<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-24 23:23:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330683" ref_strand="+" ref_description="SGN-E330683 [cTOD-8-K9]">
      <seq>cacgagatacttgttctggattttcgttgataaagaaacttctaaacggctatggtgtgaattcaacaaacaaataaacaaatccttctgcaaatctcaattttcatggcggcgggaagctctacacgtattttcctttgtatacttcaacaattgcttttatagagtcaaattcgacttgatacgatgacgatcaatccggagagtattacatcgtcaagcgacggcaataacaacctccgaaggcggcgtancggcggcggcggcggtgatagatctgtgaatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatgtaacgagtgacgtcatggatggaagtggaaacggaggattggatagggtgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="3692" stop="4761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3992" g_stop="4167" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4168" i_stop="4243" i_length="76">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4244" g_stop="4461" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="394" r_length="218" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E330683" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3992" e_stop="4167"/>
          <exon e_start="4244" e_stop="4461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTG</genome_strand>
        <mrna_strand>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG............................................................................ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTANCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315515" ref_strand="+" ref_description="SGN-E315515 [cTOA-22-N24]">
      <seq>aagaaacttctaaacggctatggtgtgaattcaacaaacaaataaacaaatccttctgcaaatctcaattttcatggcggcgggaagctctacacgtattttcctttgtatacttcaacaattgcttttatagagtcaaattcgacttgatacgatgacgatcaatccggagagtattacatcgtcaagcgacggcaataacaacctccgaaggcggcgtagcggcggcggcggcggtgatagatctgtgaatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatgtaacgagtgacgtcatggatggaagtggaaacggaggattggatagggtgagtgaggctgtgagtacgacgattgggaagattagtgatggagatggaattcaggaggagcagaggaaagcgaatgaaacgacgccgttgaagtatgtttatagagcgtcggcaccggctcaccggcggaacaaggaaagtcctcttagttcggccgctattttcaaacagagtcatgctggcttactcaatctctgtatagtggtgcttattgccgtaaacagcaggctgattattgagaatttgatgaagtatggcttgttaattgggtcaggcttctggagtagttcaacatcagtaagagatggccacttctgatgtgctgtcttagtcttccgattttcccctctgctgcttttcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="3724" stop="7341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4024" g_stop="4167" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4168" i_stop="4243" i_length="76">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4244" g_stop="4628" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="529" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="6006" i_length="1378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6007" g_stop="6087" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="610" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6088" i_stop="6846" i_length="759">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6847" g_stop="6920" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="683" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6921" i_stop="7002" i_length="82">
            <donor d_prob="0.825" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7003" g_stop="7041" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="722" r_length="39" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E315515" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4024" e_stop="4167"/>
          <exon e_start="4244" e_stop="4628"/>
          <exon e_start="6007" e_stop="6087"/>
          <exon e_start="6847" e_stop="6920"/>
          <exon e_start="7003" e_stop="7041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAGGTAAGTTCTGAATTTGAGGTACTTAATTAATTGTTTCGTTCATTACACTACTCGCTAAGCAAGGAATCAGGACTTTTTAGCTAATGTGATTGGTTGCTGAGGCATGATTTAAATTTTATGAATTCAAACTTAGACATGCTATTTGTTGTGATTTTAATCATTTTTACGTGTAAATTTATGTGTTTGCATCGATAGTAGTGCTTGGACACTCCATCTGCCACTGATTGGTCGTTGATTAGCTTTTTGAGCTACAGTAAAAAGTTGTTCTTCTGTTCAGCAGACTTTATTTTTAAACCTCACCACTATAATTATTTAAGAATTTGTTTCTAATTCTAATAAATAAAATACGTGTTAGGTTCCAGTAAGTATTGAGTACAATTCTGTCCAACAGAATCCATTAATCCAACTAGAAAACATTGCAAAGATGAAACTTTTGCCCAAGGGGCAAAAAATAAAAAATACTAGGTGATTCTTTCTGTTTGTTCTAGCCTCCTGATTCATGTTGTTGGTGGGAGGTGGCAGGTATCATGTGGACTTAATCGAGGTGCGCGAAAGTTGGCTCGGTCACCACGGTATAAAAAGGGACCTTTTGCACAAATGGCAATAATTTTGTTTCTACTTACACATGTACTTCAAGCAATAACTACCTCCATATTAGTTGGAAACATAGGCTGGTATTAGTAGGTTTGCTATGCTGAAAGCTGCAAACTACCTCGAGTATACTCAATTTTATCTCATAAGAAAGGACTTTAAATAAAAATCTCAGGAACCTATATTTTGTTCTCGGTTCTTTGGTTAAGTTCTTTTGGGTGCAAAAAGGATTACTCCAGGAGCACCAAAAAGGTATGCCAGTTGCCGACTTTCAACCAGTGAGCATCTTACGAGCAGCTATTGTTACCCTCAGCAGAGAGCATAGTAATTTTGTTAAGAGGGTCACGATCCTTGCAGGATTGAGGAAGATGCCATTTATAATGGAGCCTGGTCGCTATGATTTTAAGAACAAGATATGTGGAATAGACGATGAGCCAATGCGCCGTTTGGTTTGATTAAAAATAGAAGCTTTTGCTGTCAGTTGAATTTATTAAATTTTATTCCTATTGTATTGTGCTTAGTTTATGGGTGGAAAAGCAGTAGGTGACTTGACAATGATAGAATTGGCATATACTGTTTTAATTGCATTATCATCATTCACTAATGTTTCATAAGCTAACCAAGACAGTGGAAGTTAACAATTTCTGGTGTAAAGAATCTCAAATTCACAGTATTTGGAGTTGCATTCAGGTGTCTTATGGTGATATATAGCATAATTAGTCTGAATTCCCCGTAAATAAGTGGCTGTAGAGCGCTTCTCTAATTTAGTTGGTGCATCTTGTTGCAGAGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAGGTATGTATCTCTCTAATGTGAGTTCTCTGTTCCAGTTGGCTAGACAGTTGAAATCTTCCCCATATATGATTAATCTTTATTGACATCAAAGAATCACTCTTAGGGGTGGTAATGTGGCTGGCCGAACAAGTGAATAGCTTAGAATTGTAGTGTTTTATTAAAAACAATTGAAGGAAATCATAGGGTTATGTACTCTGAGAGCCCTAAGTGTTTAGTTTGTCATTGCAGTAGATGAATATGTATTTAATTAAGCACTTAGTGAGGAACCCACATCCCATATTGGGAGTATTTCCACCCTGAAATCTACTGGGAAATATGAAACTTTATAAATTGCTTTCCAAAGTGCTATGCTGTTGCCGGAAGATTATGGTCTCAAAATTCAAATAGTTATCATGAAAATCTGGAAAGGGGATGGGGATAATGGGTTTTGGAAGAATCTGATAGAGTGAGAACATGTGAATTGCAATTAGAATCATGAATTTTAGGGATTTTTTGTAAATAATTGAAAAATGACAGAAAAGTTGGAGGGTGAGGGGGAGAGGAACAAGGTGAGATGGCACATTATCATGGGAAAAAGCACAGTAGAAAGTGGCGGGCCGTGACGGTTGAAATCTCTCCTGTCTGAACTTGCCAACTTGCCCCGTTGCTCTCTCTAATCCCTGTAACGTCTTAGCAACTATCGGGTTATAAGATATGAATATATTTCAGAGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGT</genome_strand>
        <mrna_strand>AAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG............................................................................ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGA-TGGCCACTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCCTCTGCTGCTTTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329851" ref_strand="+" ref_description="SGN-E329851 [cTOD-3-N9]">
      <seq>gctctacacgtattttcctttgtatacttcaacaattgcttttatagagtcaaattcgacttgatacgatgacgatcaatccggagagtattacatcgtcaagcgacggcaataacaacctccgaaggcggcgtagcggcggcggcggcggtgatagatctgtgaatgatgtgacggagttggattcgagctctgtggatgcttcgagtagctcggatgatgtaacgagtgacgtcatggatggaagtggaaacggaggattggatagggtgagtgaggctgtgagtacgacgattgggaagattagtgatggagatggaattcaggaggagcagaggaaagcgaatgaaacgacgccgttgaagtatgtttatagagcgtcggcaccggctcaccggcggaacaaggaaagtcctcttagttcggccgctattttcaaacagagtcatgctggcttactcaatctctgtatagtggtgcttattgccgtaaacagcaggctgattattgagaatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="3810" stop="6385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4110" g_stop="4167" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4168" i_stop="4243" i_length="76">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4244" g_stop="4628" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="443" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4629" i_stop="6006" i_length="1378">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6007" g_stop="6085" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="522" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E329851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4110" e_stop="4167"/>
          <exon e_start="4244" e_stop="4628"/>
          <exon e_start="6007" e_stop="6085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCGGTATGTTCACGTTCTACTCCATTTTTTTTTTTTGCTTCAAATTTCAACTTGATCATTACTTTCTAGTGATTTCTAGACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAGGTAAGTTCTGAATTTGAGGTACTTAATTAATTGTTTCGTTCATTACACTACTCGCTAAGCAAGGAATCAGGACTTTTTAGCTAATGTGATTGGTTGCTGAGGCATGATTTAAATTTTATGAATTCAAACTTAGACATGCTATTTGTTGTGATTTTAATCATTTTTACGTGTAAATTTATGTGTTTGCATCGATAGTAGTGCTTGGACACTCCATCTGCCACTGATTGGTCGTTGATTAGCTTTTTGAGCTACAGTAAAAAGTTGTTCTTCTGTTCAGCAGACTTTATTTTTAAACCTCACCACTATAATTATTTAAGAATTTGTTTCTAATTCTAATAAATAAAATACGTGTTAGGTTCCAGTAAGTATTGAGTACAATTCTGTCCAACAGAATCCATTAATCCAACTAGAAAACATTGCAAAGATGAAACTTTTGCCCAAGGGGCAAAAAATAAAAAATACTAGGTGATTCTTTCTGTTTGTTCTAGCCTCCTGATTCATGTTGTTGGTGGGAGGTGGCAGGTATCATGTGGACTTAATCGAGGTGCGCGAAAGTTGGCTCGGTCACCACGGTATAAAAAGGGACCTTTTGCACAAATGGCAATAATTTTGTTTCTACTTACACATGTACTTCAAGCAATAACTACCTCCATATTAGTTGGAAACATAGGCTGGTATTAGTAGGTTTGCTATGCTGAAAGCTGCAAACTACCTCGAGTATACTCAATTTTATCTCATAAGAAAGGACTTTAAATAAAAATCTCAGGAACCTATATTTTGTTCTCGGTTCTTTGGTTAAGTTCTTTTGGGTGCAAAAAGGATTACTCCAGGAGCACCAAAAAGGTATGCCAGTTGCCGACTTTCAACCAGTGAGCATCTTACGAGCAGCTATTGTTACCCTCAGCAGAGAGCATAGTAATTTTGTTAAGAGGGTCACGATCCTTGCAGGATTGAGGAAGATGCCATTTATAATGGAGCCTGGTCGCTATGATTTTAAGAACAAGATATGTGGAATAGACGATGAGCCAATGCGCCGTTTGGTTTGATTAAAAATAGAAGCTTTTGCTGTCAGTTGAATTTATTAAATTTTATTCCTATTGTATTGTGCTTAGTTTATGGGTGGAAAAGCAGTAGGTGACTTGACAATGATAGAATTGGCATATACTGTTTTAATTGCATTATCATCATTCACTAATGTTTCATAAGCTAACCAAGACAGTGGAAGTTAACAATTTCTGGTGTAAAGAATCTCAAATTCACAGTATTTGGAGTTGCATTCAGGTGTCTTATGGTGATATATAGCATAATTAGTCTGAATTCCCCGTAAATAAGTGGCTGTAGAGCGCTTCTCTAATTTAGTTGGTGCATCTTGTTGCAGAGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGA</genome_strand>
        <mrna_strand>GCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG............................................................................ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690110" ref_strand="+" ref_description="SGN-E690110 [LH_Ea02K12]">
      <seq>gtcatgctggcttactcgatctctgtatagtggtgcttattgcatttaaacagcaggctgattattgagaatttgatgaatagggttcttggtgttcatgttgcactggcaatattttgactactattgcagaatggcttgttaattgggtctggcttctggagtatttcaacatcattaagagattggcctcttctgatgtgctgtcttagtcttccgattttccctcttgctgcttttcttgtccagaaaatggcacggacgaagtatatgactgaacatgtagttgtcacttttcacataattataacgacagcttccattttgtatccagttctggtcatcctcaggtgtgattctgcttttctatccggagtcacactgatgatgtttgcttgcattgtgaggatgaaactaggttcttatgcacatacaaattaggatatgagacagcttgtccaggctgtgattgagggtgagaattccgaaatcaactactcttacaatgttagtttcaagagtttggcttacttcatggttgctccatctttatgcctatcagcttagctatcctcgctctgcatccattcggaagggatggctggcccgccaactcatcaatctggaaatttttacaggattaatgggatttatccttgaccactatattaacccgattgtgctaagctcacaacatacatttcaaggatatcttttatccaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="5708" stop="9762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6008" g_stop="6087" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6088" i_stop="6795" i_length="708">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6796" g_stop="6920" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="206" r_length="125" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6921" i_stop="7002" i_length="82">
            <donor d_prob="0.825" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7003" g_stop="7078" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="282" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7079" i_stop="7289" i_length="211">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.906" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7290" g_stop="7357" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="350" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7358" i_stop="8129" i_length="772">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8130" g_stop="8253" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="474" r_length="124" r_score="0.919"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8254" i_stop="8434" i_length="181">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.761" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8435" g_stop="8521" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="562" r_length="88" r_score="0.954"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8522" i_stop="9215" i_length="694">
            <donor d_prob="0.883" d_score="0.92"/>
            <acceptor a_prob="0.803" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9216" g_stop="9317" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="664" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9318" i_stop="9400" i_length="83">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.764" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9401" g_stop="9462" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="726" r_length="62" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E690110" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6008" e_stop="6087"/>
          <exon e_start="6796" e_stop="6920"/>
