEL-7-B4](-)">
      <seq>gcacgagactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92850" stop="96485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93146" g_stop="93278" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="203" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="310" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96185" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="358" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E280066" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280066" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93146" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGA-ACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTT</genome_strand>
        <mrna_strand>GCACGAGACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701765" ref_strand="+" ref_description="SGN-E701765 [FA16DE11]">
      <seq>gaactatgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92850" stop="97565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93150" g_stop="93278" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="198" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="305" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="736" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97265" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="752" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E701765" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93150" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCC</genome_strand>
        <mrna_strand>GAACTATGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304281" ref_strand="+" ref_description="SGN-E304281 [cLEX-12-E5]">
      <seq>actacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcacgctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92852" stop="96697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93152" g_stop="93278" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="196" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="303" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96397" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="563" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E304281" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93152" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGT</genome_strand>
        <mrna_strand>ACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCACGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726160" ref_strand="+" ref_description="SGN-E726160 [LA11AA05]">
      <seq>cgtttatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgcccaccaagatccaagtgggtgttttctctgctacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92861" stop="97611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93161" g_stop="93278" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="187" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="294" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="725" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97311" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="787" r_length="62" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E726160" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93161" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAAT</genome_strand>
        <mrna_strand>CGTTTATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCCACCAAGATCCAAGTGGGTGTTTTCTCTGCTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724767" ref_strand="+" ref_description="SGN-E724767 [FC25AD10]">
      <seq>gattggcggccaatcggccgaattggaactacgcggcgccatttccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcattttgatgctcgccaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgaaaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggtaattggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92867" stop="96848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93166" g_stop="93278" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="155" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="224" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="331" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96548" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="742" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E724767" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93166" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCT</genome_strand>
        <mrna_strand>TTCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCATTTTGATGCTCGCCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAAAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTAATTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308980" ref_strand="+" ref_description="SGN-E308980 [cLEY-23-F19]">
      <seq>atccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttccctttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92866" stop="96705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93166" g_stop="93278" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="289" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96405" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="558" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E308980" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93166" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCC-TTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGT</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308891" ref_strand="+" ref_description="SGN-E308891 [cLEY-23-H1]">
      <seq>atccgaggagtttttggaaaaaagctgcagtctttacaaacccgtgttctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttccctttttgcaagggccttgatgttatccagcatgcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcacgctcttgttcttgcaccaacccctgagctggcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92866" stop="96629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93166" g_stop="93278" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="289" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96329" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="482" r_length="193" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E308891" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93166" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCC-TTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAAC</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCGTGTTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTTGCAAGGGCCTTGATGTTATCCAGCATGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCACGCTCTTGTTCTTGCACCAACCCCTGAGCTGGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320499" ref_strand="+" ref_description="SGN-E320499 [cTOB-22-E5]">
      <seq>cgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92869" stop="96728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93169" g_stop="93278" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="179" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="286" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96428" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="577" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E320499" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93169" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTC</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322765" ref_strand="+" ref_description="SGN-E322765 [cTOB-30-C9]">
      <seq>cgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttcttgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacacagattgagaaagttatgcgtgcgctcggagactatctgggcgtgaggttcatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92869" stop="96686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93169" g_stop="93278" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="179" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="286" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96386" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="534" r_length="248" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E322765" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93169" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTC-TGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGT</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCAC-ACAGATTGAGAAAGTTATGCGTGCGCTCGGAGACTATCTGGGCGTG-AGGTTCATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366050" ref_strand="+" ref_description="SGN-E366050 [cLPT-15-K18]">
      <seq>agtttttggaaaaaagctgcagactttacaaaccctacttttcaaaaatcccctttttctcaaatcttcagatctctttttaacaatcttcttattagctacacgtatggcaggctcggcaccagagggtgctcaatttgatgctcgtcaattcgatgcaaaagtgacggagctacttggtactgaacaacaagattttggcacatcatatgatgaggtggatgacagttttgatgccatgggtttgcatgagaaccttatgagaggcatctatgcctatggtggtgagaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92874" stop="96351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93174" g_stop="93278" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="174" r_length="69" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.845" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="281" r_length="107" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.339" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96150" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="294" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E366050" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93174" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCC</genome_strand>
        <mrna_strand>AGTTTTTGGAAAAAAGCTGCAGACTTTACAAACCCTACTTTTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTTTTTAACAATCTTCTTATTAGCTACACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTGCTCAATTTGATGCTCGTCAATTCGATGCAAAAGTGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTGGCACATCATATGATGAGGTGGATGACAGTTTTGATGCCATGGGTTTGCATGAGAACCTTATGAGAGGCATCTATGCCTATG........................................................................................GTGGTGAGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347897" ref_strand="+" ref_description="SGN-E347897 [cTOF-31-G6]">
      <seq>ggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92881" stop="96872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93181" g_stop="93278" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="167" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="274" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="705" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E347897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93181" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG</genome_strand>
        <mrna_strand>GGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549051" ref_strand="+" ref_description="SGN-E549051 [TUS-66-N15]">
      <seq>aaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggttcaaggatcagatttatgatatattccagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92885" stop="97573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93185" g_stop="93278" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="163" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="270" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="700" r_length="430" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97273" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="724" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E549051" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93185" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTG</genome_strand>
        <mrna_strand>AAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGG-TTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307043" ref_strand="+" ref_description="SGN-E307043 [cLEY-15-K7]">
      <seq>aaagctgcagtctttacaaaccctaattctcaagaatccggtttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92886" stop="96783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93186" g_stop="93278" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="162" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="269" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96483" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="615" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E307043" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93186" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCG</genome_strand>
        <mrna_strand>AAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCGGTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701586" ref_strand="+" ref_description="SGN-E701586 [FA16BE12]">
      <seq>ctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgcccccagaggctcttgagattactagaaaattcatggacaagccagtgagaattctcgtgaagcgtgatgacctcactcttgaaggtattaagcaattctatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92908" stop="97717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93208" g_stop="93278" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="140" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="247" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="678" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97417" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="846" r_length="168" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E701586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93208" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTC</genome_strand>
        <mrna_strand>CTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCCCCAGAGGCTCTTGAGATTACTAGAAAATTCATGGACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGACCTCACTCTTGAAGGTATTAAGCAATTCTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719325" ref_strand="+" ref_description="SGN-E719325 [FC07CA10]">
      <seq>taattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcaccgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="92909" stop="97581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93209" g_stop="93278" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95749" g_stop="95817" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="139" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95943" g_stop="96049" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="246" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="677" r_length="431" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97250" g_stop="97281" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="709" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E719325" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93209" e_stop="93278"/>
          <exon e_start="95749" e_stop="95817"/>
          <exon e_start="95943" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAGGTAACTCTCTTGTTTCTGCTGAACTTTTTTTGTTTTTGTTTTTTTTTGCTTTGTGTGTGGTTATTTTTTTGTGTGTTTTGCTGGATTCTTGTATCTGTGTGGTTAGGTTTAAATGGGTATTTGAGTTCTTGATGATTCATAAGTAAAGTTGTGATCTTTTTGCAGTTGGGGTTGGATGTTGTTGGTTTTTACTAGTTTGGGTTGGTTTTGATTTGTGTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTGTTTGAGTTTCTGATGATTCATAAAGTAAAGTTGTGATTTTTATGCTGCTGGGTTTTGTGGGGTTGGATGTTGGTTTTACCTAGTTTGGGTTGGTTTTAATTTGTATGGTGCTTGAATTTTTGATGTTTTGATTGGCGTAAGGCAGTGATTTTTTCAGATAGTTTGGTATTGTGGAGTTTGATGTTCTTGGTCTTCACTAATTTGGGTTGGTTTTGATATGTATATGTTTGTTTTAGTTTAGATGGTGTTTGAGTTTTTGATGATCCATTGGTGTAAAGTTGTGATTGTTTTTATAGTTGAGGTTTGTGGGGTTGGATGTTGTTGGTTTTTACTAATTTGAGTTGGGTTTGATTTGTGTATGTTTGTTGTTAAGATGGTGTTTGAGTTTTTGAGGATTCATAAAGTAATGATTTTCAGACAGTTGGGTATTGTGGGTTTGATGTTCTTGCTCTTAACTAATTTGGATTGGTTTTTATTTGTATCTGTTTGTGTTTGATTTAGTTTAGATGGTGTTTGAGGTTTTGAATATTCATTGGTGTGAATTAGTGAATTTTTCTGACAGTTCGGTATTGTGGGGTTTGATATTCTTGCTCTTTAATTAATTTGGGTTGGTTTTGATTTGTATCTGTTTGTGTTTGTGTTAGTTTAGATGGTGCTTGAGGTTTTGATGATTCATTGGAATAAAGTAGTGTTTTTTTTCAGACAGTTTGTGGGGTTCGATGGTCTTGCTCTTCGCTAATTTGGGTTGGTTTTGATTTCTATATGCTTGTTTCAGATTAGATGGTGTATGAGTTTTTGATGTTTCGTCGCCGTAAAGTAGTTATTTTTTATAGTTGGGTTTTGTGGGATCTTCACTAATTTGGGCTGGTTTTGATTTTGTATATGTTTGTTTAGTTTAGATGGTGTTTGAGTTTGGATGTTTTATTGGTGTAAAGTAGGGTTTTTTTCAAACAGTTTGGTTTTGTGAGGTTCAACGTTCTTGCTCTTTGCTAATTTGGGTTTGTTTTGATTTGTATATGTTTATAAGTTTAGATGGTGTTTTGAGTTTAAAGTAGTGGTTTTTCTGCAGTTAGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTCTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACAGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAA</genome_strand>
        <mrna_strand>TAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCACCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700676" ref_strand="+" ref_description="SGN-E700676 [FA13DC12]">
      <seq>accatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95681" stop="97802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95978" g_stop="96049" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="503" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97250" g_stop="97502" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="756" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E700676" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95978" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCA</genome_strand>
        <mrna_strand>ACCATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706890" ref_strand="+" ref_description="SGN-E706890 [FA31AH07]">
      <seq>gtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccactgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95686" stop="97759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95986" g_stop="96049" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96138" g_stop="96568" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="495" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97250" g_stop="97459" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="705" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E706890" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95986" e_stop="96049"/>
          <exon e_start="96138" e_stop="96568"/>
          <exon e_start="97250" e_stop="97459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGAT</genome_strand>
        <mrna_strand>GTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCACTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707655" ref_strand="+" ref_description="SGN-E707655 [FA33CE02]">
      <seq>cgataagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95843" stop="98038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96142" g_stop="96568" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97738" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="916" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E707655" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96142" e_stop="96568"/>
          <exon e_start="97250" e_stop="97738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCAT</genome_strand>
        <mrna_strand>CGATAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707505" ref_strand="+" ref_description="SGN-E707505 [FA33AG12]">
      <seq>cgataagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccaaaaactacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95843" stop="98035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96142" g_stop="96568" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97735" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="912" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E707505" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96142" e_stop="96568"/>
          <exon e_start="97250" e_stop="97735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTG</genome_strand>
        <mrna_strand>CGATAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCA-AAAACTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344144" ref_strand="+" ref_description="SGN-E344144 [cTOF-16-G20]">
      <seq>ttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95895" stop="97928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96195" g_stop="96568" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97628" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="752" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E344144" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96195" e_stop="96568"/>
          <exon e_start="97250" e_stop="97628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCT</genome_strand>
        <mrna_strand>TTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGAC-AAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700295" ref_strand="+" ref_description="SGN-E700295 [FA12CH04]">
      <seq>gttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95900" stop="98094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96200" g_stop="96568" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97794" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="914" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E700295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96200" e_stop="96568"/>
          <exon e_start="97250" e_stop="97794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTAC</genome_strand>
        <mrna_strand>GTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338658" ref_strand="+" ref_description="SGN-E338658 [cTOE-15-B12]">
      <seq>gaaagacggcaactttctgctctggagttctccagcaaccttgattaccagtttagttgaatgtcaggctcttgttcttgcacccaacccgtgagctggcacaacagattgagaaggttatgcgtgccgcctcggagactatctgggcgtgaaggttcatgccgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95928" stop="97691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96228" g_stop="96568" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97391" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="489" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E338658" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96228" e_stop="96568"/>
          <exon e_start="97250" e_stop="97391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAA-CTTGATTA-CAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCA-CCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTG-CG-CTCGGAGACTATCTGGGCGTGAAGGTTCATG-CGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTC</genome_strand>
        <mrna_strand>GAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACCTTGATTACCAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCCGCCTCGGAGACTATCTGGGCGTGAAGGTTCATGCCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708139" ref_strand="+" ref_description="SGN-E708139 [FA34DG12]">
      <seq>cgtctggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="95988" stop="98127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96287" g_stop="96568" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97827" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="860" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E708139" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96287" e_stop="96568"/>
          <exon e_start="97250" e_stop="97827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCA</genome_strand>
        <mrna_strand>CGTCTGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305661" ref_strand="+" ref_description="SGN-E305661 [cLEX-14-F6]">
      <seq>ggcacgaggggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="96104" stop="98005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96403" g_stop="96568" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97503" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="420" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97504" i_stop="97647" i_length="144">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97648" g_stop="97705" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="478" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E305661" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96403" e_stop="96568"/>
          <exon e_start="97250" e_stop="97503"/>
          <exon e_start="97648" e_stop="97705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTAT</genome_strand>
        <mrna_strand>GGCACGAGGGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAA................................................................................................................................................CACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306529" ref_strand="+" ref_description="SGN-E306529 [cLEX-13-H13]">
      <seq>cgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="96119" stop="97976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96419" g_stop="96568" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="97676" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="577" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E306529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96419" e_stop="96568"/>
          <exon e_start="97250" e_stop="97676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACG</genome_strand>
        <mrna_strand>CGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734208" ref_strand="+" ref_description="SGN-E734208 [LB12AC07]">
      <seq>ctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="89080" stop="98387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96545" g_stop="96568" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97250" g_stop="98091" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="866" r_length="842" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E734208" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96545" e_stop="96568"/>
          <exon e_start="97250" e_stop="98091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTT</genome_strand>
        <mrna_strand>CTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544490" ref_strand="+" ref_description="SGN-E544490 [TUS-66-N15](-)">
      <seq>gatttatgatatatcccagcttttgccaccaaagatccaagtgggtgtttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaacttttttcttgaaaccaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="96949" stop="98369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97249" g_stop="98064" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="840"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E544490" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97249" e_stop="98064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCT</genome_strand>
        <mrna_strand>GATTTATGATATATCCCAGCTTTTGCCACCAAAGATCCAAGTGGGTG-TTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACT-TTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321368" ref_strand="+" ref_description="SGN-E321368 [cTOB-23-J24]">
      <seq>tttcatggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacaggatctgcaactcacggagacatggatcagaacactacggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcggggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="96945" stop="97973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97250" g_stop="97673" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="437" r_length="424" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E321368" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97250" e_stop="97673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTG</genome_strand>
        <mrna_strand>ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGGATCTGCAACTCACGGAGACATGGATCAGAACACTACGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGGGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355532" ref_strand="+" ref_description="SGN-E355532 [cTOS-25-O12]">
      <seq>gttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="96995" stop="98273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97295" g_stop="97973" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E355532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97295" e_stop="97973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTT</genome_strand>
        <mrna_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353535" ref_strand="+" ref_description="SGN-E353535 [cTOS-15-B5]">
      <seq>gttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="96995" stop="97776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97295" g_stop="97476" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E353535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>182</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97295" e_stop="97476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGC</genome_strand>
        <mrna_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282485" ref_strand="+" ref_description="SGN-E282485 [cLER-18-E2]">
      <seq>aagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="97131" stop="98200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97431" g_stop="97900" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E282485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97431" e_stop="97900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCT</genome_strand>
        <mrna_strand>AAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257987" ref_strand="+" ref_description="SGN-E257987 [cLEG-48-J17]">
      <seq>aaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaagtggttttggctctgtgagggggaattgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="97139" stop="98220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97439" g_stop="97920" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E257987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97439" e_stop="97920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTT</genome_strand>
        <mrna_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAAGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207553" ref_strand="+" ref_description="SGN-E207553 [cLEC-32-A3]">
      <seq>aaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="97139" stop="98142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97439" g_stop="97842" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E207553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97439" e_stop="97842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGT</genome_strand>
        <mrna_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349352" ref_strand="+" ref_description="SGN-E349352 [cTOS-1-G6]">
      <seq>tcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="97417" stop="98397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97717" g_stop="98096" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="391"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E349352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97717" e_stop="98096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</genome_strand>
        <mrna_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354549" ref_strand="+" ref_description="SGN-E354549 [cTOS-17-E22]">
      <seq>tcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="97417" stop="98397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97717" g_stop="98096" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="391"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E354549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97717" e_stop="98096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</genome_strand>
        <mrna_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229351" ref_strand="+" ref_description="SGN-E229351 [cLEL-4-F16](-)">