          <exon e_start="7003" e_stop="7078"/>
          <exon e_start="7290" e_stop="7357"/>
          <exon e_start="8130" e_stop="8253"/>
          <exon e_start="8435" e_stop="8521"/>
          <exon e_start="9216" e_stop="9317"/>
          <exon e_start="9401" e_stop="9462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGC-CGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAGGTATGTATCTCTCTAATGTGAGTTCTCTGTTCCAGTTGGCTAGACAGTTGAAATCTTCCCCATATATGATTAATCTTTATTGACATCAAAGAATCACTCTTAGGGGTGGTAATGTGGCTGGCCGAACAAGTGAATAGCTTAGAATTGTAGTGTTTTATTAAAAACAATTGAAGGAAATCATAGGGTTATGTACTCTGAGAGCCCTAAGTGTTTAGTTTGTCATTGCAGTAGATGAATATGTATTTAATTAAGCACTTAGTGAGGAACCCACATCCCATATTGGGAGTATTTCCACCCTGAAATCTACTGGGAAATATGAAACTTTATAAATTGCTTTCCAAAGTGCTATGCTGTTGCCGGAAGATTATGGTCTCAAAATTCAAATAGTTATCATGAAAATCTGGAAAGGGGATGGGGATAATGGGTTTTGGAAGAATCTGATAGAGTGAGAACATGTGAATTGCAATTAGAATCATGAATTTTAGGGATTTTTTGTAAATAATTGAAAAATGACAGAAAAGTTGGAGGGTGAGGGGGAGAGGAACAAGGTGAGATGGCACATTATCATGGGAAAAAGCACAGTAGAAAGTGGCGGGCCGTGACGGTTGAAATCTCTCCTGTCTGAACTTGCCAACTTGCCCCGTTGCTCTCTCTAATCCCTGTAACGTCTTAGCAACTATCGGGTTATAAGATATGAATATATTTCAGAGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAGGTTTGTTCTCATACGAGGTCATGGAACTTTGATATATACATCCTCCTAAGAAGTTGCTAAGTGAGCCTTCACTGGCGGGATGTCTCTCAGTGTGTGTTGTAAAATTGAGGCGATGTTATGGTAGAACTGGTGAATTTAAATGTCAACGGTGCACTATTATCTGGGTTGTAGTAGTCGTGCTTATGAACTAATTTTAATTTCTAATTTGGATTTTCGTCAACAGATCATCTTTGAACATTAACCTGTTGCATTTTGGATTGTAACGGAACTTTATGGTTGAATTAGATTAAGAAATTAGAGAAGTAGTAAAAGAAAATTAGTCGTTTATCTGAATTAGAAATTTGTTGCATGCCACTATGTCCATATGGACAAGGGAACAAGTGAAACATTGCTAATTCAGAGTTTAAAGCCATATTTGAACTTAAATTCACATGGTTTATACTTCATCTATTTCAACGAATTGCAGTTTTTATTCTTTCGTCCATATAAGGATAGTTTATGTGGAATTATTATTTGTGCACTACGTGTATATGTTTTTATTTTTTCTTCGTTGCTCTTTTCTTCTCTATAGACAGTGGTTGCCTAAGGTCTAACGGATGCTTCTTTTCAATGCCTTTTGCCTTTGATTACACTGGGTCGGATAGCTGCTTGTTCAAACTGTGTTGAAATTTAAGTTGAGAGGAGAGGATCTTCAATTATGTTTGCCAACTCTATTTTTTTGCTTATGTACATTGAAATATCTAGTGAGTCAGAGGTATTTTCAATTTCACAGGTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATG-CTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCAT</genome_strand>
        <mrna_strand>GTCATGCTGGCTTACTCGATCTCTGTATAGTGGTGCTTATTGCATTTAAACAGCAGGCTGATTATTGAGAATTTGATGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTCTTGGTGTTCATGTTGCACTGGCAATATTTTGACTACTATTGCAGAATGGCTTGTTAATTGGGTCTGGCTTCTGGAGTATTTCAACATCATTAAGAGATTGGCCTCTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCCAGAAAATGGCACGGACGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTTTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGATTCTGCTTTTCTATCCGGAGTCACACTGATGATGTTTGCTTGCATTGTGAGGATGAAACTAGGTTCTTATGCACATACAAATTAGGATATGAGACAGCTTGTCCAGGCTGTGATTGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCAAGAGTTTGGCTTACTTCATGGTTGCTCCATCTTTATGCCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGATGGCTGGCCCGCCAACTCATCAATCTGGAAATTTTTACAGGATTAATGGGATTTATCCTTGACCAC...................................................................................TATATTAACCCGATTGTGCTAAGCTCACAACATACATTTCAAGGATATCTTTTATCCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380039" ref_strand="+" ref_description="SGN-E380039 [TUS-3-I16]">
      <seq>cacttctgatgtgctgtcttagtcttccgattttccctcttgctgcttttcttgtcgagaaaatggcacagaagaagtatatgactgaacatgtagttgtcactcttcacataattataacgacagcttccattttgtatccagttctggtcatcctcaggtgtgattctgcttttctatcgggtgtcacactgatgatgtttgcttgcattgtgtggatgaaactagtttcttatgcacatacaaattatgatatgagacagcttgcaaagtctgtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctantaagattggtggnaacgcaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="6689" stop="10960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6905" g_stop="6920" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6921" i_stop="7002" i_length="82">
            <donor d_prob="0.825" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7003" g_stop="7078" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="92" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7079" i_stop="7289" i_length="211">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7290" g_stop="7357" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="160" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7358" i_stop="8129" i_length="772">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8130" g_stop="8253" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="284" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8254" i_stop="8434" i_length="181">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8435" g_stop="8521" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="371" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8522" i_stop="9248" i_length="727">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9249" g_stop="9317" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="440" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9318" i_stop="9400" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9401" g_stop="9537" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="577" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9538" i_stop="10235" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="10236" g_stop="10317" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="659" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="10318" i_stop="10440" i_length="123">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.245" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="10441" g_stop="10461" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="680" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="10462" i_stop="10630" i_length="169">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.609" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="10631" g_stop="10660" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="710" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E380039" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6905" e_stop="6920"/>
          <exon e_start="7003" e_stop="7078"/>
          <exon e_start="7290" e_stop="7357"/>
          <exon e_start="8130" e_stop="8253"/>
          <exon e_start="8435" e_stop="8521"/>
          <exon e_start="9249" e_stop="9317"/>
          <exon e_start="9401" e_stop="9537"/>
          <exon e_start="10236" e_stop="10317"/>
          <exon e_start="10441" e_stop="10461"/>
          <exon e_start="10631" e_stop="10660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAGGTTTGTTCTCATACGAGGTCATGGAACTTTGATATATACATCCTCCTAAGAAGTTGCTAAGTGAGCCTTCACTGGCGGGATGTCTCTCAGTGTGTGTTGTAAAATTGAGGCGATGTTATGGTAGAACTGGTGAATTTAAATGTCAACGGTGCACTATTATCTGGGTTGTAGTAGTCGTGCTTATGAACTAATTTTAATTTCTAATTTGGATTTTCGTCAACAGATCATCTTTGAACATTAACCTGTTGCATTTTGGATTGTAACGGAACTTTATGGTTGAATTAGATTAAGAAATTAGAGAAGTAGTAAAAGAAAATTAGTCGTTTATCTGAATTAGAAATTTGTTGCATGCCACTATGTCCATATGGACAAGGGAACAAGTGAAACATTGCTAATTCAGAGTTTAAAGCCATATTTGAACTTAAATTCACATGGTTTATACTTCATCTATTTCAACGAATTGCAGTTTTTATTCTTTCGTCCATATAAGGATAGTTTATGTGGAATTATTATTTGTGCACTACGTGTATATGTTTTTATTTTTTCTTCGTTGCTCTTTTCTTCTCTATAGACAGTGGTTGCCTAAGGTCTAACGGATGCTTCTTTTCAATGCCTTTTGCCTTTGATTACACTGGGTCGGATAGCTGCTTGTTCAAACTGTGTTGAAATTTAAGTTGAGAGGAGAGGATCTTCAATTATGTTTGCCAACTCTATTTTTTTGCTTATGTACATTGAAATATCTAGTGAGTCAGAGGTATTTTCAATTTCACAGGTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGG-AACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATC</genome_strand>
        <mrna_strand>CACTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTANTAAGATTGGTGGNAACGC-AAAACAATTGATGAG...........................................................................................................................TATTGGAGACTTTGGAATATG.........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207478" ref_strand="+" ref_description="SGN-E207478 [cLEC-36-M23]">
      <seq>cacttctgatgtgctgtcttagtcttccgattttccctcttgctgcttttcttgtcgagaaaatggcacagaagaagtatatgactgaacatgtagttgtcactcttcacataattataacgacagcttccattttgtatccagttctggtcatcctcaggtgtgattctgcttttctatcgggtgtcacactgatgatgtttgcttgcattgtgtggatgaaactagtttcttatgcacatacaaattatgatatgagacagcttgcaaagtctgtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="6689" stop="9815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6905" g_stop="6920" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6921" i_stop="7002" i_length="82">
            <donor d_prob="0.825" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7003" g_stop="7078" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="92" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7079" i_stop="7289" i_length="211">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7290" g_stop="7357" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="160" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7358" i_stop="8129" i_length="772">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8130" g_stop="8253" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="284" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8254" i_stop="8434" i_length="181">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8435" g_stop="8521" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="371" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8522" i_stop="9248" i_length="727">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9249" g_stop="9317" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="440" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9318" i_stop="9400" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9401" g_stop="9515" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="555" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E207478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6905" e_stop="6920"/>
          <exon e_start="7003" e_stop="7078"/>
          <exon e_start="7290" e_stop="7357"/>
          <exon e_start="8130" e_stop="8253"/>
          <exon e_start="8435" e_stop="8521"/>
          <exon e_start="9249" e_stop="9317"/>
          <exon e_start="9401" e_stop="9515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTGATGTGCTGGTAGTGTTCTTAAGACCTTTCTTAATCTGTGTATTATGCTCACATGCGAAATAAAACATTGAAGTTTTTTACTTACTTGCAGTCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACATGTAAGTCAGAATAACCTCTTCGTTCTTCACTTCCTCTTTTTGATAATTCTTCCATATCAATTAAATGTCACTGCTCAGACATGGACCAGTCACAGTGTTCAAGAAGGTATACACCAGAATAATTCTGGCTCTCATGACTTGTCTGAACTCGTGTTACCTTTTATTGTTTGACTTTATGTCCAGCCAGTAACTTTTCTAACTGATCCTGCAGGTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAGGTTTGTTCTCATACGAGGTCATGGAACTTTGATATATACATCCTCCTAAGAAGTTGCTAAGTGAGCCTTCACTGGCGGGATGTCTCTCAGTGTGTGTTGTAAAATTGAGGCGATGTTATGGTAGAACTGGTGAATTTAAATGTCAACGGTGCACTATTATCTGGGTTGTAGTAGTCGTGCTTATGAACTAATTTTAATTTCTAATTTGGATTTTCGTCAACAGATCATCTTTGAACATTAACCTGTTGCATTTTGGATTGTAACGGAACTTTATGGTTGAATTAGATTAAGAAATTAGAGAAGTAGTAAAAGAAAATTAGTCGTTTATCTGAATTAGAAATTTGTTGCATGCCACTATGTCCATATGGACAAGGGAACAAGTGAAACATTGCTAATTCAGAGTTTAAAGCCATATTTGAACTTAAATTCACATGGTTTATACTTCATCTATTTCAACGAATTGCAGTTTTTATTCTTTCGTCCATATAAGGATAGTTTATGTGGAATTATTATTTGTGCACTACGTGTATATGTTTTTATTTTTTCTTCGTTGCTCTTTTCTTCTCTATAGACAGTGGTTGCCTAAGGTCTAACGGATGCTTCTTTTCAATGCCTTTTGCCTTTGATTACACTGGGTCGGATAGCTGCTTGTTCAAACTGTGTTGAAATTTAAGTTGAGAGGAGAGGATCTTCAATTATGTTTGCCAACTCTATTTTTTTGCTTATGTACATTGAAATATCTAGTGAGTCAGAGGTATTTTCAATTTCACAGGTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGT</genome_strand>
        <mrna_strand>CACTTCTGATGTGCTG..................................................................................TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT...................................................................................................................................................................................................................GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210999" ref_strand="+" ref_description="SGN-E210999 [cLEC-69-N10]">
      <seq>gtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagcttagctatcctcgctctgcatccattcggaagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctataaagattggtggaacgcaaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatctatttcccatgcttaagaaatggcatacctaagggagttgcaatggtgatctctttctttatatctgctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtgggcaacatgacattctggtgctttttctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="8131" stop="12567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8245" g_stop="8253" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8254" i_stop="8434" i_length="181">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8435" g_stop="8521" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="96" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8522" i_stop="9215" i_length="694">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9216" g_stop="9317" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9318" i_stop="9400" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9401" g_stop="9537" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="335" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9538" i_stop="10235" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10236" g_stop="10317" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10318" i_stop="10440" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.245" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10441" g_stop="10461" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="438" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10462" i_stop="10630" i_length="169">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10631" g_stop="10693" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10694" i_stop="11671" i_length="978">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11672" g_stop="11719" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="549" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11720" i_stop="11851" i_length="132">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11852" g_stop="11914" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="612" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="11915" i_stop="12084" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="12085" g_stop="12138" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="666" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="12139" i_stop="12231" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="12232" g_stop="12267" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="702" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E210999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8245" e_stop="8253"/>
          <exon e_start="8435" e_stop="8521"/>
          <exon e_start="9216" e_stop="9317"/>
          <exon e_start="9401" e_stop="9537"/>
          <exon e_start="10236" e_stop="10317"/>
          <exon e_start="10441" e_stop="10461"/>
          <exon e_start="10631" e_stop="10693"/>
          <exon e_start="11672" e_stop="11719"/>
          <exon e_start="11852" e_stop="11914"/>
          <exon e_start="12085" e_stop="12138"/>
          <exon e_start="12232" e_stop="12267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAGGTACTTTTGGAGTTCTCTCGTCCTAGTTTCTAATTTGTTTTTGAGCTATTTTTTTGTCTGCTTACTTTCTAATCTTTTGTGCACTATTACAACAACTTACCAAGTATAATTCCAAAAGTGGGGTTTGGGTAGGGGGAGGTGTACACAACCCTTTGCCCCAACCCTTGAGGGGTAGAAAAAAATGTTTCCGATAGACCCTCGATCGAGAACATGTCTGAAAGAATTGCAAAAGTAAAAAGCAATGATCAAAATAATGAAGAAAGAAAAGCAGCGACAATAAAATAGTGTAGATACCCAAAGTAAATGAATTAACTGTTACAATAATTGAAGGTTAAGATATTTATCCTTGTATGCTGAGGTTAAAATTTTATCTCACACAAACATACTGCTTTTCCTTTTCTTTTTTTTTCTTATATAACATAAGCACAATCATACTGCTCTTAACCATTAGCATACTTGTTGAAATTTGAAGAGAGAGAAAATAAAGAAGAAAGACAGCAAGGGACATACACACTTGCATATTGAAGAAACAAGCTTCGATGTGATTTTCAACACTTTAACTCGAGTGATCTTGCTAGATAATGAAATGCACTTCAAAGTAGAGCACATAAGCTATTCGTGCAGATAAGCTTTTGTGCGATTAATATCTTAATATACACGAGACATGGATGAAAAAGTTTTTTTCCTGATGAAGGTTAAAGTGCTATTAGTATTTATGTTTTGTGACAGAGAAGTGAGAACAGTATAATATACGATCAAATAAGTGTTTTTTGGGTCCACATTATACTTCATATCTTTCATGTCATTTATTTTTCAGTTTGAGTTTTAAGTGTATGCCTGGTATCAAGCACTAGTCGCTGCTTTGTATAGTTTTATCCGCTTTCTACTTTACAAAAGTTTTGGCCTTACTATTGTATACTAGATCTTATTTTGTGATCTGTTGAATTAGTTTTAATTGCCACTTGATTCTTGGTGCAGGGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATT</genome_strand>
        <mrna_strand>GTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG...........................................................................................................................TATTGGAGACTTTGGAATATG.........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211067" ref_strand="+" ref_description="SGN-E211067 [cLEC-69-M10]">
      <seq>gtgaatgagggtgagaattccgaaatcaactactcttacaatgttagtttcgagagtttggcttacttcatggttgctccaactttatgctatcagcttagctatcctcgctctgcatccattcggaagggttggctggcccgccaactcatcaagctggtaatttttacaggattaatgggatttatcattgagcagtatattaacccgattgtgcgaagctcacgacatccatttgaaggaaaccttttatacgccatcgagagggtattgaagctttcagttccaattttatatgtctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctataaagattggtggaacgcaaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatctatttcccatgcttaagaaatggcatacctaagggagttgcaatggtgatctctttctttatatctgctgatttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="8131" stop="12203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8245" g_stop="8253" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8254" i_stop="8434" i_length="181">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.761" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8435" g_stop="8521" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="96" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8522" i_stop="9215" i_length="694">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9216" g_stop="9317" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="198" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9318" i_stop="9400" i_length="83">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9401" g_stop="9537" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="335" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9538" i_stop="10235" i_length="698">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10236" g_stop="10317" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="417" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10318" i_stop="10440" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.245" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10441" g_stop="10461" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="438" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10462" i_stop="10630" i_length="169">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10631" g_stop="10693" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="501" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="10694" i_stop="11671" i_length="978">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11672" g_stop="11719" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="549" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11720" i_stop="11851" i_length="132">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="11852" g_stop="11903" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="601" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E211067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8245" e_stop="8253"/>
          <exon e_start="8435" e_stop="8521"/>
          <exon e_start="9216" e_stop="9317"/>
          <exon e_start="9401" e_stop="9537"/>
          <exon e_start="10236" e_stop="10317"/>
          <exon e_start="10441" e_stop="10461"/>
          <exon e_start="10631" e_stop="10693"/>
          <exon e_start="11672" e_stop="11719"/>
          <exon e_start="11852" e_stop="11903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGAGGTATGACTAGTTTATTTCTTTGTCATGGATCCACATCTGATCTTGATTAAGGCTTCTCCTGAAAATTTTCTAGACAAACCAACTTCTCTATTTAAGCTTCGGTACTCGTTCTGGTATTTTGGTCATCTGAGATAATGTTCTGAATATGGAGTCTCTCAGTTAAGTTTTTAAATGTTTTCAGGGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAGGTAGGATCAGTTGACCTTTCTGAAGTTGTCAGTGACTTTCTTCCTTGGTAGAGTACTTACTACAAGTGCATTACAGCATCTGATGTTTCTCTAGATTCACCAAGATTTAATTAAATAACTCTGTTGAGCAATTTAGTTTGATTTTTGAAAAATTCCATTATCTTTTGTTTCCTGCCAAGTCTGCACAAATTTAAAGAGATTGTAGGTCTTTGATACTACTACCTTTTATGTGATTTTATTGCCAAGCATGTCCTTGCCTGAAGTATTCATATGCATGTTAAATGATGAAGCAATTGGACGTATGCGAAAAAGATTAAATTGGAGCACCAAATATTGATATGGTCGTTGGACAATTTTTTTTCAGTCACGTGCTGATATTATTTTGGAGTAGTACTTTTATTATTGCGAACATGTGCAGATCCTGCTTACGTTTGGAAGTACTTGTATTTCATACTGTATAATACTTGAATGTGGTGTGGGCAGATTCAGTGGGGCTACAGTTGGTGAATACTACAACTGAGGCCCCTACGGTCCTTTTTCCCATGGATTGAAGTCAAATTCCTTTCATAGTAATAGGAAATCAAGTATCATCAGTCATCTAAAAATGAAAATTTCATGAAATTTTTTACCAACTCTCTTACTATTTGTTCCACCAACTCATTAGTTTTGGATATGTTTATTCTGTTATCTGAAGCTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAGGTAAGTTCTCTTGAGCTTGACAGTTCAACGTGCCTTCACTCCTGTCAAAGTAAACTATATTAACTTTGAGCATCTTAATACAGTATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAGGTACTTTTGGAGTTCTCTCGTCCTAGTTTCTAATTTGTTTTTGAGCTATTTTTTTGTCTGCTTACTTTCTAATCTTTTGTGCACTATTACAACAACTTACCAAGTATAATTCCAAAAGTGGGGTTTGGGTAGGGGGAGGTGTACACAACCCTTTGCCCCAACCCTTGAGGGGTAGAAAAAAATGTTTCCGATAGACCCTCGATCGAGAACATGTCTGAAAGAATTGCAAAAGTAAAAAGCAATGATCAAAATAATGAAGAAAGAAAAGCAGCGACAATAAAATAGTGTAGATACCCAAAGTAAATGAATTAACTGTTACAATAATTGAAGGTTAAGATATTTATCCTTGTATGCTGAGGTTAAAATTTTATCTCACACAAACATACTGCTTTTCCTTTTCTTTTTTTTTCTTATATAACATAAGCACAATCATACTGCTCTTAACCATTAGCATACTTGTTGAAATTTGAAGAGAGAGAAAATAAAGAAGAAAGACAGCAAGGGACATACACACTTGCATATTGAAGAAACAAGCTTCGATGTGATTTTCAACACTTTAACTCGAGTGATCTTGCTAGATAATGAAATGCACTTCAAAGTAGAGCACATAAGCTATTCGTGCAGATAAGCTTTTGTGCGATTAATATCTTAATATACACGAGACATGGATGAAAAAGTTTTTTTCCTGATGAAGGTTAAAGTGCTATTAGTATTTATGTTTTGTGACAGAGAAGTGAGAACAGTATAATATACGATCAAATAAGTGTTTTTTGGGTCCACATTATACTTCATATCTTTCATGTCATTTATTTTTCAGTTTGAGTTTTAAGTGTATGCCTGGTATCAAGCACTAGTCGCTGCTTTGTATAGTTTTATCCGCTTTCTACTTTACAAAAGTTTTGGCCTTACTATTGTATACTAGATCTTATTTTGTGATCTGTTGAATTAGTTTTAATTGCCACTTGATTCTTGGTGCAGGGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAA</genome_strand>
        <mrna_strand>GTGAATGAG.....................................................................................................................................................................................GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG...................................................................................TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG...........................................................................................................................TATTGGAGACTTTGGAATATG.........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGATTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379436" ref_strand="+" ref_description="SGN-E379436 [TUS-3-I16](-)">
      <seq>ctggctctgcatgttctacagcctctttcatctttggttaaatatacttgcggaagttctgcgatttggggatcgtgagttctataaagattggtggaacgcaaaaacaattgatgagtattggagactttggaatatgcctgtacataagtggatggttcgtcacatctatttcccatgcttaagaaatggcatacctaagggagttgcaatggtgatctctttctttatatctgctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtggacaacatgacattctggtgctttttctgcattgttggtcaaccaatgtgtgtgcttctgtattaccatgatgtgatgaatagaaatggtagctcaagttaaagcttcatcgtcgatcattttgttggaccgcgactcactagtgagtatcgcagttttgaactatctgatgctttacttatatgcttgaaatggagaaaattcttttctaaaatttgacaccaaggagagtgaacagaattgttgctttgtattatatctttcttttgatatttaagaaatgtatatcgatttttgttgaggtaaaatgtcataagctcaaattagtgatagtgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="9202" stop="12871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9502" g_stop="9537" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9538" i_stop="10235" i_length="698">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10236" g_stop="10317" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="118" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10318" i_stop="10440" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.245" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10441" g_stop="10461" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="139" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10462" i_stop="10630" i_length="169">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10631" g_stop="10693" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="202" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10694" i_stop="11671" i_length="978">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11672" g_stop="11719" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="250" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11720" i_stop="11851" i_length="132">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11852" g_stop="11914" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="313" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11915" i_stop="12084" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12085" g_stop="12138" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="367" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="12139" i_stop="12231" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="12232" g_stop="12571" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="708" r_length="341" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E379436" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9502" e_stop="9537"/>
          <exon e_start="10236" e_stop="10317"/>
          <exon e_start="10441" e_stop="10461"/>
          <exon e_start="10631" e_stop="10693"/>
          <exon e_start="11672" e_stop="11719"/>
          <exon e_start="11852" e_stop="11914"/>
          <exon e_start="12085" e_stop="12138"/>