      <seq>caactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttctaatgtttgatgctatatttatgtcccactgtttcgtgctcaatcaatcaaagattcatgttaggttaggtccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="97660" stop="98474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97960" g_stop="98173" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="215" polyA_stop="230"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E229351" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97960" e_stop="98173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</genome_strand>
        <mrna_strand>CAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCGTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539253" ref_strand="-" ref_description="SGN-E539253 [TUS-58-O18](-)">
      <seq>tgggtacgggcccccctcgagtttttttttttttctttttttttttttttttttttttttttttttttttttattaaaaataatatatcaaacccttttttttttttttgctttttgggatattataattatatcaaacactatttttccccaaaaaaaatctacataaaaccattttcccccccaatttgccccatctctactaaataaatagtatagtataatatttttatgaaaaaattgcaaaaatcaagcaaataattggtaaataaaaataaaaaccccgaaaaataagttaaagagtaaaaaaaaaaaaactccctttaactatcccgattttttgaattttctatccaaattatcacgggtttgctttttctatccgaattataaccaattttttttcaaaacatacgtaagctatagccattcccgttttctacctgaattattaccgtattaagggaaaaaaaagtgaaaacgtttggttaacgggggattcgaaaaatatttgatcatacttcaaataaaaaaggacctccccaccgataaataattcatcgagataatttagatgtgtttttcgcccttcgctcgtcccgaaaaaatgaatttagaaggcccattttaagatcttcatacgtaaatcagccttacatttagcatttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="64187" stop="100454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98020" g_stop="98088" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.536"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98089" i_stop="99550" i_length="1462">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99551" g_stop="100154" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="672" r_length="604" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E539253" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539253" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98020" e_stop="98088"/>
          <exon e_start="99551" e_stop="100154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAGATTTATCTAACCAATCATGATTCATGCCGAGTAGGCTCTCTAATCGAGAAATACGAGAAGCAAATTGTTGTGTGGATGAATTAATATCTATACTTAAAAAGAGGTAGATTTTGTATCACTTCATCTAGTCGTATGAAACTCGCGAATACCTATCACTTTTGGAAAGATTTGAAATTCTTCATGTAGGGTCTAAAAATTTGATATTTTTTTGTCTAGTTACTTGTTTTTCAACATTTCTTTGCCTAAATTGTTGACCGAGGTTCCGCGCCTAGTGATTTTCCTTTCAAAAAGTCTACACGTGATTTTCCTTTATCAAGTAGATCCTCAAATATAGAAAGTAAAACTTGCCCGAGTAATTTCGTATAAAAGGTAAAAACCTCTTCAAATCGTTGTTCCTTGCCTAGTCAATCAATTAGAATTCATGTCAGGTAGGTCTTTTAAGATTTGCCCGAACTTACGTTGGGTAGGTCCTCTAATTGAGATCAACTAATTTGGATTCATGCATGTAAGGTCCTCTAATCGAGAAGGTAAAACTTGTTTCTAACCAATCACGATTGTGTAGATCTTCTATTCTAAAGAAGGTACTACGTTTCTAAATAAAGATGAAGAAATCTCATTCATACAATAACTTATGTTGTGTTTAAATAAACCCCTCTATTATAAAGAATATAATACGATTCTGAATAAAAATGAAGAAATCTCATCCACGCAATAACTCTTTAACAATGCTTATACTCAATGTTGTGTTTGAGGTTGATATTATAATGCTTTAGAATGATACATGTAAATGCAAATATACAACGTATGAATTCAATATAACTCAATCGTAAATATACTAAGAATTTCACTAAATACGTACATATTATAAACTATATGAACTCGAAAACATAAATTGATTTCGGCTTTAAATTTTGAACTAGCCTCATAAATACAAAACTATGTGTAAATTAGGAAATAATTAATGACTTAGATTGAGATCCACAATGAAATTAACTAGAGAGTAATTTTCTTTAGTACTTATTAATTATGATTGTCAAATTAACAATAAAGTATCTTATTATAATAAAATAATTATATATAACTGTACTATATCATCAACAAATCTAATGTATCCCCAAATAAGAGTTTGAAAATGCTAGAATATATATTAATTTTACATTTACCATAAAAAGATAAAGATATCTTTAAGATAAATTTTTGAATTAAAGAATATAATAGCAACAAATTGAAATAACAATAAGACAATACGAATAATCGAGACTAAAAAAACAATAATAAAAGTCTAAGTATACAAAATAATAACAAGGATAAAACCACTACTTGGAAAACATAATAAAAATTTACATAAATATAATTATTAAGTCACATTAAAGAAGAATTTATTAAGAATAATATATCAAACTCTTTTTTTTTTTTTTGCTTTTTGGTATATTATAATTATATCAAACACTATATTTCACCAAAAAAAATCTACATAAAACCATTTTCCCCCTCAATTTGCCTCATCTCTACTAAATAAATAGTATAGTATAATATTATTATGAATAAATTGCAAAAATCAAGCAAATAATTGATAAATAAAAATAAAAACAACGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTACATTTAACTATCTCGATTTTTTGAATTTTCTATCCAAATTATCACGTGTTTGCTTTTTCTATCCGAATTATAACCAATTATTTATCAAAACATACGTAAGCTATAGCCATTCACGTTTTCTACCTGAATTATTACCGTATTAAGGTAGAAAAAAGTGAAAACGTATGGTTAACGTGTGATTCGATAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCACACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGTCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAG</genome_strand>
        <mrna_strand>TGGGTACGG-GCCCCCCTCGAGTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTAAAAATAATATATCAAACCCTTTTTTTTTTTTTTGCTTTTTGGGATATTATAATTATATCAAACACTATTTTTCCCCAAAAAAAATCTACATAAAACCATTTTCCCCCCCAATTTGCCCCATCTCTACTAAATAAATAGTATAGTATAATATTTTTATGAAAAAATTGCAAAAATCAAGCAAATAATTGGTAAATAAAAATAAAAACCCCGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTCCCTTTAACTATCCCGATTTTTTGAATTTTCTATCCAAATTATCACGGGTTTGCTTTTTCTATCCGAATTATAACCAATTTTTTTTCAAAACATACGTAAGCTATAGCCATTCCCGTTTTCTACCTGAATTATTACCGTATTAAGGGAAAAAAAAGTGAAAACGTTTGGTTAACGGGGGATTCGAAAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCCCACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGCCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539256" ref_strand="+" ref_description="SGN-E539256 [TUS-58-O18]">
      <seq>tgcggattcaatttcatcgttgaaatcagatctgaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgacggaatccatggaagaattccgacggggaaaactccggcggtggcttcaactacaaatgctaaatgtaaggctgatttacgtatgaagatcttaaaatggaccttctaaattcattttttcgggacgagcgaagggcgaaaaacacatctaaattatctcgatgaattatttatcggtgtggaggtccttttttatttgaagtatgatcaaatatttatcgaatcacacgttaaccatacgttttcacttttttctaccttaatacggtaataattcaggtagaaaacgtgaatggctatagcttacgtatgttttgataaataattggttataattcggatagaaaaagcaaacacgtgataatttggatagaaaattcaaaaaatcgagatagttaaatgtagtttttttttttttactctttaacttatttttcgttgtttttatttttatttatcaattatttgcttgatttttgcaatttattcataataatattatactatactatttatttagtagagatgaggcaaattgagggggaaaatggttttatgtagatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="100642" stop="99335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100342" g_stop="99635" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E539256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100342" e_stop="99635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTT</genome_strand>
        <mrna_strand>TGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283511" ref_strand="+" ref_description="SGN-E283511 [cLER-12-M21]">
      <seq>gcggattcaatttcatcgttgaaatcagatctgaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgacggaatccatggaagaattccgacggggaaaactccggcggtggcttcaactacaaatgctaaatgtaaggctgatttacgtatgaagatcttaaaatggaccttctaaattcattttttcgggacgagcgaagggcgaaaaacacatctaaattatctcgatgaattatttatcggtgtggaggtccttttttatttgaagtatgatcaaatatttatcgaatcacacgttaaccatacgttttcacttttttctaccttaatacggtaataattcaggtagaaaacgtgaatggctatagcttacgtatgttttgataaataattggttataattcggatagaaaaagcaaacacgtgataatttggatagaaaattcaaaaaatcgagatagttaaatgtaggtttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="100641" stop="99488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100341" g_stop="99787" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E283511" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100341" e_stop="99787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>GCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGGTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687863" ref_strand="+" ref_description="SGN-E687863 [T3_tus_81_F24]">
      <seq>tagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatggcgtctcaagtgctcgatgcggattcaatttcatcgttgaaatcagatctgaaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgaacggaatccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="101226" stop="99892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100927" g_stop="100192" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E687863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100927" e_stop="100192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTG-AAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTG-ACGGAATCCATGGA</genome_strand>
        <mrna_strand>TAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGAACGGAATCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327237" ref_strand="+" ref_description="SGN-E327237 [cTOC-19-M7]">
      <seq>agagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="101226" stop="100060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100926" g_stop="100360" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E327237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100926" e_stop="100360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</genome_strand>
        <mrna_strand>AGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294754" ref_strand="+" ref_description="SGN-E294754 [cLET-17-O11]">
      <seq>aaaaatggctgacagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="101239" stop="100379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100939" g_stop="100679" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E294754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100939" e_stop="100679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCAT</genome_strand>
        <mrna_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294755" ref_strand="+" ref_description="SGN-E294755 [cLET-17-O11](-)">
      <seq>atgaagaggagtgaccagaaacaacagaagcagaagcaccggcggcaggtgcaacggcggcgattgtgtcggtggtaggcagttggagttggtcggtaagggatgcgattcgggttgtacatttggttcttcgccgccggaggaggaaattgcggcggcttcgcggcggctttgggattgacggccgccgcagcggcaccggtaatattggcagcgttgccatttggcttagctgaagggtgaactctgtcagccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="100379" stop="101239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100679" g_stop="100939" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E294755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100679" e_stop="100939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</genome_strand>
        <mrna_strand>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718338" ref_strand="+" ref_description="SGN-E718338 [FC04BE06]">
      <seq>gggcgaattggcggccaatcggccgaattctctttacaccacttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaaaaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108849" stop="111312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109149" g_stop="109552" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="429" r_length="403" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="698" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="791" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="111012" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="838" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E718338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109149" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCA</genome_strand>
        <mrna_strand>ATTCTCTTTACA-CCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAAAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721822" ref_strand="+" ref_description="SGN-E721822 [FC15BF05]">
      <seq>aatcggccgaattgctctttacaaccacttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108849" stop="111478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109152" g_stop="109552" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="415" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="684" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="777" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="111037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="849" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111158" g_stop="111178" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="870" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E721822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109152" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111037"/>
          <exon e_start="111158" e_stop="111178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCT</genome_strand>
        <mrna_strand>CTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702670" ref_strand="+" ref_description="SGN-E702670 [FA19BE03]">
      <seq>cacttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaagtgatccctttgcacttgcctcctggtgacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108863" stop="111492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109163" g_stop="109552" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="659" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="752" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="111037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="824" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111158" g_stop="111192" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="859" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E702670" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109163" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111037"/>
          <exon e_start="111158" e_stop="111192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATC</genome_strand>
        <mrna_strand>CACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAA........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709631" ref_strand="+" ref_description="SGN-E709631 [FA52CE11]">
      <seq>acttctctcactagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccacaccaaattgctaaggctgaacagttgattaatgacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108864" stop="110943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109164" g_stop="109552" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110643" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="649" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E709631" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109164" e_stop="109552"/>
          <exon e_start="110384" e_stop="110643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTT</genome_strand>
        <mrna_strand>ACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCACACCAAATTGCTAAGGCTGAACAGTTGATTAATGACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342292" ref_strand="+" ref_description="SGN-E342292 [cTOF-8-G18]">
      <seq>tagggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108875" stop="110936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109175" g_stop="109552" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110636" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="630" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E342292" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109175" e_stop="109552"/>
          <exon e_start="110384" e_stop="110636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAA</genome_strand>
        <mrna_strand>TAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTC-AAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710232" ref_strand="+" ref_description="SGN-E710232 [FA54CH12]">
      <seq>cgttttacgaaaaccctaccgccgctgctctccttttacccccaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattgggaaaagaggggaaactataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108878" stop="111302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109176" g_stop="109552" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="646" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="739" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="111002" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="776" r_length="37" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E710232" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109176" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAA</genome_strand>
        <mrna_strand>CGTTTTACGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCCAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGGAAAAGAGGGGAAACTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280823" ref_strand="+" ref_description="SGN-E280823 [cLEL-6-D8](-)">
      <seq>agctccgtcagtagaagataaggaagcgatcggagcagaaaatccagtaggtctacgaggaccaggagacggtgccgcttgatcatagtacttcctcttgttgttaccggcatctggtgcaccgtactgtgcttcgtgtgccattgttgctttcgattccctcagatttggggtaaaaggagagcaacgtcggtagggttttcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="-" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="109686" stop="108884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109386" g_stop="109177" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="-" ref_id="SGN-E280823" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109386" e_stop="109177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACCGTCAGGAGAAGATAAGGAAGCGATCGGAGCAGAAAATCCAGTAGGTCTACGAGGACCAGGAGACGGTGCCGCTTGATCATCGTACTTCCTCTTGTTGTTACCGGCATCTGGTGCACCGTACTGTGCTTCTTCTGCCATTGTTGCTTTCGATTTGCTCAGATTTGGGGTAAAAGGAGAGCAGCGGCGGTAGGGTTTTCGAAACCC</genome_strand>
        <mrna_strand>AGCTCCGTCAGTAGAAGATAAGGAAGCGATCGGAGCAGAAAATCCAGTAGGTCTACGAGGACCAGGAGACGGTGCCGCTTGATCATAGTACTTCCTCTTGTTGTTACCGGCATCTGGTGCACCGTACTGTGCTTCGTGTGCCATTGTTGCTTTCGATTCCCTCAGATTTGGGGTAAAAGGAGAGCAACGTCGGTAGGGTTTTCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702039" ref_strand="+" ref_description="SGN-E702039 [FA17CE09]">
      <seq>ggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattgggaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcaggaaagaacagtcccaattgacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108878" stop="111519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109178" g_stop="109552" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="644" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="737" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="111037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="809" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111158" g_stop="111219" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="871" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E702039" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109178" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111037"/>
          <exon e_start="111158" e_stop="111219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGG</genome_strand>
        <mrna_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGGAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCCAATTGACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339351" ref_strand="+" ref_description="SGN-E339351 [cTOF-4-A3]">
      <seq>ggtttcgaaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108878" stop="111114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109178" g_stop="109552" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="643" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110814" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="672" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E339351" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109178" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTC</genome_strand>
        <mrna_strand>GGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTC-AAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365362" ref_strand="+" ref_description="SGN-E365362 [cLPT-2-D24]">
      <seq>gaaaaccctaccgccgctgctctccttgtacccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggagcaccagatgccggtaacaacaagaggaagtacgatgatcaaacggcaccgtctcctggtccacgtagacctactggattttctgctccgatcgcttccttatcttctcccgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108884" stop="110899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109184" g_stop="109552" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110599" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="586" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E365362" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109184" e_stop="109552"/>
          <exon e_start="110384" e_stop="110599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCTACCGCCGCTGCTCTCCTTTTA-CCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTA</genome_strand>
        <mrna_strand>GAAAACCCTACCGCCGCTGCTCTCCTTGTACCCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGAGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAACGGCACCGTCTCCTGGTCCACGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCCGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722123" ref_strand="+" ref_description="SGN-E722123 [FC16BB07]">
      <seq>aaaaccctaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccaaatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtaaacctactggattttctgctccgatcgcttccttatcttctcctgacggagctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaaccaaaaggctcaggagatcgctgctaggttgttgaatagggctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaatattgaaataccaaatggcagatttggttgtgattataggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108885" stop="110788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109185" g_stop="109552" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110488" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="474" r_length="106" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E722123" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109185" e_stop="109552"/>
          <exon e_start="110384" e_stop="110488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGG-TGTGATTATAGGAAAAG</genome_strand>
        <mrna_strand>AAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAAATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAAACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGAGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAACCAAAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGGGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAATATTGAAATACCAAATGGCAGATTTGGTTGTGATTATAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710601" ref_strand="+" ref_description="SGN-E710601 [FA55DG02]">
      <seq>acaccttaccgccgctgctctccttttaccccaaatctgagcaaatcgaaagcaacaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108888" stop="111131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109186" g_stop="109552" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="636" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110831" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="682" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E710601" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109186" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGAC</genome_strand>
        <mrna_strand>ACACCTTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325479" ref_strand="+" ref_description="SGN-E325479 [cTOC-1-H20]">
      <seq>aaaccctaccgccgctgctctcctttgaccccatatctgagcaaatcgaaagtttcaatggcagaagaagcacagtacggtgcaccagatgccggtaacaacaagaggaagtacgatgatcaagcggcaccgtctcctggtcctcgtagacctactggattttctgctccgatcgcttccttatcttctcctgacggtgctgctcctccttcgtcttacaacaatgttccgccgcctatggatgatttccagttggctaagcagaaggctcaggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="108886" stop="110761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109186" g_stop="109552" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110461" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="445" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E325479" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109186" e_stop="109552"/>
          <exon e_start="110384" e_stop="110461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATG</genome_strand>
        <mrna_strand>AAACCCTACCGCCGCTGCTCTCCTTTGACCCCATATCTGAGCAAATCGAAAGTTTCAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701243" ref_strand="+" ref_description="SGN-E701243 [FA15BG02]">
      <seq>ggagatcgctgctaggttgttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcaggaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgccctctggctggggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="109158" stop="114262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109458" g_stop="109552" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="364" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="457" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="111037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="529" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111158" g_stop="111274" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="646" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113712" g_stop="113962" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="899" r_length="253" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E701243" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109458" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111037"/>
          <exon e_start="111158" e_stop="111274"/>
          <exon e_start="113712" e_stop="113962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATG-CCTCTGGCT-GGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTA</genome_strand>
        <mrna_strand>GGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCCTCTGGCTGGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314716" ref_strand="+" ref_description="SGN-E314716 [cTOA-20-M17]">
      <seq>ttgaatagtgctgaagcgaagaaacctagagttgataataacggcggtggtgccggtggatatgattcctatgaacacaagcccattgttactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaagctgaacagttgattaatgaggttctttctgaggcggattctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="109177" stop="110953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109477" g_stop="109552" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="345" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110796" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="356" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E314716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109477" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGG</genome_strand>
        <mrna_strand>TTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAAGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCGGATTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271116" ref_strand="+" ref_description="SGN-E271116 [cLEM-22-H1]">
      <seq>ataataactgcggtggtgccggtggatatgattgctatgaacacaagccgattggtactccttcagttacaagttcatatggttatccggggcagagcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggtggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaatgctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagtttttcttgaaagtccctaacaacaaggttggtcttgttattggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="109211" stop="111285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109511" g_stop="109552" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831">
            <donor d_prob="0.994" d_score="0.95"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110384" g_stop="110652" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="311" r_length="269" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="404" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110966" g_stop="110985" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="424" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E271116" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109511" e_stop="109552"/>
          <exon e_start="110384" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="110985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAACGTAAGGGTTCTGAGCTTTTTCTAACCTTTTGCTGTTATGGATTTTGTGTTTTCTTTAGTTTGTCTGTTTTTTTTTTCGGACACGAAGTTGAGATTTTTTTTTTAAAATGTAATTTTTTCTGTAATTCTTTGCTGTTAGATATACTGCTCTATTAAATCGAAGTTCATCTTTTACAGATATCGTTAAACCCAATATCGAAATTGTGTTTATATTTGCTTCGATTGATTTAATTAGTTTGTATGGTAGTCAAGTTTACAAGATTTATGAGTTTTCTGTCCTTTTCTGTTATTGATTTTGTGGTGCTGGTTTTTTGAGATGGAGGTGAGATGTTTTTTTTAAATAAAAAGATGTATTTTCTCACTGAAATTCTTTTCCATTTGGATACAAGTATTTTAATTTGTTATTTACAGGTATCCTTGTATCTTATACATCCCGTTGTAGTATTTTTTTATATATCCAAATGTTGTTGGTGGATTTGATTCCTCAAGGGTTTACTTTCTTTTGTTGTTGTTGATTTGTGTTTATGCCTTTTTTGCTGTGGGAGAACTATTTTCACGGATTGATTTTTTTTTATAATTAATGAAGTGTTGTTCTATTGCTTATTGTTATTGTAATTTTCACCTTCTTCTATACCTGACCAAAAATAATCTGTTCACAAAATATTGATGATGAAATACAATTATCCATACCGAATTCATGTTTGTAATTGGCTACCACTGATGTGATTAGTTGGCAAGGTAGTAGGGTTTTAGCTTTTACTATGATAGCAATTCTGGTTCGTTTTAAGATCTTGTTGAGATGTTAAATATTTGTGGCTTTTCTTGACCGCAGACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAA</genome_strand>
        <mrna_strand>ATAATAACTGCGGTGGTGCCGGTGGATATGATTGCTATGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCCGATTGGTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAATGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTTCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278012" ref_strand="+" ref_description="SGN-E278012 [cLER-4-J3]">
      <seq>agcaagaagattgaaataccaaatggcagagttggtgtgattataggaaaaggcggggagaccatcaagtatcttcaactccagtctggagccaaaattcaggttactagagacatggatgctgatcctaattctcaaaacagagcagttgaactcatgggtactccagaccaaattgctaaggctgaacagttgattaatgaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="110137" stop="114678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110437" g_stop="110640" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110641" i_stop="114060" i_length="3420">
            <donor d_prob="0.235" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114061" g_stop="114378" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="522" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E278012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110437" e_stop="110640"/>
          <exon e_start="114061" e_stop="114378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTT</genome_strand>
        <mrna_strand>AGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGCGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251326" ref_strand="+" ref_description="SGN-E251326 [cLEG-10-P20]">
      <seq>cagaccaaattgctaaggctgaacagttgattaatgaggttctttctgaggccgattctggtggttctggtctagtttcccgaagattacctggacagcaatctggaggggaacagttttccttgaaagtccctaacaacaaggttggtcttgttattggaaaaggaggtgaaactataaaaagtatgcaggcaagaactggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcangaaagaacagtccaaattgacgggtcaagtgaacagaattgaggctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="110303" stop="111544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110603" g_stop="110652" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110786" g_stop="110878" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="143" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110966" g_stop="111037" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="215" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111158" g_stop="111244" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="303" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E251326" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110603" e_stop="110652"/>
          <exon e_start="110786" e_stop="110878"/>
          <exon e_start="110966" e_stop="111037"/>
          <exon e_start="111158" e_stop="111244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAGGTACCAGTCTTTGATACTTAAGAGTGTCAAACTCCAGTAATTCTTTTGTTGAATTATATCCATTTTCTCATGCTTTCGACCATTAATTGATCTGTTTTTAGTTTGTTAATAATGCATCATGTATCTGATACAGGCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAGGTGAGATTTAGTGTTGTAGTTTAATTACTAGTCTCGCAGTCAGCTTTCTACTATTTGTCTCATGTGTATTGGTATGTGTTTTATTAGGTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAG-ATTGAGGCTGCT</genome_strand>