          <exon e_start="12232" e_stop="12571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTGGTATGTCCTCTATATATGATTTATAAATTTAGTATGCTTATGCATTTTATTTGTAGTTCATTGTCTTTCTTCCCATATTTTTGGATGTTCCAATCTTATTTGCGAGGTTTTTTATACTTGATACTAAAACGAGTGTTAGGACATTCTTACTGTGTGTATTTTGTCATCATGCTTACCATTTTTTTCATTTCAAATATGTTTAACTAAACAGTTTTGTGTCACTTATTAACCTTTAAAGTGCAAATCACATTATACTTGAAACTAGATTATCAAACTGCCATGAGTACTGAATTGAGGGGGCGAAAATTTGTAGAACCAGAAGGTGCAAAACTGGAGGTGCTTAATGAATCTGAGTGGTTTTAATTCAGTAAAATTATATTCCTCCTCGATATATCTATCCAAAGACCAACACATAGCTGGCAACTGTTAAATGCCGGAGCTGGAATTTGAATGGGTATACTGCAAGACTCTTGTGTTAGATTATGAAAAGGTTCACATTTCAGGATGAAACGCCAGGGACTTATTTTGTTTTAACTGAAAAACTACTAATATATCGATTATTTTCATATATGGATTATGTGTTCTAGCATTGCAACAGAATGAATTCTATTTACATAGTACATCTCTTTGTAGACTGAATATACTTGTGGATCTTACCGCAACAGAATAGCTCTATTTACATAATAATCACTCTGTAGGTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAGGTATATTAAAACATCATACTGTCTTGTTCTTTTTGTTTCTTCATCCCAACAATTTCAGAGCTTGCTAGAGTTTCTCATTTATTTCTTTTTTTGTTGTTGCACCATTGTGGCTGCTGTTATCAGTATTGGAGACTTTGGAATATGGTATGTACTTCTTCCTTCTTTTTATGTCATTGCCGATTCTTATGCATGCAAATCATGTGTTTGTCTTCATTACCTAGAAGTGAAACTTTAATTAATATCGGCCTGGTTTAGTCTTTGTTGAACATTTTTTTTGGACATTAAGTAACCCAAGTGTTGGTGACAACTGCAGCCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAGGTACTTTTGGAGTTCTCTCGTCCTAGTTTCTAATTTGTTTTTGAGCTATTTTTTTGTCTGCTTACTTTCTAATCTTTTGTGCACTATTACAACAACTTACCAAGTATAATTCCAAAAGTGGGGTTTGGGTAGGGGGAGGTGTACACAACCCTTTGCCCCAACCCTTGAGGGGTAGAAAAAAATGTTTCCGATAGACCCTCGATCGAGAACATGTCTGAAAGAATTGCAAAAGTAAAAAGCAATGATCAAAATAATGAAGAAAGAAAAGCAGCGACAATAAAATAGTGTAGATACCCAAAGTAAATGAATTAACTGTTACAATAATTGAAGGTTAAGATATTTATCCTTGTATGCTGAGGTTAAAATTTTATCTCACACAAACATACTGCTTTTCCTTTTCTTTTTTTTTCTTATATAACATAAGCACAATCATACTGCTCTTAACCATTAGCATACTTGTTGAAATTTGAAGAGAGAGAAAATAAAGAAGAAAGACAGCAAGGGACATACACACTTGCATATTGAAGAAACAAGCTTCGATGTGATTTTCAACACTTTAACTCGAGTGATCTTGCTAGATAATGAAATGCACTTCAAAGTAGAGCACATAAGCTATTCGTGCAGATAAGCTTTTGTGCGATTAATATCTTAATATACACGAGACATGGATGAAAAAGTTTTTTTCCTGATGAAGGTTAAAGTGCTATTAGTATTTATGTTTTGTGACAGAGAAGTGAGAACAGTATAATATACGATCAAATAAGTGTTTTTTGGGTCCACATTATACTTCATATCTTTCATGTCATTTATTTTTCAGTTTGAGTTTTAAGTGTATGCCTGGTATCAAGCACTAGTCGCTGCTTTGTATAGTTTTATCCGCTTTCTACTTTACAAAAGTTTTGGCCTTACTATTGTATACTAGATCTTATTTTGTGATCTGTTGAATTAGTTTTAATTGCCACTTGATTCTTGGTGCAGGGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGA-ATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTC</genome_strand>
        <mrna_strand>CTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG...........................................................................................................................TATTGGAGACTTTGGAATATG.........................................................................................................................................................................CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGACAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAGAGTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCGATTTTTGTTGAGGTAAAATGTCATAAGCTCAAATTAGTGATAGTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693950" ref_strand="+" ref_description="SGN-E693950 [LH_Ea02K12](-)">
      <seq>ttcccatgcttaaggaatggcatccctaagggagttgcaatggtgatctctttctttatatcggctgttttccatgagctgtgtattgctgttccttgtcggctattcaagttttgggcattccttggaatcatgtttcagattcccttggtcatactaacgaacttcctgcaaaacaagttcaaaaactcgaatgtgggcaacatgacattctggtgttttttctgcattgttggtcaaccaatgggtgtgcttctgtattcccatgatgtgatgaatagaaatggtagctcaagttaaagcttcatcgtttatcattttgttggcccgcgcctcacgagggagtattgcagtcttgaactatctgatgttttacttatatgcttgaaataaagaaaattcttttttaaaatttgcccccaaggaactgacccgaatcgttgctttgtattatatctttcttttgatatttaagaaatgtatattattttttgtttgggtaaaatgtaataagctcaaattagatatagtgtcctaatttcgaattttccctatttactatttcccatgcattattgttatatccattaggccatttgttgcccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="11370" stop="12926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11672" g_stop="11719" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="78" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11720" i_stop="11851" i_length="132">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11852" g_stop="11914" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="141" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11915" i_stop="12084" i_length="170">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12085" g_stop="12138" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="195" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12139" i_stop="12231" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12232" g_stop="12626" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="590" r_length="395" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="619"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E693950" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11672" e_stop="11719"/>
          <exon e_start="11852" e_stop="11914"/>
          <exon e_start="12085" e_stop="12138"/>
          <exon e_start="12232" e_stop="12626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAGGTATGTGGTTTTTGTTCCCTTCCATCATCCATTTTTAAACCAGGTGGCGTATATAAGCTTATAAAAACAAAAAACAATTACGTGTCAACAAAATGATTGGCTTTCGATGACATGTGGTATCGTTATCTTCAGCTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAGGTAATGGATCATTCACGTGTGTGTAGTATATACAAGTATATGTATGATGGATATATATTCGGGGATAAGAAACGAGATGTAGTCATAAAATAGTGACACTGGAGCAAAGTTTATGTATCATCATTTGACAGTGTGAATATTGACATTTAGTGATGTTTCTCTCTGAGCAGATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAATGTATGTCTTTCCGCCTTGTTTTCATAAGCTTTCGATGATTTATTCTCTTTTTCGTGGGCATATCCATTGACAGTACGTCTCAACTTTTTTCAGGTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</genome_strand>
        <mrna_strand>GGAGTTGCAATGGTGATCTCTTTCTTTATATCGGCTGTTTTCCATGAG....................................................................................................................................CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG..........................................................................................................................................................................ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT.............................................................................................GTGGGCAACATGACATTCTGGTGTTTTTTCTGCATTGTTGGTCAACCAATGGGTGTGCTTCTGTATTCCCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTTTATCATTTTGTTGGCCCGCGCCTCACGAGGGAGTATTGCAGTCTTGAACTATCTGATGTTTTACTTATATGCTTGAAATAAAGAAAATTCTTTTTTAAAATTTGCCCCCAAGGAACTGACCCGAATCGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATTATTTTTTGTTTGGGTAAAATGTAATAAGCTCAAATTAGATATAGTGTCCTAATTTCGAATTTTCCCTATTTACTATTTCCCATGCATTATTGTTATATCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395486" ref_strand="+" ref_description="SGN-E395486 [TUS-16-L15](-)">
      <seq>tcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcgaaagtgaaagctctcaacctttcttctactggttggatgttggagacgggaaagagataaatctcgagaagtgtcctaggttcaatctgcagcatcaatgcatcaagtatctaggacctaaagaacgtgaatcgtatgaagtagttattcaggacgggaaacttgtctataaacaaaacggtgtctttgtggagacagtagagggttcaaaatggatctttgttcttagcacaacaagaacattgtacgtaggaaaaaagaagaaaggtgtgtttgaacactcgagtttcctatcgggtggtgcaactactgctgctggtagactcgttgctcatggtggcgttttgaaggctatttggccatacagcggacactatcaccccacggaagagaacttccgggaattcattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="-" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="17210" stop="14993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16910" g_stop="16839" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16838" i_stop="16244" i_length="595">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16243" g_stop="16062" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="253" r_length="181" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16061" i_stop="15962" i_length="100">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15961" g_stop="15873" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="342" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15872" i_stop="15781" i_length="92">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15780" g_stop="15693" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="430" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15692" i_stop="15588" i_length="105">
            <donor d_prob="0.785" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15587" g_stop="15292" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="726" r_length="296" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="-" ref_id="SGN-E395486" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16910" e_stop="16839"/>
          <exon e_start="16243" e_stop="16062"/>
          <exon e_start="15961" e_stop="15873"/>
          <exon e_start="15780" e_stop="15693"/>
          <exon e_start="15587" e_stop="15292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTGGTGAGTGTTTTGTTCCAAGATTTTGAATGTGTAGTTCCGGAAGTTGAAATGCAACCTACCTGACATCTTACGTTGTCTATTTCTCGTTGTAGGTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCTGTAAGTCCAAACTCTGCGATTTTTGTCCTAAAAAATGATAAGAACAACGAAATGATCCATTTTACGGCATTGTTGAATCTTAGAATGGTTCTTTTACTGTTTCAGAAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTCAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTT</genome_strand>
        <mrna_strand>TCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATG-AAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT....................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG............................................................................................GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCT.........................................................................................................AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTGAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395382" ref_strand="+" ref_description="SGN-E395382 [TUS-16-L15]">
      <seq>taatgaagtcgataagatgacaaggaagaattcgataaatttaaggaactgtgatccaaagaaactgatgttagagaccacattatcattcaagaatctggttcaagacttagatatatcagaatggaacgaaaaaaagacgagagcaacagtttcattacccgagccttcgattctgttttctccacgacctgttagtgagcttgatgctgctgctgttaagcttcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcgaaagtgaaagctctcaacctttcttctactggttggatgttggagacgggaaagagataaatctcgagaagtgtcctaggttcaatctgcagcatcaatgcatncagtatctaggacctaaagaacgtgaatcgtatgaagtagttattcaggacgggaaacttgtctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="-" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="17435" stop="15237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17135" g_stop="16839" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16838" i_stop="16244" i_length="595">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16243" g_stop="16062" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="478" r_length="181" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16061" i_stop="15962" i_length="100">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15961" g_stop="15873" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="567" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15872" i_stop="15781" i_length="92">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15780" g_stop="15693" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="655" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15692" i_stop="15588" i_length="105">
            <donor d_prob="0.785" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15587" g_stop="15537" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="706" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="-" ref_id="SGN-E395382" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17135" e_stop="16839"/>
          <exon e_start="16243" e_stop="16062"/>
          <exon e_start="15961" e_stop="15873"/>
          <exon e_start="15780" e_stop="15693"/>
          <exon e_start="15587" e_stop="15537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTGGTGAGTGTTTTGTTCCAAGATTTTGAATGTGTAGTTCCGGAAGTTGAAATGCAACCTACCTGACATCTTACGTTGTCTATTTCTCGTTGTAGGTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCTGTAAGTCCAAACTCTGCGATTTTTGTCCTAAAAAATGATAAGAACAACGAAATGATCCATTTTACGGCATTGTTGAATCTTAGAATGGTTCTTTTACTGTTTCAGAAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTAT</genome_strand>
        <mrna_strand>TAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATG-AAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT....................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG............................................................................................GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATNCAGTATCTAGGACCT.........................................................................................................AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211338" ref_strand="+" ref_description="SGN-E211338 [cLEC-70-F22]">
      <seq>tcatttgaagaaaaaaaagggttgggattttattttctcatctttacaactttttgtgatatttgaggttataaggcttttttagtatcttgctaaaaagaacttgggagatgactgttcgatcgaatagctttaaaggaacacatttggaaactattatacaatcgaataatgaagtcgataagatgacaaggaagaattcgataaatttaaggaactgtgatccaaagaaactgatgttagagaccacattatcattcaagaatctggttcaagacttagatatatcagaatggaacgaaaaaaagacgagagcaacagtttcattacccgagccttcgattctgttttctccacgacctgttagtgagcttgatgctgctgctgttaagcttcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacacttctactacgatatatggttcgaaagtgaaagctctcaacctttcttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="-" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="18799" stop="15575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18499" g_stop="18432" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18431" i_stop="17238" i_length="1194">
            <donor d_prob="0.731" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17237" g_stop="16839" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="466" r_length="399" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16838" i_stop="16244" i_length="595">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16243" g_stop="16062" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="647" r_length="181" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16061" i_stop="15962" i_length="100">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15961" g_stop="15875" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="734" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="-" ref_id="SGN-E211338" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18499" e_stop="18432"/>
          <exon e_start="17237" e_stop="16839"/>
          <exon e_start="16243" e_stop="16062"/>
          <exon e_start="15961" e_stop="15875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAAGAAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAGGTAATTTAATTTTTTTCCAATCTTTGATGTTGTTTTAAGACGTGGTGTTTTGTTTCTTTTTGTTTTTTGTTGTTCGAGTTTTAAGGTTCTTAGCATTGAATATATGGTATACGTATGTTTCGTGTTAAAAAAGATTTGAGTTTTTGCTACGTTTCGATGGGCTTTAGTTTAATCTTTTGTAAGTTTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGAAATTTTAATGTTTTTCACATATATATCTATGTTTCGTATCGAAAATACTAGTTATGCATCCGCCTCAGTATCTACTGAGCTTTAGAGGCCGATGTAAGTTTTCGATACGAGAGTATAAATATATAAGTAAAAAAATCTACTAAAATTTCAAAAAGATGTTGGATATGGGAACATAGTTTTAATTGTACTATGAATCTTAAAAGATTCGAATATATTTAGTTTAAATCCTGAACATGTCTCTAATAATAAGGTTTAGTTCAATTTTGTAATCAAGGTTACCTTTTTTTTAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGAACTTGAAATAATTGAAGTTTTTTTTTAATTCTAAAGTGGTGTTAGGAAGAGAAAAATATGTAGATGGATGAATTGATGATTTAGTTATATTTGCTAGTAATATTTTTTCTTTTTAGTTTATTCTTTGATCTTGAATCGAGGTTTTTTGGAAACAGTTTCTCTATCTCGAGGAGATAGGGTAAGGTTTGCGTACACTCTACCCTCTCGAGATGTATGTTGTTGTTGTAGTTCTTTCTTTGACCTTGAATCGATGGTTTTTTTGAAAACAGTCTCTCTATTTCCACGAGGTAGAGGTAAAACTTGCGTACACTCTACCCTCTCGAGATGTATGTTGTTGTTGTAGTTGTAGTTCTTTCTTTGATCTTGAATCGAGGATCTTTTGGAAACAGTCTCTCTATCTCCATGAGGTAGGGGTAAGATCTGTGTACACTCTCGAGATGTGTTTGTTGTTGTTGTTGTTTGTTTGTTTGGCTTAATGGAATTATCCAACAAATTTGCAGGTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTAC</genome_strand>
        <mrna_strand>TCATTTGAAGAAAAAAA-AGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATG-AAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT....................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206331" ref_strand="+" ref_description="SGN-E206331 [cLEC-23-K22]">
      <seq>aatgaagtcgataagatgacaaggaagaattcgataaatttaaggaactgtgatccaaagaaactgatgttagagaccacattatcattcaagaatctggttcaagacttagatatatcagaatggaacgaaaaaaagacgagagcaacagtttcattacccgagccttcgattctgttttctccacgacctgttagtgagcttgatgctgctgctgttaagcttcagaaagtgtataagagttataggacaagaagaaatcttgcagattgtgctgttgtggttgaagaactatggtggaaggctttggatttcgcagctctcaaacggagttctgtttcgttcttcaacgtggagaaaccggaaactgctgtatcgcggtgggctagagcacgtacacgagctgccaaagttggtaaaggattgtcaaaagatgaaaaagctcagaaacttgctctgcagcattggctagaagctattgatccacgacaccggtatggtcacaacttacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="-" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="17434" stop="15625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17134" g_stop="16839" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16838" i_stop="16244" i_length="595">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16243" g_stop="16062" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="477" r_length="181" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16061" i_stop="15962" i_length="100">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15961" g_stop="15925" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="514" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="-" ref_id="SGN-E206331" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17134" e_stop="16839"/>
          <exon e_start="16243" e_stop="16062"/>
          <exon e_start="15961" e_stop="15925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATGGTATGTCGACTTAAAATCGAATCTTGATTTAATGTCTCTATTGTATTGTGTTGTTCGGTTTTTTTATAGACCTAATTGTGGGATTACACGGAATATGTTGTCGTTGTGTTGTCTGGTATATATGGTCTTTAACTTTTTTGAAAAAAAAATTGAGTCTTGATTTGTAATGTCTCTGTTGTATTGTCTGGTTTATGGGGTCTTAACTTATTTCACAAAATCGAATCTTGATTTAATGTGTCTTCTATTGTATTGTTCGTTTTTTCCTGACCCAATTTGTGGGATTACACTGGATATGTTGTTGTTGTAATGTTCGGTTTATGGGGTCTTAAACTTTTTTGAAAAACTGAATCTTGATTTGTAATGTCTCTGTTGTATCTGGTTTATGGGGTCTTGACATTTTTGAAAAATCGAATCTTGATATAATGTGCCTATTGTATTGTCCGATTTTTCAGACCCCACGTATGGGATTACACTGAATATGTTGTTGTTGTATTGTCTCGTTTTACCAGATCCCACTTGTGGGATTACACTGGATATGTTGTTGTTGTTGTATTGTCGGTGTATTGAAGTGGTTGTGTTATATATGTATGTATAGGTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCTGTAAGTTCTTGAAATTTTTTTCGAAATCTTGAATTATTTCAGTCAAAGGAGTTCCGATGATCACGAAACTGATTGTTTATATCTTCTGATGTTGGTCTAGATTGATCCACGACACCGGTATGGTCACAACTTACACT</genome_strand>
        <mrna_strand>AATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATG-AAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT....................................................................................................ATTGATCCACGACACCGGTATGGTCACAACTTACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310366" ref_strand="+" ref_description="SGN-E310366 [cTOA-1-M12]">
      <seq>tcaaataagtaacgttcatgagatggatgttattacaggtaaaggggaattaatgacttgctccaaagatatgaattcagaattgttttttggagttttaggaggtttgggacagtttggaataataacaagagcaagaattgtcttggataaagcaccaacaagagtgaaatgggtgagaatgttatatgatgatttctcaaaattcacaaaagatcaagaacatcttatttcaattcataataatggattggattatgttgaaggctctctaatgatggagcaaagctctctaaataattggagatcttcattttattcaccttccaatcaaaccaaaattgcttcattattatccaaaaataaaatcatgtattgcttggaaatagtgaagtactatgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="21658" stop="23006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21975" g_stop="22102" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="166" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22103" i_stop="22466" i_length="364">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22467" g_stop="22706" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="406" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E310366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21975" e_stop="22102"/>
          <exon e_start="22467" e_stop="22706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGAGTAAGTACGATGATATTTGACTGAACACGAAATTTATGAAGAAAAAAAAAGATTTTTTAAAATCGGTGAATTCTAGTCACCATTTTTATGTATGGTGTTTACTTGTATGTTTTCTGGATACATCTGATATATATATATATACTGCTTTCGGATAACAACTAAGAGATCTATTCGAGGAACCTAGCCTCTAAATAAACACACTTATCTAAGTTAAAAATTGTTTCTAAGTATTAATATGCTATTTTTCTCGAAACATATTAAAGAATAAAAAGTGTTATATATATAAACAGAACAAATAAATATTAGTTTAAACTTCAATTCTTACCTATGCAAATGTATAATTATGAATTTTTTTTTCTTGTAGGTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGAC</genome_strand>
        <mrna_strand>GTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA............................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391765" ref_strand="+" ref_description="SGN-E391765 [TUS-24-K2]">
      <seq>tttggtacagtttggaataataacaagagcaagaattgtcttggataaagcaccaacaagagtgaaatgggtgagaatgttatatgatgatttctcaaaattcacaaaagatcaagaacatcttatttcaattcataataatggattggattatgttgaaggctctctaatgatggagcaaagctctctaaataattggagatcttcattttattcaccttccaatcaaaccaaaattgcttcattattatccaaaaataaaatcatgtattgcttggaaatagtgaagtactatgatgaccaaaatgctaatactattgataaggagttgaagaagttggtaaaaggattgaagtatgtaggtggatttatgttcaagaaagatgtgagttttgtggaatttttgaatagagttagaagtggggaattagagttacaatcaaaaggaatgtgggatgttccacatccatggcccaatttgtttgtaccaaagtcttctatcatgcattttaatgctgctgtttttgtggacataatcctcagacaaaacaagacaaatggacccatacttgtctaccccaacagtaagaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="21742" stop="23500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22042" g_stop="22102" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22103" i_stop="22466" i_length="364">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22467" g_stop="22730" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="323" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22731" i_stop="22927" i_length="197">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22928" g_stop="23198" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="594" r_length="271" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E391765" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22042" e_stop="22102"/>
          <exon e_start="22467" e_stop="22730"/>
          <exon e_start="22928" e_stop="23198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGAGTAAGTACGATGATATTTGACTGAACACGAAATTTATGAAGAAAAAAAAAGATTTTTTAAAATCGGTGAATTCTAGTCACCATTTTTATGTATGGTGTTTACTTGTATGTTTTCTGGATACATCTGATATATATATATATACTGCTTTCGGATAACAACTAAGAGATCTATTCGAGGAACCTAGCCTCTAAATAAACACACTTATCTAAGTTAAAAATTGTTTCTAAGTATTAATATGCTATTTTTCTCGAAACATATTAAAGAATAAAAAGTGTTATATATATAAACAGAACAAATAAATATTAGTTTAAACTTCAATTCTTACCTATGCAAATGTATAATTATGAATTTTTTTTTCTTGTAGGTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGATAAGGTATGTATTTCTCAAATTTACGTGATTCACTTTTTTATACTCATATATATATATATTCAGTCAAAGTGCATTATATGCGTTGATTTTGAAATTGTCAATGTATTTTAACATGTTATTTTACTAAAGAGGTTCAATATCTTTTATATATATATAAGATTGATTTTTATATATACGTTGTAATTTTTTAACGATTGTAGAGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG</genome_strand>
        <mrna_strand>TTTGGTACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA............................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGAT-A-.....................................................................................................................................................................................................AGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCCCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCCAACAGTAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246753" ref_strand="+" ref_description="SGN-E246753 [cLEF-45-B14]">
      <seq>ttggtacagtttggaataataacaagagcaagaattgtcttggataaagcaccaacaagagtgaaatgggtgagaatgttatatgatgatttctcaaaattcacaaaagatcaagaacatcttatttcaattcataataatggattggattatgttgaaggctctctaatgatggagcaaagctctctaaataattggagatcttcattttattcaccttccaatcaaaccaaaattgcttcattattatccaaaaataaaatcatgtattgcttggaaatagtgaagttctataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="21743" stop="23002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22043" g_stop="22102" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22103" i_stop="22466" i_length="364">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22467" g_stop="22704" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="298" r_length="238" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E246753" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22043" e_stop="22102"/>
          <exon e_start="22467" e_stop="22704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGAGTAAGTACGATGATATTTGACTGAACACGAAATTTATGAAGAAAAAAAAAGATTTTTTAAAATCGGTGAATTCTAGTCACCATTTTTATGTATGGTGTTTACTTGTATGTTTTCTGGATACATCTGATATATATATATATACTGCTTTCGGATAACAACTAAGAGATCTATTCGAGGAACCTAGCCTCTAAATAAACACACTTATCTAAGTTAAAAATTGTTTCTAAGTATTAATATGCTATTTTTCTCGAAACATATTAAAGAATAAAAAGTGTTATATATATAAACAGAACAAATAAATATTAGTTTAAACTTCAATTCTTACCTATGCAAATGTATAATTATGAATTTTTTTTTCTTGTAGGTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATG</genome_strand>
        <mrna_strand>TTGGTACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA............................................................................................................................................................................................................................................................................................................................................................................GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTTCTATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349292" ref_strand="+" ref_description="SGN-E349292 [cTOS-2-N10]">