        <mrna_strand>CAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG.....................................................................................................................................GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG.......................................................................................GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCANGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGAATTGAGGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331794" ref_strand="+" ref_description="SGN-E331794 [cTOD-7-C4]">
      <seq>tcagttcggattgcaggctgcaagaacgggagcgcgtattcaggtgatccctttgcacttgcctcctggtgacacatcgcaggaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="110714" stop="114418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111014" g_stop="111037" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="43" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111158" g_stop="111274" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="160" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113712" g_stop="114118" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="567" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E331794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111014" e_stop="111037"/>
          <exon e_start="111158" e_stop="111274"/>
          <exon e_start="113712" e_stop="114118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAACTGGAGCGCGTATTCAGGTAACTTCAAAATTCTTTCCCACTTATCTTTTATGAATACTTACAGTCCTTTGCACTGTGAAAAGCAATTATTTCTGGAGATTTTATTCCAGCTCTCTTATCTTTCCTACTTTGTCACAGGTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGC</genome_strand>
        <mrna_strand>GCAAGAACGGGAGCGCGTATTCAG........................................................................................................................GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246936" ref_strand="+" ref_description="SGN-E246936 [cLEF-41-J22]">
      <seq>aggaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="110895" stop="114429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111195" g_stop="111274" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113712" g_stop="114129" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="498" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E246936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111195" e_stop="111274"/>
          <exon e_start="113712" e_stop="114129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTG</genome_strand>
        <mrna_strand>AGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703402" ref_strand="+" ref_description="SGN-E703402 [FA21BF02]">
      <seq>gaaagaacagtccaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcangctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaagctcaaaaacctcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="110897" stop="114758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111197" g_stop="111274" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113712" g_stop="114458" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="825" r_length="747" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E703402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111197" e_stop="111274"/>
          <exon e_start="113712" e_stop="114458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACT</genome_strand>
        <mrna_strand>GAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCANGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAAGCTCAAAAACCTCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740365" ref_strand="+" ref_description="SGN-E740365 [LC21AE09]">
      <seq>ctctaaattgacgggtcaagtgaacagattgaggctgctaagcagctggtgtatgaagtaattagcgagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcangcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccaacgcaacccgggtatcctcaacccactgctcaacctcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="110907" stop="114866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111206" g_stop="111274" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113712" g_stop="114566" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="924" r_length="855" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E740365" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111206" e_stop="111274"/>
          <exon e_start="113712" e_stop="114566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAGGTATGTGTAATTGGATATCACTTTCTATTCTTTCCTTGTTGCGAGAATATAATAGGCAGCAAAGGCAGATGAATGCTTGCCTCAAGATGATGCATTTAATCTCCTTCAAATTTTGAGCAGTCTATATTTGTATGTTATTTGTTGTTTGTAATTTGTAACTGTGTGTGTATCTTGCATGTTGCATGTTGTGGAAGACTGTGCTTTATACCTTTAGTCCTTCAAGAGTTGCTTTTTGTAGTTCTCCTGATCCTGAATGTTCAAATTTCATCTCTTAGCATCTTCAAGAGGCAGTGGTATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAATTTGTAGGCTTAGTATGTATTGGACAATGGTGACACCAACATGGAACCATAAGTGTTGGTGTTCCCTCAGCATTGTTCTGGTATGGTCTTCAACCTAATTATTGATTAACTAATGTCATATACTGGGAGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCA</genome_strand>
        <mrna_strand>CTCTAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCANGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAACGCAACCCGGGTATCCTCAACCCACTGCTCAACCTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738196" ref_strand="+" ref_description="SGN-E738196 [LC12CH10]">
      <seq>attatattttttcagcagtggtgaaatttgctgacacattaagttacagtttactttgttgctagagcatcatgaatgagaaattaataatccaatatatgacttcattaggatcttcatgatctgtatctgcaagtttcatgtatgtgtgttgctgtcaattacctatatccgtccttgcatcgctagaattcatagtgtttgcagatcattttgccagtcctcttcttggtcgacagcgtcagttaatgggaattctagttcatgtcagtgacccctggatgaaggagattggctcttgctgtgcttcattttttggaaggaagtattcttattaatattggagatatgctttctagttgcaaagtaggtctttgcgagtattttgctccactcttaactatagctccattactttaaatagaaggattaatagattgttatccacataatatatctgtaatgtgacatgacacctacatatgtcaaccttttttcccatcagttctttttaattagttggatgttgctggagcaagagatcagtttctaacccaaggcattatcaggtttaagatgacttatcaaaatgtttagttgcctcaatgtctattgatctatatttcattggactttagatgttgtgatttttgtgaggcgcaggttttggggaggttctccttgaaggtaactaagtctgtctaaaaattttccgtaatattgaggatatattataatctgagatgtgcaataactcttggtttaatggtttgggtacttggttaatatcaagagacaacatataactattctggttaattttgtatctgatcactgatattattattggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="111270" stop="112723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111570" g_stop="112423" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E738196" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111570" e_stop="112423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTA-ATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAAT</genome_strand>
        <mrna_strand>ATTATATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347159" ref_strand="+" ref_description="SGN-E347159 [cTOF-25-A22]">
      <seq>agtaaatgagggactgattttgctaggatttgcaatggaggaaactaagatttgttgagatttatcattgttatcttttaggtgtcaatcttgagatattatatgaatgtactacataagtgttgtaacaaagagtgtttggtgtaattatctattgttgatgtcattactcagccagggggcaacttttttgtgccttgggattttctagtgctttatttggtttctctcaagaaaaatccattactttcattactaagccactagtatctgattttccctttctccatagaccttttagtcatggctatgaagatcgaacttcctttgaggtttggagtgctttaaggatcattagtatgtcagttctgtgtgttcacgtcttgattcttagcagtactgttaggttcgcatttcttattatcaaaaaatggaatcattgcccttcaagtgtgatgtggcatgtaggaatctgctttctggcggtgttaataatgacatctattatcactctgtggttttccttgtttttggtgtccctgtggtccaactcttccgaacccaattcacggagtgatagctggtcttcgaacttnaagtgcactgctcttgctgctttgcgacacatcatatttattcttatattgaagtttgtcgtttctctaattcgcatgtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="112250" stop="113532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112550" g_stop="113232" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E347159" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112550" e_stop="113232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTG</genome_strand>
        <mrna_strand>AGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACTTNAA-GTGCACTGCTCTTGCTGCTTTGCG-ACACATCATATTTATTCTT-ATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200952" ref_strand="+" ref_description="SGN-E200952 [cLEC-5-A19]">
      <seq>tagtgttgcaacaaagagtgtttggtgtaattatctattgttgatgtcattactcagccagggggcaacttttttgtgccttgggattttctagggctttatttggtttctctcaagaacaatccattactttcattactaagccactagtatctgattttgcctttctccatagaccatttagtcatggctatgaagatcgaacttcctttgaggtttggagtgcttgaaggatcattaatatgtcagttctgtgtgttcacgtcttgattcttagcagtgctgttaggctcgcatctcttattatcaaacaatggaatcattgcccttcaagtgtgatgtggcatgtatgaatctgctttctggcggcgttaataatgacatctattatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="112368" stop="113360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112667" g_stop="113060" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E200952" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112667" e_stop="113060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCAC</genome_strand>
        <mrna_strand>TAGTGTTGCAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGGGCTTTATTTGGTTTCTCTCAAGAACAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTGCCTTTCTCCATAGACCATTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTGAAGGATCATTAATATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTGCTGTTAGGCTCGCATCTCTTATTATCAAACAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTATGAATCTGCTTTCTGGCGGCGTTAATAATGACATCTATTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332674" ref_strand="+" ref_description="SGN-E332674 [cTOD-18-L22]">
      <seq>ttgttgatgtcattactcagccagggggcaacttttttgtgccttgggattttctagtgctttatttggtttctctcaagaaaaatccattactttcattactaagccactagtatctgattttccctttctccatagaccttttagtcatggctatgaagatcgaacttcctttgaggtttggagtgctttaaggatcattagtatgtcagttctgtgtgttcacgtcttgattcttagcagtactgttaggttcgcatttcttattatcaaaaaatggaatcattgcccttcaagtgtgatgtggcatgtaggaatctgctttctggcggtgttaataatgacatctattatcactctgtggttttccttgtttttggtgtccctgtggtccaactcttccgaacccaattcacggagtgatagctggtcttcgaacctcaaggtgcactgctcttgctgctttgcgaacacatcatatttattcttaatattgaagtttgtcgtttctctaattcgcatgtcattgaaacagttatacaacttctctgggtatataaatttgaatacaccatatcattattatataaaattctctgcttatgacatataatgaacagattactacatcatattattattggtaaagtcccttggcttatagtggttccttggtcatnctatagtggtatcttgctatcttaagaagtatcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="112404" stop="113721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112704" g_stop="113421" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E332674" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112704" e_stop="113421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCC</genome_strand>
        <mrna_strand>TTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATNCTATAGTGGTATCTTGCTATCTTAAGAAGTATCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302207" ref_strand="+" ref_description="SGN-E302207 [cLEW-19-M11]">
      <seq>ttagtatgtcagttctgtgtgttcacgtcttgattcttagcagtactgttaggttcgcatttcttattatcaaaaaatggaatcattgcccttcaagtgtgatgtggcatgtaggaatctgctttctggcggtgttaataatgacatctattatcactctgtggttttccttgtttttggtgtccctgtggtccaactcttccgaacccaattcacggagtgatagctggtcttcgaacctcaaagtgcactgctcttgctgctttgcgaacacatcatatttattcttaatattgaagtttgtcgtttctctaattcgcatgtcattgaaacagttatacaacttctctgggtatataaatttgaatacaccatatcattattatataaaattctctgcttatgacatataatgaacagattactacatcatattattattggtaaagtcccttggcttatagtggttccttggtcatcttatagtggtatcttgctatcttaagagttatcttgcctacatatagaatgtttttgttttttgcttttttgcttttgtatccttcacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="112604" stop="113776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112904" g_stop="113476" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E302207" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112904" e_stop="113476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAA</genome_strand>
        <mrna_strand>TTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAAGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697677" ref_strand="+" ref_description="SGN-E697677 [FA03DB06]">
      <seq>ccgattctctgcttatgacatataatgaacagattactacatcatattattattggtaaagtcccttggcttatagtggttccttggtcatcttatagtggtatcttgctatcttaagagttatcttgcctacatatagaatgtttttgttttttgcttttttgcttttgtatccttcacttcaaatagggtgaggatgagcatctgccaggagttttgtacctcccaaccagtaagtcttacatctgtcttgatgcatacctaatattaattgttatatgtttgtggtataagttactgtttcatctgctatgattatgctacctgggtgtggcttagtctgcccttgcaatgtgagttatttaaatatgcttgaatcaatcatattcttggttagtttagacgacaattcttgtgcagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttaccaaccagcaacctgcctcaggttacggtcaaggacaagcttatgccccaggatggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="112995" stop="114397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113292" g_stop="114097" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E697677" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113292" e_stop="114097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTA-CAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATG-CCCAGGATGGCTA</genome_strand>
        <mrna_strand>CCGATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACCAACCAGCAACCTGCCTCAGGTTACGGTCAAGGACAAGCTTATGCCCCAGGATGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697596" ref_strand="+" ref_description="SGN-E697596 [FA03CB05]">
      <seq>cgattctctgcttatgacatataatgaacagattactacatcctattattattggtaaagtcccttggcttatagtggttccttggtcatcttatagtggtatcttgctatcttaagagttatcttgcctacatatagaatgtttttgttttttgcttttttgcttttgtatccttcacttcaaatagggtgaggatgagcatctgccaggagttttgtacctcccaaccagtaagtcttacatctgtcttgatgcatacctaatattaattgttatatgtttgtggtataagttactgtttcatctgctatgattatgctacctgggtgtggcttagtctgcccttgcaatgtgagttatttaaatatgcttgaatcaatcatattcttggttagtttagacgacaattcttgtgcagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttccactgataataatgcctatggttacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="112995" stop="114344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113293" g_stop="114044" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E697596" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113293" e_stop="114044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAAC</genome_strand>
        <mrna_strand>CGATTCTCTGCTTATGACATATAATGAACAGATTACTACATCCTATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCCACTGATAATAATGCCTATGGTTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729426" ref_strand="+" ref_description="SGN-E729426 [LA21AB03]">
      <seq>gaggtctatacgacaattcttgtgcagaatcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcangctcaaaaacctcctactcangcaagctatgggtcaccacagcagtctcctagtgcacaagctggttatgcccagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113388" stop="114819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113685" g_stop="114519" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="835" r_length="835" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E729426" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113685" e_stop="114519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTG</genome_strand>
        <mrna_strand>GAGGTCTATACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCANGCTCAAAAACCTCCTACTCANGCAAGCTATGGGTCACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701705" ref_strand="+" ref_description="SGN-E701705 [FA16CH04]">
      <seq>atcgtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcangcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcangttatgcccaggctgatcccaacgcccagcgaactccctcttctgcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113413" stop="114917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113713" g_stop="114617" g_length="905"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="905" r_length="905" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E701705" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113713" e_stop="114617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATAT</genome_strand>
        <mrna_strand>ATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCANGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCANGTTATGCCCAGGCTGATCCCAACGCCCAGCGAACTCCCTCTTCTGCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705311" ref_strand="+" ref_description="SGN-E705311 [FA26DA11]">
      <seq>gtgctaggaatcaagggatgtcgggaggatatcaacagggttatcaggcccggcctcctacaagctgggcccctcctggtgcacctatgcaacaatctggttatggctatggtcagcctggtgcatatccttctcaaccatcttaccctggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcangcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcangttatgcccaggctgatcccaacgcccagcgacctccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113416" stop="114908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113716" g_stop="114608" g_length="893"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="893" r_length="893" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E705311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113716" e_stop="114608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCT</genome_strand>
        <mrna_strand>GTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCANGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCANGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272286" ref_strand="+" ref_description="SGN-E272286 [cLEM-19-J15]">
      <seq>tatggtcagcctggtgcatatccttctcaaccatcttaccgtggctaccctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113523" stop="114637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113823" g_stop="114337" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E272286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113823" e_stop="114337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATC</genome_strand>
        <mrna_strand>TATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCGTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706667" ref_strand="+" ref_description="SGN-E706667 [FA30CD06]">
      <seq>cctcctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113571" stop="115050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113871" g_stop="114750" g_length="880"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="880" r_length="880" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E706667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113871" e_stop="114750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</genome_strand>
        <mrna_strand>CCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370283" ref_strand="+" ref_description="SGN-E370283 [TUS-28-C13]">
      <seq>ctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113575" stop="114822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113875" g_stop="114522" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E370283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113875" e_stop="114522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCC</genome_strand>
        <mrna_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318621" ref_strand="+" ref_description="SGN-E318621 [cTOB-9-L11]">
      <seq>ctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacacgcttatgcccaggatgggtatggaggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctgaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctacaccatcatcagccacagctgaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113575" stop="114734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113875" g_stop="114434" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E318621" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113875" e_stop="114434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCT</genome_strand>
        <mrna_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACACGCTTATGCCCAGGATGGGTATGGAGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTGAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTACACCATCATCAGCCACAGCTGAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270671" ref_strand="+" ref_description="SGN-E270671 [cLEM-6-E12]">
      <seq>ctcaacctgcctctgctggatatgcctctggctgggatcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113575" stop="114469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113875" g_stop="114165" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E270671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113875" e_stop="114165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAG</genome_strand>
        <mrna_strand>CTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326607" ref_strand="+" ref_description="SGN-E326607 [cTOC-17-C17]">
      <seq>tcagagtggtgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagacctaatcctagctacccatctcaaggctctgctcaagctggatatggggtgcccccaacttctcgaggtgggtatggtacacagccagctggaggctatgctgctacttatggggctcctcaggctcaaagacctcctactcaggcaagctatggtcaaccacagcagactcctaggccacaagctggttatgctcagcctgcaccatcgcaacccgggtatcctcaaccagctgctccagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113612" stop="114909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113912" g_stop="114609" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E326607" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113912" e_stop="114609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTT</genome_strand>
        <mrna_strand>TCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGACCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAAGCTGGATATGGGGTGCCCCCAACTTCTCGAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTACTTATGGGGCTCCTCAGGCTCAAAGACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGACTCCTAGGCCACAAGCTGGTTATGCTCAGCCTGCACCATCGCAACCCGGGTATCCTCAACCAGCTGCTCCAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697578" ref_strand="+" ref_description="SGN-E697578 [FA03BH03]">
      <seq>cgctcaaaatcaacaatctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcaaccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113622" stop="114997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113921" g_stop="114697" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E697578" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113921" e_stop="114697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTA</genome_strand>
        <mrna_strand>CGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAACCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697841" ref_strand="+" ref_description="SGN-E697841 [FA04BH01]">
      <seq>cccattctcaggcaggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113634" stop="114563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113932" g_stop="114263" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E697841" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113932" e_stop="114263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCT</genome_strand>
        <mrna_strand>CCCATTCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706326" ref_strand="+" ref_description="SGN-E706326 [FA29CF05]">
      <seq>caggagggtatgattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113644" stop="115045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113944" g_stop="114745" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E706326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113944" e_stop="114745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGA</genome_strand>
        <mrna_strand>CAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699877" ref_strand="+" ref_description="SGN-E699877 [FA11BH03]">
      <seq>gattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113655" stop="115042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113955" g_stop="114742" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="788" r_length="788" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E699877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113955" e_stop="114742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTC</genome_strand>
        <mrna_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729038" ref_strand="+" ref_description="SGN-E729038 [LA19DB03]">
      <seq>gattactacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaaacaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113655" stop="115006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113955" g_stop="114706" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E729038" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113955" e_stop="114706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGC</genome_strand>
        <mrna_strand>GATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAAACAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248137" ref_strand="+" ref_description="SGN-E248137 [cLEF-55-E19]">
      <seq>tacaaccaacaggctccacaacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaagttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcaaggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaagctctgctcaagctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113661" stop="114729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113961" g_stop="114429" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E248137" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113961" e_stop="114429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATG</genome_strand>
        <mrna_strand>TACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAAGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAAGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAAGCTCTGCTCAAGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260946" ref_strand="+" ref_description="SGN-E260946 [cLEG-55-N7]">
      <seq>aacaacagcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctcccttacacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113680" stop="115050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113980" g_stop="114750" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="771" r_length="771" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E260946" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113980" e_stop="114750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</genome_strand>
        <mrna_strand>AACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCCTTACACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260924" ref_strand="+" ref_description="SGN-E260924 [cLEG-55-F9]">
      <seq>gcagcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaggttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113687" stop="114809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113987" g_stop="114509" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E260924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113987" e_stop="114509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTAT</genome_strand>
        <mrna_strand>GCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275685" ref_strand="+" ref_description="SGN-E275685 [cLEN-18-D17]">
      <seq>gcaagctgctggaggttcagctgcttcaactgataatagtgcctatggttacaaccagcaacctgcctcaagttacagtcaaggacaagcttatgcccaggatggctatggtggatatcatgtacctgcccctcattctggtgggtatcaaggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113690" stop="114640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113990" g_stop="114340" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E275685" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113990" e_stop="114340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCA</genome_strand>
        <mrna_strand>GCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAAGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAAGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713729" ref_strand="+" ref_description="SGN-E713729 [FB09BH11]">
      <seq>ccgtacctgcccctcattctggtgggtatcagggttctggttatgagcagcaacaaggctatagctctactgctggctatgggaatgcctcaaacccaacatcagacggccagaactcgtcgtatggtgcccaaactgatggcagtcaagcacctccaccagcatcagccacagctcaacaaggatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctaattatggacagcagccacctccttacaaaaacgcctatggtgcttactcccagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113811" stop="115028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114109" g_stop="114728" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E713729" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114109" e_stop="114728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCA</genome_strand>
        <mrna_strand>CCGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAATTATGGACAGCAGCCACCTCCTTACAAAAACGCCTATGGTGCTTACTCCCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370282" ref_strand="+" ref_description="SGN-E370282 [TUS-28-C13](-)">
      <seq>agcatcagccacagctcaacaagaatatcattctggccagcagcccagccctaatcctagctacccatctcaaggctctgctcaggctggatatggggtgcccccaacttctcaaggtgggtatggtacacagccagctggaggctatgctgctagttatggggctcctcaggctcaaaaacctcctactcaggcaagctatggtcaaccacagcagtctcctagtgcacaagctggttatgcccagcctgccccagcgcaacccgggtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="113969" stop="115270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114269" g_stop="114969" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E370282" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114269" e_stop="114969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTT</genome_strand>
        <mrna_strand>AGCATCAGCCACAGCTCAACAAGAATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229859" ref_strand="+" ref_description="SGN-E229859 [cLEL-33-P23](-)">
      <seq>gtatcctcaaccagctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114236" stop="115240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114536" g_stop="114939" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="421"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E229859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114536" e_stop="114939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</genome_strand>
        <mrna_strand>GTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390265" ref_strand="+" ref_description="SGN-E390265 [TUS-40-I3]">
      <seq>agctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114248" stop="115280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114548" g_stop="114981" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E390265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114548" e_stop="114981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390481" ref_strand="+" ref_description="SGN-E390481 [TUS-40-I3](-)">
      <seq>agctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114248" stop="115280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114548" g_stop="114981" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E390481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114548" e_stop="114981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>AGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312948" ref_strand="+" ref_description="SGN-E312948 [cTOA-14-K13]">