      <seq>agggatgtgggatgttccacatccatggctcaatttgtttgtacccaagtcatctatcctgcattttaatgctgctgtttttgtggacatcatcctcagacaaaacaagacaactggacccatacttgtctacccaacaagtcggaaaagatgggatgataggatgtcagccacgataccagaagaggaaacattttattgtgtgggatttttacattcttcaagtggatataacgaatgcaaaattttggatgatcaaaatgaagaaatattagattattgtgataaagttggcctcaacgtaaagcaatatcttccacattacaagacaaaagaggaatggatcaagcattttggtaaaaaatggaatatttttcaacaaagaaaagaactatttgatcccaagatgattctatcaccgggacaaagaatttttaattagcttcttttcaccaataaatggtaggatataagcatagggagtaaaagataggcatatatctcgtaaaatcagtcaagtagataaaaattgactcaaacatcagagtcattaaaaacaagcatgggtagaaaggggagggggtgtactagttgtattgagctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22749" stop="24639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23049" g_stop="23198" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23199" i_stop="24042" i_length="844">
            <donor d_prob="0.896" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24043" g_stop="24440" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="549" r_length="399" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E349292" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23049" e_stop="23198"/>
          <exon e_start="24043" e_stop="24440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAGGTACTCACAAAAACTATCATTTCACCCCCACCCCACCCCCTTAGGTAAGTAATATATAGTTATAATATACTATAATCTCCGTCAATTTTTAGTTGTTATAATTTTCCTTTTTTAGAGTTAAGTAATAATAATTTTGATTAATATTTCACGACGTGTATTTTTTTTCATCATATTGATATGCAGATAGAATTTTATAGTACTTTTCGTATAGTTTTTGCATATCTATATTTTTTGTTTTAAATATCGAGTTAATGTAAGAAAAAGAGTGAAACTGACTTTCGAAAAGAGCAAGGTGACAAAATGGACATAGGGAATAGCACATCTTTTGTCTCAATTTATGTGATGTTTGTTCGATTTGAATTTTGATACAGAGTTTAAGAGAAAAAAAATGTAAGACTTTTGAAACTTCAATCTGAATTTAATTATAGATGTTTGTATGGTTATAAATTATCTGATTAAAGATAAAAATAAGCGTTTTAAAGTTAACTTGTTACTAAATATAGATATATCAATCATTATTTTTAGATTGCTTAATGTAAAAAAAGTGTGTTACATATATTATATTGAATATGAGAGAGTAGTATCGAGTTTAATATATATATATATATATATATATATATATATATATATATTGGGAGAATTATTATAAAATTTAAGAGAGTTCAGTAAAACTCAATAACTTTATTCTTTAGCTTTATATTTATACTAAGAAGTTCAACTAATATATATATATATATAATATTTCTCTTTGTTATATTTTTAAGATTATACATGATATCTTATTGAGTGATTTAATATTATAAAAAAATATTATTTTTATTTATTTATTTTTGAAAATATGCAGATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAG---GTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGAT-GACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATC</genome_strand>
        <mrna_strand>AGGGATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCCAAGTCATCTATCCTGCATTTTAATGCTGCTGTTTTTGTGGACATCATCCTCAGACAAAACAAGACAACTGGACCCATACTTGTCTACCCAACAAGTCGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATGATAGGATGTCAGCCACGATACCAGAAGAGGAAACATTTTATTGTGTGGGATTTTTACATTCTTCAAGTGGATATAACGAATGCAAAATTTTGGATGATCAAAATGAAGAAATATTAGATTATTGTGATAAAGTTGGCCTCAACGTAAAGCAATATCTTCCACATTACAAGACAAAAGAGGAATGGATCAAGCATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGAACTATTTGATCCCAAGATGATTCTATCACCGGGACAAAGAATTTTTAATTAGCTTCTTTTCACCAATAAATGGTAGGATATAAGCATAGGGA-G-TAAAAGATAGGCATATATCTCGTAAAATCAG-TCAAGTAGATAAAAATTGACTCAAACATCAGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314932" ref_strand="+" ref_description="SGN-E314932 [cTOA-31-O10]">
      <seq>tttgtttgtaccaaagtcttctatcatgcattttaatgctgctgtttttgtggacataatcctcagacaaaacaagacaaatggacccatacttgtctacccaacaagtaggaaaagatgggatgataggatgtcagcaataataccagaagaagaaacattttattgtgtgggacttttacattcttcaagtggatataatgaatgcaaaattttggataatcaaaatgaagaaatattaaattattgtgataaagttggcctcaatataaagcaatatcttccacattacaagacaaaagaggattggatcaaacattttggtanaaaatggaatatttttcaacaaagaaaagatctatttgatccaaagatgattctatcaccaggacaaagaatttttaattaggttttcatcaataaatagtacgatataatgatagggatgataaaagatgacaaatatttcgtgaaattagttgaaatgtgtaaaagttggctcgaacatcagaatcgtcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22782" stop="24747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23082" g_stop="23198" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23199" i_stop="24042" i_length="844">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24043" g_stop="24447" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="522" r_length="405" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E314932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23082" e_stop="23198"/>
          <exon e_start="24043" e_stop="24447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAGGTACTCACAAAAACTATCATTTCACCCCCACCCCACCCCCTTAGGTAAGTAATATATAGTTATAATATACTATAATCTCCGTCAATTTTTAGTTGTTATAATTTTCCTTTTTTAGAGTTAAGTAATAATAATTTTGATTAATATTTCACGACGTGTATTTTTTTTCATCATATTGATATGCAGATAGAATTTTATAGTACTTTTCGTATAGTTTTTGCATATCTATATTTTTTGTTTTAAATATCGAGTTAATGTAAGAAAAAGAGTGAAACTGACTTTCGAAAAGAGCAAGGTGACAAAATGGACATAGGGAATAGCACATCTTTTGTCTCAATTTATGTGATGTTTGTTCGATTTGAATTTTGATACAGAGTTTAAGAGAAAAAAAATGTAAGACTTTTGAAACTTCAATCTGAATTTAATTATAGATGTTTGTATGGTTATAAATTATCTGATTAAAGATAAAAATAAGCGTTTTAAAGTTAACTTGTTACTAAATATAGATATATCAATCATTATTTTTAGATTGCTTAATGTAAAAAAAGTGTGTTACATATATTATATTGAATATGAGAGAGTAGTATCGAGTTTAATATATATATATATATATATATATATATATATATATATATTGGGAGAATTATTATAAAATTTAAGAGAGTTCAGTAAAACTCAATAACTTTATTCTTTAGCTTTATATTTATACTAAGAAGTTCAACTAATATATATATATATATAATATTTCTCTTTGTTATATTTTTAAGATTATACATGATATCTTATTGAGTGATTTAATATTATAAAAAAATATTATTTTTATTTATTTATTTTTGAAAATATGCAGATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTAT</genome_strand>
        <mrna_strand>TTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTANAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397817" ref_strand="+" ref_description="SGN-E397817 [TUS-24-K2](-)">
      <seq>aacaagacaaatggacccatacttgtttacccaacaagtaggaaaagatgggatgataggatgtcagcaataataccagaagaagaaacattttattgtgtgggacttttacattcttcaagtggatataatgaatgcaaaattttggataatcaaaatgaagaaatattaaattattgtgataaagttggcctcaatataaagcaatatcttccacattacaagacaaaagaggattggatcaaacattttggtaaaaaatggaatatttttcaacaaagaaaagatttatttgatccaaagatgattctatcaccaggacaaagaatttttaattaggttttcatcaataaatagtacgatataatgatagggatgataaaagatgacaaatatttcgtgaaattagttgaaatgtgtaaaagttggctcgaacatcagaatcgtcctataaggctatagggtggtaaaaggtgacagatatttcgtgaaatcagttaaactatgtaaaagctgattcgaacatcagaatcgttaagggtaggagggagggttgtaagtttttaattgttggagttgatgtatttttattttattttattttggtgtgttagaaagataaattagatgatgtaaagcttttttagctaccatttaattataataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="22852" stop="24961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23152" g_stop="23198" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23199" i_stop="24042" i_length="844">
            <donor d_prob="0.896" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24043" g_stop="24660" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="665" r_length="618" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="687"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E397817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23152" e_stop="23198"/>
          <exon e_start="24043" e_stop="24660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAGGTACTCACAAAAACTATCATTTCACCCCCACCCCACCCCCTTAGGTAAGTAATATATAGTTATAATATACTATAATCTCCGTCAATTTTTAGTTGTTATAATTTTCCTTTTTTAGAGTTAAGTAATAATAATTTTGATTAATATTTCACGACGTGTATTTTTTTTCATCATATTGATATGCAGATAGAATTTTATAGTACTTTTCGTATAGTTTTTGCATATCTATATTTTTTGTTTTAAATATCGAGTTAATGTAAGAAAAAGAGTGAAACTGACTTTCGAAAAGAGCAAGGTGACAAAATGGACATAGGGAATAGCACATCTTTTGTCTCAATTTATGTGATGTTTGTTCGATTTGAATTTTGATACAGAGTTTAAGAGAAAAAAAATGTAAGACTTTTGAAACTTCAATCTGAATTTAATTATAGATGTTTGTATGGTTATAAATTATCTGATTAAAGATAAAAATAAGCGTTTTAAAGTTAACTTGTTACTAAATATAGATATATCAATCATTATTTTTAGATTGCTTAATGTAAAAAAAGTGTGTTACATATATTATATTGAATATGAGAGAGTAGTATCGAGTTTAATATATATATATATATATATATATATATATATATATATATTGGGAGAATTATTATAAAATTTAAGAGAGTTCAGTAAAACTCAATAACTTTATTCTTTAGCTTTATATTTATACTAAGAAGTTCAACTAATATATATATATATATAATATTTCTCTTTGTTATATTTTTAAGATTATACATGATATCTTATTGAGTGATTTAATATTATAAAAAAATATTATTTTTATTTATTTATTTTTGAAAATATGCAGATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAAT</genome_strand>
        <mrna_strand>AACAAGACAAATGGACCCATACTTGTTTACCCAACAAGTAGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATTTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317824" ref_strand="+" ref_description="SGN-E317824 [cTOA-30-F5]">
      <seq>aaaaagctttacatcatctaatttatctttctaacacaccaaaataaaataaaataaaaatacatcaactccaacaattaaaaacttacaaccctccctcctacccttaacgattctgatgttcgaatcagcttttacatagtttaactgatttcacgaaatatctgtcaccttttaccaccctatagccttataggacgattctgatgttcgagccaacttttacacatttcaactaatttcacgaaatatttgtcatcttttatcatccctatcattatatcgtactatttattgatgaaaacctaattaaaaattctttgtcctggtgatagaatcatctttggatcaaatagatcttttctttgttgaaaaatattccattttttaccaaaatgtttgatccaatcctcttttgtcttgtaatgtggaagatattgctttatattgaggccaactttatcacaataatttaatatttcttcattttgattatccaaaattttgcattcattatatccacttgaagaatgtaaaagtcccacacaataaaatgtttcttcttctggtattattgctgacatcctatcatcccatcttttcctacttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="-" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="24939" stop="23741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24639" g_stop="24041" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="-" ref_id="SGN-E317824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24639" e_stop="24041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTTACATCATCTAATTTATCTTTCTAACACACCAAAATAAAATAAAATAAAAATACATCAACTCCAACAATTAAAAACTTACAACCCTCCCTCCTACCCTTAACGATTCTGATGTTCGAATCAGCTTTTACATAGTTTAACTGATTTCACGAAATATCTGTCACCTTTTACCACCCTATAGCCTTATAGGACGATTCTGATGTTCGAGCCAACTTTTACACATTTCAACTAATTTCACGAAATATTTGTCATCTTTTATCATCCCTATCATTATATCGTACTATTTATTGATGAAAACCTAATTAAAAATTCTTTGTCCTGGTGATAGAATCATCTTTGGATCAAATAGATCTTTTCTTTGTTGAAAAATATTCCATTTTTTACCAAAATGTTTGATCCAATCCTCTTTTGTCTTGTAATGTGGAAGATATTGCTTTATATTGAGGCCAACTTTATCACAATAATTTAATATTTCTTCATTTTGATTATCCAAAATTTTGCATTCATTATATCCACTTGAAGAATGTAAAAGTCCCACACAATAAAATGTTTCTTCTTCTGGTATTATTGCTGACATCCTATCATCCCATCT</genome_strand>
        <mrna_strand>AAAAAGCTTTACATCATCTAATTTATCTTTCTAACACACCAAAATAAAATAAAATAAAAATACATCAACTCCAACAATTAAAAACTTACAACCCTCCCTCCTACCCTTAACGATTCTGATGTTCGAATCAGCTTTTACATAGTTTAACTGATTTCACGAAATATCTGTCACCTTTTACCACCCTATAGCCTTATAGGACGATTCTGATGTTCGAGCCAACTTTTACACATTTCAACTAATTTCACGAAATATTTGTCATCTTTTATCATCCCTATCATTATATCGTACTATTTATTGATGAAAACCTAATTAAAAATTCTTTGTCCTGGTGATAGAATCATCTTTGGATCAAATAGATCTTTTCTTTGTTGAAAAATATTCCATTTTTTACCAAAATGTTTGATCCAATCCTCTTTTGTCTTGTAATGTGGAAGATATTGCTTTATATTGAGGCCAACTTTATCACAATAATTTAATATTTCTTCATTTTGATTATCCAAAATTTTGCATTCATTATATCCACTTGAAGAATGTAAAAGTCCCACACAATAAAATGTTTCTTCTTCTGGTATTATTGCTGACATCCTATCATCCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341509" ref_strand="-" ref_description="SGN-E341509 [cTOE-23-N24]">
      <seq>aaagaatttttaattaggttttcatcaataaatagtgcgatataatgatagggatgataaaagatgacaaatatttcgtgaaattagttgaaatgtgtaaaagttggctcgaacatcagaatcgtcctataaggctatagggtggtaaaaggtgacagatatttcgtgaaatcagttaaactatgtaaaagctgattcgaacatcagaatcgttaagggtaggagggagggttgtaagtttttaattgttggagttgatgcatttttattttattttattttggtgtgttagaaagataaattagatgatgtaaagcttttttagctaccatttaattataatatgtgaagtttgttttttatanacccccaaaaaaaaaaaacaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="24018" stop="24981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24318" g_stop="24682" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="389"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E341509" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341509" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24318" e_stop="24682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAA</genome_strand>
        <mrna_strand>AAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTGCGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGCATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745179" ref_strand="+" ref_description="SGN-E745179 [GI|47105949]">