      <seq>gctgctcaagctcaatcaggttatgcccaggctgatcccaacgcccagcgacctccctcttctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcggttaagtagttttatctttcgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114249" stop="115280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114549" g_stop="114981" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="443"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E312948" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114549" e_stop="114981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>GCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGGTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230359" ref_strand="+" ref_description="SGN-E230359 [cLEL-33-P23](-)">
      <seq>ctgcatatggtgctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114310" stop="115240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114610" g_stop="114939" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="347"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E230359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114610" e_stop="114939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</genome_strand>
        <mrna_strand>CTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698233" ref_strand="+" ref_description="SGN-E698233 [FA05CG02]">
      <seq>gctccaccagctcagccaggttatggtgcccagtcttatggcgctccgcctagttatggacagcagccacctccttacaacagcgcctatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114321" stop="115236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114621" g_stop="114936" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E698233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114621" e_stop="114936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCC</genome_strand>
        <mrna_strand>GCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E220967" ref_strand="+" ref_description="SGN-E220967 [cLEL-22-G1](-)">
      <seq>agccacctccttacgacagcgcttatggaggttactgccaacatctagcatatgcttttgaagcagctccacctgcgcagtgtgttccccctagtggtgtggttgtcaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcgtttaaaagcaatttctagcttttgttggttagttatcattaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114427" stop="115280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114685" g_stop="114981" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="314"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E220967" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114685" e_stop="114981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>AGCCACCTCCTTACGACAGCGCTTATGGAGGTTACTGCCAACATCTAGCATATGCTTTTGAAGCAGCTCCACCTGCGCAGTGTGTTCCCCCTAGTGGTGTGGTTGTCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCGTTTAAAAGCAATTTCTAGCTTTTGTTGGTTAGTTATCATTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230046" ref_strand="+" ref_description="SGN-E230046 [cLEL-33-K6](-)">
      <seq>tatggtgcttactcccagccacaagcatatgcttctgaagcagctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114408" stop="115280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114708" g_stop="114981" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="290"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E230046" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114708" e_stop="114981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCC</genome_strand>
        <mrna_strand>TATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230158" ref_strand="+" ref_description="SGN-E230158 [cLEL-33-C7](-)">
      <seq>ctccaactgcgcagtctgttccacctagtggtggggttgccaaagcttcacctccgagttaatatcagtctctttcgtatgtttttgggtgaatcttttaaaaacaatttcttgcttttgttgcttagttatctttaggttttgtagattatcaaacagtgttttaaactgtagtttgtttgtccccgtatttggattgcgtatcgtttaagtagttttatctttcgttccgttgggtgtgttctcgagtaaagtacctatggtgttgccatgttaaccccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D15-ppy0V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D15.1" temp_strand="+" temp_description="C12HBa0216D15.1  AC235605.2 htgs_phase:2 submitted_to_sgn_as:gi|238909032|gb|AC235605.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D15, WORKING DRAFT SEQUENCE, 5 ordered pieces">
        <position start="114451" stop="115325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114751" g_stop="115026" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="301"/>
      <MATCH_line gen_id="C12HBa0216D15.1" gen_strand="+" ref_id="SGN-E230158" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114751" e_stop="115026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</genome_strand>
        <mrna_strand>CTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>223</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1645" PGL_stop="11247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1662" e_stop="1803"/>
            <exon e_start="1881" e_stop="1978"/>
            <exon e_start="2835" e_stop="2867"/>
            <exon e_start="4534" e_stop="4763"/>
            <exon e_start="4828" e_stop="4843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.582" e_score="1.000"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1662" e_stop="1803" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1881" e_stop="1978" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2835" e_stop="2867" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4534" e_stop="4763" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.582">
            <gDNA_intron_boundary i_start="4764" i_stop="4827" i_length="64"/>
          </intron>
          <exon e_serial="5" e_score="0.562">
            <gDNA_exon_boundary e_start="4828" e_stop="4843" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1662" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1666" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1689" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
              <exon start="4828" stop="4843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1692" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1712" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1712" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1787" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
              <exon start="4828" stop="4843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1911" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA : AAGTAGGAAACTGAAA</gDNA_template>
            <first_frame> H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L  S  T  L  *  Y  R  I  W  L  N  I  K  R  N  E  *  C  P  F  I  H  G  A  N  K  Y  I  V  D  F  I  * :   S  R  K  L  K </first_frame>
            <second_frame>  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  W :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  R  R  C  N  I  E  Y  G  *  I  S  N  E  M  N  N  V  L  L  S  M  E  L  I  N  I  L  W  I  L  Y   : K  V  G  N  *   </second_frame>
            <third_frame>   *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : G  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F  D  V  V  I  S  N  M  V  E  Y  Q  T  K  *  I  M  S  F  Y  P  W  S  *  *  I  Y  C  G  F  Y  I  :  K  *  E  T  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1673" stop="1803"/>
                    <exon start="1881" stop="1978"/>
                    <exon start="2835" stop="2867"/>
                    <exon start="4534" stop="4613"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAQWMPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1645" e_stop="1803"/>
            <exon e_start="1881" e_stop="1978"/>
            <exon e_start="2835" e_stop="2867"/>
            <exon e_start="4534" e_stop="4763"/>
            <exon e_start="7918" e_stop="7953"/>
            <exon e_start="8775" e_stop="8805"/>
            <exon e_start="11161" e_stop="11245"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.075" e_score="0.778"/>
          <exon-intron don_prob="0.506" acc_prob="0.000" e_score="0.548"/>
          <exon-only e_score="0.494"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1645" e_stop="1803" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1881" e_stop="1978" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2835" e_stop="2867" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4534" e_stop="4763" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4764" i_stop="7917" i_length="3154"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="7918" e_stop="7953" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.534" acc_prob="0.075">
            <gDNA_intron_boundary i_start="7954" i_stop="8774" i_length="821"/>
          </intron>
          <exon e_serial="6" e_score="0.548">
            <gDNA_exon_boundary e_start="8775" e_stop="8805" e_length="31"/>
          </exon>
          <intron i_serial="6" don_prob="0.506" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8806" i_stop="11160" i_length="2355"/>
          </intron>
          <exon e_serial="7" e_score="0.494">
            <gDNA_exon_boundary e_start="11161" e_stop="11245" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1645" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
              <exon start="7918" stop="7953"/>
              <exon start="8775" stop="8805"/>
              <exon start="11161" stop="11245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1662" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1666" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1692" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1712" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1712" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1911" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA : AAATGAAAAAATAAAAAAAGTTAAAAAACAAGAAAA : AAATAGAGAAAACAAATTGAATAAGTGACAC : CAACAATTTGCTTTTGCTCTATTCTATTGACATATTCAAAAAAACGAGAAAATGCAGGGGAAAATCCTTAATCAACGGTTCCAAT</gDNA_template>
            <first_frame> C  L  F  S  T  P  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  W :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  R  R  C  N  I  E  Y  G  *  I  S  N  E  M  N  N  V  L  L  S  M  E  L  I  N  I  L  W  I  L  Y   : K  M  K  K  *  K  K  L  K  N  K  K   : K  I  E  K  T  N  *  I  S  D  T :   N  N  L  L  L  L  Y  S  I  D  I  F  K  K  T  R  K  C  R  G  K  S  L  I  N  G  S  N </first_frame>
            <second_frame>  A  Y  F  L  R  P  *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : G  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F  D  V  V  I  S  N  M  V  E  Y  Q  T  K  *  I  M  S  F  Y  P  W  S  *  *  I  Y  C  G  F  Y  I  :  K  *  K  N  K  K  S  *  K  T  R  K  :  K  *  R  K  Q  I  E  *  V  T   : P  T  I  C  F  C  S  I  L  L  T  Y  S  K  K  R  E  N  A  G  E  N  P  *  S  T  V  P   </second_frame>
            <third_frame>   L  I  F  Y  A  H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L  S  T  L  *  Y  R  I  W  L  N  I  K  R  N  E  *  C  P  F  I  H  G  A  N  K  Y  I  V  D  F  I  * :   N  E  K  I  K  K  V  K  K  Q  E  K :   N  R  E  N  K  L  N  K  *  H  :  Q  Q  F  A  F  A  L  F  Y  *  H  I  Q  K  N  E  K  M  Q  G  K  I  L  N  Q  R  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1673" stop="1803"/>
                    <exon start="1881" stop="1978"/>
                    <exon start="2835" stop="2867"/>
                    <exon start="4534" stop="4613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAQWMPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="1645" e_stop="1803"/>
            <exon e_start="1881" e_stop="1978"/>
            <exon e_start="2835" e_stop="2867"/>
            <exon e_start="4534" e_stop="4763"/>
            <exon e_start="5719" e_stop="5727"/>
            <exon e_start="7922" e_stop="7953"/>
            <exon e_start="8775" e_stop="8805"/>
            <exon e_start="9885" e_stop="9932"/>
            <exon e_start="11218" e_stop="11247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.778"/>
          <exon-intron don_prob="0.534" acc_prob="0.075" e_score="0.781"/>
          <exon-intron don_prob="0.506" acc_prob="0.000" e_score="0.548"/>
          <exon-intron don_prob="0.341" acc_prob="0.536" e_score="0.583"/>
          <exon-only e_score="0.567"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1645" e_stop="1803" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1804" i_stop="1880" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1881" e_stop="1978" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1979" i_stop="2834" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2835" e_stop="2867" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2868" i_stop="4533" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4534" e_stop="4763" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="4764" i_stop="5718" i_length="955"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="5719" e_stop="5727" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5728" i_stop="7921" i_length="2194"/>
          </intron>
          <exon e_serial="6" e_score="0.781">
            <gDNA_exon_boundary e_start="7922" e_stop="7953" e_length="32"/>
          </exon>
          <intron i_serial="6" don_prob="0.534" acc_prob="0.075">
            <gDNA_intron_boundary i_start="7954" i_stop="8774" i_length="821"/>
          </intron>
          <exon e_serial="7" e_score="0.548">
            <gDNA_exon_boundary e_start="8775" e_stop="8805" e_length="31"/>
          </exon>
          <intron i_serial="7" don_prob="0.506" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8806" i_stop="9884" i_length="1079"/>
          </intron>
          <exon e_serial="8" e_score="0.583">
            <gDNA_exon_boundary e_start="9885" e_stop="9932" e_length="48"/>
          </exon>
          <intron i_serial="8" don_prob="0.341" acc_prob="0.536">
            <gDNA_intron_boundary i_start="9933" i_stop="11217" i_length="1285"/>
          </intron>
          <exon e_serial="9" e_score="0.567">
            <gDNA_exon_boundary e_start="11218" e_stop="11247" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1645" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
              <exon start="5719" stop="5727"/>
              <exon start="7922" stop="7953"/>
              <exon start="8775" stop="8805"/>
              <exon start="9885" stop="9932"/>
              <exon start="11218" stop="11247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1662" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1665" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1666" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1692" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1711" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1712" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1712" stop="1803"/>
              <exon start="1881" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1911" stop="1978"/>
              <exon start="2835" stop="2867"/>
              <exon start="4534" stop="4763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA : ACAAAGAAA : GAAAAAATAAAAAAAGTTAAAAAACAAGAAAA : AAATAGAGAAAACAAATTGAATAAGTGACAC : CTACTACTCTTGACAGAGTGACCCAAAATAGAGCTGTGGTTTAAAGTG : GGGAAAATCCTTAATCAACGGTTCCAATAT</gDNA_template>
            <first_frame> C  L  F  S  T  P  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  W :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  R  R  C  N  I  E  Y  G  *  I  S  N  E  M  N  N  V  L  L  S  M  E  L  I  N  I  L  W  I  L  Y   : N  K  E   : R  K  N  K  K  S  *  K  T  R  K  :  K  *  R  K  Q  I  E  *  V  T   : P  T  T  L  D  R  V  T  Q  N  R  A  V  V  *  S   : G  E  N  P  *  S  T  V  P  I  </first_frame>
            <second_frame>  A  Y  F  L  R  P  *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : G  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F  D  V  V  I  S  N  M  V  E  Y  Q  T  K  *  I  M  S  F  Y  P  W  S  *  *  I  Y  C  G  F  Y  I  :  T  K  K  :  E  K  I  K  K  V  K  K  Q  E  K :   N  R  E  N  K  L  N  K  *  H  :  L  L  L  L  T  E  *  P  K  I  E  L  W  F  K  V  :  G  K  I  L  N  Q  R  F  Q  Y </second_frame>
            <third_frame>   L  I  F  Y  A  H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L  S  T  L  *  Y  R  I  W  L  N  I  K  R  N  E  *  C  P  F  I  H  G  A  N  K  Y  I  V  D  F  I  * :   Q  R  K :   K  K  *  K  K  L  K  N  K  K   : K  I  E  K  T  N  *  I  S  D  T :   Y  Y  S  *  Q  S  D  P  K  *  S  C  G  L  K  W :   G  K  S  L  I  N  G  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1673" stop="1803"/>
                    <exon start="1881" stop="1978"/>
                    <exon start="2835" stop="2867"/>
                    <exon start="4534" stop="4613"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAQWMPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6255" PGL_stop="5452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6255" e_stop="5976"/>
            <exon e_start="5864" e_stop="5735"/>
            <exon e_start="5656" e_stop="5452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.801" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="6255" e_stop="5976" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="5975" i_stop="5865" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5864" e_stop="5735" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.801">
            <gDNA_intron_boundary i_start="5734" i_stop="5657" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="5656" e_stop="5452" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6255" stop="5976"/>
              <exon start="5864" stop="5735"/>
              <exon start="5656" stop="5452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG : TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG : AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGT</gDNA_template>
            <first_frame> R  K  G  M  D  H  I  H  I  Q  I  L  M  Q  S  L  R  E  F  Y  I  I  T  K  Q  E  V  Q  I  L  L  Q  L  G  I  L  Q  V  L  V  I  S  K  H  Q  L  E  L  I  L  D  *  V  M  *  C  W  K  M  K  R  R  L  K  S  G  Q  H  K  W  S  L  E  F  R  L  L  L  I  L  F  L  M  V  E  M  I  L  K  E  S  D  L   : V  G  T  C  S  T  N  G  K  L  K  D  G  G  V  K  I  M  T  E  L  W  S  F  T  M  F  R  D  L  I  S  M  L  F  T  H  P  H  S  L  R  M  G :   E  I  Q  I  I  R  Q  G  R  D  L  Q  G  I  S  N  N  T  M  L  D  *  V  L  M  S  L  V  S  Q  R  A  V  G  Y  Q  E  R  Q  P  P  L  E  T  K  L  Q  F  L  *  V  M  L  V  I  W  S  Q  N  G  *  N  K  M  N  L  E  C </first_frame>
            <second_frame>  E  R  A  W  T  I  S  I  S  R  F  *  C  N  L  *  G  S  F  I  *  L  P  N  R  K  F  K  F  Y  S  S  L  G  F  Y  K  Y  W  S  F  P  N  T  N  *  N  *  S  *  I  K  *  C  D  V  G  R  *  R  G  G  *  R  V  D  S  T  S  G  A  W  N  S  D  Y  F  *  F  S  S  S  W  W  K  *  S  *  K  N  Q  I  *  :  S  G  R  V  Q  Q  M  A  S  S  K  M  V  G  *  K  L  *  Q  N  Y  G  A  L  Q  C  S  E  I  *  *  V  C  S  S  H  T  L  T  V  *  G  W   : E  R  F  K  L  F  V  K  A  G  I  C  K  G  F  P  T  I  Q  C  W  I  R  C  S  C  P  *  F  P  K  G  Q  W  G  I  K  N  D  N  L  L  *  R  R  S  F  S  F  C  K  *  C  *  *  Y  G  V  R  M  D  R  T  R  *  T  W  S   </second_frame>
            <third_frame>   K  G  H  G  P  Y  P  Y  P  D  F  D  A  I  S  K  G  V  L  Y  N  Y  Q  T  G  S  S  N  S  T  P  A  W  D  F  T  S  T  G  H  F  Q  T  P  T  R  T  D  P  R  L  S  D  V  M  L  E  D  E  E  E  A  K  E  W  T  A  Q  V  E  P  G  I  Q  I  T  F  D  S  L  P  H  G  G  N  D  L  K  R  I  R  F  S :   R  D  V  F  N  K  W  Q  A  Q  R  W  W  G  E  N  Y  D  R  I  M  E  L  Y  N  V  Q  R  F  N  K  Y  A  L  H  T  P  S  Q  S  E  D  G  :  R  D  S  N  Y  S  S  R  P  G  S  A  R  D  F  Q  Q  Y  N  A  G  L  G  A  H  V  P  S  F  P  K  G  S  G  V  S  R  T  T  T  S  S  R  D  E  A  S  V  S  V  S  N  A  S  D  M  E  S  E  W  I  E  Q  D  E  P  G  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6253" stop="5976"/>
                    <exon start="5864" stop="5735"/>
                    <exon start="5656" stop="5453"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGHGPYPYPDFDAISKGVLYNYQTGSSNSTPAWDFTSTGHFQTPTRTDPRLSDVMLEDEEEAKEWTAQVEPGIQITFDSLPHGGNDLKRIRFSRDVFNKWQAQRWWGENYDRIMELYNVQRFNKYALHTPSQSEDGRDSNYSSRPGSARDFQQYNAGLGAHVPSFPKGSGVSRTTTSSRDEASVSVSNASDMESEWIEQDEPGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17714" PGL_stop="17189"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17714" e_stop="17189"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="17714" e_stop="17189" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17714" stop="17189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17714" stop="17189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17713" stop="17272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</gDNA_template>
            <first_frame> H  H  Q  P  I  K  T  M  *  R  E  V  V  K  Q  I  *  *  R  S  S  K  K  N  K  K  K  I  M  E  T  C  S  F  P  R  I  V  L  S  P  L  N  P  L  I  S  K  N  K  H  F  Q  I  P  K  S  K  Q  S  H  I  K  I  T  P  L  F  A  T  L  N  S  P  K  G  F  G  P  S  P  K  K  I  T  K  K  S  K  K  I  P  K  Q  E  N  E  D  Q  Y  D  D  N  D  D  N  D  D  D  D  E  Q  E  R  G  V  I  P  E  I  V  T  N  R  M  I  S  R  M  G  F  S  V  G  I  P  L  F  I  G  L  L  F  F  P  F  F  Y  Y  L  K  V  G  L  K  I  D  V  P  T  W  V  P  F  I  V  S  F  V  F  F  G  S  A  L  </first_frame>
            <second_frame>  T  T  N  Q  L  K  Q  C  E  E  K  L  *  S  K  S  S  E  E  V  Q  K  K  I  K  K  K  *  W  K  H  V  H  F  Q  E  L  Y  Y  L  L  *  I  H  *  Y  Q  K  T  N  T  F  K  F  P  N  P  N  N  H  I  *  K  S  H  L  F  L  Q  H  S  I  L  Q  K  V  L  D  L  P  L  R  K  L  P  K  N  P  R  K  Y  Q  N  K  K  M  K  I  N  T  T  I  T  M  I  M  M  M  M  M  N  K  K  E  E  L  Y  Q  R  *  *  L  I  E  *  *  V  E  W  D  F  Q  L  V  F  L  C  L  L  V  Y  C  F  F  L  F  F  I  I  L  R  L  V  *  K  L  M  Y  L  L  G  Y  L  L  L  C  H  L  C  F  L  G  V  P  Y </second_frame>
            <third_frame>   P  P  T  N  *  N  N  V  K  R  S  C  K  A  N  L  V  K  K  F  K  K  K  *  K  K  N  N  G  N  M  F  I  S  K  N  C  I  I  S  F  K  S  T  N  I  K  K  Q  T  L  S  N  S  Q  I  Q  T  I  T  Y  K  N  H  T  S  F  C  N  T  Q  F  S  K  R  F  W  T  F  P  *  E  N  Y  Q  K  I  Q  E  N  T  K  T  R  K  *  R  S  I  R  R  *  R  *  *  *  *  *  *  *  T  R  K  R  S  Y  T  R  D  S  N  *  *  N  D  K  *  N  G  I  F  S  W  Y  S  F  V  Y  W  F  I  V  F  S  F  F  L  L  S  *  G  W  F  K  N  *  C  T  Y  L  G  T  F  Y  C  V  I  C  V  F  W  E  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17660" stop="17190"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKKNKKKIMETCSFPRIVLSPLNPLISKNKHFQIPKSKQSHIKITPLFATLNSPKGFGPSPKKITKKSKKIPKQENEDQYDDNDDNDDDDEQERGVIPEIVTNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFVFFGSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18321" PGL_stop="21880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18321" e_stop="18403"/>
            <exon e_start="19916" e_stop="20162"/>
            <exon e_start="20320" e_stop="20592"/>
            <exon e_start="21542" e_stop="21880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18321" e_stop="18403" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="18404" i_stop="19915" i_length="1512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19916" e_stop="20162" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.951">
            <gDNA_intron_boundary i_start="20163" i_stop="20319" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20320" e_stop="20592" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.985">
            <gDNA_intron_boundary i_start="20593" i_stop="21541" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21542" e_stop="21880" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18321" stop="18403"/>
              <exon start="19916" stop="20162"/>
              <exon start="20320" stop="20592"/>
              <exon start="21542" stop="21880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18322" stop="18403"/>
              <exon start="19916" stop="20162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18374" stop="18403"/>
              <exon start="19916" stop="20162"/>
              <exon start="20320" stop="20558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18375" stop="18403"/>
              <exon start="19916" stop="20162"/>
              <exon start="20320" stop="20548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19922" stop="20162"/>
              <exon start="20320" stop="20557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20060" stop="20162"/>
              <exon start="20320" stop="20592"/>
              <exon start="21542" stop="21863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG : GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG : CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG : GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGTACTGTGTGTATGTAA</gDNA_template>
            <first_frame> T  T  I  L  T  K  F  Q  F  Q  I  I  F  P  S  S  F  A  N  I  T  L  S  S  T  L  S  W :   *  R  *  L  *  R  V  C  S  G  D  T  K  D  G  I  Q  C  I  L  H  M  E  P  S  G  A  W  E  *  A  L  A  V  G  W  D  G  V  L  D  L  V  L  R  L  L  V  M  L  E  L  D  V  V  L  D  S  A  L  A  S  L  C  S  A  L  A  L  V  Y  L  P  I  T  F  T  Q  V  L  T  M  :  H  S  Q  L  P  E  V  V  L  L  R  C  L  D  Q  L  I  F  E  A  *  E  T  L  W  K  R  V  G  V  T  S  I  Q  I  L  L  A  S  K  K  E  *  F  S  L  F  Q  A  *  G  S  K  N  Q  *  G  R  R  *  I  R  L  K  C  Q  S  K  C  L  F  R  I  N  A  W  I  V  *  N  K  A  S  I  A  Y  F  I  L  A  K  :  V  Q  R  I  K  Q  H  V  E  E  H  N  P  R  R  V  N  I  H  C  T  L  H  S  I  G  L  S  F  F  A  F  P  Q  I  V  G  S  I  *  V  E  E  K  R  A  F  T  V  A  V  V  N  M  L  S  F  L  L  V  W  *  T  L  F  E  *  K  *  E  F  E  L  I  R  K  R  V  K  N  V  S  E  L  S  R  K  V  I  I  Y  P  S  S  L  S  I  Y  Y  A  N  N  T  F  R  I  F  S  T  V  C  M  * </first_frame>
            <second_frame>  L  L  Y  *  Q  N  F  N  F  K  *  F  F  L  R  A  S  R  T  L  H  *  A  A  P  F  H   : G  R  D  D  Y  K  G  S  V  Q  E  I  R  K  M  E  S  S  A  S  Y  I  W  S  L  L  G  H  G  N  R  R  W  L  W  G  G  M  G  S  W  I  W  S  *  G  Y  W  L  C  W  S  W  M  W  C  W  I  Q  R  W  L  L  S  A  R  R  W  H  W  S  T  C  Q  L  H  L  H  R  S  L  Q  C :   I  H  S  C  Q  K  W  C  Y  *  D  V  S  I  N  *  Y  S  K  H  E  K  H  C  G  R  E  S  V  L  P  R  F  K  Y  C  W  L  P  R  K  S  D  S  V  F  F  K  H  K  V  Q  R  I  S  R  E  G  G  R  F  V  *  N  A  N  Q  N  V  F  S  G  S  M  H  G  S  S  K  T  R  H  Q  *  L  I  S  S  L  Q  R :   F  K  G  L  S  N  M  L  R  S  T  I  P  E  G  L  I  Y  I  A  H  F  T  A  L  A  L  V  F  L  P  S  H  R  *  *  G  A  Y  R  *  K  K  K  E  H  L  Q  L  Q  L  L  T  C  F  H  F  F  *  F  G  K  H  C  L  N  E  S  E  N  L  N  *  Y  G  K  G  S  K  M  S  L  N  Y  R  E  R  S  *  Y  T  L  R  L  C  P  S  I  M  L  I  I  L  F  G  F  L  V  L  C  V  C   </second_frame>
            <third_frame>   Y  Y  I  N  K  I  S  I  S  N  N  F  S  F  E  L  R  E  H  Y  T  E  Q  H  P  F  M  :  V  E  M  I  I  K  G  L  F  R  R  Y  E  R  W  N  P  V  H  P  T  Y  G  A  F  W  G  M  G  I  G  V  G  C  G  V  G  W  G  P  G  F  G  P  E  A  I  G  Y  V  G  A  G  C  G  V  G  F  S  V  G  F  S  L  L  G  V  G  I  G  L  P  A  N  Y  I  Y  T  G  P  Y  N   : A  F  T  A  A  R  S  G  A  I  E  M  S  R  S  T  D  I  R  S  M  R  N  I  V  E  E  S  R  C  Y  L  D  S  N  I  A  G  F  Q  E  R  V  I  Q  S  F  S  S  I  R  F  K  E  S  V  G  K  A  V  D  S  S  E  M  P  I  K  M  S  F  P  D  Q  C  M  D  R  L  K  Q  G  I  N  S  L  F  H  P  C  K   : G  S  K  D  *  A  T  C  *  G  A  Q  S  Q  K  G  *  Y  T  L  H  T  S  Q  H  W  P  *  F  F  C  L  P  T  D  S  R  E  H  I  G  R  R  K  K  S  I  Y  S  C  S  C  *  H  A  F  I  S  F  S  L  V  N  I  V  *  M  K  V  R  I  *  I  N  T  E  K  G  Q  K  C  L  *  T  I  A  K  G  H  N  I  P  F  V  F  V  H  L  L  C  *  *  Y  F  S  D  F  *  Y  C  V  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18323" stop="18403"/>
                    <exon start="19916" stop="20162"/>
                    <exon start="20320" stop="20592"/>
                    <exon start="21542" stop="21555"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYINKISISNNFSFELREHYTEQHPFMVEMIIKGLFRRYERWNPVHPTYGAFWGMGIGVGCGVGWGPGFGPEAIGYVGAGCGVGFSVGFSLLGVGIGLPANYIYTGPYNAFTAARSGAIEMSRSTDIRSMRNIVEESRCYLDSNIAGFQERVIQSFSSIRFKESVGKAVDSSEMPIKMSFPDQCMDRLKQGINSLFHPCKGSKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30179" PGL_stop="28012"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30179" e_stop="29673"/>
            <exon e_start="28309" e_stop="28012"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30179" e_stop="29673" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="29672" i_stop="28310" i_length="1363"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28309" e_stop="28012" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30179" stop="29673"/>
              <exon start="28309" stop="28049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30164" stop="29673"/>
              <exon start="28309" stop="28285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29875" stop="29673"/>
              <exon start="28309" stop="28086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29825" stop="29673"/>
              <exon start="28309" stop="28012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT : TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</gDNA_template>
            <first_frame> M  S  Q  C  F  L  L  A  *  S  L  N  *  L  I  Q  I  C  T  K  S  T  S  K  I  S  I  F  K  L  M  E  V  L  I  K  L  N  Q  P  P  *  *  *  L  S  K  T  L  D  L  S  P  Y  *  V  T  P  T  T  F  A  L  Y  I  S  Y  T  E  S  L  K  H  L  Y  I  N  S  S  G  D  N  N  F  W  V  Q  L  F  L  V  N  C  E  V  G  I  W  G  F  L  F  S  F  L  G  G  R  *  V  W  R  R  R  M  G  T  D  R  R  S  R  L  C  S  G  R  N  W  S  I  K  L  *  Y  I  S  I  W  W  L  V  F  R  C  R  R  T  L  L  C  L  Y  D  V  A  L  N  P  F  Q  Q  G  S  F  I  I  L  A  :  W  G  T  V  P  I  M  G  R  S  L  I  L  S  Q  E  G  V  E  G  Q  M  E  R  S  G  G  A  P  K  M  H  I  L  T  Q  S  I  A  S  G  T  C  I  E  A  A  T  V  Q  E  S  M  W  N  L  N  R  L  P  S  P  C  *  L  V  C  H  I  I  L  L  G  A  L  L  G  A  A  K  Q  A  A  I  S  N  V  T  A  V  K  A  S  R  T  R  H  Y  I  </first_frame>
            <second_frame>  C  P  N  A  S  F  *  L  N  L  S  I  N  S  S  K  F  V  L  N  Q  P  Q  K  S  P  F  L  S  *  W  R  Y  *  S  N  L  I  N  P  L  N  D  N  Y  P  K  P  *  I  C  P  L  I  R  *  L  Q  Q  L  L  L  S  I  S  H  T  L  K  V  *  N  T  F  I  L  T  P  V  V  I  I  I  S  G  Y  S  F  F  W  *  I  V  K  W  V  F  G  D  F  C  F  L  F  *  V  G  D  E  Y  G  G  G  E  W  V  Q  T  A  V  H  G  C  A  V  A  G  I  G  A  S  S  Y  D  I  *  V  F  G  G  W  Y  S  G  A  G  G  P  C  C  A  Y  T  T  *  L  *  T  H  F  S  K  V  L  S  S  S  *  L :   G  V  L  F  L  L  W  E  E  V  *  S  *  A  R  K  V  *  K  D  R  W  K  E  V  E  V  R  Q  R  C  I  S  *  L  K  V  L  R  A  A  H  A  S  R  P  Q  P  F  K  K  A  C  G  I  S  I  D  C  P  V  L  V  D  *  Y  V  T  *  Y  Y  W  E  H  Y  W  E  Q  Q  N  K  R  Q  F  P  T  *  Q  Q  *  K  L  P  E  H  A  T  I  F </second_frame>