      <seq>gtcagctatggctcctctcaaaattctcctctgtggtgatgtactcggccgtctcaatcatctattcaaacgcgtttcttcggtgaacaaggcagctggtccatttgatgctcttctttgcgtaggccaattttttcctgattcagttgaggggattgatgaattcaatggctacattgaggggcgttccaagattccgataccgacctatttcattggtgattatggtgcagggtccccaaaaatattgtcagaagcattaaaggacccgagtaacaaagggtttaagatggagggtttaagagtctgtgacaatttgtactggttgaaaggaagtgggaagtttagccttaatgggttatctgtggcatacttatctggtaggcgaactccaagtggaactcaattcggaacatatagtcaagatgatgttgatgctttgagggctttagcagaggatccagtaacagtagacatctttcttactaatgagtggcccagtggagtaacaaatggaacgacatcaaaagctcctgtagaaatttctgattcatctgggagtgatcccacagtgtcagagttggtaactgagattaagcctcggtatcatgttgcaggaactgtgggtgtatactttgatcgtgaaccatatgctaacgttgatgctctacacgtaactcgctttttgggcttagctcctgttggaaacaaagataaacagaaattcattcatgcgatatcccccactccagcatcaacaatgtcgaaaactgagcttagtgcaaagccaccaaacgctacttcatgtccatatacaaatgttgacaaagcagcccaacccgatggagccacaaagaggcccggtgatggtacttctgagtcacagtattggaggtatgatgtatccaagaaaaagcagaaacatggagatggtggtggtgacagactctgctttaaatttgcctcttctggctcttgtccaagaggaaaccagtgccattttagacatgatgaagaggcttcagaacaatactcaagaggtgtgtgttttgactttctcaacaaggggaaatgtgaaaaaggtcctgattgcaacttcaagcacagcttgcaggaagaaggtgacagatcagcatctgggacagcaagctctaataggtcaagagaatgctggttttgtttgtcaagcccaaatgttgagtcacatctcatcactagtgtcggagaatattactactgtgcacttgctaaaggacctttaacacctgatcatgtgctgattatgcctattgaacacacncccaatacgttatctctgccactggaatgtgaaaaggaactggaacgacttcaaagcagcctcaaagcttacttcaaaaagcaagggaaggaagcagttttctttgagttcgtgcgaggaagtcatgccaatctccaggttgttcctattccctcgtccagggcatctgcggttcgagatatttttaacttggctgctgacaaattgggatttaagctttctatggttaaagaaggaagacaagcgttgcggacacagttcgacagaagttgcagcttattttatgttgaagttcctggaggtgatattttgtcacatgttattgaggagaatgaaaaattcccagctcaatttggtcgtgaggttttagcaggcttgttgaatatagcagatagagctgattggagaaattgtaaggacgctgttgtaaccgcctaaccgggcagcaacaacattgctgcaatttccatgtatgtaaccccatgtccagttaggctattgaggtagttttgttcatgtatgagcttgtgagtttgtttcaactatttgagataatgtaatacacaatagtgacagcttcttcttttttttttttcctgaagcaattgtaactttattgtccactgaattgttttttgtttgttaaaaatatttggatcctttatgaattacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="26299" stop="35177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26598" g_stop="26679" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26680" i_stop="27941" i_length="1262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27942" g_stop="28215" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="356" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28216" i_stop="29758" i_length="1543">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29759" g_stop="29888" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="486" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29889" i_stop="29985" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29986" g_stop="30102" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="603" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30103" i_stop="30846" i_length="744">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30847" g_stop="30964" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="721" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30965" i_stop="31533" i_length="569">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31534" g_stop="31970" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="1158" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31971" i_stop="32093" i_length="123">
            <donor d_prob="0.533" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32094" g_stop="32373" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1159" r_stop="1438" r_length="280" r_score="0.996"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32374" i_stop="33192" i_length="819">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33193" g_stop="33286" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1439" r_stop="1532" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="33287" i_stop="33991" i_length="705">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.697" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33992" g_stop="34122" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1533" r_stop="1663" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34123" i_stop="34285" i_length="163">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="34286" g_stop="34339" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1664" r_stop="1717" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="34340" i_stop="34620" i_length="281">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="34621" g_stop="34877" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1718" r_stop="1974" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1975" polyA_stop="1986"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E745179" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1974</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26598" e_stop="26679"/>
          <exon e_start="27942" e_stop="28215"/>
          <exon e_start="29759" e_stop="29888"/>
          <exon e_start="29986" e_stop="30102"/>
          <exon e_start="30847" e_stop="30964"/>
          <exon e_start="31534" e_stop="31970"/>
          <exon e_start="32094" e_stop="32373"/>
          <exon e_start="33193" e_stop="33286"/>
          <exon e_start="33992" e_stop="34122"/>
          <exon e_start="34286" e_stop="34339"/>
          <exon e_start="34621" e_stop="34877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCTATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCGGTTCGTCTTCTTCTTTAATTTCATATATATCATGTTTGTATTCATATAATAGATAGATTACAGAGGCGGATGCACAGTATTGGTACCGAGTTCATTTGAATCCAATACTTTTGATACGTAGAAGTAATTTATGTGTAAAATCCACGAAAAATGCTTCAAAGAGAATACATAACTTTGAAAATACTGTGGGAGTAATGCTAAGCACCTTTAAGAGTATCCATAAAGTTTAAATTGTGCTCTAGATAGTTTGCTGACTTTAAGTTCTGGATTTGGTATAGTGTAAATATGAATTACTTAGTTTAGAGCCGAGATATGTTGTGATTACTTAGTTTAGAGCTGAGTTTGTGGAGGTTGTGTGATTTCAGGTTAGAGATAGAAGGTTAGTAGATAGTGTTGATACTTAGAAGCTATTGGAAAATGTCAATTCTAGTATACTTAGTTTCAGTTTATTATAGTTTGTACATTGTATATATATATGGAACTTAGCATATAGTAAGTACACATGGGTCTTTACAGATGAAATGAAAGGTTCTTTGTCTCTCCCCATTCCACTGACTCCATGACAAGATATCTCGATTTCTCATTTGAATCTGAAGTGTAACAGATTGTAGTGTCTTATTTCGCAATCCATCCATCCATCCATCCTATTAGTTGTAGTTTCTTGCTCTTCTATGGATAAGAGGTGGGGAAGACACAAAGTAGGCTAGAAGGTTAGTAGATAGTAGTGTGTTGTCAAGCTATCTGTCCATCTTAGAAGTCGTAGTTTCTTTCCCTTGGATAGATAGGAGGTCGTGGAGAACACAAGTGAGATATAGTAGTGTGTTGTCAAGCTAGCCGTCCATTTTAGTAGTCGTAGCTTCTTGCCCTTTGATAGATAGAAGGTCATGGAGGAACAATTAGGCTAGAAGGTTAGTATATAGAAGTGTGTTGTCTCGCTATCTGTCCATCCTAGTAGTCGTAGTTTCTAGCCCTTCGATTCCTGATGCTTTCTGTTTTTTTTTTGTGTATATTGATGACCATATTATTTTGTCGTAGTAACTGCTCAGTATGCTTTGTTATGCTTTCACTTACATTACTTCTCTTTGGATTGCTTGGGACTGTTCATTTCTCGAGTCGAGGGTCTATCAGAACCAACCTCTCTACTTCTGAGGTAGGGGTAAGGTCTACATGCATTCTACCCTCCCCAGACTCCACCTTGTGGGACTACATTGGGTATGTTGTTGTTGTTGTTGTAATTTAGAGCTGAACTTGAACTCTTTCAGGTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATGGTAAGCACTAACCAGCACCTCGTTTTTCTTTTTATTCCAATTTGCTTAATGAAAGTGAAAGACTTAGTGTACGGACTGAACAGGCTGCTTAGAAGTTTGTGTCTGCATCCACTTCTTTTTCTTCATAATTGTGGTGTCCTGGCTAGCTTGAGCTCTTTCGCGGAAAAAAACACTCCCATTTTTCCCTCGGCTAGAATTTGAACCCGAGACCTCATGGTTCAGCCTACTTTGTTAACCACTAGGCCACACCCTGTGGTGTTTTTTGCATCTACTCTACTAGGGGTGGTGTGTGTATGTATATTACATATTTTTGTATAGTTGGAAATGTCTATTGACTGGACAAGTATGCACACCTCTACTATTTCACCTGGTGCCTGCTCCTGCCACTAACGCAATTTCACATAGCTTTACCCAAGGCTTAGACCGGTGGAATGAAATGACCTTGCTCTTGTTTCTTCTGGGATATATACCCTGGTCTTCATATGGTCTTTTCCGGCTTCATTATAGTTAAGCCTCATTTATACATGCTTAAAAGATGTATGTTATAGAATGTTTGTATTTGTTGCTACAAAAGAATGGTGGCTTGTACACACACGCACTCACAATATTTAATCCGGCTTGGTGGATAGGGATAGATAGGGGAGCATTTGGATAATATTTAAAGTTGTTGGGCAAAGCAGATGGGTGCACCTTTTACAAAATGACTTTGTTAAATGCAGTTTATCATTTCCTTGTTCAAACTTGTACTGTTTGGTCTAGCAGTTCACACATGTAGCAAGAATGAAATCTTGGCGCAGATATATTGAAAGCTGTTAAGTCTTTAAAACTATTAGCTAAAAATTCTCTATAGAAGTTGGTAAAAAAAAGGGTTGTATTGTCTCCTACCTCTCTGTGGTATTGAACAAAAGCCTATGTCATTGCTTACAGAAGCCAAATGGACTATATGTTGCTAAATTATTATTCCAATGTTGTATTGAATTAAAGATAGTAGGCAGTTGCACCATTTCCAAGTTATACATTGTGAGATGCTGATGTCTATGATTTGAAAAATGGAACTTTTCATGAGAGTATCTAAGCACCGTGCAATTTTACATATCCAACAGAAAATAAAATGTGAGCACATCCAAACATCACACAATGTATCTTAATTTCGTGGAGTTGTGTACCTTTTTTGCTTAATTGGCTAGTTTGTTTCAATTCATTCTGGATTGAGGCGCAGTTGGTTGTCCAATTGATGTTATTGGTTATTATTTTCGTATTCAATGTTATATTGTAATAACTGCACCCAGTTCACGATAACCCTGGGGTTTACCCTAATTTTGGAAAGTTCATCCTATTGATTGGTTAGTTTGCTTTGTGAGAATAGAATCTCACCAAACAGGGTGTGTCTAAGCTCATGTTTTTGGAATGGTGAGACTGAAAGAGATTTGGATTTCATATTATGTCTGCGCATCGAATTACAGTTTTCTTATATGGAGGTGCATGACTCAACAATTATATTTTTTGTTGGATATGATAGCTGATATACTGTACTCATGTTTAGGGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTACATATCCTTTGATTTTATATTGATCTTCGTCATTTTCTTCACCCCCCCTATTGCAAGTACTCTATACAATCTCTTTGATTTCCTTAATAAAAAAACACTAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCGGTGAGTGATCATATTTTTCAAAATGCAGTTCACTTGTTGAGTTGGTGTCATGACTCATGGGCAACCAAGTCCTTTGCTCTTGAACTTCATTTGAACATACCTTCTCGACCTTTGGAGAAGAAAATTTGAACTCAAAATTTGGAGCCAACAACTATGTGGAATTTTTCATTTTAATTTTGTACTACAAAATTAATGTTTGTACATCTATATGCTTCCACTCGACGTCTTTATATTCAGTTTATTTTTCTTATTTATTAATAGTGCAAGCTTCATCACACCTCGATTGGACTGCAGACTGCCATTTCATAGTTAATTTGAGCTGATATGTGCCACTGATCTTCTTTATCTGGTGGTTGAACTGGTAATCTTTTACAAGAGTTCCATTTCGCAGTGGAAATGTCTGTCTTTGATATACTTAGGATTCACCTAAAATAAAATTAAGCAGTAGGAATTTGCATTTAGCACCGCTTAATGGGTGTCAATCTGAAAAATTAAGTAAAATTTCAATAAATATATTCTTGCTTTCAGAGAATCCACAATGTTCTGTTCATGTGAAGGAAGTATCTGTTCAAATGGCTATTTTGTAATCCTGCTATTTTAAAAGAAATGCTATTGAAATCAGGAACTTTCTGTTGCTTTCTAGTTCATTTTTCATTTTAACGAACCAGAACTGAAATTGTACTTTGTTGCCCAATAAATCCACAGATATGAATTTTTCCCTAGCTGAATTTGTTTTACTGGTAGGTATCATGTTGCAGGAACTGTGGGTGTATACTTTGATCGTGAACCATATGCTAACGTTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAGGTACTACAGCCGACATTTGAGTTAAATTTCCTGCTAGTATTTGTAAAAGTAGCATCTTAAGCAGTTCTATCACAAATCGAGAATGTTTAATCAAACATTATTCACTATCTCTAATTTCGGTGGCTGTCGCACTTTAACCCACACTTTCTCCTCACCTCCCTCCCCTCCCACACCACCACCACCAAAAAAATATGCCCCATAGTTATGGTTGAACATGAAACTTGTTAATAGTAATTATATATACTCAAAATGCCATAGAAACTCTTAAATCTATTCATTTTTGTAATGAAATTCTGATCTAGCTTTCAATTCTTGAAACACCATTATAAAATATAAAGTGAATTTGAGTGAAGCTAGAAATTTCCTGAACTGCACACTTCTTTTAAATGGCATACAAGTTTATAACTGAAATGAAAGACTTCTGCTGAAAAATGCAGAACATATCTTCTTAGCTAAGACTGCATCTATTTCTCGGTCTTTAAATGACAACTTCTCTCCACGTGATTTTATGTCTACCTCAGCCCTCTATATCATTTTGAATCCTCATTTTATGCATGAGTTCTTTGCAGAAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGGAGCCACAAAGAGGCCCGGTGATGGTACTTCTGAGTCACAGTATTGGAGGTATGATGTATCCAAGAAAAAGCAGAAACATGGAGATGGTGGTGGTGACAGACTCTGCTTTAAATTTGCCTCTTCTGGCTCTTGTCCAAGAGGAAACCAGTGCCATTTTAGACATGATGAAGAGGCTTCAGAACAATACTCAAGAGGTGTGTGTTTTGACTTTCTCAACAAGGGGAAATGTGAAAAAGGTCCTGATTGCAACTTCAAGCACAGCTTGCAGGAAGAAGGTGACAGATCAGCATCTGGGACAGCAAGCTCTAATAGGTTATCGAACTACTTGATTTTTCTTGATGACGTTGCAGTATCAATGTTTACTGGCTTGTGGGCCTTCATTAGTGCTCCCTTGCTTTTGTAGTAAGTTTTGTGGTAACTTTAACTGTTTTTCAGGTCAAGAGAATGCTGGTTTTGTTTGTCAAGCCCAAATGTTGAGTCACATCTCATCACTAGTGTCGGAGAATATTACTACTGTGCACTTGCTAAAGGACCTTTAACACCTGATCATGTGCTGATTATGCCTATTGAACACACACCCAATACGTTATCTCTGCCACTGGAATGTGAAAAGGAACTGGAACGACTTCAAAGCAGCCTCAAAGCTTACTTCAAAAAGCAAGGGAAGGAAGCAGTTTTCTTTGAGTTCGTGCGAGGAAGTCATGCCAATCTCCAGGTATGGAAAAATTGACATTCATGTATTGCTATGAATGTATTCCTATACTATACATATTATTTTAAAAAAGGGAAGAAAAAAAGGGTATGTCTCTACCACCATTCTGTTCTTAAAAATTGGCTTGTAAACATACTTAATTTACATGTTTTGTACTTGTGGAAAAAGGTTTTATGTAGCAGCTCCCACATGTATTGTTCTATTTGTGATCTCTAGCCTTAGAAACTCTGAATAAGCACAAAGCATCCTGACTACTGGGAATGATTAGAAAACCTTCCATAGAGAGCCATTATTTGATTTTTTTTTTCAGTATTCATATCTTCGTGAAAGAGTTGTCTGTGTTCATCACTCACAGTGAGGCATACCCCATGAAGGACAAACATTTGGCTAACAGGATTTATATTGAAATTACGAGTGAGATCAAATCAAAGAAATATGTAAGAATAAAATATTTGTGGAAAAAAAAATGTTCAATTTGTAGAAACTTGTTTAAACTTCAGTATGGTTTACCTAAACTGTGGTTGAGAAGAGAGATTCAAACAGGGATCAAACATGATTGGCACTCGTCATGCAGGGCTTACAATAAAGACATCCAAAAGGCAGAGCCTTAATTGCACTTTTTAGAAGTTAATATTTTGATTGTACACCTTGGATCAAACTGCAGCTGCCTCACCTTAATAGATCAATCTCCTTTTGTAACATTAATAATATTATGCAATTGTGTAATTGTCTCATGTCACAGTTCTTTATTCCATTAACTTTTCTTCTTTATTATTGCTTATTTACCATTATCTTAACCTCCACTCCTTGTGTCTACTGTAGGTTGTTCCTATTCCCTCGTCCAGGGCATCTGCGGTTCGAGATATTTTTAACTTGGCTGCTGACAAATTGGGATTTAAGCTTTCTATGGTTAAAGGTATGTTCACTTTATTGTATGAAGCCGTGGGGTCCTGAATCCCTGCCACATGCCCCAACCAAATAATAGAAAGAAAAATGGTACAGGTAGAAAAAATAATGTGGAAAAAAACAGCTCAGTTGTTATTCATGCCTCAGCTTTAGCTACTTGTCCTTATCCTTTGATTCCTGGTTATGTATACAGACTGAGATGAGTAGTTTCTTCAAATGTCCTTACGAGCATGGCACCTGCATAAAGTGTACCCTAGGAAGGTTTTTATTTCCACCACTGTCTTAATACCAAAACCAAGAAAAAGAAGAAAAAGAGACTACAAAACTGAATATCATTTTCTTGAGAAGCTTTGGATGTGAACAATTTCTTTTGATAAGTTACCATATTTATATATGCCCAGCACATTTGGGTACATACTCCTACATTATATAGACCTATCTAGCAAGTTCTACTCTACCGATAATTCTAACCATTGTTATACAGTAGCAGTACAGATGCTAAATTATAAACCTCTGATTTCCTCATTCAATTATTTTCTTGTTTAGTCTCTGCTAATTGGAAATGTGGGTAAGCATGGTTGTGGGGAAAACGTCATGGATTTGAATATACTCCATTGGTGCTTTCATTGTTTTGTCTTTTAACTATCACAGATTGGCTTGCGTGAGAGCAATTCAGTCTAAGAGCTGACATGTTGGTGCTTTCTTTTTACTGCAGAAGGAAGACAAGCGTTGCGGACACAGTTCGACAGAAGTTGCAGCTTATTTTATGTTGAAGTTCCTGGAGGTGATATTTTGTCACATGTTATTGAGGAGAATGAAAAATTCCCAGCTCAATTTGGTCGTGAGGTAAGATGAGTCCACCTTTATCTAGTAATGTATCATTTATAGCTAAAAATTCGACAGGTGATAAACGCTTAGTTTGCATCCTTTTTTTTTTAATGTAAAATATGTCTTAACAGCTATACTTCCGCTTAAGTAACAGACGTAACATTCCATGAACGTCCCACAGGTTTTAGCAGGCTTGTTGAATATAGCAGATAGAGCTGATTGGAGAAATTGTAAGGTTAGTAAAGAAGAAGAAACTAAAATGGCTGAGCGATTCAAGAACGGATTTCAAGAATATGATCCAAATCAATAGCATAGCCGAGAAATATGCAACACTATATATCGAGTTCTTTCTCTCGTGTTCTTCATTATATGCAACTTCAACATTTCCTTGAGGTTCTCTCTGCTCCTGGCTTCAATCTAACTGCAAGTATCTGCAAATTCTTTACATGCACGTATTCTTGTTATGCTTGAACAGTCACTATATCATTTTCTGAAAACATTGTTGTCGTTTAACAGGACGCTGTTGTAACCGCCTAACCGGGCAGCAACAACATTGCTGCAATTTCCATGTATGTAACCCCATGTCCAGTTAGGCTATTGAGGTAGTTTTGTTCATGTATGAGCTTGTGAGTTTGTTTCAACTATTTGAGATAATGTAATACACAATAGTGACAGCTTCTTCTTTTTTTTTTTTCCTGAAGCAATTGTAACTTTATTGTCCACTGAATTGTTTTTTGTTTGTTAAAAATATTTGGATCCTTTATGAATTACAA</genome_strand>