            <third_frame>   V  P  M  L  P  F  S  L  I  S  Q  L  T  H  P  N  L  Y  *  I  N  L  K  N  L  H  F  *  A  N  G  G  T  N  Q  T  *  S  T  P  L  M  I  I  I  Q  N  P  R  S  V  P  L  L  G  N  S  N  N  F  C  S  L  Y  L  I  H  *  K  S  E  T  P  L  Y  *  L  Q  W  *  *  *  F  L  G  T  A  F  F  G  E  L  *  S  G  Y  L  G  I  F  V  F  F  F  R  W  E  M  S  M  A  A  E  N  G  Y  R  P  P  F  T  A  V  Q  W  Q  E  L  E  H  Q  A  M  I  Y  K  Y  L  V  A  G  I  P  V  P  A  D  L  V  V  P  I  R  R  S  F  E  P  I  S  A  R  F  F  H  H  P  S   : L  G  Y  C  S  Y  Y  G  K  K  F  D  P  E  P  G  R  C  R  R  T  D  G  K  K  W  R  C  A  K  D  A  Y  P  D  S  K  Y  C  E  R  H  M  H  R  G  R  N  R  S  R  K  H  V  E  S  Q  S  T  A  Q  S  L  L  T  S  M  S  H  N  T  T  G  S  T  T  G  S  S  K  T  S  G  N  F  Q  R  N  S  S  E  S  F  Q  N  T  P  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29898" stop="29673"/>
                    <exon start="28309" stop="28014"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYLGIFVFFFRWEMSMAAENGYRPPFTAVQWQELEHQAMIYKYLVAGIPVPADLVVPIRRSFEPISARFFHHPSLGYCSYYGKKFDPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKHVESQSTAQSLLTSMSHNTTGSTTGSSKTSGNFQRNSSESFQNTPLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="32841" PGL_stop="38687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32841" e_stop="32914"/>
            <exon e_start="34595" e_stop="34643"/>
            <exon e_start="35481" e_stop="35589"/>
            <exon e_start="36717" e_stop="36810"/>
            <exon e_start="37418" e_stop="37551"/>
            <exon e_start="37929" e_stop="38092"/>
            <exon e_start="38471" e_stop="38687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.259" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32841" e_stop="32914" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.259" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32915" i_stop="34594" i_length="1680"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34595" e_stop="34643" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34644" i_stop="35480" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35481" e_stop="35589" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="35590" i_stop="36716" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36717" e_stop="36810" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36811" i_stop="37417" i_length="607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37418" e_stop="37551" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37552" i_stop="37928" i_length="377"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="37929" e_stop="38092" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38093" i_stop="38470" i_length="378"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38471" e_stop="38687" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32841" stop="32914"/>
              <exon start="34595" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32841" stop="32914"/>
              <exon start="34595" stop="34643"/>
              <exon start="35481" stop="35589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32842" stop="32914"/>
              <exon start="34595" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32842" stop="32914"/>
              <exon start="34595" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32843" stop="32914"/>
              <exon start="34595" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32881" stop="32914"/>
              <exon start="34595" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34596" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34596" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34596" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34596" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34596" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34596" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34597" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34597" stop="34643"/>
              <exon start="35481" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35558" stop="35589"/>
              <exon start="36717" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36788" stop="36810"/>
              <exon start="37418" stop="37551"/>
              <exon start="37929" stop="38092"/>
              <exon start="38471" stop="38683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37992" stop="38092"/>
              <exon start="38471" stop="38683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38504" stop="38687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38538" stop="38687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG : GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG : GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA : CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA : GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG : GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT : GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</gDNA_template>
            <first_frame> R  K  I  I  F  *  K  S  I  F  H  I  Y  N  F  F  K  M  S  L  F  G  L  G  R :   N  Q  R  T  F  R  P  K  K  S  A  P  S  G  S  K  :  G  A  Q  L  R  Q  H  I  D  S  T  L  G  S  G  N  L  R  E  A  V  R  L  P  P  G  E  D  I  N  E  W  L  A  V  N   : T  V  D  F  F  N  Q  V  N  L  L  Y  G  T  L  T  E  F  C  T  P  E  N  C  P  T  M  T  A  G  P  K :   Y  E  Y  R  W  A  D  G  V  Q  I  K  K  P  I  E  V  S  A  P  K  Y  V  E  Y  L  M  D  W  I  E  T  Q  L  D  D  E  S  L  F  P  Q  R  L   : G  A  P  F  P  P  N  F  K  D  V  V  K  T  I  F  K  R  L  F  R  V  Y  A  H  I  Y  H  S  H  F  Q  K  I  V  S  L  K  E  E  A  H  L  N  T  C  F  K  H  F  I  L  F  T  H  :  E  F  G  L  I  D  K  K  E  L  A  P  L  Q  D  L  I  D  S  I  I  V  P  Y  *  S  S  S  F  S  F  C  F  *  P  I  F  N  R  K  L  M  S  M  V  *  *  K  C  I  F  T  I  L  *  *  V  C  S  L  K  V  *  H  F  N  I  I  I  D  I  V  </first_frame>
            <second_frame>  E  K  S  F  F  R  N  P  F  F  I  Y  I  I  F  L  K  *  V  Y  L  V  L  E   : G  I  R  E  H  S  V  P  K  R  V  H  P  Q  G  V  R :   V  H  N  *  D  S  T  L  I  L  L  *  A  A  E  T  *  E  R  L  *  G  F  L  L  G  K  I  L  M  N  G  *  L  S  T  :  L  *  I  S  S  T  R  *  I  C  F  M  A  P  S  L  S  S  V  H  Q  K  T  A  Q  Q  *  L  Q  A  P   : S  M  S  I  G  G  L  M  V  Y  K  S  R  S  L  L  K  F  L  L  R  N  M  L  N  I  *  W  T  G  L  K  L  N  W  M  M  N  L  Y  F  L  K  G  L  :  V  H  L  F  H  L  T  S  R  M  L  S  R  R  Y  S  N  V  S  F  V  Y  M  H  I  S  I  T  P  I  F  R  R  S  *  V  L  R  R  K  H  I  *  I  R  A  S  S  I  S  F  S  S  P  M :   N  L  G  *  L  T  K  R  S  *  L  H  S  K  I  S  *  I  L  L  L  C  L  T  N  H  L  L  S  V  F  A  F  N  L  F  L  I  G  N  *  *  V  W  C  D  K  N  V  F  L  P  F  Y  N  K  Y  V  V  *  K  F  D  I  L  I  S  L  L  I  L  C </second_frame>
            <third_frame>   K  N  H  F  L  E  I  H  F  S  Y  I  *  F  F  *  N  E  S  I  W  S  W  K  :  E  S  E  N  I  P  S  Q  K  E  C  T  L  R  E  *   : G  C  T  I  K  T  A  H  *  F  Y  F  R  Q  R  K  L  E  R  G  C  K  A  S  S  W  G  R  Y  *  *  M  A  S  C  Q  H :   C  R  F  L  Q  P  G  E  S  A  L  W  H  P  H  *  V  L  Y  T  R  K  L  P  N  N  D  C  R  P  Q  :  V  *  V  *  V  G  *  W  C  T  N  Q  E  A  Y  *  S  F  C  S  E  I  C  *  I  F  D  G  L  D  *  N  S  I  G  *  *  I  F  I  S  S  K  A  W :   C  T  F  S  T  *  L  Q  G  C  C  Q  D  D  I  Q  T  S  L  S  C  I  C  T  Y  L  S  L  P  F  S  E  D  R  E  S  *  G  G  S  T  F  E  Y  V  L  Q  A  F  H  S  L  H  P   : *  I  W  V  D  *  Q  K  G  A  S  S  T  P  R  S  H  R  F  Y  Y  C  A  L  L  I  I  F  F  Q  F  L  L  L  T  Y  F  *  *  E  I  N  E  Y  G  V  I  K  M  Y  F  Y  H  S  I  I  S  M  *  S  K  S  L  T  F  *  Y  H  Y  *  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32859" stop="32914"/>
                    <exon start="34595" stop="34643"/>
                    <exon start="35481" stop="35589"/>
                    <exon start="36717" stop="36810"/>
                    <exon start="37418" stop="37551"/>
                    <exon start="37929" stop="38092"/>
                    <exon start="38471" stop="38545"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSIFHIYNFFKMSLFGLGRNQRTFRPKKSAPSGSKGAQLRQHIDSTLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLTEFCTPENCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDESLFPQRLGAPFPPNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEFGLIDKKELAPLQDLIDSIIVPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="47570" PGL_stop="54224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47570" e_stop="47613"/>
            <exon e_start="47755" e_stop="47910"/>
            <exon e_start="48642" e_stop="48871"/>
            <exon e_start="48962" e_stop="49001"/>
            <exon e_start="49100" e_stop="49254"/>
            <exon e_start="49352" e_stop="49453"/>
            <exon e_start="50369" e_stop="50413"/>
            <exon e_start="50503" e_stop="50643"/>
            <exon e_start="51380" e_stop="51475"/>
            <exon e_start="51566" e_stop="51667"/>
            <exon e_start="54023" e_stop="54224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.558" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.083" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47570" e_stop="47613" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.721">
            <gDNA_intron_boundary i_start="47614" i_stop="47754" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47755" e_stop="47910" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.751" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47911" i_stop="48641" i_length="731"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48642" e_stop="48871" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48872" i_stop="48961" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48962" e_stop="49001" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.558">
            <gDNA_intron_boundary i_start="49002" i_stop="49099" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49100" e_stop="49254" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.997">
            <gDNA_intron_boundary i_start="49255" i_stop="49351" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49352" e_stop="49453" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.865">
            <gDNA_intron_boundary i_start="49454" i_stop="50368" i_length="915"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50369" e_stop="50413" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.787" acc_prob="0.083">
            <gDNA_intron_boundary i_start="50414" i_stop="50502" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50503" e_stop="50643" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="50644" i_stop="51379" i_length="736"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51380" e_stop="51475" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51476" i_stop="51565" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51566" e_stop="51667" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51668" i_stop="54022" i_length="2355"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="54023" e_stop="54224" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47570" stop="47613"/>
              <exon start="47755" stop="47910"/>
              <exon start="48642" stop="48871"/>
              <exon start="48962" stop="49001"/>
              <exon start="49100" stop="49254"/>
              <exon start="49352" stop="49397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47570" stop="47613"/>
              <exon start="47755" stop="47910"/>
              <exon start="48642" stop="48839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47796" stop="47910"/>
              <exon start="48642" stop="48871"/>
              <exon start="48962" stop="49001"/>
              <exon start="49100" stop="49254"/>
              <exon start="49352" stop="49402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47814" stop="47910"/>
              <exon start="48642" stop="48871"/>
              <exon start="48962" stop="49001"/>
              <exon start="49100" stop="49254"/>
              <exon start="49352" stop="49428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47829" stop="47910"/>
              <exon start="48642" stop="48871"/>
              <exon start="48962" stop="49001"/>
              <exon start="49100" stop="49254"/>
              <exon start="49352" stop="49441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47829" stop="47910"/>
              <exon start="48642" stop="48871"/>
              <exon start="48962" stop="49001"/>
              <exon start="49100" stop="49254"/>
              <exon start="49352" stop="49441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48716" stop="48871"/>
              <exon start="48962" stop="49001"/>
              <exon start="49100" stop="49250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49192" stop="49254"/>
              <exon start="49352" stop="49453"/>
              <exon start="50369" stop="50413"/>
              <exon start="50503" stop="50643"/>
              <exon start="51380" stop="51475"/>
              <exon start="51566" stop="51667"/>
              <exon start="54023" stop="54208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49192" stop="49254"/>
              <exon start="49352" stop="49453"/>
              <exon start="50369" stop="50413"/>
              <exon start="50503" stop="50643"/>
              <exon start="51380" stop="51475"/>
              <exon start="51566" stop="51657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49192" stop="49254"/>
              <exon start="49352" stop="49453"/>
              <exon start="50369" stop="50413"/>
              <exon start="50503" stop="50643"/>
              <exon start="51380" stop="51472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49236" stop="49254"/>
              <exon start="49352" stop="49453"/>
              <exon start="50369" stop="50413"/>
              <exon start="50503" stop="50643"/>
              <exon start="51380" stop="51475"/>
              <exon start="51566" stop="51667"/>
              <exon start="54023" stop="54224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA : GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG : GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG : GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG : CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG : ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA : GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA : GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG : GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA : ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG : GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</gDNA_template>
            <first_frame> E  L  W  S  T  T  W  I  C  S  S  S  Y  *  E :   W  W  I  Q  Y  F  P  T  Q  T  Y  *  R  E  A  Q  N  T  S  A  T  S  Y  A  D  R  F  K  R  M  G  C  G  L  C  L  V  I  S  A  T  L  S  V  A  D  V  E  Q  C  G  W :   T  S  *  I  L  F  S  N  *  *  K  N  C  C  S  K  N  P  S  Y  G  *  Y  D  I  R  F  S  L  F  *  E  E  S  K  T  P  G  D  S  S  S  S  Y  S  F  I  G  S  N  T  S  C  K  *  K  C  F  N  D  G  *  V  L  *  *  G  G  R  F  P  R  G  *  S  R   : G  N  A  T  *  P  *  T  *  N  E  E  N  C :   T  R  R  R  T  F  G  S  N  *  F  F  H  L  F  G  *  P  S  T  *  *  P  R  *  W  S  *  L  L  E  N  I  *  W  K  *  L  Q  S  S  *  Q  E  L  L  L  *  *  I  K   : D  S  C  W  *  T  S  D  G  S  C  C  C  *  L  V  *  R  Y  K  T  N  G  P  C  C  *  T  S  W  L  C  S  T   : S  C  F  R  K  R  T  V  F  F  N  F  *  C  A   : S  S  W  I  N  T  L  Q  H  G  F  L  F  C  H  E  R  V  N  I  W  F  S  F  A  T  V  C  *  W  G  *  R  V  P  *  *  *  N  E  A  H  P  V  C  A  K   : G  L  M  D  C  A  S  E  C  R  K  Y  S  L  F  T  G  E  G  S  *  L  H  L  Y  P  R  S  Q  V  F  G   : N  *  C  *  Y  W  F  F  H  C  R  E  W  S  F  G  A  C  D  W  C  N  Y  E  P  S  S  *  H  G  F  S  C  T   : G  K  L  S  R  *  V  A  *  A  T  N  R  R  C  T  C  I  S  Y  R  T  L  S  C  C  C  T  K  I  G  A  *  Y  Y  R  V  G  Q  T  T  H  I  V  H  L  L  Q  K  L  I  L  E  T  Y  V  Y  I  D  V  V  P  F  Y  F  R  S   </first_frame>
            <second_frame>  N  C  G  P  L  P  G  Y  V  R  A  H  I  E   : S  G  G  F  N  I  S  P  L  K  P  I  N  G  R  P  R  T  Q  V  Q  H  L  M  Q  I  D  L  K  G  W  G  V  G  Y  V  S  S  F  Q  Q  H  C  L  L  Q  M  L  N  S  V  A   : G  L  R  E  Y  F  S  Q  T  D  E  R  T  A  A  P  R  I  P  V  M  V  N  M  T  S  A  S  V  S  S  K  R  N  Q  K  L  Q  E  T  P  H  H  R  T  R  S  L  D  Q  I  R  A  A  N  R  N  A  S  M  M  D  E  Y  S  D  E  E  E  D  F  Q  G  A  D  Q  E  :  V  M  P  P  S  P  E  R  E  M  K  R  T   : A  L  E  E  E  P  L  D  Q  I  D  F  S  I  F  S  G  N  L  R  R  D  D  R  D  N  G  R  N  C  W  R  I  S  D  G  N  N  F  R  V  R  S  K  N  F  C  Y  D  K  S  K  :  I  P  A  G  K  P  L  M  D  L  V  A  A  D  W  F  K  D  T  K  R  M  D  H  V  A  R  R  P  G  C  A  A  Q  :  V  A  S  E  K  G  L  F  S  L  I  F  N  V  Q  :  V  P  G  S  T  H  Y  S  M  V  F  Y  F  V  M  K  E  L  T  S  G  S  L  L  Q  R  F  V  D  G  D  D  E  F  R  N  S  R  M  K  L  I  P  S  V  P  K  :  G  S  W  I  V  R  Q  S  V  G  S  T  P  C  L  L  G  K  A  V  D  C  T  Y  I  R  G  P  K  Y  L  E  :  I  D  V  D  I  G  S  S  T  V  A  N  G  V  L  G  L  V  I  G  V  I  T  S  L  V  V  D  M  A  F  L  V  Q  :  G  N  S  P  D  E  L  P  E  Q  L  I  G  A  V  R  A  S  H  I  E  L  S  A  A  V  V  P  K  L  E  P  D  T  T  E  *  V  K  P  H  T  *  F  T  F  F  R  S  *  F  L  K  H  T  Y  T  *  M  *  F  L  S  I  F  V  H  </second_frame>
            <third_frame>   I  V  V  H  Y  L  D  M  F  E  L  I  L  R  :  V  V  D  S  I  F  P  H  S  N  L  L  T  G  G  P  E  H  K  C  N  I  L  C  R  S  I  *  K  D  G  V  W  A  M  S  R  H  F  S  N  I  V  C  C  R  C  *  T  V  W  L  :  D  F  V  N  T  F  L  K  L  M  K  E  L  L  L  Q  E  S  Q  L  W  L  I  *  H  P  L  Q  S  L  L  R  G  I  K  N  S  R  R  L  L  I  I  V  L  V  H  W  I  K  Y  E  L  Q  I  E  M  L  Q  *  W  M  S  T  L  M  R  R  K  I  S  K  G  L  I  K  R :   *  C  H  L  A  L  N  V  K  *  R  E  L  :  H  S  K  K  N  L  W  I  K  L  I  F  P  S  F  R  V  T  F  D  V  M  T  A  I  M  V  V  T  A  G  E  Y  L  M  E  I  T  S  E  F  V  A  R  T  F  A  M  I  N  Q  R :   F  L  L  V  N  L  *  W  I  L  L  L  L  T  G  L  K  I  Q  N  E  W  T  M  L  L  D  V  L  V  V  Q  H  K :   L  L  Q  K  K  D  C  F  L  *  F  L  M  C  K :   F  L  D  Q  H  T  T  A  W  F  S  I  L  S  *  K  S  *  H  L  V  L  F  C  N  G  L  L  M  G  M  T  S  S  V  I  V  E  *  S  S  S  R  L  C  Q  R :   A  H  G  L  C  V  R  V  S  E  V  L  L  V  Y  W  G  R  Q  L  T  A  P  I  S  A  V  P  S  I  W  K :   L  M  L  I  L  V  L  P  L  S  R  M  E  F  W  G  L  *  L  V  *  L  R  A  *  *  L  T  W  L  F  L  Y  R :   E  T  L  P  M  S  C  L  S  N  *  *  A  L  Y  V  H  L  I  *  N  S  Q  L  L  L  Y  Q  N  W  S  L  I  L  Q  S  R  S  N  H  T  H  S  S  P  S  S  E  V  D  S  *  N  I  R  I  H  R  C  S  S  F  L  F  S  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47571" stop="47613"/>
                    <exon start="47755" stop="47910"/>
                    <exon start="48642" stop="48871"/>
                    <exon start="48962" stop="49001"/>
                    <exon start="49100" stop="49254"/>
                    <exon start="49352" stop="49453"/>
                    <exon start="50369" stop="50413"/>
                    <exon start="50503" stop="50643"/>
                    <exon start="51380" stop="51475"/>
                    <exon start="51566" stop="51667"/>
                    <exon start="54023" stop="54133"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCGPLPGYVRAHIESGGFNISPLKPINGRPRTQVQHLMQIDLKGWGVGYVSSFQQHCLLQMLNSVAGLREYFSQTDERTAAPRIPVMVNMTSASVSSKRNQKLQETPHHRTRSLDQIRAANRNASMMDEYSDEEEDFQGADQEVMPPSPEREMKRTALEEEPLDQIDFSIFSGNLRRDDRDNGRNCWRISDGNNFRVRSKNFCYDKSKIPAGKPLMDLVAADWFKDTKRMDHVARRPGCAAQVASEKGLFSLIFNVQVPGSTHYSMVFYFVMKELTSGSLLQRFVDGDDEFRNSRMKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCTYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITSLVVDMAFLVQGNSPDELPEQLIGAVRASHIELSAAVVPKLEPDTTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55675" PGL_stop="64262"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55675" e_stop="55881"/>
            <exon e_start="56204" e_stop="56236"/>
            <exon e_start="57891" e_stop="58119"/>
            <exon e_start="58642" e_stop="58774"/>
            <exon e_start="63199" e_stop="64108"/>
            <exon e_start="64252" e_stop="64262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.932" e_score="0.928"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55675" e_stop="55881" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55882" i_stop="56203" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56204" e_stop="56236" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="56237" i_stop="57890" i_length="1654"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57891" e_stop="58119" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.829">
            <gDNA_intron_boundary i_start="58120" i_stop="58641" i_length="522"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58642" e_stop="58774" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.964">
            <gDNA_intron_boundary i_start="58775" i_stop="63198" i_length="4424"/>
          </intron>
          <exon e_serial="5" e_score="0.928">
            <gDNA_exon_boundary e_start="63199" e_stop="64108" e_length="910"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="64109" i_stop="64251" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="64252" e_stop="64262" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55675" stop="55881"/>
              <exon start="56204" stop="56236"/>
              <exon start="57891" stop="58119"/>
              <exon start="58642" stop="58774"/>
              <exon start="63199" stop="63402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55705" stop="55881"/>
              <exon start="56204" stop="56236"/>
              <exon start="57891" stop="58119"/>
              <exon start="58642" stop="58774"/>
              <exon start="63199" stop="63520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55710" stop="55881"/>
              <exon start="56204" stop="56236"/>
              <exon start="57891" stop="58119"/>
              <exon start="58642" stop="58774"/>
              <exon start="63199" stop="63443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55714" stop="55881"/>
              <exon start="56204" stop="56236"/>
              <exon start="57891" stop="58119"/>
              <exon start="58642" stop="58774"/>
              <exon start="63199" stop="63486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55783" stop="55881"/>
              <exon start="56204" stop="56236"/>
              <exon start="57891" stop="58119"/>
              <exon start="58642" stop="58774"/>
              <exon start="63199" stop="63522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55784" stop="55881"/>
              <exon start="56204" stop="56236"/>
              <exon start="57891" stop="58119"/>
              <exon start="58642" stop="58743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63250" stop="64108"/>
              <exon start="64252" stop="64262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63250" stop="64108"/>
              <exon start="64252" stop="64261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63323" stop="63811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63426" stop="63826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG : ATGTTGAAGAGTTTTATCAACAATGTGACCCAG : AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG : GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG : GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGCATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTATTGCCTATATATTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAA : AAGGAAAATAT</gDNA_template>
            <first_frame> P  K  I  F  I  F  P  L  S  L  P  S  I  L  S  L  C  L  S  F  L  S  L  N  F  L  S  H  Q  Q  S  H  F  C  V  S  *  W  M  E  L  S  S  T  I  L  E  L  L  K  K  C  L  E  I  L  R  V  E  E  L  H  L  S  K  P  L  L  L  :  M  L  K  S  F  I  N  N  V  T  Q  :  R  K  R  T  S  A  F  M  D  F  P  V  K  V  G  K  S  I  Y  Q  L  K  K  C  P  Q  S  F  L  S  L  L  W  A  *  T  S  P  E  M  A  C  K  R  R  T  G  S  P  W  L  L  C  I  V  M  H  G  Y  F  L  L  P  F  I  L  V  L  D  L  G  L  I  E  L  I   : G  E  G  C  S  I  *  *  M  I  S  L  Q  F  S  R  L  C  L  G  Q  P  R  N  N  Q  K  T  S  H  Q  C  Q  I  T  A  A  P  S  L  S  Q  T  Q  R :   W  Y  N  V  V  L  N  L  R  S  S  I  Q  D  H  N  Q  K  M  T  M  K  M  V  W  M  K  M  M  S  K  E  K  H  Y  V  V  L  V  V  K  T  M  H  L  M  N  S  G  S  A  V  T  Y  V  R  Y  G  S  M  G  S  V  L  K  S  L  L  P  G  L  S  I  S  S  S  T  S  A  H  L  A  P  A  A  R  E  H  A  L  D  C  T  C  V  I  E  V  Y  P  L  *  S  H  E  N  C  *  D  L  F  A  V  *  E  V  D  F  L  W  E  A  L  R  C  H  M  F  Y  S  T  L  Q  L  S  I  I  *  L  Q  E  C  C  C  L  A  S  F  S  S  M  S  C  C  E  *  C  R  L  P  L  *  I  S  R  C  V  G  *  S  Y  C  V  M  T  V  Q  I  S  S  S  C  L  C  T  V  E  G  S  H  F  S  Q  L  C  D  V  K  K  M  L  F  F  P  K  F  V  L  S  I  F  C  F  L  W  P  A  I  F  F  V  P  S  P  P  L  L  F  D  S  F  *  S  S  *  Y  S  S  V  H  E  A  S  R  V  Y  V  G  S  E  K  D  C  M  H  V  M  W  L  V  H  L  N  S  *  S  N  K  S  S  C  V  F  D  *  G  I  A  Y  I  F  F  G  F  L  S  H  V  L  C  L  F  *  S  S  T  N  L  D  L  R  L  K  :  K  E  N   </first_frame>
            <second_frame>  P  K  F  S  F  S  P  S  P  F  P  P  F  S  L  S  V  *  A  F  S  L  *  T  F  S  L  I  S  K  A  I  S  V  S  H  D  G  W  S  S  A  V  Q  S  S  N  C  *  R  S  V  *  R  F  *  G  S  K  S  C  T  C  Q  S  P  Y  Y  * :   C  *  R  V  L  S  T  M  *  P  R :   E  R  E  P  L  P  L  W  I  S  Q  *  K  L  G  S  Q  F  T  S  *  R  S  A  P  R  A  S  *  A  C  F  G  H  K  L  R  P  R  W  H  A  R  E  G  L  A  L  L  G  C  C  A  *  *  C  M  V  T  F  C  C  L  L  F  W  C  *  I  W  V  *  *  S  *  *  :  E  K  V  V  Q  Y  D  K  *  S  P  Y  N  F  R  G  C  V  W  D  S  Q  E  T  I  K  R  Q  V  I  N  V  K  S  Q  Q  H  Q  V  *  V  K  L  K   : G  G  T  T  W  F  *  I  S  D  Q  V  F  K  T  T  T  K  R  *  R  *  R  W  F  G  *  R  *  *  A  R  R  N  T  M  W  C  L  W  *  K  L  C  I  *  *  I  L  D  L  L  *  H  M  *  G  M  V  P  W  E  V  C  *  N  H  S  C  Q  G  *  A  Y  Q  A  V  Q  V  P  I  L  H  Q  Q  Q  E  N  T  P  L  I  A  P  A  L  L  R  F  I  L  C  E  V  M  K  T  V  K  I  F  S  R  Y  E  K  W  I  S  Y  G  K  L  F  D  A  I  C  S  I  Q  H  Y  N  Y  L  L  S  S  C  K  N  V  V  V  *  R  L  F  L  V  C  R  A  V  N  D  V  G  C  L  S  K  L  V  V  V  *  V  E  V  I  V  S  *  L  F  K  S  Q  V  V  V  S  A  L  L  R  E  A  I  F  L  S  Y  V  M  L  R  R  C  C  S  S  P  N  L  F  C  Q  S  F  V  S  C  G  L  Q  F  F  L  F  P  L  L  P  S  Y  L  I  H  S  E  V  A  D  T  V  Q  C  T  K  H  L  V  F  T  W  V  R  K  R  T  V  C  M  *  C  G  *  Y  I  L  I  L  E  V  T  S  L  A  V  Y  L  I  E  V  L  P  I  Y  F  L  V  F  Y  L  M  C  C  V  C  F  E  V  Q  L  I  W  I  Y  A  *  K :   R  K  I  </second_frame>
            <third_frame>   Q  N  F  H  F  P  P  L  P  S  L  H  S  L  S  L  S  K  L  S  L  S  K  L  S  L  S  S  A  K  P  F  L  C  L  M  M  D  G  A  Q  Q  Y  N  P  R  T  V  E  E  V  F  R  D  F  K  G  R  R  A  A  L  V  K  A  L  T  T   : D  V  E  E  F  Y  Q  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  F  P  S  E  S  W  E  V  N  L  P  A  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  A  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  D  R  A  D  R :   R  R  L  F  N  M  I  N  D  L  P  T  I  F  E  V  V  S  G  T  A  K  K  Q  S  K  D  K  S  S  M  S  N  H  S  S  T  K  S  K  S  N  S  K  :  V  V  Q  R  G  S  E  S  Q  I  K  Y  S  R  P  Q  P  K  D  D  D  E  D  G  L  D  E  D  D  E  Q  G  E  T  L  C  G  A  C  G  E  N  Y  A  S  D  E  F  W  I  C  C  D  I  C  E  V  W  F  H  G  K  C  V  K  I  T  P  A  R  A  E  H  I  K  Q  Y  K  C  P  S  C  T  S  S  K  R  T  R  P  *  L  H  L  R  Y  *  G  L  S  F  V  K  S  *  K  L  L  R  S  F  R  G  M  R  S  G  F  L  M  G  S  S  S  M  P  Y  V  L  F  N  I  T  I  I  Y  Y  L  V  A  R  M  L  L  S  S  V  F  F  *  Y  V  V  L  *  M  M  *  V  A  S  L  N  *  S  L  C  R  L  K  L  L  C  H  D  C  S  N  L  K  *  L  S  L  H  C  *  G  K  P  F  F  S  V  M  *  C  *  E  D  A  V  L  P  Q  I  C  F  V  N  L  L  F  P  V  A  C  N  F  F  C  S  L  S  S  P  L  I  *  F  I  L  K  *  L  I  Q  F  S  A  R  S  I  S  C  L  R  G  F  G  K  G  L  Y  A  C  N  V  V  S  T  S  *  F  L  K  *  Q  V  *  L  C  I  *  L  R  Y  C  L  Y  I  F  W  F  S  I  S  C  V  V  F  V  L  K  F  N  *  F  G  F  T  L  K   : K  G  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55677" stop="55881"/>
                    <exon start="56204" stop="56236"/>
                    <exon start="57891" stop="58119"/>
                    <exon start="58642" stop="58774"/>
                    <exon start="63199" stop="63471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNFHFPPLPSLHSLSLSKLSLSKLSLSSAKPFLCLMMDGAQQYNPRTVEEVFRDFKGRRAALVKALTTDVEEFYQQCDPEKENLCLYGFPSESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRADRRRLFNMINDLPTIFEVVSGTAKKQSKDKSSMSNHSSTKSKSNSKVVQRGSESQIKYSRPQPKDDDEDGLDEDDEQGETLCGACGENYASDEFWICCDICEVWFHGKCVKITPARAEHIKQYKCPSCTSSKRTRP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63723" stop="63968"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKSQVVVSALLREAIFLSYVMLRRCCSSPNLFCQSFVSCGLQFFLFPLLPSYLIHSEVADTVQCTKHLVFTWVRKRTVCM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="74813" PGL_stop="75603"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74813" e_stop="75444"/>
            <exon e_start="75540" e_stop="75603"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="74813" e_stop="75444" e_length="632"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="1.000">
            <gDNA_intron_boundary i_start="75445" i_stop="75539" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75540" e_stop="75603" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74813" stop="75444"/>
              <exon start="75540" stop="75603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG : GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</gDNA_template>
            <first_frame> L  Q  H  H  L  C  L  K  R  A  E  V  K  G  L  C  R  L  M  *  Y  L  K  M  K  A  T  G  L  L  V  M  L  L  L  G  K  V  R  M  M  I  P  Y  H  W  R  V  I  K  F  S  I  I  R  V  P  C  Q  W  *  A  I  V  V  V  Y  A  L  M  I  L  *  A  L  R  *  R  L  T  *  K  V  R  I  S  W  I  L  R  K  A  S  A  M  M  N  L  L  V  R  L  G  F  W  L  S  Q  M  L  R  I  L  *  L  D  P  R  Q  F  L  R  D  L  R  S  R  S  L  I  K  I  *  M  Q  Q  S  A  A  V  F  L  K  W  T  T  Y  P  Y  G  D  I  H  L  S  V  E  G  D  Q  K  W  K  T  H  S  Q  L  F  L  D  S  *  K  F  L  Y  R  C  *  L  V  I  A  C  L  M  D  C  L  D  A  *  V  I  *  R  L  I  S  L  E  F  M  M  A  M  V  V  L  R :   W  Q  I  T  A  E  T  G  F  M  L  Y  W  L  R  S  W  K  L  L  * </first_frame>
            <second_frame>  Y  S  I  I  C  A  *  R  E  Q  K  *  R  D  Y  V  A  *  C  D  I  *  K  *  K  Q  L  D  C  W  *  C  C  C  *  G  K  *  G  *  *  F  L  I  T  G  G  *  S  N  S  R  *  F  V  F  P  V  S  G  E  R  L  *  *  F  M  R  *  *  F  Y  R  L  *  D  S  V  *  H  R  R  S  G  F  R  G  F  S  E  K  H  Q  P  *  *  T  Y  W  *  D  W  G  F  G  *  V  R  C  *  G  Y  F  D  *  T  R  G  S  S  *  E  T  *  G  A  D  H  *  *  R  F  E  C  N  S  Q  P  Q  C  F  *  S  G  L  H  T  L  M  G  I  Y  I  Y  L  W  K  E  T  R  N  G  R  R  I  R  N  C  S  *  I  H  E  N  S  S  T  D  V  N  W  *  S  R  A  *  W  T  V  *  T  L  E  S  F  D  D  S  F  L  W  S  L  *  W  P  W  W  F  S   : G  G  K  L  L  P  R  P  D  S  C  C  I  G  *  G  V  G  N  F  Y   </second_frame>
            <third_frame>   T  A  S  S  V  P  E  E  S  R  S  E  G  T  M  S  L  D  V  I  S  E  N  E  S  N  W  I  A  G  D  A  V  V  R  E  S  E  D  D  D  S  L  S  L  E  G  D  Q  I  L  D  N  S  C  S  L  S  V  V  S  D  C  S  S  L  C  A  D  D  F  I  G  F  E  I  A  S  D  I  E  G  Q  D  F  V  D  S  Q  K  S  I  S  H  D  E  L  I  G  K  T  G  V  L  V  E  S  D  V  E  D  T  L  I  R  P  A  A  V  P  E  R  L  E  E  Q  I  T  D  K  D  L  N  A  T  V  S  R  S  V  F  E  V  D  Y  I  P  L  W  G  Y  T  S  I  C  G  R  R  P  E  M  E  D  A  F  A  T  V  P  R  F  M  K  I  P  L  P  M  L  I  G  D  R  V  L  D  G  L  S  R  R  L  S  H  L  T  T  H  F  F  G  V  Y  D  G  H  G  G  S  Q  :  V  A  N  Y  C  R  D  R  I  H  A  V  L  A  E  E  L  E  T  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74815" stop="75444"/>
                    <exon start="75540" stop="75602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TASSVPEESRSEGTMSLDVISENESNWIAGDAVVRESEDDDSLSLEGDQILDNSCSLSVVSDCSSLCADDFIGFEIASDIEGQDFVDSQKSISHDELIGKTGVLVESDVEDTLIRPAAVPERLEEQITDKDLNATVSRSVFEVDYIPLWGYTSICGRRPEMEDAFATVPRFMKIPLPMLIGDRVLDGLSRRLSHLTTHFFGVYDGHGGSQVANYCRDRIHAVLAEELETFM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="78438" PGL_stop="80828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78438" e_stop="78715"/>
            <exon e_start="79892" e_stop="79977"/>
            <exon e_start="80428" e_stop="80549"/>
            <exon e_start="80628" e_stop="80828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78438" e_stop="78715" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="78716" i_stop="79891" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79892" e_stop="79977" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79978" i_stop="80427" i_length="450"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80428" e_stop="80549" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80550" i_stop="80627" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80628" e_stop="80828" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78438" stop="78715"/>
              <exon start="79892" stop="79968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78440" stop="78715"/>
              <exon start="79892" stop="79977"/>
              <exon start="80428" stop="80549"/>
              <exon start="80628" stop="80816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78445" stop="78715"/>
              <exon start="79892" stop="79977"/>
              <exon start="80428" stop="80549"/>
              <exon start="80628" stop="80828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78445" stop="78715"/>
              <exon start="79892" stop="79977"/>
              <exon start="80428" stop="80549"/>
              <exon start="80628" stop="80816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78451" stop="78715"/>
              <exon start="79892" stop="79977"/>
              <exon start="80428" stop="80549"/>
              <exon start="80628" stop="80660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78493" stop="78715"/>
              <exon start="79892" stop="79976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG : GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATCAGAAGATTCAAT</gDNA_template>
            <first_frame> S  N  V  K  E  K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  C  H  Q  H  C  S  W  C  I  V  *  E  C  S  W  Q  :  E  I  L  D  S  *  C  A  N  I  G  K  *  G  C  T  R  V  L  F  C  L  R  S  F  K  R  Q  A  T  I  C  P  T  S  S  K  I  S  S  F  L  C  T  S  K  T  T  I  F  V  S  M  V  S  T  *  V  K  *  L  W  I  R  R  F  N </first_frame>
            <second_frame>  Q  T  *  K  K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K   : P  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S  V  T  N  I  V  L  G  A  S  S  R  S  A  L  G  R :   K  Y  W  T  H  D  V  P  T  L  V  N  K  A  A  P  E  F  C  S  V  Y  V  V  S  K  G  K  Q  Q  S  V  R  P  A  A  K  S  L  P  S  C  V  P  A  R  Q  P  S  S  S  A  W  S  A  P  R  S  S  N  S  G  S  E  D  S   </second_frame>
            <third_frame>   K  R  E  R  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T  V  S  P  T  L  F  L  V  H  R  L  G  V  L  L  A   : G  N  I  G  L  M  M  C  Q  H  W  *  I  R  L  H  Q  S  F  V  L  S  T  *  F  Q  K  A  S  N  N  L  S  D  Q  Q  Q  N  L  F  L  L  V  Y  Q  Q  D  N  H  L  R  Q  H  G  Q  H  L  G  Q  V  T  L  D  Q  K  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78547" stop="78715"/>
                    <exon start="79892" stop="79977"/>
                    <exon start="80428" stop="80549"/>
                    <exon start="80628" stop="80826"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKPTLDSNGGLSDEATQNVFTPFKAYSARKRIVVKEIVIENTEASKGLLEYINSNSVTNIVLGASSRSALGRKYWTHDVPTLVNKAAPEFCSVYVVSKGKQQSVRPAAKSLPSCVPARQPSSSAWSAPRSSNSGSEDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78451" e_stop="78719"/>
            <exon e_start="79892" e_stop="79977"/>
            <exon e_start="80418" e_stop="80502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.959" e_score="0.981"/>
          <exon-intron don_prob="0.976" acc_prob="0.740" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="78451" e_stop="78719" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.959">
            <gDNA_intron_boundary i_start="78720" i_stop="79891" i_length="1172"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="79892" e_stop="79977" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.740">
            <gDNA_intron_boundary i_start="79978" i_stop="80417" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80418" e_stop="80502" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78451" stop="78719"/>
              <exon start="79892" stop="79977"/>
              <exon start="80418" stop="80502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAG : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</gDNA_template>
            <first_frame> K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K  R  S :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : G  Y  C  R  *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T   </first_frame>
            <second_frame>  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  V   : A  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  V  I  A  D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  </second_frame>
            <third_frame>   K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A  *  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   L  L  Q  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78547" stop="78719"/>
                    <exon start="79892" stop="79922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKRSYFRFKWRFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="81976" PGL_stop="83333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81976" e_stop="82006"/>
            <exon e_start="82479" e_stop="82907"/>
            <exon e_start="83314" e_stop="83333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.229" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81976" e_stop="82006" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.229" acc_prob="0.820">
            <gDNA_intron_boundary i_start="82007" i_stop="82478" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82479" e_stop="82907" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="82908" i_stop="83313" i_length="406"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83314" e_stop="83333" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81976" stop="82006"/>
              <exon start="82479" stop="82907"/>
              <exon start="83314" stop="83333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCG : GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG : GTTGAGGTCCTCAGTCTCAT</gDNA_template>
            <first_frame> L  Q  R  S  G  R  G  Q  P  S   : G  *  *  A  *  *  M  E  N  *  R  S  S  Q  V  R  T  S  A  F  C  *  R  G  G  S  C  N  C  *  D  R  K  G  E  M  Q  S  C  Y  R  S  C  *  E  S  T  K  D  G  *  N  R  S  A  K  K  E  V  C  R  V  E  S  *  A  R  G  R  K  K  E  T  S  N  *  C  S  I  S  E  *  Y  T  L  *  E  V  Y  N  R  R  D  *  G  S  H  Q  K  V  L  K  C  T  K  N  W  R  R  W  I  W  T  C  F  *  G  *  T  R  S  H  T  C  C  H  *  S  S  E  S  *  C  C  T  R  E  E  T  V  P  T  R   : G  *  G  P  Q  S  H </first_frame>
            <second_frame>  C  K  E  A  V  V  A  N  Q  A  :  A  D  E  L  N  K  W  K  I  E  E  A  R  K  F  E  Q  A  R  F  A  E  E  A  A  L  A  I  A  E  T  E  K  A  K  C  R  A  A  I  E  A  A  K  K  A  Q  K  M  A  E  I  E  A  Q  R  R  K  Y  A  E  L  K  A  K  R  E  A  E  K  K  K  Q  A  I  N  V  R  S  Q  N  D  I  R  Y  R  K  Y  T  I  E  E  I  E  A  A  T  K  K  F  S  N  A  Q  K  I  G  E  G  G  Y  G  P  V  F  K  G  K  L  D  H  T  P  V  A  I  K  V  L  S  P  D  A  A  Q  G  K  K  Q  F  Q  Q  E  :  V  E  V  L  S  L   </second_frame>
            <third_frame>   A  K  K  R  S  W  P  T  K  R :   L  M  S  L  I  N  G  K  L  K  K  L  A  S  S  N  K  R  V  L  L  K  R  R  L  L  Q  L  L  R  P  K  R  R  N  A  E  L  L  S  K  L  L  R  K  H  K  R  W  L  K  *  K  R  K  E  G  S  M  Q  S  *  K  L  S  E  R  Q  K  K  R  N  K  Q  L  M  F  D  L  R  M  I  Y  V  I  G  S  I  Q  *  K  R  L  R  Q  P  P  K  S  S  Q  M  H  K  K  L  E  K  V  D  M  D  L  F  L  R  V  N  *  I  T  H  L  L  P  L  K  F  *  V  L  M  L  H  K  G  R  N  S  S  N  K  R :   L  R  S  S  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81977" stop="82006"/>
                    <exon start="82479" stop="82907"/>
                    <exon start="83314" stop="83331"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKEAVVANQAADELNKWKIEEARKFEQARFAEEAALAIAETEKAKCRAAIEAAKKAQKMAEIEAQRRKYAELKAKREAEKKKQAINVRSQNDIRYRKYTIEEIEAATKKFSNAQKIGEGGYGPVFKGKLDHTPVAIKVLSPDAAQGKKQFQQEVEVLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="87001" PGL_stop="91438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87001" e_stop="87110"/>
            <exon e_start="88541" e_stop="88601"/>
            <exon e_start="88778" e_stop="88884"/>
            <exon e_start="88973" e_stop="89403"/>
            <exon e_start="90547" e_stop="91438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.396" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.033" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.807" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87001" e_stop="87110" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.396">
            <gDNA_intron_boundary i_start="87111" i_stop="88540" i_length="1430"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88541" e_stop="88601" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88602" i_stop="88777" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88778" e_stop="88884" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.033">
            <gDNA_intron_boundary i_start="88885" i_stop="88972" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88973" e_stop="89403" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.807">
            <gDNA_intron_boundary i_start="89404" i_stop="90546" i_length="1143"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="90547" e_stop="91438" e_length="892"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87001" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87007" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87007" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87015" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="88980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87016" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87016" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87017" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87017" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87019" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87019" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87020" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87022" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87022" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87022" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87025" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87026" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87029" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87030" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87036" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87066" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87066" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87066" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87071" stop="87110"/>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89403"/>
              <exon start="90547" stop="90760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88541" stop="88601"/>
              <exon start="88778" stop="88884"/>
              <exon start="88973" stop="89347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88780" stop="88884"/>
              <exon start="88973" stop="89229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89139" stop="89403"/>
              <exon start="90547" stop="91007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89368" stop="89403"/>
              <exon start="90547" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89372" stop="89403"/>
              <exon start="90547" stop="91047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90549" stop="90953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90644" stop="91128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90644" stop="91062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90753" stop="91436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90977" stop="91438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91014" stop="91435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA : TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT : GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG : GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</gDNA_template>
            <first_frame> L  N  S  A  A  *  I  R  G  V  F  V  K  L  Q  S  L  K  T  L  I  L  K  S  F  R  S  F  F  D  K  L  Q  I  T  I  N :   H  G  S  R  R  F  S  V  *  C  S  S  I  R  C  K  N  D  R  T  :  A  W  Y  *  T  T  G  I  L  H  I  I  *  *  G  S  R  Q  F  *  C  H  G  F  A  R  K  S  P  E  G  H  L  C  L  W :   F  *  E  A  I  C  Y  S  A  K  G  H  C  S  F  L  Q  G  P  *  C  H  P  A  G  T  I  W  Y  W  K  D  G  N  F  L  L  W  N  S  P  A  A  *  L  Q  F  S  *  V  S  G  S  G  S  C  T  N  P  *  A  C  T  T  D  *  E  G  Y  E  S  T  W  *  L  P  G  C  E  G  S  C  L  C  W  G  Y  Q  C  P  *  G  S  A  H  P  S  E  R  C  S  C  C  G  W  Y  S  R  P  C  L  *  H  V  A  Q  A  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  R  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H  P  E  R  H  L  C  *  H  *  A  K  G  *  L  A  H  *  *  N  A  W  T  *  P  H  S  I  C  N  S  W  R  H  G  S  E  H  K  R  Y  H  H  E  G  V  P  I  W  L  I  S  C  A  Y  H  N  R  S  P  C  S  W  Y  *  C  P  T  S  L  P  C  Y  *  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  H  Q  G  *  *  K  D  A  F  *  H  T  E  V  L  Q  R  R  N  *  G  A  P  S  Q  C  C  *  S  P  L  R  R  F  L  V  Y  L  F  L  D  L  V  S  V  C  T  R  L  G  I  R  K  C  W  *  P  W  F  A  T  A  P  V  P  F  L  I  Q  M  K  P  F  F  F  F  A  N  F  V  W  F  V  I  L  Y  L  *  S  I  Q  I  T  L  Y  L  V  L  F  E  L  F  N  *  S  I  S  L  W  K  V  K  L  L  V  G   </first_frame>
            <second_frame>  S  T  P  R  R  R  S  E  E  F  L  *  N  C  S  L  *  K  P  *  F  S  N  L  S  D  L  S  L  T  N  F  K  S  P  S   : I  M  A  A  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  E  F  F  T  S  Y  D  E  V  H  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  I  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  D  F  W  Y  I  Y  S  *  I  *  Y  Q  F  V  L  D  L  E  L  G  N  A  G  S  H  G  L  P  Q  H  Q  F  L  S  *  F  K  *  N  L  F  F  F  L  Q  I  L  F  G  L  S  F  Y  T  F  K  V  S  K  *  L  C  I  W  C  C  L  N  C  L  I  D  L  F  P  Y  G  R  *  S  F  *  L  D  </second_frame>
            <third_frame>   Q  L  R  G  V  D  P  R  S  F  C  K  T  A  V  F  E  N  P  N  S  Q  I  F  Q  I  F  L  *  Q  T  S  N  H  H  Q  :  S  W  Q  Q  K  V  L  S  L  M  L  V  N  S  M  Q  K  *  Q  N   : C  L  V  L  N  N  R  N  S  S  H  H  M  M  R  F  T  T  V  L  M  P  W  V  C  K  K  I  S  *  G  A  S  M  P  M  :  V  L  R  S  H  L  L  F  S  K  G  A  L  F  L  F  A  R  A  L  M  S  S  S  R  H  N  L  V  L  E  R  R  Q  L  S  A  L  E  F  S  S  S  L  I  T  V  *  L  S  V  R  L  W  F  L  H  Q  P  V  S  L  H  N  R  L  R  R  L  *  E  H  L  V  T  T  W  V  *  R  F  M  L  V  L  G  V  P  V  S  V  R  I  S  A  S  F  R  A  V  F  M  L  W  L  V  L  Q  A  V  S  L  T  C  C  A  G  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  T  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P  R  A  S  S  L  L  T  L  G  E  R  L  T  G  S  L  I  K  C  V  D  V  T  T  Q  Y  L  Q  L  M  E  T  W  I  R  T  Q  E  I  S  S  *  G  S  S  D  L  A  H  L  V  C  L  S  Q  P  I  S  L  L  V  V  L  M  S  N  K  S  P  L  L  L  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  S  P  R  M  M  K  G  C  F  L  T  Y  R  S  F  T  T  S  *  L  R  S  S  Q  P  M  L  L  I  S  S  K  A  I  F  G  I  F  I  L  R  F  S  I  S  L  Y  *  T  W  N  *  E  M  L  V  A  M  V  C  H  S  T  S  S  F  P  D  S  N  E  T  F  F  F  F  C  K  F  C  L  V  C  H  F  I  P  L  K  Y  P  N  N  F  V  F  G  V  V  *  I  V  *  L  I  Y  F  P  M  E  G  K  A  F  S  W  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87062" stop="87110"/>
                    <exon start="88541" stop="88601"/>
                    <exon start="88778" stop="88884"/>
                    <exon start="88973" stop="89403"/>
                    <exon start="90547" stop="91182"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNLSDLSLTNFKSPSIMAAEGSQFDARQFDAKMTELLGTEQQEFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90332" e_stop="91438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="90332" e_stop="91438" e_length="1107"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90332" stop="90781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90340" stop="90751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90340" stop="90717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90549" stop="90953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90644" stop="91128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90644" stop="91062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90753" stop="91436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90977" stop="91438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91014" stop="91435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</gDNA_template>
            <first_frame> M  C  R  S  L  F  L  L  *  F  S  I  C  L  T  I  Y  A  S  Y  *  S  A  C  W  R  V  L  P  P  P  K  L  *  L  *  C  A  L  T  N  L  C  Q  Q  L  L  P  H  L  S  G  L  F  L  L  C  F  D  D  L  T  F  P  M  T  Q  I  L  F  S  R  F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P  R  A  S  S  L  L  T  L  G  E  R  L  T  G  S  L  I  K  C  V  D  V  T  T  Q  Y  L  Q  L  M  E  T  W  I  R  T  Q  E  I  S  S  *  G  S  S  D  L  A  H  L  V  C  L  S  Q  P  I  S  L  L  V  V  L  M  S  N  K  S  P  L  L  L  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  S  P  R  M  M  K  G  C  F  L  T  Y  R  S  F  T  T  S  *  L  R  S  S  Q  P  M  L  L  I  S  S  K  A  I  F  G  I  F  I  L  R  F  S  I  S  L  Y  *  T  W  N  *  E  M  L  V  A  M  V  C  H  S  T  S  S  F  P  D  S  N  E  T  F  F  F  F  C  K  F  C  L  V  C  H  F  I  P  L  K  Y  P  N  N  F  V  F  G  V  V  *  I  V  *  L  I  Y  F  P  M  E  G  K  A  F  S  W  I </first_frame>
            <second_frame>  C  V  G  L  S  F  F  Y  N  F  Q  F  A  *  Q  Y  M  P  V  I  D  Q  L  V  G  E  S  S  L  P  P  N  C  S  F  D  V  L  *  L  T  F  V  N  N  C  C  H  I  F  L  V  Y  S  S  F  V  L  M  I  *  L  F  P  *  H  K  Y  Y  F  P  D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H  P  E  R  H  L  C  *  H  *  A  K  G  *  L  A  H  *  *  N  A  W  T  *  P  H  S  I  C  N  S  W  R  H  G  S  E  H  K  R  Y  H  H  E  G  V  P  I  W  L  I  S  C  A  Y  H  N  R  S  P  C  S  W  Y  *  C  P  T  S  L  P  C  Y  *  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  H  Q  G  *  *  K  D  A  F  *  H  T  E  V  L  Q  R  R  N  *  G  A  P  S  Q  C  C  *  S  P  L  R  R  F  L  V  Y  L  F  L  D  L  V  S  V  C  T  R  L  G  I  R  K  C  W  *  P  W  F  A  T  A  P  V  P  F  L  I  Q  M  K  P  F  F  F  F  A  N  F  V  W  F  V  I  L  Y  L  *  S  I  Q  I  T  L  Y  L  V  L  F  E  L  F  N  *  S  I  S  L  W  K  V  K  L  L  V  G   </second_frame>
            <third_frame>   V  *  V  S  L  S  F  I  I  F  N  L  L  D  N  I  C  Q  L  L  I  S  L  L  A  S  P  P  S  P  Q  I  V  A  L  M  C  S  N  *  P  L  S  T  I  A  A  T  S  F  W  F  I  P  P  L  F  *  *  F  N  F  S  H  D  T  N  I  I  F  Q  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  D  F  W  Y  I  Y  S  *  I  *  Y  Q  F  V  L  D  L  E  L  G  N  A  G  S  H  G  L  P  Q  H  Q  F  L  S  *  F  K  *  N  L  F  F  F  L  Q  I  L  F  G  L  S  F  Y  T  F  K  V  S  K  *  L  C  I  W  C  C  L  N  C  L  I  D  L  F  P  Y  G  R  *  S  F  *  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90511" stop="91182"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFSHDTNIIFQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="93589" PGL_stop="90933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91441" e_stop="90965"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="91441" e_stop="90965" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91441" stop="90965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91441" stop="91210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATAC</gDNA_template>
            <first_frame> D  N  P  T  K  S  F  T  F  H  R  E  I  D  Q  L  N  N  S  N  N  T  K  Y  K  V  I  W  I  L  *  R  Y  K  M  T  N  Q  T  K  F  A  K  K  K  K  G  F  I  *  I  R  K  G  T  G  A  V  A  N  H  G  Y  Q  H  F  L  I  P  S  L  V  Q  T  D  T  K  S  K  N  K  Y  T  K  N  R  L  R  G  D  Q  Q  H  W  L  G  A  P  Q  L  R  R  C  K  T  S  V  C  Q  K  A  S  F  H  H  P  W  *  Q  S  *  *  Q  H  P  S  F  Q  I  V  H  Y  D  Q  Y  D  A  G  S  F  L  V  E  L  A  G  H  S  *  *  Q  G  R  L  V  G  H  Q  Y </first_frame>
            <second_frame>  I  I  Q  L  K  A  L  P  S  I  G  K  *  I  N  *  T  I  Q  T  T  P  N  T  K  L  F  G  Y  F  K  G  I  K  *  Q  T  K  Q  N  L  Q  K  K  K  K  V  S  F  E  S  G  K  E  L  V  L  W  Q  T  M  A  T  S  I  S  *  F  Q  V  *  Y  K  L  I  L  N  L  R  I  N  I  P  K  I  A  L  E  E  I  S  N  I  G  W  E  L  L  N  Y  D  V  V  K  L  L  Y  V  K  K  H  P  F  I  I  L  G  D  K  V  D  S  N  T  L  P  S  K  S  S  T  T  T  N  T  M  Q  V  V  F  W  L  S  W  Q  V  I  V  N  N  K  G  D  L  L  D  I  N   </second_frame>
            <third_frame>   *  S  N  *  K  L  Y  L  P  *  G  N  R  S  I  K  Q  F  K  Q  H  Q  I  Q  S  Y  L  D  T  L  K  V  *  N  D  K  P  N  K  I  C  K  K  K  K  R  F  H  L  N  Q  E  R  N  W  C  C  G  K  P  W  L  P  A  F  P  N  S  K  S  S  T  N  *  Y  *  I  *  E  *  I  Y  Q  K  S  P  *  R  R  S  A  T  L  A  G  S  S  S  I  T  T  L  *  N  F  C  M  S  K  S  I  L  S  S  S  L  V  T  K  L  I  A  T  P  F  L  P  N  R  P  L  R  P  I  R  C  R  *  F  S  G  *  V  G  R  S  *  L  I  T  R  E  T  C  W  T  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91227" stop="90967"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILNLRINIPKIALEEISNIGWELLNYDVVKLLYVKKHPFIILGDKVDSNTLPSKSSTTTNTMQVVFWLSWQVIVNNKGDLLDIN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91291" stop="91088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRKGTGAVANHGYQHFLIPSLVQTDTKSKNKYTKNRLRGDQQHWLGAPQLRRCKTSVCQKASFHHPW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93589" e_stop="93499"/>
            <exon e_start="91369" e_stop="90933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93589" e_stop="93499" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93498" i_stop="91370" i_length="2129"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="91369" e_stop="90933" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93589" stop="93499"/>
              <exon start="91369" stop="90933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711255" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC : AAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : Q  S  Y  L  D  T  L  K  V  *  N  D  K  P  N  K  I  C  K  K  K  K  R  F  H  L  N  Q  E  R  N  W  C  C  G  K  P  W  L  P  A  F  P  N  S  K  S  S  T  N  *  Y  *  I  *  E  *  I  Y  Q  K  S  P  *  R  R  S  A  T  L  A  G  S  S  S  I  T  T  L  *  N  F  C  M  S  K  S  I  L  S  S  S  L  V  T  K  L  I  A  T  P  F  L  P  N  R  P  L  R  P  I  R  C  R  *  F  S  G  *  V  G  R  S  *  L  I  T  R  E  T  C  W  T  S  I  P  R  A  R  R  S  V  V  I  S  T </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  K  V  I  W  I  L  *  R  Y  K  M  T  N  Q  T  K  F  A  K  K  K  K  G  F  I  *  I  R  K  G  T  G  A  V  A  N  H  G  Y  Q  H  F  L  I  P  S  L  V  Q  T  D  T  K  S  K  N  K  Y  T  K  N  R  L  R  G  D  Q  Q  H  W  L  G  A  P  Q  L  R  R  C  K  T  S  V  C  Q  K  A  S  F  H  H  P  W  *  Q  S  *  *  Q  H  P  S  F  Q  I  V  H  Y  D  Q  Y  D  A  G  S  F  L  V  E  L  A  G  H  S  *  *  Q  G  R  L  V  G  H  Q  Y  H  E  Q  G  D  R  L  *  *  A   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S :   K  L  F  G  Y  F  K  G  I  K  *  Q  T  K  Q  N  L  Q  K  K  K  K  V  S  F  E  S  G  K  E  L  V  L  W  Q  T  M  A  T  S  I  S  *  F  Q  V  *  Y  K  L  I  L  N  L  R  I  N  I  P  K  I  A  L  E  E  I  S  N  I  G  W  E  L  L  N  Y  D  V  V  K  L  L  Y  V  K  K  H  P  F  I  I  L  G  D  K  V  D  S  N  T  L  P  S  K  S  S  T  T  T  N  T  M  Q  V  V  F  W  L  S  W  Q  V  I  V  N  N  K  G  D  L  L  D  I  N  T  T  S  K  E  I  G  C  D  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91227" stop="90934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILNLRINIPKIALEEISNIGWELLNYDVVKLLYVKKHPFIILGDKVDSNTLPSKSSTTTNTMQVVFWLSWQVIVNNKGDLLDINTTSKEIGCDKH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="93124" PGL_stop="100154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93124" e_stop="93278"/>
            <exon e_start="95749" e_stop="95817"/>
            <exon e_start="95943" e_stop="96049"/>
            <exon e_start="96138" e_stop="96568"/>
            <exon e_start="97250" e_stop="98173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93124" e_stop="93278" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95749" e_stop="95817" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95943" e_stop="96049" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96138" e_stop="96568" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97250" e_stop="98173" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93124" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93140" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="98088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93146" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280066" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93150" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93152" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93161" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93169" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93169" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93174" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93181" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93185" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93186" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93208" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93209" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95978" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95986" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96142" stop="96568"/>
              <exon start="97250" stop="97738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96142" stop="96568"/>
              <exon start="97250" stop="97735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96195" stop="96568"/>
              <exon start="97250" stop="97628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96200" stop="96568"/>
              <exon start="97250" stop="97794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96228" stop="96568"/>
              <exon start="97250" stop="97391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96287" stop="96568"/>
              <exon start="97250" stop="97827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96419" stop="96568"/>
              <exon start="97250" stop="97676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96545" stop="96568"/>
              <exon start="97250" stop="98091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97250" stop="97673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97295" stop="97973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97295" stop="97476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97431" stop="97900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97439" stop="97920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97439" stop="97842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97717" stop="98096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97717" stop="98096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97960" stop="98173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  Y  A  A  *  I  R  G  V  F  G  K  K  L  Q  S  L  Q  T  L  I  L  K  N  P  L  F  L  K  S  S  D  L  S  L  T  I  F  L  L  A  T  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  T  T  R  R  R  S  E  E  F  L  E  K  S  C  S  L  Y  K  P  *  F  S  R  I  P  F  F  S  N  L  Q  I  S  L  *  Q  S  S  C  *  L  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  E  L  R  G  V  D  P  R  S  F  W  K  K  A  A  V  F  T  N  P  N  S  Q  E  S  P  F  S  Q  I  F  R  S  L  F  N  N  L  L  V  S  Y  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93166" stop="93278"/>
                    <exon start="95749" stop="95817"/>
                    <exon start="95943" stop="96049"/>
                    <exon start="96138" stop="96568"/>
                    <exon start="97250" stop="97885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1353</number_coding_nucleotides>
                  <number_encoded_amino_acids>451</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRGVFGKKLQSLQTLILKNPLFLKSSDLSLTIFLLATSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93124" e_stop="93278"/>
            <exon e_start="95749" e_stop="95817"/>
            <exon e_start="95943" e_stop="96049"/>
            <exon e_start="96138" e_stop="96568"/>
            <exon e_start="97250" e_stop="98088"/>
            <exon e_start="99551" e_stop="100154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93124" e_stop="93278" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95749" e_stop="95817" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95943" e_stop="96049" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96138" e_stop="96568" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97250" e_stop="98088" e_length="839"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98089" i_stop="99550" i_length="1462"/>
          </intron>
          <exon e_serial="6" e_score="0.954">
            <gDNA_exon_boundary e_start="99551" e_stop="100154" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93124" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93140" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="98088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93146" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280066" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93150" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93152" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93161" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93169" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93169" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93174" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93181" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93185" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93186" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93208" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93209" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95978" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95986" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96142" stop="96568"/>
              <exon start="97250" stop="97738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96142" stop="96568"/>
              <exon start="97250" stop="97735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96195" stop="96568"/>
              <exon start="97250" stop="97628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96200" stop="96568"/>
              <exon start="97250" stop="97794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96228" stop="96568"/>
              <exon start="97250" stop="97391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96287" stop="96568"/>
              <exon start="97250" stop="97827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96419" stop="96568"/>
              <exon start="97250" stop="97676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97250" stop="97673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97295" stop="97973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97295" stop="97476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97431" stop="97900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97439" stop="97920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97439" stop="97842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98020" stop="98088"/>
              <exon start="99551" stop="100154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539253" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAT : ATTTATTAAGAATAATATATCAAACTCTTTTTTTTTTTTTTGCTTTTTGGTATATTATAATTATATCAAACACTATATTTCACCAAAAAAAATCTACATAAAACCATTTTCCCCCTCAATTTGCCTCATCTCTACTAAATAAATAGTATAGTATAATATTATTATGAATAAATTGCAAAAATCAAGCAAATAATTGATAAATAAAAATAAAAACAACGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTACATTTAACTATCTCGATTTTTTGAATTTTCTATCCAAATTATCACGTGTTTGCTTTTTCTATCCGAATTATAACCAATTATTTATCAAAACATACGTAAGCTATAGCCATTCACGTTTTCTACCTGAATTATTACCGTATTAAGGTAGAAAAAAGTGAAAACGTATGGTTAACGTGTGATTCGATAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCACACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGTCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAG</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  Y  A  A  *  I  R  G  V  F  G  K  K  L  Q  S  L  Q  T  L  I  L  K  N  P  L  F  L  K  S  S  D  L  S  L  T  I  F  L  L  A  T  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  I :   F  I  K  N  N  I  S  N  S  F  F  F  F  C  F  L  V  Y  Y  N  Y  I  K  H  Y  I  S  P  K  K  I  Y  I  K  P  F  S  P  S  I  C  L  I  S  T  K  *  I  V  *  Y  N  I  I  M  N  K  L  Q  K  S  S  K  *  L  I  N  K  N  K  N  N  E  K  *  V  K  E  *  K  K  K  N  Y  I  *  L  S  R  F  F  E  F  S  I  Q  I  I  T  C  L  L  F  L  S  E  L  *  P  I  I  Y  Q  N  I  R  K  L  *  P  F  T  F  S  T  *  I  I  T  V  L  R  *  K  K  V  K  T  Y  G  *  R  V  I  R  *  I  F  D  H  T  S  N  K  K  G  P  P  H  R  *  I  I  H  R  D  N  L  D  V  F  F  A  L  R  S  S  R  K  N  E  F  R  R  S  I  L  R  S  S  Y  V  N  Q  P  Y  I  *  H  L  * </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  T  T  R  R  R  S  E  E  F  L  E  K  S  C  S  L  Y  K  P  *  F  S  R  I  P  F  F  S  N  L  Q  I  S  L  *  Q  S  S  C  *  L  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *   : Y  L  L  R  I  I  Y  Q  T  L  F  F  F  F  A  F  W  Y  I  I  I  I  S  N  T  I  F  H  Q  K  K  S  T  *  N  H  F  P  P  Q  F  A  S  S  L  L  N  K  *  Y  S  I  I  L  L  *  I  N  C  K  N  Q  A  N  N  *  *  I  K  I  K  T  T  K  N  K  L  K  S  K  K  K  K  T  T  F  N  Y  L  D  F  L  N  F  L  S  K  L  S  R  V  C  F  F  Y  P  N  Y  N  Q  L  F  I  K  T  Y  V  S  Y  S  H  S  R  F  L  P  E  L  L  P  Y  *  G  R  K  K  *  K  R  M  V  N  V  *  F  D  K  Y  L  I  I  L  Q  I  K  K  D  L  H  T  D  K  *  F  I  E  I  I  *  M  C  F  S  P  F  A  R  P  E  K  M  N  L  E  G  P  F  *  D  L  H  T  *  I  S  L  T  F  S  I  C   </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  E  L  R  G  V  D  P  R  S  F  W  K  K  A  A  V  F  T  N  P  N  S  Q  E  S  P  F  S  Q  I  F  R  S  L  F  N  N  L  L  V  S  Y  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  :  I  Y  *  E  *  Y  I  K  L  F  F  F  F  L  L  F  G  I  L  *  L  Y  Q  T  L  Y  F  T  K  K  N  L  H  K  T  I  F  P  L  N  L  P  H  L  Y  *  I  N  S  I  V  *  Y  Y  Y  E  *  I  A  K  I  K  Q  I  I  D  K  *  K  *  K  Q  R  K  I  S  *  R  V  K  K  K  K  L  H  L  T  I  S  I  F  *  I  F  Y  P  N  Y  H  V  F  A  F  S  I  R  I  I  T  N  Y  L  S  K  H  T  *  A  I  A  I  H  V  F  Y  L  N  Y  Y  R  I  K  V  E  K  S  E  N  V  W  L  T  C  D  S  I  N  I  *  S  Y  F  K  *  K  R  T  S  T  P  I  N  N  S  S  R  *  F  R  C  V  F  R  P  S  L  V  P  K  K  *  I  *  K  V  H  F  K  I  F  I  R  K  S  A  L  H  L  A  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93166" stop="93278"/>
                    <exon start="95749" stop="95817"/>
                    <exon start="95943" stop="96049"/>
                    <exon start="96138" stop="96568"/>
                    <exon start="97250" stop="97885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1353</number_coding_nucleotides>
                  <number_encoded_amino_acids>451</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRGVFGKKLQSLQTLILKNPLFLKSSDLSLTIFLLATSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99751" stop="99945"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKIKTTKNKLKSKKKKTTFNYLDFLNFLSKLSRVCFFYPNYNQLFIKTYVSYSHSRFLPELLPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="93124" e_stop="93278"/>
            <exon e_start="95749" e_stop="95817"/>
            <exon e_start="95943" e_stop="96049"/>
            <exon e_start="96138" e_stop="96568"/>
            <exon e_start="97250" e_stop="97503"/>
            <exon e_start="97648" e_stop="97705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93124" e_stop="93278" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93279" i_stop="95748" i_length="2470"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95749" e_stop="95817" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="95818" i_stop="95942" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95943" e_stop="96049" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="96050" i_stop="96137" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96138" e_stop="96568" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="96569" i_stop="97249" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="97250" e_stop="97503" e_length="254"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97504" i_stop="97647" i_length="144"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97648" e_stop="97705" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93124" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93135" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93140" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93143" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93146" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280066" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93150" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93152" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93161" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93166" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93169" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93169" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93174" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93181" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93185" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93186" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93208" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93209" stop="93278"/>
              <exon start="95749" stop="95817"/>
              <exon start="95943" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95978" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95986" stop="96049"/>
              <exon start="96138" stop="96568"/>
              <exon start="97250" stop="97459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96228" stop="96568"/>
              <exon start="97250" stop="97391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96403" stop="96568"/>
              <exon start="97250" stop="97503"/>
              <exon start="97648" stop="97705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97295" stop="97476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAA : CACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTAT</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  Y  A  A  *  I  R  G  V  F  G  K  K  L  Q  S  L  Q  T  L  I  L  K  N  P  L  F  L  K  S  S  D  L  S  L  T  I  F  L  L  A  T  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N :   T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  T  T  R  R  R  S  E  E  F  L  E  K  S  C  S  L  Y  K  P  *  F  S  R  I  P  F  F  S  N  L  Q  I  S  L  *  Q  S  S  C  *  L  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S   : T  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T   </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  E  L  R  G  V  D  P  R  S  F  W  K  K  A  A  V  F  T  N  P  N  S  Q  E  S  P  F  S  Q  I  F  R  S  L  F  N  N  L  L  V  S  Y  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  :  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93166" stop="93278"/>
                    <exon start="95749" stop="95817"/>
                    <exon start="95943" stop="96049"/>
                    <exon start="96138" stop="96568"/>
                    <exon start="97250" stop="97503"/>
                    <exon start="97648" stop="97705"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1032</number_coding_nucleotides>
                  <number_encoded_amino_acids>344</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRGVFGKKLQSLQTLILKNPLFLKSSDLSLTIFLLATSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTDLLARGIDVQQVSLVINY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="97249" e_stop="98173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="97249" e_stop="98173" e_length="925"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97249" stop="98064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97250" stop="97673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97295" stop="97973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97295" stop="97476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97431" stop="97900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97439" stop="97920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97439" stop="97842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97717" stop="98096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97717" stop="98096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97960" stop="98173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </first_frame>
            <second_frame>  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </second_frame>
            <third_frame>   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97250" stop="97885"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="100939" PGL_stop="99635"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100939" e_stop="99635"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100939" e_stop="99635" e_length="1305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100939" stop="100679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100927" stop="100192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100926" stop="100360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100342" stop="99635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100341" stop="99787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTT</gDNA_template>
            <first_frame> K  N  G  *  Q  S  S  P  F  S  *  A  K  W  Q  R  C  Q  Y  Y  R  C  R  C  G  G  R  Q  S  Q  S  R  R  E  A  A  A  I  S  S  S  G  G  E  E  P  N  V  Q  P  E  S  H  P  L  P  T  N  S  N  C  L  P  P  T  Q  S  P  P  L  H  L  P  P  V  L  L  L  L  L  F  L  V  T  P  L  H  L  H  R  P  P  P  R  H  N  R  R  R  R  F  L  L  P  I  P  S  K  T  S  G  I  L  R  F  L  T  Q  N  H  P  I  Q  T  H  H  Y  L  R  R  H  Y  T  P  H  R  *  A  Q  S  H  T  L  H  *  K  P  *  Q  K  A  D  L  Q  L  R  S  N  F  L  N  C  K  L  E  F  S  S  T  S  *  W  I  V  H  R  I  Q  Q  R  S  *  *  H  H  N  H  S  L  N  S  I  N  G  V  S  S  A  R  C  G  F  N  F  I  V  E  I  R  S  E  K  K  K  W  I  T  D  E  D  L  V  G  Y  N  G  A  S  E  N  G  *  I  E  K  *  G  S  R  D  Q  S  Y  L  *  R  N  P  W  K  N  S  D  G  E  N  S  G  G  G  F  N  Y  K  C  *  M  *  G  *  F  T  Y  E  D  L  K  M  D  L  L  N  S  F  F  R  D  E  R  R  A  K  N  T  S  K  L  S  R  *  I  I  Y  R  C  G  G  P  F  L  F  E  V  *  S  N  I  Y  R  I  T  R  *  P  Y  V  F  T  F  F  Y  L  N  T  V  I  I  Q  V  E  N  V  N  G  Y  S  L  R  M  F  *  *  I  I  G  Y  N  S  D  R  K  S  K  H  V  I  I  W  I  E  N  S  K  N  R  D  S  *  M  *  F  F  F  F  Y  S  L  T  Y  F  S  L  F  L  F  L  F  I  N  Y  L  L  D  F  C  N  L  F  I  I  I  L  Y  Y  T  I  Y  L  V  E  M  R  Q  I  E  G  E  N  G  F  M  *  I  F  F </first_frame>
            <second_frame>  K  M  A  D  R  V  H  P  S  A  K  P  N  G  N  A  A  N  I  T  G  A  A  A  A  A  V  N  P  K  A  A  A  K  P  P  Q  F  P  P  P  A  A  K  N  Q  M  Y  N  P  N  R  I  P  Y  R  P  T  P  T  A  Y  H  R  H  N  R  R  R  C  T  C  R  R  C  F  C  F  C  C  F  W  S  L  L  F  I  C  T  V  L  L  L  A  T  I  A  G  A  G  F  Y  F  L  F  R  P  K  P  P  A  F  S  V  S  S  L  K  I  I  Q  F  K  L  T  T  T  S  D  D  T  T  H  L  T  V  K  L  N  L  T  L  S  T  K  N  P  N  K  K  L  I  Y  S  Y  D  P  I  S  L  T  V  N  S  N  S  V  L  L  A  N  G  S  F  T  G  F  N  S  G  P  N  N  I  T  I  I  H  S  T  L  S  M  A  S  Q  V  L  D  A  D  S  I  S  S  L  K  S  D  L  K  R  K  N  G  L  P  M  K  I  L  L  D  T  M  V  L  A  K  M  D  K  L  K  S  K  E  V  G  I  R  V  T  C  D  G  I  H  G  R  I  P  T  G  K  T  P  A  V  A  S  T  T  N  A  K  C  K  A  D  L  R  M  K  I  L  K  W  T  F  *  I  H  F  F  G  T  S  E  G  R  K  T  H  L  N  Y  L  D  E  L  F  I  G  V  E  V  L  F  Y  L  K  Y  D  Q  I  F  I  E  S  H  V  N  H  T  F  S  L  F  S  T  L  I  R  *  *  F  R  *  K  T  *  M  A  I  A  Y  V  C  F  D  K  *  L  V  I  I  R  I  E  K  A  N  T  *  *  F  G  *  K  I  Q  K  I  E  I  V  K  C  S  F  F  F  F  T  L  *  L  I  F  R  C  F  Y  F  Y  L  S  I  I  C  L  I  F  A  I  Y  S  *  *  Y  Y  T  I  L  F  I  *  *  R  *  G  K  L  R  G  K  M  V  L  C  R  F  F   </second_frame>
            <third_frame>   K  W  L  T  E  F  T  L  Q  L  S  Q  M  A  T  L  P  I  L  P  V  P  L  R  R  P  S  I  P  K  P  P  R  S  R  R  N  F  L  L  R  R  R  R  T  K  C  T  T  R  I  A  S  L  T  D  Q  L  Q  L  P  T  T  D  T  I  A  A  V  A  P  A  A  G  A  S  A  S  V  V  S  G  H  S  S  S  S  A  P  S  S  S  S  P  Q  S  P  A  P  V  S  T  S  Y  S  V  Q  N  L  R  H  S  P  F  P  H  S  K  S  S  N  S  N  S  P  L  P  P  T  T  L  H  T  S  P  L  S  S  I  S  H  S  P  L  K  T  L  T  K  S  *  F  T  V  T  I  Q  F  P  *  L  *  T  R  I  Q  F  Y  *  L  M  D  R  S  Q  D  S  T  A  V  L  I  T  S  Q  S  F  T  Q  L  Y  Q  W  R  L  K  C  S  M  R  I  Q  F  H  R  *  N  Q  I  *  K  E  K  M  D  Y  R  *  R  S  C  W  I  Q  W  C  *  R  K  W  I  N  *  K  V  R  K  S  G  S  E  L  L  V  T  E  S  M  E  E  F  R  R  G  K  L  R  R  W  L  Q  L  Q  M  L  N  V  R  L  I  Y  V  *  R  S  *  N  G  P  S  K  F  I  F  S  G  R  A  K  G  E  K  H  I  *  I  I  S  M  N  Y  L  S  V  W  R  S  F  F  I  *  S  M  I  K  Y  L  S  N  H  T  L  T  I  R  F  H  F  F  L  P  *  Y  G  N  N  S  G  R  K  R  E  W  L  *  L  T  Y  V  L  I  N  N  W  L  *  F  G  *  K  K  Q  T  R  D  N  L  D  R  K  F  K  K  S  R  *  L  N  V  V  F  F  F  L  L  F  N  L  F  F  V  V  F  I  F  I  Y  Q  L  F  A  *  F  L  Q  F  I  H  N  N  I  I  L  Y  Y  L  F  S  R  D  E  A  N  *  G  G  K  W  F  Y  V  D  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100938" stop="100096"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADRVHPSAKPNGNAANITGAAAAAVNPKAAAKPPQFPPPAAKNQMYNPNRIPYRPTPTAYHRHNRRRCTCRRCFCFCCFWSLLFICTVLLLATIAGAGFYFLFRPKPPAFSVSSLKIIQFKLTTTSDDTTHLTVKLNLTLSTKNPNKKLIYSYDPISLTVNSNSVLLANGSFTGFNSGPNNITIIHSTLSMASQVLDADSISSLKSDLKRKNGLPMKILLDTMVLAKMDKLKSKEVGIRVTCDGIHGRIPTGKTPAVASTTNAKCKADLRMKILKWTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="100679" PGL_stop="100939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100679" e_stop="100939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100679" e_stop="100939" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100679" stop="100939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</gDNA_template>
            <first_frame> M  K  R  S  D  Q  K  Q  Q  K  Q  K  H  R  R  Q  V  Q  R  R  R  L  C  R  W  *  A  V  G  V  G  R  *  G  M  R  F  G  L  Y  I  W  F  F  A  A  G  G  G  N  C  G  G  F  A  A  A  L  G  L  T  A  A  A  A  A  P  V  I  L  A  A  L  P  F  G  L  A  E  G  *  T  L  S  A  I  F </first_frame>
            <second_frame>  *  R  G  V  T  R  N  N  R  S  R  S  T  G  G  R  C  N  G  G  D  C  V  G  G  R  Q  L  E  L  V  G  K  G  C  D  S  G  C  T  F  G  S  S  P  P  E  E  E  I  A  A  A  S  R  R  L  W  D  *  R  P  P  Q  R  H  R  *  Y  W  Q  R  C  H  L  A  *  L  K  G  E  L  C  Q  P  F   </second_frame>
            <third_frame>   E  E  E  *  P  E  T  T  E  A  E  A  P  A  A  G  A  T  A  A  I  V  S  V  V  G  S  W  S  W  S  V  R  D  A  I  R  V  V  H  L  V  L  R  R  R  R  R  K  L  R  R  L  R  G  G  F  G  I  D  G  R  R  S  G  T  G  N  I  G  S  V  A  I  W  L  S  *  R  V  N  S  V  S  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100693" stop="100914"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PETTEAEAPAAGATAAIVSVVGSWSWSVRDAIRVVHLVLRRRRRKLRRLRGGFGIDGRRSGTGNIGSVAIWLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="109149" PGL_stop="115026"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109149" e_stop="109552"/>
            <exon e_start="110384" e_stop="110652"/>
            <exon e_start="110786" e_stop="110878"/>
            <exon e_start="110966" e_stop="111037"/>
            <exon e_start="111158" e_stop="111274"/>
            <exon e_start="113712" e_stop="115026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109149" e_stop="109552" e_length="404"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110384" e_stop="110652" e_length="269"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110653" i_stop="110785" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110786" e_stop="110878" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="110879" i_stop="110965" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110966" e_stop="111037" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="111038" i_stop="111157" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111158" e_stop="111274" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="111275" i_stop="113711" i_length="2437"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="113712" e_stop="115026" e_length="1315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109149" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109152" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111037"/>
              <exon start="111158" stop="111178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109163" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111037"/>
              <exon start="111158" stop="111192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109164" stop="109552"/>
              <exon start="110384" stop="110643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109175" stop="109552"/>
              <exon start="110384" stop="110636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109176" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109178" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111037"/>
              <exon start="111158" stop="111219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109178" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109184" stop="109552"/>
              <exon start="110384" stop="110599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109185" stop="109552"/>
              <exon start="110384" stop="110488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109552"/>
              <exon start="110384" stop="110461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109458" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111037"/>
              <exon start="111158" stop="111274"/>
              <exon start="113712" stop="113962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109477" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109511" stop="109552"/>
              <exon start="110384" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="110985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110603" stop="110652"/>
              <exon start="110786" stop="110878"/>
              <exon start="110966" stop="111037"/>
              <exon start="111158" stop="111244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111014" stop="111037"/>
              <exon start="111158" stop="111274"/>
              <exon start="113712" stop="114118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111195" stop="111274"/>
              <exon start="113712" stop="114129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111197" stop="111274"/>
              <exon start="113712" stop="114458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111206" stop="111274"/>
              <exon start="113712" stop="114566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113713" stop="114617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113716" stop="114608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113823" stop="114337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113871" stop="114750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113875" stop="114522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113875" stop="114434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113875" stop="114165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113912" stop="114609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113921" stop="114697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113932" stop="114263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113944" stop="114745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113955" stop="114742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113955" stop="114706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113961" stop="114429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113980" stop="114750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113987" stop="114509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113990" stop="114340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114109" stop="114728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114269" stop="114969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114536" stop="114939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114548" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114548" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114549" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114610" stop="114939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114621" stop="114936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114685" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114708" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114751" stop="115026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTTTACAACCACTTCTCTCACTAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC : ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAGGTTCTTTCTGAG : GCCGATTCTGGTGGTTCTGGTCTAGTTTCCCGAAGATTACCTGGACAGCAATCTGGAGGGGAACAGTTTTCCTTGAAAGTCCCTAACAACAAG : GTTGGTCTTGTTATTGGAAAAGGAGGTGAAACTATAAAAAGTATGCAGGCAAGAACTGGAGCGCGTATTCAG : GTGATCCCTTTGCACTTGCCTCCTGGTGACACATCGCAGGAAAGAACAGTCCAAATTGACGGGTCAAGTGAACAGATTGAGGCTGCTAAGCAGCTGGTGTATGAAGTAATTAGCGAG : AATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</gDNA_template>
            <first_frame> I  L  F  T  T  T  S  L  T  R  V  S  K  T  L  P  P  L  L  S  F  Y  P  K  S  E  Q  I  E  S  N  N  G  R  R  S  T  V  R  C  T  R  C  R  *  Q  Q  E  E  V  R  *  S  S  G  T  V  S  W  S  S  *  T  Y  W  I  F  C  S  D  R  F  L  I  F  S  *  R  C  C  S  S  F  V  L  Q  Q  C  S  A  A  Y  G  *  F  P  V  G  *  A  E  G  S  G  D  R  C  *  V  V  E  *  C  *  S  E  E  T  *  S  *  *  *  R  R  W  C  R  W  I  *  F  L  *  T :   Q  A  H  C  Y  S  F  S  Y  K  F  I  W  L  S  G  A  E  Q  E  D  *  N  T  K  W  Q  S  W  C  D  Y  R  K  R  W  G  D  H  Q  V  S  S  T  P  V  W  S  Q  N  S  G  Y  *  R  H  G  C  *  S  *  F  S  K  Q  S  S  *  T  H  G  Y  S  R  P  N  C  *  G  *  T  V  D  *  *  G  S  F  *   : G  R  F  W  W  F  W  S  S  F  P  K  I  T  W  T  A  I  W  R  G  T  V  F  L  E  S  P  *  Q  Q   : G  W  S  C  Y  W  K  R  R  *  N  Y  K  K  Y  A  G  K  N  W  S  A  Y  S   : G  D  P  F  A  L  A  S  W  *  H  I  A  G  K  N  S  P  N  *  R  V  K  *  T  D  *  G  C  *  A  A  G  V  *  S  N  *  R   : E  S  C  *  E  S  R  D  V  G  R  I  S  T  G  L  S  G  P  A  S  Y  K  L  G  P  S  W  C  T  Y  A  T  I  W  L  W  L  W  S  A  W  C  I  S  F  S  T  I  L  P  W  L  P  S  S  T  C  L  C  W  I  C  L  W  L  G  S  E  W  C  S  K  S  T  I  S  G  R  R  V  *  L  L  Q  P  T  G  S  T  T  T  A  A  S  C  W  R  F  S  C  F  N  *  *  *  C  L  W  L  Q  P  A  T  C  L  R  L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  G  S  S  G  S  K  T  S  Y  S  G  K  L  W  S  T  T  A  V  S  *  C  T  S  W  L  C  P  A  C  P  S  A  T  R  V  S  S  T  S  C  S  S  S  I  R  L  C  P  G  *  S  Q  R  P  A  T  S  L  F  C  I  W  C  S  T  S  S  A  R  L  W  C  P  V  L  W  R  S  A  *  L  W  T  A  A  T  S  L  Q  Q  R  L  W  C  L  L  P  A  T  S  I  C  F  *  S  S  S  N  C  A  V  C  S  T  *  W  W  G  C  Q  S  F  T  S  E  L  I  S  V  S  F  V  C  F  W  V  N  L  L  K  T  I  S  C  F  C  C  L  V  I  F  R  F  C  R  L  S  N  S  V  L  N  C  S  L  F  V  P  V  F  G  L  R  I  V  *  V  V  L  S  F  V  P  L  G  V  F  S  S  K  V  P  M  V  L  P  C   </first_frame>
            <second_frame>  F  S  L  Q  P  L  L  S  L  G  F  R  K  P  Y  R  R  C  S  P  F  T  P  N  L  S  K  S  K  A  T  M  A  E  E  A  Q  Y  G  A  P  D  A  G  N  N  K  R  K  Y  D  D  Q  A  A  P  S  P  G  P  R  R  P  T  G  F  S  A  P  I  A  S  L  S  S  P  D  G  A  A  P  P  S  S  Y  N  N  V  P  P  P  M  D  D  F  Q  L  A  K  Q  K  A  Q  E  I  A  A  R  L  L  N  S  A  E  A  K  K  P  R  V  D  N  N  G  G  G  A  G  G  Y  D  S  Y  E   : H  K  P  I  V  T  P  S  V  T  S  S  Y  G  Y  P  G  Q  S  K  K  I  E  I  P  N  G  R  V  G  V  I  I  G  K  G  G  E  T  I  K  Y  L  Q  L  Q  S  G  A  K  I  Q  V  T  R  D  M  D  A  D  P  N  S  Q  N  R  A  V  E  L  M  G  T  P  D  Q  I  A  K  A  E  Q  L  I  N  E  V  L  S  E  :  A  D  S  G  G  S  G  L  V  S  R  R  L  P  G  Q  Q  S  G  G  E  Q  F  S  L  K  V  P  N  N  K  :  V  G  L  V  I  G  K  G  G  E  T  I  K  S  M  Q  A  R  T  G  A  R  I  Q  :  V  I  P  L  H  L  P  P  G  D  T  S  Q  E  R  T  V  Q  I  D  G  S  S  E  Q  I  E  A  A  K  Q  L  V  Y  E  V  I  S  E  :  N  R  A  R  N  Q  G  M  S  G  G  Y  Q  Q  G  Y  Q  A  R  P  P  T  S  W  A  P  P  G  A  P  M  Q  Q  S  G  Y  G  Y  G  Q  P  G  A  Y  P  S  Q  P  S  Y  P  G  Y  P  P  Q  P  A  S  A  G  Y  A  S  G  W  D  Q  S  G  A  Q  N  Q  Q  S  Q  A  G  G  Y  D  Y  Y  N  Q  Q  A  P  Q  Q  Q  Q  Q  A  A  G  G  S  A  A  S  T  D  N  S  A  Y  G  Y  N  Q  Q  P  A  S  G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G  A  P  Q  A  Q  K  P  P  T  Q  A  S  Y  G  Q  P  Q  Q  S  P  S  A  Q  A  G  Y  A  Q  P  A  P  A  Q  P  G  Y  P  Q  P  A  A  Q  A  Q  S  G  Y  A  Q  A  D  P  N  A  Q  R  P  P  S  S  A  Y  G  A  P  P  A  Q  P  G  Y  G  A  Q  S  Y  G  A  P  P  S  Y  G  Q  Q  P  P  P  Y  N  S  A  Y  G  A  Y  S  Q  P  Q  A  Y  A  S  E  A  A  P  T  A  Q  S  V  P  P  S  G  G  V  A  K  A  S  P  P  S  *  Y  Q  S  L  S  Y  V  F  G  *  I  F  *  K  Q  F  L  A  F  V  A  *  L  S  L  G  F  V  D  Y  Q  T  V  F  *  T  V  V  C  L  S  P  Y  L  D  C  V  S  F  K  *  F  Y  L  S  F  R  W  V  C  S  R  V  K  Y  L  W  C  C  H  V  </second_frame>
            <third_frame>   S  L  Y  N  H  F  S  H  *  G  F  E  N  P  T  A  A  A  L  L  L  P  Q  I  *  A  N  R  K  Q  Q  W  Q  K  K  H  S  T  V  H  Q  M  P  V  T  T  R  G  S  T  M  I  K  R  H  R  L  L  V  L  V  D  L  L  D  F  L  L  R  S  L  P  Y  L  L  L  T  V  L  L  L  L  R  L  T  T  M  F  R  R  L  W  M  I  S  S  W  L  S  R  R  L  R  R  S  L  L  G  C  *  I  V  L  K  R  R  N  L  E  L  I  I  T  A  V  V  P  V  D  M  I  P  M  N  :  T  S  P  L  L  L  L  Q  L  Q  V  H  M  V  I  R  G  R  A  R  R  L  K  Y  Q  M  A  E  L  V  *  L  *  E  K  V  G  R  P  S  S  I  F  N  S  S  L  E  P  K  F  R  L  L  E  T  W  M  L  I  L  I  L  K  T  E  Q  L  N  S  W  V  L  Q  T  K  L  L  R  L  N  S  *  L  M  R  F  F  L  R :   P  I  L  V  V  L  V  *  F  P  E  D  Y  L  D  S  N  L  E  G  N  S  F  P  *  K  S  L  T  T  R :   L  V  L  L  L  E  K  E  V  K  L  *  K  V  C  R  Q  E  L  E  R  V  F  R :   *  S  L  C  T  C  L  L  V  T  H  R  R  K  E  Q  S  K  L  T  G  Q  V  N  R  L  R  L  L  S  S  W  C  M  K  *  L  A  R :   I  V  L  G  I  K  G  C  R  E  D  I  N  R  V  I  R  P  G  L  L  Q  A  G  P  L  L  V  H  L  C  N  N  L  V  M  A  M  V  S  L  V  H  I  L  L  N  H  L  T  L  A  T  L  L  N  L  P  L  L  D  M  P  L  A  G  I  R  V  V  L  K  I  N  N  L  R  Q  E  G  M  I  T  T  T  N  R  L  H  N  N  S  S  K  L  L  E  V  Q  L  L  Q  L  I  I  V  P  M  V  T  T  S  N  L  P  Q  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M  G  L  L  R  L  K  N  L  L  L  R  Q  A  M  V  N  H  S  S  L  L  V  H  K  L  V  M  P  S  L  P  Q  R  N  P  G  I  L  N  Q  L  L  K  L  N  Q  V  M  P  R  L  I  P  T  P  S  D  L  P  L  L  H  M  V  L  H  Q  L  S  Q  V  M  V  P  S  L  M  A  L  R  L  V  M  D  S  S  H  L  L  T  T  A  P  M  V  L  T  P  S  H  K  H  M  L  L  K  Q  L  Q  L  R  S  L  F  H  L  V  V  G  L  P  K  L  H  L  R  V  N  I  S  L  F  R  M  F  L  G  E  S  F  K  N  N  F  L  L  L  L  L  S  Y  L  *  V  L  *  I  I  K  Q  C  F  K  L  *  F  V  C  P  R  I  W  I  A  Y  R  L  S  S  F  I  F  R  S  V  G  C  V  L  E  *  S  T  Y  G  V  A  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109150" stop="109552"/>
                    <exon start="110384" stop="110652"/>
                    <exon start="110786" stop="110878"/>
                    <exon start="110966" stop="111037"/>
                    <exon start="111158" stop="111274"/>
                    <exon start="113712" stop="114812"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2052</number_coding_nucleotides>
                  <number_encoded_amino_acids>684</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLQPLLSLGFRKPYRRCSPFTPNLSKSKATMAEEAQYGAPDAGNNKRKYDDQAAPSPGPRRPTGFSAPIASLSSPDGAAPPSSYNNVPPPMDDFQLAKQKAQEIAARLLNSAEAKKPRVDNNGGGAGGYDSYEHKPIVTPSVTSSYGYPGQSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSQNRAVELMGTPDQIAKAEQLINEVLSEADSGGSGLVSRRLPGQQSGGEQFSLKVPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSQERTVQIDGSSEQIEAAKQLVYEVISENRARNQGMSGGYQQGYQARPPTSWAPPGAPMQQSGYGYGQPGAYPSQPSYPGYPPQPASAGYASGWDQSGAQNQQSQAGGYDYYNQQAPQQQQQAAGGSAASTDNSAYGYNQQPASGYSQGQAYAQDGYGGYHVPAPHSGGYQGSGYEQQQGYSSTAGYGNASNPTSDGQNSSYGAQTDGSQAPPPASATAQQGYHSGQQPSPNPSYPSQGSAQAGYGVPPTSQGGYGTQPAGGYAASYGAPQAQKPPTQASYGQPQQSPSAQAGYAQPAPAQPGYPQPAAQAQSGYAQADPNAQRPPSSAYGAPPAQPGYGAQSYGAPPSYGQQPPPYNSAYGAYSQPQAYASEAAPTAQSVPPSGGVAKASPPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112550" e_stop="115026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112550" e_stop="115026" e_length="2477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112550" stop="113232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112667" stop="113060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112704" stop="113421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112904" stop="113476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113292" stop="114097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113293" stop="114044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113685" stop="114519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113713" stop="114617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113716" stop="114608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113823" stop="114337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113871" stop="114750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113875" stop="114522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113875" stop="114434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113875" stop="114165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113912" stop="114609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113921" stop="114697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113932" stop="114263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113944" stop="114745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113955" stop="114742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113955" stop="114706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113961" stop="114429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113980" stop="114750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113987" stop="114509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113990" stop="114340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114109" stop="114728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114269" stop="114969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114536" stop="114939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114548" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114548" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114549" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114610" stop="114939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114621" stop="114936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114685" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114708" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114751" stop="115026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAAATGAGGGACTGATTTTGCTAGGATTTGCAATGGAGGAAACTAAGATTTGTTGAGATTTATCATTGTTATCTTTTAGGTGTCAATCTTGAGATATTATATGAATGTACTACATAAGTGTTGTAACAAAGAGTGTTTGGTGTAATTATCTATTGTTGATGTCATTACTCAGCCAGGGGGCAACTTTTTTGTGCCTTGGGATTTTCTAGTGCTTTATTTGGTTTCTCTCAAGAAAAATCCATTACTTTCATTACTAAGCCACTAGTATCTGATTTTCCCTTTCTCCATAGACCTTTTAGTCATGGCTATGAAGATCGAACTTCCTTTGAGGTTTGGAGTGCTTTAAGGATCATTAGTATGTCAGTTCTGTGTGTTCACGTCTTGATTCTTAGCAGTACTGTTAGGTTCGCATTTCTTATTATCAAAAAATGGAATCATTGCCCTTCAAGTGTGATGTGGCATGTAGGAATCTGCTTTCTGGCGGTGTTAATAATGACATCTATTATCACTCTGTGGTTTTCCTTGTTTTTGGTGTCCCTGTGGTCCAACTCTTCCGAACCCAATTCACGGAGTGATAGCTGGTCTTCGAACCTCAAGGTGCACTGCTCTTGCTGCTTTGCGAACACATCATATTTATTCTTAATATTGAAGTTTGTCGTTTCTCTAATTCGCATGTCATTGAAACAGTTATACAACTTCTCTGGGTATATAAATTTGAATACACCATATCATTATTATATAAAATTCTCTGCTTATGACATATAATGAACAGATTACTACATCATATTATTATTGGTAAAGTCCCTTGGCTTATAGTGGTTCCTTGGTCATCTTATAGTGGTATCTTGCTATCTTAAGAGTTATCTTGCCTACATATAGAATGTTTTTGTTTTTTGCTTTTTTGCTTTTGTATCCTTCACTTCAAATAGGGTGAGGATGAGCATCTGCCAGGAGTTTTGTACCTCCCAACCAGTAAGTCTTACATCTGTCTTGATGCATACCTAATATTAATTGTTATATGTTTGTGGTATAAGTTACTGTTTCATCTGCTATGATTATGCTACCTGGGTGTGGCTTAGTCTGCCCTTGCAATGTGAGTTATTTAAATATGCTTGAATCAATCATATTCTTGGTTAGTTTAGACGACAATTCTTGTGCAGAATCGTGCTAGGAATCAAGGGATGTCGGGAGGATATCAACAGGGTTATCAGGCCCGGCCTCCTACAAGCTGGGCCCCTCCTGGTGCACCTATGCAACAATCTGGTTATGGCTATGGTCAGCCTGGTGCATATCCTTCTCAACCATCTTACCCTGGCTACCCTCCTCAACCTGCCTCTGCTGGATATGCCTCTGGCTGGGATCAGAGTGGTGCTCAAAATCAACAATCTCAGGCAGGAGGGTATGATTACTACAACCAACAGGCTCCACAACAACAGCAGCAAGCTGCTGGAGGTTCAGCTGCTTCAACTGATAATAGTGCCTATGGTTACAACCAGCAACCTGCCTCAGGTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</gDNA_template>
            <first_frame> S  K  *  G  T  D  F  A  R  I  C  N  G  G  N  *  D  L  L  R  F  I  I  V  I  F  *  V  S  I  L  R  Y  Y  M  N  V  L  H  K  C  C  N  K  E  C  L  V  *  L  S  I  V  D  V  I  T  Q  P  G  G  N  F  F  V  P  W  D  F  L  V  L  Y  L  V  S  L  K  K  N  P  L  L  S  L  L  S  H  *  Y  L  I  F  P  F  S  I  D  L  L  V  M  A  M  K  I  E  L  P  L  R  F  G  V  L  *  G  S  L  V  C  Q  F  C  V  F  T  S  *  F  L  A  V  L  L  G  S  H  F  L  L  S  K  N  G  I  I  A  L  Q  V  *  C  G  M  *  E  S  A  F  W  R  C  *  *  *  H  L  L  S  L  C  G  F  P  C  F  W  C  P  C  G  P  T  L  P  N  P  I  H  G  V  I  A  G  L  R  T  S  R  C  T  A  L  A  A  L  R  T  H  H  I  Y  S  *  Y  *  S  L  S  F  L  *  F  A  C  H  *  N  S  Y  T  T  S  L  G  I  *  I  *  I  H  H  I  I  I  I  *  N  S  L  L  M  T  Y  N  E  Q  I  T  T  S  Y  Y  Y  W  *  S  P  L  A  Y  S  G  S  L  V  I  L  *  W  Y  L  A  I  L  R  V  I  L  P  T  Y  R  M  F  L  F  F  A  F  L  L  L  Y  P  S  L  Q  I  G  *  G  *  A  S  A  R  S  F  V  P  P  N  Q  *  V  L  H  L  S  *  C  I  P  N  I  N  C  Y  M  F  V  V  *  V  T  V  S  S  A  M  I  M  L  P  G  C  G  L  V  C  P  C  N  V  S  Y  L  N  M  L  E  S  I  I  F  L  V  S  L  D  D  N  S  C  A  E  S  C  *  E  S  R  D  V  G  R  I  S  T  G  L  S  G  P  A  S  Y  K  L  G  P  S  W  C  T  Y  A  T  I  W  L  W  L  W  S  A  W  C  I  S  F  S  T  I  L  P  W  L  P  S  S  T  C  L  C  W  I  C  L  W  L  G  S  E  W  C  S  K  S  T  I  S  G  R  R  V  *  L  L  Q  P  T  G  S  T  T  T  A  A  S  C  W  R  F  S  C  F  N  *  *  *  C  L  W  L  Q  P  A  T  C  L  R  L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  G  S  S  G  S  K  T  S  Y  S  G  K  L  W  S  T  T  A  V  S  *  C  T  S  W  L  C  P  A  C  P  S  A  T  R  V  S  S  T  S  C  S  S  S  I  R  L  C  P  G  *  S  Q  R  P  A  T  S  L  F  C  I  W  C  S  T  S  S  A  R  L  W  C  P  V  L  W  R  S  A  *  L  W  T  A  A  T  S  L  Q  Q  R  L  W  C  L  L  P  A  T  S  I  C  F  *  S  S  S  N  C  A  V  C  S  T  *  W  W  G  C  Q  S  F  T  S  E  L  I  S  V  S  F  V  C  F  W  V  N  L  L  K  T  I  S  C  F  C  C  L  V  I  F  R  F  C  R  L  S  N  S  V  L  N  C  S  L  F  V  P  V  F  G  L  R  I  V  *  V  V  L  S  F  V  P  L  G  V  F  S  S  K  V  P  M  V  L  P  C   </first_frame>
            <second_frame>  V  N  E  G  L  I  L  L  G  F  A  M  E  E  T  K  I  C  *  D  L  S  L  L  S  F  R  C  Q  S  *  D  I  I  *  M  Y  Y  I  S  V  V  T  K  S  V  W  C  N  Y  L  L  L  M  S  L  L  S  Q  G  A  T  F  L  C  L  G  I  F  *  C  F  I  W  F  L  S  R  K  I  H  Y  F  H  Y  *  A  T  S  I  *  F  S  L  S  P  *  T  F  *  S  W  L  *  R  S  N  F  L  *  G  L  E  C  F  K  D  H  *  Y  V  S  S  V  C  S  R  L  D  S  *  Q  Y  C  *  V  R  I  S  Y  Y  Q  K  M  E  S  L  P  F  K  C  D  V  A  C  R  N  L  L  S  G  G  V  N  N  D  I  Y  Y  H  S  V  V  F  L  V  F  G  V  P  V  V  Q  L  F  R  T  Q  F  T  E  *  *  L  V  F  E  P  Q  G  A  L  L  L  L  L  C  E  H  I  I  F  I  L  N  I  E  V  C  R  F  S  N  S  H  V  I  E  T  V  I  Q  L  L  W  V  Y  K  F  E  Y  T  I  S  L  L  Y  K  I  L  C  L  *  H  I  M  N  R  L  L  H  H  I  I  I  G  K  V  P  W  L  I  V  V  P  W  S  S  Y  S  G  I  L  L  S  *  E  L  S  C  L  H  I  E  C  F  C  F  L  L  F  C  F  C  I  L  H  F  K  *  G  E  D  E  H  L  P  G  V  L  Y  L  P  T  S  K  S  Y  I  C  L  D  A  Y  L  I  L  I  V  I  C  L  W  Y  K  L  L  F  H  L  L  *  L  C  Y  L  G  V  A  *  S  A  L  A  M  *  V  I  *  I  C  L  N  Q  S  Y  S  W  L  V  *  T  T  I  L  V  Q  N  R  A  R  N  Q  G  M  S  G  G  Y  Q  Q  G  Y  Q  A  R  P  P  T  S  W  A  P  P  G  A  P  M  Q  Q  S  G  Y  G  Y  G  Q  P  G  A  Y  P  S  Q  P  S  Y  P  G  Y  P  P  Q  P  A  S  A  G  Y  A  S  G  W  D  Q  S  G  A  Q  N  Q  Q  S  Q  A  G  G  Y  D  Y  Y  N  Q  Q  A  P  Q  Q  Q  Q  Q  A  A  G  G  S  A  A  S  T  D  N  S  A  Y  G  Y  N  Q  Q  P  A  S  G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G  A  P  Q  A  Q  K  P  P  T  Q  A  S  Y  G  Q  P  Q  Q  S  P  S  A  Q  A  G  Y  A  Q  P  A  P  A  Q  P  G  Y  P  Q  P  A  A  Q  A  Q  S  G  Y  A  Q  A  D  P  N  A  Q  R  P  P  S  S  A  Y  G  A  P  P  A  Q  P  G  Y  G  A  Q  S  Y  G  A  P  P  S  Y  G  Q  Q  P  P  P  Y  N  S  A  Y  G  A  Y  S  Q  P  Q  A  Y  A  S  E  A  A  P  T  A  Q  S  V  P  P  S  G  G  V  A  K  A  S  P  P  S  *  Y  Q  S  L  S  Y  V  F  G  *  I  F  *  K  Q  F  L  A  F  V  A  *  L  S  L  G  F  V  D  Y  Q  T  V  F  *  T  V  V  C  L  S  P  Y  L  D  C  V  S  F  K  *  F  Y  L  S  F  R  W  V  C  S  R  V  K  Y  L  W  C  C  H  V  </second_frame>
            <third_frame>   *  M  R  D  *  F  C  *  D  L  Q  W  R  K  L  R  F  V  E  I  Y  H  C  Y  L  L  G  V  N  L  E  I  L  Y  E  C  T  T  *  V  L  *  Q  R  V  F  G  V  I  I  Y  C  *  C  H  Y  S  A  R  G  Q  L  F  C  A  L  G  F  S  S  A  L  F  G  F  S  Q  E  K  S  I  T  F  I  T  K  P  L  V  S  D  F  P  F  L  H  R  P  F  S  H  G  Y  E  D  R  T  S  F  E  V  W  S  A  L  R  I  I  S  M  S  V  L  C  V  H  V  L  I  L  S  S  T  V  R  F  A  F  L  I  I  K  K  W  N  H  C  P  S  S  V  M  W  H  V  G  I  C  F  L  A  V  L  I  M  T  S  I  I  T  L  W  F  S  L  F  L  V  S  L  W  S  N  S  S  E  P  N  S  R  S  D  S  W  S  S  N  L  K  V  H  C  S  C  C  F  A  N  T  S  Y  L  F  L  I  L  K  F  V  V  S  L  I  R  M  S  L  K  Q  L  Y  N  F  S  G  Y  I  N  L  N  T  P  Y  H  Y  Y  I  K  F  S  A  Y  D  I  *  *  T  D  Y  Y  I  I  L  L  L  V  K  S  L  G  L  *  W  F  L  G  H  L  I  V  V  S  C  Y  L  K  S  Y  L  A  Y  I  *  N  V  F  V  F  C  F  F  A  F  V  S  F  T  S  N  R  V  R  M  S  I  C  Q  E  F  C  T  S  Q  P  V  S  L  T  S  V  L  M  H  T  *  Y  *  L  L  Y  V  C  G  I  S  Y  C  F  I  C  Y  D  Y  A  T  W  V  W  L  S  L  P  L  Q  C  E  L  F  K  Y  A  *  I  N  H  I  L  G  *  F  R  R  Q  F  L  C  R  I  V  L  G  I  K  G  C  R  E  D  I  N  R  V  I  R  P  G  L  L  Q  A  G  P  L  L  V  H  L  C  N  N  L  V  M  A  M  V  S  L  V  H  I  L  L  N  H  L  T  L  A  T  L  L  N  L  P  L  L  D  M  P  L  A  G  I  R  V  V  L  K  I  N  N  L  R  Q  E  G  M  I  T  T  T  N  R  L  H  N  N  S  S  K  L  L  E  V  Q  L  L  Q  L  I  I  V  P  M  V  T  T  S  N  L  P  Q  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M  G  L  L  R  L  K  N  L  L  L  R  Q  A  M  V  N  H  S  S  L  L  V  H  K  L  V  M  P  S  L  P  Q  R  N  P  G  I  L  N  Q  L  L  K  L  N  Q  V  M  P  R  L  I  P  T  P  S  D  L  P  L  L  H  M  V  L  H  Q  L  S  Q  V  M  V  P  S  L  M  A  L  R  L  V  M  D  S  S  H  L  L  T  T  A  P  M  V  L  T  P  S  H  K  H  M  L  L  K  Q  L  Q  L  R  S  L  F  H  L  V  V  G  L  P  K  L  H  L  R  V  N  I  S  L  F  R  M  F  L  G  E  S  F  K  N  N  F  L  L  L  L  L  S  Y  L  *  V  L  *  I  I  K  Q  C  F  K  L  *  F  V  C  P  R  I  W  I  A  Y  R  L  S  S  F  I  F  R  S  V  G  C  V  L  E  *  S  T  Y  G  V  A  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113689" stop="114888"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1197</number_coding_nucleotides>
                  <number_encoded_amino_acids>399</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRRQFLCRIVLGIKGCREDINRVIRPGLLQAGPLLVHLCNNLVMAMVSLVHILLNHLTLATLLNLPLLDMPLAGIRVVLKINNLRQEGMITTTNRLHNNSSKLLEVQLLQLIIVPMVTTSNLPQVTVKDKLMPRMAMVDIMYLPLILVGIRVLVMSSNKAIALLLAMGMPQTQHQTARTRRMVPKLMAVKHLHQHQPQLNKDIILASSPALILATHLKALLRLDMGCPQLLKVGMVHSQLEAMLLVMGLLRLKNLLLRQAMVNHSSLLVHKLVMPSLPQRNPGILNQLLKLNQVMPRLIPTPSDLPLLHMVLHQLSQVMVPSLMALRLVMDSSHLLTTAPMVLTPSHKHMLLKQLQLRSLFHLVVGLPKLHLRVNISLFRMFLGESFKNNFLLLLLSYL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113694" stop="114812"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTILVQNRARNQGMSGGYQQGYQARPPTSWAPPGAPMQQSGYGYGQPGAYPSQPSYPGYPPQPASAGYASGWDQSGAQNQQSQAGGYDYYNQQAPQQQQQAAGGSAASTDNSAYGYNQQPASGYSQGQAYAQDGYGGYHVPAPHSGGYQGSGYEQQQGYSSTAGYGNASNPTSDGQNSSYGAQTDGSQAPPPASATAQQGYHSGQQPSPNPSYPSQGSAQAGYGVPPTSQGGYGTQPAGGYAASYGAPQAQKPPTQASYGQPQQSPSAQAGYAQPAPAQPGYPQPAAQAQSGYAQADPNAQRPPSSAYGAPPAQPGYGAQSYGAPPSYGQQPPPYNSAYGAYSQPQAYASEAAPTAQSVPPSGGVAKASPPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112711" stop="113316"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHYSARGQLFCALGFSSALFGFSQEKSITFITKPLVSDFPFLHRPFSHGYEDRTSFEVWSALRIISMSVLCVHVLILSSTVRFAFLIIKKWNHCPSSVMWHVGICFLAVLIMTSIITLWFSLFLVSLWSNSSEPNSRSDSWSSNLKVHCSCCFANTSYLFLILKFVVSLIRMSLKQLYNFSGYINLNTPYHYYIKFSAYDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109175" e_stop="109552"/>
            <exon e_start="110384" e_stop="110640"/>
            <exon e_start="114061" e_stop="115026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.235" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109175" e_stop="109552" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="109553" i_stop="110383" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="110384" e_stop="110640" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.235" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110641" i_stop="114060" i_length="3420"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="114061" e_stop="115026" e_length="966"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109175" stop="109552"/>
              <exon start="110384" stop="110636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109184" stop="109552"/>
              <exon start="110384" stop="110599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109185" stop="109552"/>
              <exon start="110384" stop="110488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109186" stop="109552"/>
              <exon start="110384" stop="110461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110437" stop="110640"/>
              <exon start="114061" stop="114378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114109" stop="114728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114269" stop="114969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114536" stop="114939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114548" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114548" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114549" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114610" stop="114939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114621" stop="114936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114685" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114708" stop="114981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114751" stop="115026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGTTTCGAAAACCCTACCGCCGCTGCTCTCCTTTTACCCCAAATCTGAGCAAATCGAAAGCAACAATGGCAGAAGAAGCACAGTACGGTGCACCAGATGCCGGTAACAACAAGAGGAAGTACGATGATCAAGCGGCACCGTCTCCTGGTCCTCGTAGACCTACTGGATTTTCTGCTCCGATCGCTTCCTTATCTTCTCCTGACGGTGCTGCTCCTCCTTCGTCTTACAACAATGTTCCGCCGCCTATGGATGATTTCCAGTTGGCTAAGCAGAAGGCTCAGGAGATCGCTGCTAGGTTGTTGAATAGTGCTGAAGCGAAGAAACCTAGAGTTGATAATAACGGCGGTGGTGCCGGTGGATATGATTCCTATGAAC : ACAAGCCCATTGTTACTCCTTCAGTTACAAGTTCATATGGTTATCCGGGGCAGAGCAAGAAGATTGAAATACCAAATGGCAGAGTTGGTGTGATTATAGGAAAAGGTGGGGAGACCATCAAGTATCTTCAACTCCAGTCTGGAGCCAAAATTCAGGTTACTAGAGACATGGATGCTGATCCTAATTCTCAAAACAGAGCAGTTGAACTCATGGGTACTCCAGACCAAATTGCTAAGGCTGAACAGTTGATTAATGAG : GTTACAGTCAAGGACAAGCTTATGCCCAGGATGGCTATGGTGGATATCATGTACCTGCCCCTCATTCTGGTGGGTATCAGGGTTCTGGTTATGAGCAGCAACAAGGCTATAGCTCTACTGCTGGCTATGGGAATGCCTCAAACCCAACATCAGACGGCCAGAACTCGTCGTATGGTGCCCAAACTGATGGCAGTCAAGCACCTCCACCAGCATCAGCCACAGCTCAACAAGGATATCATTCTGGCCAGCAGCCCAGCCCTAATCCTAGCTACCCATCTCAAGGCTCTGCTCAGGCTGGATATGGGGTGCCCCCAACTTCTCAAGGTGGGTATGGTACACAGCCAGCTGGAGGCTATGCTGCTAGTTATGGGGCTCCTCAGGCTCAAAAACCTCCTACTCAGGCAAGCTATGGTCAACCACAGCAGTCTCCTAGTGCACAAGCTGGTTATGCCCAGCCTGCCCCAGCGCAACCCGGGTATCCTCAACCAGCTGCTCAAGCTCAATCAGGTTATGCCCAGGCTGATCCCAACGCCCAGCGACCTCCCTCTTCTGCATATGGTGCTCCACCAGCTCAGCCAGGTTATGGTGCCCAGTCTTATGGCGCTCCGCCTAGTTATGGACAGCAGCCACCTCCTTACAACAGCGCCTATGGTGCTTACTCCCAGCCACAAGCATATGCTTCTGAAGCAGCTCCAACTGCGCAGTCTGTTCCACCTAGTGGTGGGGTTGCCAAAGCTTCACCTCCGAGTTAATATCAGTCTCTTTCGTATGTTTTTGGGTGAATCTTTTAAAAACAATTTCTTGCTTTTGTTGCTTAGTTATCTTTAGGTTTTGTAGATTATCAAACAGTGTTTTAAACTGTAGTTTGTTTGTCCCCGTATTTGGATTGCGTATCGTTTAAGTAGTTTTATCTTTCGTTCCGTTGGGTGTGTTCTCGAGTAAAGTACCTATGGTGTTGCCATGTTT</gDNA_template>
            <first_frame> *  G  F  E  N  P  T  A  A  A  L  L  L  P  Q  I  *  A  N  R  K  Q  Q  W  Q  K  K  H  S  T  V  H  Q  M  P  V  T  T  R  G  S  T  M  I  K  R  H  R  L  L  V  L  V  D  L  L  D  F  L  L  R  S  L  P  Y  L  L  L  T  V  L  L  L  L  R  L  T  T  M  F  R  R  L  W  M  I  S  S  W  L  S  R  R  L  R  R  S  L  L  G  C  *  I  V  L  K  R  R  N  L  E  L  I  I  T  A  V  V  P  V  D  M  I  P  M  N  :  T  S  P  L  L  L  L  Q  L  Q  V  H  M  V  I  R  G  R  A  R  R  L  K  Y  Q  M  A  E  L  V  *  L  *  E  K  V  G  R  P  S  S  I  F  N  S  S  L  E  P  K  F  R  L  L  E  T  W  M  L  I  L  I  L  K  T  E  Q  L  N  S  W  V  L  Q  T  K  L  L  R  L  N  S  *  L  M  R :   L  Q  S  R  T  S  L  C  P  G  W  L  W  W  I  S  C  T  C  P  S  F  W  W  V  S  G  F  W  L  *  A  A  T  R  L  *  L  Y  C  W  L  W  E  C  L  K  P  N  I  R  R  P  E  L  V  V  W  C  P  N  *  W  Q  S  S  T  S  T  S  I  S  H  S  S  T  R  I  S  F  W  P  A  A  Q  P  *  S  *  L  P  I  S  R  L  C  S  G  W  I  W  G  A  P  N  F  S  R  W  V  W  Y  T  A  S  W  R  L  C  C  *  L  W  G  S  S  G  S  K  T  S  Y  S  G  K  L  W  S  T  T  A  V  S  *  C  T  S  W  L  C  P  A  C  P  S  A  T  R  V  S  S  T  S  C  S  S  S  I  R  L  C  P  G  *  S  Q  R  P  A  T  S  L  F  C  I  W  C  S  T  S  S  A  R  L  W  C  P  V  L  W  R  S  A  *  L  W  T  A  A  T  S  L  Q  Q  R  L  W  C  L  L  P  A  T  S  I  C  F  *  S  S  S  N  C  A  V  C  S  T  *  W  W  G  C  Q  S  F  T  S  E  L  I  S  V  S  F  V  C  F  W  V  N  L  L  K  T  I  S  C  F  C  C  L  V  I  F  R  F  C  R  L  S  N  S  V  L  N  C  S  L  F  V  P  V  F  G  L  R  I  V  *  V  V  L  S  F  V  P  L  G  V  F  S  S  K  V  P  M  V  L  P  C   </first_frame>
            <second_frame>  R  V  S  K  T  L  P  P  L  L  S  F  Y  P  K  S  E  Q  I  E  S  N  N  G  R  R  S  T  V  R  C  T  R  C  R  *  Q  Q  E  E  V  R  *  S  S  G  T  V  S  W  S  S  *  T  Y  W  I  F  C  S  D  R  F  L  I  F  S  *  R  C  C  S  S  F  V  L  Q  Q  C  S  A  A  Y  G  *  F  P  V  G  *  A  E  G  S  G  D  R  C  *  V  V  E  *  C  *  S  E  E  T  *  S  *  *  *  R  R  W  C  R  W  I  *  F  L  *  T :   Q  A  H  C  Y  S  F  S  Y  K  F  I  W  L  S  G  A  E  Q  E  D  *  N  T  K  W  Q  S  W  C  D  Y  R  K  R  W  G  D  H  Q  V  S  S  T  P  V  W  S  Q  N  S  G  Y  *  R  H  G  C  *  S  *  F  S  K  Q  S  S  *  T  H  G  Y  S  R  P  N  C  *  G  *  T  V  D  *  *   : G  Y  S  Q  G  Q  A  Y  A  Q  D  G  Y  G  G  Y  H  V  P  A  P  H  S  G  G  Y  Q  G  S  G  Y  E  Q  Q  Q  G  Y  S  S  T  A  G  Y  G  N  A  S  N  P  T  S  D  G  Q  N  S  S  Y  G  A  Q  T  D  G  S  Q  A  P  P  P  A  S  A  T  A  Q  Q  G  Y  H  S  G  Q  Q  P  S  P  N  P  S  Y  P  S  Q  G  S  A  Q  A  G  Y  G  V  P  P  T  S  Q  G  G  Y  G  T  Q  P  A  G  G  Y  A  A  S  Y  G  A  P  Q  A  Q  K  P  P  T  Q  A  S  Y  G  Q  P  Q  Q  S  P  S  A  Q  A  G  Y  A  Q  P  A  P  A  Q  P  G  Y  P  Q  P  A  A  Q  A  Q  S  G  Y  A  Q  A  D  P  N  A  Q  R  P  P  S  S  A  Y  G  A  P  P  A  Q  P  G  Y  G  A  Q  S  Y  G  A  P  P  S  Y  G  Q  Q  P  P  P  Y  N  S  A  Y  G  A  Y  S  Q  P  Q  A  Y  A  S  E  A  A  P  T  A  Q  S  V  P  P  S  G  G  V  A  K  A  S  P  P  S  *  Y  Q  S  L  S  Y  V  F  G  *  I  F  *  K  Q  F  L  A  F  V  A  *  L  S  L  G  F  V  D  Y  Q  T  V  F  *  T  V  V  C  L  S  P  Y  L  D  C  V  S  F  K  *  F  Y  L  S  F  R  W  V  C  S  R  V  K  Y  L  W  C  C  H  V  </second_frame>
            <third_frame>   G  F  R  K  P  Y  R  R  C  S  P  F  T  P  N  L  S  K  S  K  A  T  M  A  E  E  A  Q  Y  G  A  P  D  A  G  N  N  K  R  K  Y  D  D  Q  A  A  P  S  P  G  P  R  R  P  T  G  F  S  A  P  I  A  S  L  S  S  P  D  G  A  A  P  P  S  S  Y  N  N  V  P  P  P  M  D  D  F  Q  L  A  K  Q  K  A  Q  E  I  A  A  R  L  L  N  S  A  E  A  K  K  P  R  V  D  N  N  G  G  G  A  G  G  Y  D  S  Y  E   : H  K  P  I  V  T  P  S  V  T  S  S  Y  G  Y  P  G  Q  S  K  K  I  E  I  P  N  G  R  V  G  V  I  I  G  K  G  G  E  T  I  K  Y  L  Q  L  Q  S  G  A  K  I  Q  V  T  R  D  M  D  A  D  P  N  S  Q  N  R  A  V  E  L  M  G  T  P  D  Q  I  A  K  A  E  Q  L  I  N  E  :  V  T  V  K  D  K  L  M  P  R  M  A  M  V  D  I  M  Y  L  P  L  I  L  V  G  I  R  V  L  V  M  S  S  N  K  A  I  A  L  L  L  A  M  G  M  P  Q  T  Q  H  Q  T  A  R  T  R  R  M  V  P  K  L  M  A  V  K  H  L  H  Q  H  Q  P  Q  L  N  K  D  I  I  L  A  S  S  P  A  L  I  L  A  T  H  L  K  A  L  L  R  L  D  M  G  C  P  Q  L  L  K  V  G  M  V  H  S  Q  L  E  A  M  L  L  V  M  G  L  L  R  L  K  N  L  L  L  R  Q  A  M  V  N  H  S  S  L  L  V  H  K  L  V  M  P  S  L  P  Q  R  N  P  G  I  L  N  Q  L  L  K  L  N  Q  V  M  P  R  L  I  P  T  P  S  D  L  P  L  L  H  M  V  L  H  Q  L  S  Q  V  M  V  P  S  L  M  A  L  R  L  V  M  D  S  S  H  L  L  T  T  A  P  M  V  L  T  P  S  H  K  H  M  L  L  K  Q  L  Q  L  R  S  L  F  H  L  V  V  G  L  P  K  L  H  L  R  V  N  I  S  L  F  R  M  F  L  G  E  S  F  K  N  N  F  L  L  L  L  L  S  Y  L  *  V  L  *  I  I  K  Q  C  F  K  L  *  F  V  C  P  R  I  W  I  A  Y  R  L  S  S  F  I  F  R  S  V  G  C  V  L  E  *  S  T  Y  G  V  A  M  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109177" stop="109552"/>
                    <exon start="110384" stop="110640"/>
                    <exon start="114061" stop="114888"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1458</number_coding_nucleotides>
                  <number_encoded_amino_acids>486</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRKPYRRCSPFTPNLSKSKATMAEEAQYGAPDAGNNKRKYDDQAAPSPGPRRPTGFSAPIASLSSPDGAAPPSSYNNVPPPMDDFQLAKQKAQEIAARLLNSAEAKKPRVDNNGGGAGGYDSYEHKPIVTPSVTSSYGYPGQSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSQNRAVELMGTPDQIAKAEQLINEVTVKDKLMPRMAMVDIMYLPLILVGIRVLVMSSNKAIALLLAMGMPQTQHQTARTRRMVPKLMAVKHLHQHQPQLNKDIILASSPALILATHLKALLRLDMGCPQLLKVGMVHSQLEAMLLVMGLLRLKNLLLRQAMVNHSSLLVHKLVMPSLPQRNPGILNQLLKLNQVMPRLIPTPSDLPLLHMVLHQLSQVMVPSLMALRLVMDSSHLLTTAPMVLTPSHKHMLLKQLQLRSLFHLVVGLPKLHLRVNISLFRMFLGESFKNNFLLLLLSYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="111570" e_stop="112423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="111570" e_stop="112423" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111570" stop="112423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738196" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAATTTTTTCAGCAGTGGTGAAATTTGCTGACACATTAAGTTACAGTTTACTTTGTTGCTAGAGCATCATGAATGAGAAATTAATAATCCAATATATGACTTCATTAGGATCTTCATGATCTGTATCTGCAAGTTTCATGTATGTGTGTTGCTGTCAATTACCTATATCCGTCCTTGCATCGCTAGAATTCATAGTGTTTGCAGATCATTTTGCCAGTCCTCTTCTTGGTCGACAGCGTCAGTTAATGGGAATTCTAGTTCATGTCAGTGACCCCTGGATGAAGGAGATTGGCTCTTGCTGTGCTTCATTTTTTGGAAGGAAGTATTCTTATTAATATTGGAGATATGCTTTCTAGTTGCAAAGTAGGTCTTTGCGAGTATTTTGCTCCACTCTTAACTATAGCTCCATTACTTTAAATAGAAGGATTAATAGATTGTTATCCACATAATATATCTGTAATGTGACATGACACCTACATATGTCAACCTTTTTTCCCATCAGTTCTTTTTAATTAGTTGGATGTTGCTGGAGCAAGAGATCAGTTTCTAACCCAAGGCATTATCAGGTTTAAGATGACTTATCAAAATGTTTAGTTGCCTCAATGTCTATTGATCTATATTTCATTGGACTTTAGATGTTGTGATTTTTGTGAGGCGCAGGTTTTGGGGAGGTTCTCCTTGAAGGTAACTAAGTCTGTCTAAAAATTTTCCGTAATATTGAGGATATATTATAATCTGAGATGTGCAATAACTCTTGGTTTAATGGTTTGGGTACTTGGTTAATATCAAGAGACAACATATAACTATTCTGGTTAATTTTGTATCTGATCACTGATATTATTATTGGAAAAT</gDNA_template>
            <first_frame> I  N  F  F  S  S  G  E  I  C  *  H  I  K  L  Q  F  T  L  L  L  E  H  H  E  *  E  I  N  N  P  I  Y  D  F  I  R  I  F  M  I  C  I  C  K  F  H  V  C  V  L  L  S  I  T  Y  I  R  P  C  I  A  R  I  H  S  V  C  R  S  F  C  Q  S  S  S  W  S  T  A  S  V  N  G  N  S  S  S  C  Q  *  P  L  D  E  G  D  W  L  L  L  C  F  I  F  W  K  E  V  F  L  L  I  L  E  I  C  F  L  V  A  K  *  V  F  A  S  I  L  L  H  S  *  L  *  L  H  Y  F  K  *  K  D  *  *  I  V  I  H  I  I  Y  L  *  C  D  M  T  P  T  Y  V  N  L  F  S  H  Q  F  F  L  I  S  W  M  L  L  E  Q  E  I  S  F  *  P  K  A  L  S  G  L  R  *  L  I  K  M  F  S  C  L  N  V  Y  *  S  I  F  H  W  T  L  D  V  V  I  F  V  R  R  R  F  W  G  G  S  P  *  R  *  L  S  L  S  K  N  F  P  *  Y  *  G  Y  I  I  I  *  D  V  Q  *  L  L  V  *  W  F  G  Y  L  V  N  I  K  R  Q  H  I  T  I  L  V  N  F  V  S  D  H  *  Y  Y  Y  W  K   </first_frame>
            <second_frame>  L  I  F  S  A  V  V  K  F  A  D  T  L  S  Y  S  L  L  C  C  *  S  I  M  N  E  K  L  I  I  Q  Y  M  T  S  L  G  S  S  *  S  V  S  A  S  F  M  Y  V  C  C  C  Q  L  P  I  S  V  L  A  S  L  E  F  I  V  F  A  D  H  F  A  S  P  L  L  G  R  Q  R  Q  L  M  G  I  L  V  H  V  S  D  P  W  M  K  E  I  G  S  C  C  A  S  F  F  G  R  K  Y  S  Y  *  Y  W  R  Y  A  F  *  L  Q  S  R  S  L  R  V  F  C  S  T  L  N  Y  S  S  I  T  L  N  R  R  I  N  R  L  L  S  T  *  Y  I  C  N  V  T  *  H  L  H  M  S  T  F  F  P  I  S  S  F  *  L  V  G  C  C  W  S  K  R  S  V  S  N  P  R  H  Y  Q  V  *  D  D  L  S  K  C  L  V  A  S  M  S  I  D  L  Y  F  I  G  L  *  M  L  *  F  L  *  G  A  G  F  G  E  V  L  L  E  G  N  *  V  C  L  K  I  F  R  N  I  E  D  I  L  *  S  E  M  C  N  N  S  W  F  N  G  L  G  T  W  L  I  S  R  D  N  I  *  L  F  W  L  I  L  Y  L  I  T  D  I  I  I  G  K  </second_frame>
            <third_frame>   *  F  F  Q  Q  W  *  N  L  L  T  H  *  V  T  V  Y  F  V  A  R  A  S  *  M  R  N  *  *  S  N  I  *  L  H  *  D  L  H  D  L  Y  L  Q  V  S  C  M  C  V  A  V  N  Y  L  Y  P  S  L  H  R  *  N  S  *  C  L  Q  I  I  L  P  V  L  F  L  V  D  S  V  S  *  W  E  F  *  F  M  S  V  T  P  G  *  R  R  L  A  L  A  V  L  H  F  L  E  G  S  I  L  I  N  I  G  D  M  L  S  S  C  K  V  G  L  C  E  Y  F  A  P  L  L  T  I  A  P  L  L  *  I  E  G  L  I  D  C  Y  P  H  N  I  S  V  M  *  H  D  T  Y  I  C  Q  P  F  F  P  S  V  L  F  N  *  L  D  V  A  G  A  R  D  Q  F  L  T  Q  G  I  I  R  F  K  M  T  Y  Q  N  V  *  L  P  Q  C  L  L  I  Y  I  S  L  D  F  R  C  C  D  F  C  E  A  Q  V  L  G  R  F  S  L  K  V  T  K  S  V  *  K  F  S  V  I  L  R  I  Y  Y  N  L  R  C  A  I  T  L  G  L  M  V  W  V  L  G  *  Y  Q  E  T  T  Y  N  Y  S  G  *  F  C  I  *  S  L  I  L  L  L  E  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111691" stop="111906"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVSASFMYVCCCQLPISVLASLEFIVFADHFASPLLGRQRQLMGILVHVSDPWMKEIGSCCASFFGRKYSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D15.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111648" stop="111842"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EINNPIYDFIRIFMICICKFHVCVLLSITYIRPCIARIHSVCRSFCQSSSWSTASVNGNSSSCQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="109386" PGL_stop="109177"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109386" e_stop="109177"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="109386" e_stop="109177" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109386" stop="109177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCACCGTCAGGAGAAGATAAGGAAGCGATCGGAGCAGAAAATCCAGTAGGTCTACGAGGACCAGGAGACGGTGCCGCTTGATCATCGTACTTCCTCTTGTTGTTACCGGCATCTGGTGCACCGTACTGTGCTTCTTCTGCCATTGTTGCTTTCGATTTGCTCAGATTTGGGGTAAAAGGAGAGCAGCGGCGGTAGGGTTTTCGAAACCC</gDNA_template>
            <first_frame> S  T  V  R  R  R  *  G  S  D  R  S  R  K  S  S  R  S  T  R  T  R  R  R  C  R  L  I  I  V  L  P  L  V  V  T  G  I  W  C  T  V  L  C  F  F  C  H  C  C  F  R  F  A  Q  I  W  G  K  R  R  A  A  A  V  G  F  S  K  P </first_frame>
            <second_frame>  A  P  S  G  E  D  K  E  A  I  G  A  E  N  P  V  G  L  R  G  P  G  D  G  A  A  *  S  S  Y  F  L  L  L  L  P  A  S  G  A  P  Y  C  A  S  S  A  I  V  A  F  D  L  L  R  F  G  V  K  G  E  Q  R  R  *  G  F  R  N   </second_frame>
            <third_frame>   H  R  Q  E  K  I  R  K  R  S  E  Q  K  I  Q  *  V  Y  E  D  Q  E  T  V  P  L  D  H  R  T  S  S  C  C  Y  R  H  L  V  H  R  T  V  L  L  L  P  L  L  L  S  I  C  S  D  L  G  *  K  E  S  S  G  G  R  V  F  E  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0216D15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 288 chains have been computed
$ 
$ memory statistics:
$ 1432200 bytes spliced alignments in total
$ 223 spliced alignments have been stored
$ 6422 bytes was the average size of a spliced alignment
$ 31896 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1772 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 307 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 22:22:03
-->