        <mrna_strand>GTCAGCTATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTAC.................................................................................................TAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATGTTGCAGGAACTGTGGGTGTATACTTTGATCGTGAACCATATGCTAACGTTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGGAGCCACAAAGAGGCCCGGTGATGGTACTTCTGAGTCACAGTATTGGAGGTATGATGTATCCAAGAAAAAGCAGAAACATGGAGATGGTGGTGGTGACAGACTCTGCTTTAAATTTGCCTCTTCTGGCTCTTGTCCAAGAGGAAACCAGTGCCATTTTAGACATGATGAAGAGGCTTCAGAACAATACTCAAGAGGTGTGTGTTTTGACTTTCTCAACAAGGGGAAATGTGAAAAAGGTCCTGATTGCAACTTCAAGCACAGCTTGCAGGAAGAAGGTGACAGATCAGCATCTGGGACAGCAAGCTCTAATAG...........................................................................................................................GTCAAGAGAATGCTGGTTTTGTTTGTCAAGCCCAAATGTTGAGTCACATCTCATCACTAGTGTCGGAGAATATTACTACTGTGCACTTGCTAAAGGACCTTTAACACCTGATCATGTGCTGATTATGCCTATTGAACACACWCCCAATACGTTATCTCTGCCACTGGAATGTGAAAAGGAACTGGAACGACTTCAAAGCAGCCTCAAAGCTTACTTCAAAAAGCAAGGGAAGGAAGCAGTTTTCTTTGAGTTCGTGCGAGGAAGTCATGCCAATCTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCTATTCCCTCGTCCAGGGCATCTGCGGTTCGAGATATTTTTAACTTGGCTGCTGACAAATTGGGATTTAAGCTTTCTATGGTTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGACAAGCGTTGCGGACACAGTTCGACAGAAGTTGCAGCTTATTTTATGTTGAAGTTCCTGGAGGTGATATTTTGTCACATGTTATTGAGGAGAATGAAAAATTCCCAGCTCAATTTGGTCGTGAG...................................................................................................................................................................GTTTTAGCAGGCTTGTTGAATATAGCAGATAGAGCTGATTGGAGAAATTGTAAG.........................................................................................................................................................................................................................................................................................GACGCTGTTGTAACCGCCTAACCGGGCAGCAACAACATTGCTGCAATTTCCATGTATGTAACCCCATGTCCAGTTAGGCTATTGAGGTAGTTTTGTTCATGTATGAGCTTGTGAGTTTGTTTCAACTATTTGAGATAATGTAATACACAATAGTGACAGCTTCTTCTTTTTTTTTTTTCCTGAAGCAATTGTAACTTTATTGTCCACTGAATTGTTTTTTGTTTGTTAAAAATATTTGGATCCTTTATGAATTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703090" ref_strand="+" ref_description="SGN-E703090 [FA20CB05]">
      <seq>atggctcctctcaaaattctcctctgtggtgatgtactcggccgtctcaatcatctattcaaacgcgtttcttcggtgaacaaggcagctggtccatttgatgctcttctttgcgtaggccaattttttcctgattcagttgaggggattgatgaattcaatggctacattgaggggcgttccaagattccgataccgacctatttcattggtgattatggtgcagggtccccaaaaatattgtcagaagcattaaaggacccgagtaacaaagggtttaagatggagggtttaagagtctgtgacaatttgtactggttgaaaggaagtgggaagtttagccttaatgggttatctgtggcatacttatctggtaggcgaactccaagtggaactcaattcggaacatatagtcaagatgatgttgatgctttgagggctttagcagaggatccagtaacagtagacatctttcttactaatgagtggcccagtggagtaacaaatggaacgacatcaaaagctcctgtagaaatttctgattcatctgggagtgatcccacagtgtcagagttggtaactgagattaagcctcggtatcatgttgcaggaactgtgggtgtatactttgatcgtgaaccatatgctaacgttgatgctctacacgtaactcgctttttgggcttagctcctgttggaaacaaagataaacagaaattcattcatgcgatatcccccactccagcatcaacaatgtcgaaaactgagcttagtgcaaagccaccaaacgctacttcatgtccatatacaaatgttgacaaagcagccccacccgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="26305" stop="31958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26605" g_stop="26679" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26680" i_stop="27941" i_length="1262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27942" g_stop="28215" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="349" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28216" i_stop="29758" i_length="1543">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29759" g_stop="29888" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="479" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29889" i_stop="29985" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29986" g_stop="30102" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="596" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30103" i_stop="30846" i_length="744">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30847" g_stop="30964" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="714" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30965" i_stop="31533" i_length="569">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31534" g_stop="31658" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="839" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E703090" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26605" e_stop="26679"/>
          <exon e_start="27942" e_stop="28215"/>
          <exon e_start="29759" e_stop="29888"/>
          <exon e_start="29986" e_stop="30102"/>
          <exon e_start="30847" e_stop="30964"/>
          <exon e_start="31534" e_stop="31658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCGGTTCGTCTTCTTCTTTAATTTCATATATATCATGTTTGTATTCATATAATAGATAGATTACAGAGGCGGATGCACAGTATTGGTACCGAGTTCATTTGAATCCAATACTTTTGATACGTAGAAGTAATTTATGTGTAAAATCCACGAAAAATGCTTCAAAGAGAATACATAACTTTGAAAATACTGTGGGAGTAATGCTAAGCACCTTTAAGAGTATCCATAAAGTTTAAATTGTGCTCTAGATAGTTTGCTGACTTTAAGTTCTGGATTTGGTATAGTGTAAATATGAATTACTTAGTTTAGAGCCGAGATATGTTGTGATTACTTAGTTTAGAGCTGAGTTTGTGGAGGTTGTGTGATTTCAGGTTAGAGATAGAAGGTTAGTAGATAGTGTTGATACTTAGAAGCTATTGGAAAATGTCAATTCTAGTATACTTAGTTTCAGTTTATTATAGTTTGTACATTGTATATATATATGGAACTTAGCATATAGTAAGTACACATGGGTCTTTACAGATGAAATGAAAGGTTCTTTGTCTCTCCCCATTCCACTGACTCCATGACAAGATATCTCGATTTCTCATTTGAATCTGAAGTGTAACAGATTGTAGTGTCTTATTTCGCAATCCATCCATCCATCCATCCTATTAGTTGTAGTTTCTTGCTCTTCTATGGATAAGAGGTGGGGAAGACACAAAGTAGGCTAGAAGGTTAGTAGATAGTAGTGTGTTGTCAAGCTATCTGTCCATCTTAGAAGTCGTAGTTTCTTTCCCTTGGATAGATAGGAGGTCGTGGAGAACACAAGTGAGATATAGTAGTGTGTTGTCAAGCTAGCCGTCCATTTTAGTAGTCGTAGCTTCTTGCCCTTTGATAGATAGAAGGTCATGGAGGAACAATTAGGCTAGAAGGTTAGTATATAGAAGTGTGTTGTCTCGCTATCTGTCCATCCTAGTAGTCGTAGTTTCTAGCCCTTCGATTCCTGATGCTTTCTGTTTTTTTTTTGTGTATATTGATGACCATATTATTTTGTCGTAGTAACTGCTCAGTATGCTTTGTTATGCTTTCACTTACATTACTTCTCTTTGGATTGCTTGGGACTGTTCATTTCTCGAGTCGAGGGTCTATCAGAACCAACCTCTCTACTTCTGAGGTAGGGGTAAGGTCTACATGCATTCTACCCTCCCCAGACTCCACCTTGTGGGACTACATTGGGTATGTTGTTGTTGTTGTTGTAATTTAGAGCTGAACTTGAACTCTTTCAGGTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATGGTAAGCACTAACCAGCACCTCGTTTTTCTTTTTATTCCAATTTGCTTAATGAAAGTGAAAGACTTAGTGTACGGACTGAACAGGCTGCTTAGAAGTTTGTGTCTGCATCCACTTCTTTTTCTTCATAATTGTGGTGTCCTGGCTAGCTTGAGCTCTTTCGCGGAAAAAAACACTCCCATTTTTCCCTCGGCTAGAATTTGAACCCGAGACCTCATGGTTCAGCCTACTTTGTTAACCACTAGGCCACACCCTGTGGTGTTTTTTGCATCTACTCTACTAGGGGTGGTGTGTGTATGTATATTACATATTTTTGTATAGTTGGAAATGTCTATTGACTGGACAAGTATGCACACCTCTACTATTTCACCTGGTGCCTGCTCCTGCCACTAACGCAATTTCACATAGCTTTACCCAAGGCTTAGACCGGTGGAATGAAATGACCTTGCTCTTGTTTCTTCTGGGATATATACCCTGGTCTTCATATGGTCTTTTCCGGCTTCATTATAGTTAAGCCTCATTTATACATGCTTAAAAGATGTATGTTATAGAATGTTTGTATTTGTTGCTACAAAAGAATGGTGGCTTGTACACACACGCACTCACAATATTTAATCCGGCTTGGTGGATAGGGATAGATAGGGGAGCATTTGGATAATATTTAAAGTTGTTGGGCAAAGCAGATGGGTGCACCTTTTACAAAATGACTTTGTTAAATGCAGTTTATCATTTCCTTGTTCAAACTTGTACTGTTTGGTCTAGCAGTTCACACATGTAGCAAGAATGAAATCTTGGCGCAGATATATTGAAAGCTGTTAAGTCTTTAAAACTATTAGCTAAAAATTCTCTATAGAAGTTGGTAAAAAAAAGGGTTGTATTGTCTCCTACCTCTCTGTGGTATTGAACAAAAGCCTATGTCATTGCTTACAGAAGCCAAATGGACTATATGTTGCTAAATTATTATTCCAATGTTGTATTGAATTAAAGATAGTAGGCAGTTGCACCATTTCCAAGTTATACATTGTGAGATGCTGATGTCTATGATTTGAAAAATGGAACTTTTCATGAGAGTATCTAAGCACCGTGCAATTTTACATATCCAACAGAAAATAAAATGTGAGCACATCCAAACATCACACAATGTATCTTAATTTCGTGGAGTTGTGTACCTTTTTTGCTTAATTGGCTAGTTTGTTTCAATTCATTCTGGATTGAGGCGCAGTTGGTTGTCCAATTGATGTTATTGGTTATTATTTTCGTATTCAATGTTATATTGTAATAACTGCACCCAGTTCACGATAACCCTGGGGTTTACCCTAATTTTGGAAAGTTCATCCTATTGATTGGTTAGTTTGCTTTGTGAGAATAGAATCTCACCAAACAGGGTGTGTCTAAGCTCATGTTTTTGGAATGGTGAGACTGAAAGAGATTTGGATTTCATATTATGTCTGCGCATCGAATTACAGTTTTCTTATATGGAGGTGCATGACTCAACAATTATATTTTTTGTTGGATATGATAGCTGATATACTGTACTCATGTTTAGGGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTACATATCCTTTGATTTTATATTGATCTTCGTCATTTTCTTCACCCCCCCTATTGCAAGTACTCTATACAATCTCTTTGATTTCCTTAATAAAAAAACACTAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCGGTGAGTGATCATATTTTTCAAAATGCAGTTCACTTGTTGAGTTGGTGTCATGACTCATGGGCAACCAAGTCCTTTGCTCTTGAACTTCATTTGAACATACCTTCTCGACCTTTGGAGAAGAAAATTTGAACTCAAAATTTGGAGCCAACAACTATGTGGAATTTTTCATTTTAATTTTGTACTACAAAATTAATGTTTGTACATCTATATGCTTCCACTCGACGTCTTTATATTCAGTTTATTTTTCTTATTTATTAATAGTGCAAGCTTCATCACACCTCGATTGGACTGCAGACTGCCATTTCATAGTTAATTTGAGCTGATATGTGCCACTGATCTTCTTTATCTGGTGGTTGAACTGGTAATCTTTTACAAGAGTTCCATTTCGCAGTGGAAATGTCTGTCTTTGATATACTTAGGATTCACCTAAAATAAAATTAAGCAGTAGGAATTTGCATTTAGCACCGCTTAATGGGTGTCAATCTGAAAAATTAAGTAAAATTTCAATAAATATATTCTTGCTTTCAGAGAATCCACAATGTTCTGTTCATGTGAAGGAAGTATCTGTTCAAATGGCTATTTTGTAATCCTGCTATTTTAAAAGAAATGCTATTGAAATCAGGAACTTTCTGTTGCTTTCTAGTTCATTTTTCATTTTAACGAACCAGAACTGAAATTGTACTTTGTTGCCCAATAAATCCACAGATATGAATTTTTCCCTAGCTGAATTTGTTTTACTGGTAGGTATCATGTTGCAGGAACTGTGGGTGTATACTTTGATCGTGAACCATATGCTAACGTTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAGGTACTACAGCCGACATTTGAGTTAAATTTCCTGCTAGTATTTGTAAAAGTAGCATCTTAAGCAGTTCTATCACAAATCGAGAATGTTTAATCAAACATTATTCACTATCTCTAATTTCGGTGGCTGTCGCACTTTAACCCACACTTTCTCCTCACCTCCCTCCCCTCCCACACCACCACCACCAAAAAAATATGCCCCATAGTTATGGTTGAACATGAAACTTGTTAATAGTAATTATATATACTCAAAATGCCATAGAAACTCTTAAATCTATTCATTTTTGTAATGAAATTCTGATCTAGCTTTCAATTCTTGAAACACCATTATAAAATATAAAGTGAATTTGAGTGAAGCTAGAAATTTCCTGAACTGCACACTTCTTTTAAATGGCATACAAGTTTATAACTGAAATGAAAGACTTCTGCTGAAAAATGCAGAACATATCTTCTTAGCTAAGACTGCATCTATTTCTCGGTCTTTAAATGACAACTTCTCTCCACGTGATTTTATGTCTACCTCAGCCCTCTATATCATTTTGAATCCTCATTTTATGCATGAGTTCTTTGCAGAAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGG</genome_strand>
        <mrna_strand>ATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTAC.................................................................................................TAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATGTTGCAGGAACTGTGGGTGTATACTTTGATCGTGAACCATATGCTAACGTTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCCACCCGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210191" ref_strand="+" ref_description="SGN-E210191 [cLEC-40-M1]">
      <seq>tctgtggtgatgtactcggccgtctcaatcatctattcaaacgcgtttcttcggtgaacaaggcagctggtccatttgatgctcttctttgcgtaggccaattttttcctgattcagttgaggggattgatgaattcaatggctacattgaggggcgttccaagattccgataccgacctatttcattggtgattatggtgcagggtccccaaaaatattgtcagaagcattaaaggacccgagtaacaaagggtttaagatggagggtttaagagtctgtgacaatttgtactggttgaaaggaagcgggacgtttagccttaatgggttatctgtggcatacttatctggtaggcgaactccaagtggaactcaattcggaacatatagtcaagatgatgttgatgctttgagggctttagcagaggatccagtaacagtagacatctttcttactaatgagtggcccactggagtaacaaatggaacgacatcaaaagctcctgtcgaaatttctgattcatctgggagtgatcccacagtgtcagagttggtaactgagattaagcctcggtatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="26327" stop="30410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26627" g_stop="26679" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26680" i_stop="27941" i_length="1262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27942" g_stop="28215" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="327" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28216" i_stop="29758" i_length="1543">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29759" g_stop="29888" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="457" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29889" i_stop="29985" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29986" g_stop="30102" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="574" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E210191" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26627" e_stop="26679"/>
          <exon e_start="27942" e_stop="28215"/>
          <exon e_start="29759" e_stop="29888"/>
          <exon e_start="29986" e_stop="30102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCGGTTCGTCTTCTTCTTTAATTTCATATATATCATGTTTGTATTCATATAATAGATAGATTACAGAGGCGGATGCACAGTATTGGTACCGAGTTCATTTGAATCCAATACTTTTGATACGTAGAAGTAATTTATGTGTAAAATCCACGAAAAATGCTTCAAAGAGAATACATAACTTTGAAAATACTGTGGGAGTAATGCTAAGCACCTTTAAGAGTATCCATAAAGTTTAAATTGTGCTCTAGATAGTTTGCTGACTTTAAGTTCTGGATTTGGTATAGTGTAAATATGAATTACTTAGTTTAGAGCCGAGATATGTTGTGATTACTTAGTTTAGAGCTGAGTTTGTGGAGGTTGTGTGATTTCAGGTTAGAGATAGAAGGTTAGTAGATAGTGTTGATACTTAGAAGCTATTGGAAAATGTCAATTCTAGTATACTTAGTTTCAGTTTATTATAGTTTGTACATTGTATATATATATGGAACTTAGCATATAGTAAGTACACATGGGTCTTTACAGATGAAATGAAAGGTTCTTTGTCTCTCCCCATTCCACTGACTCCATGACAAGATATCTCGATTTCTCATTTGAATCTGAAGTGTAACAGATTGTAGTGTCTTATTTCGCAATCCATCCATCCATCCATCCTATTAGTTGTAGTTTCTTGCTCTTCTATGGATAAGAGGTGGGGAAGACACAAAGTAGGCTAGAAGGTTAGTAGATAGTAGTGTGTTGTCAAGCTATCTGTCCATCTTAGAAGTCGTAGTTTCTTTCCCTTGGATAGATAGGAGGTCGTGGAGAACACAAGTGAGATATAGTAGTGTGTTGTCAAGCTAGCCGTCCATTTTAGTAGTCGTAGCTTCTTGCCCTTTGATAGATAGAAGGTCATGGAGGAACAATTAGGCTAGAAGGTTAGTATATAGAAGTGTGTTGTCTCGCTATCTGTCCATCCTAGTAGTCGTAGTTTCTAGCCCTTCGATTCCTGATGCTTTCTGTTTTTTTTTTGTGTATATTGATGACCATATTATTTTGTCGTAGTAACTGCTCAGTATGCTTTGTTATGCTTTCACTTACATTACTTCTCTTTGGATTGCTTGGGACTGTTCATTTCTCGAGTCGAGGGTCTATCAGAACCAACCTCTCTACTTCTGAGGTAGGGGTAAGGTCTACATGCATTCTACCCTCCCCAGACTCCACCTTGTGGGACTACATTGGGTATGTTGTTGTTGTTGTTGTAATTTAGAGCTGAACTTGAACTCTTTCAGGTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATGGTAAGCACTAACCAGCACCTCGTTTTTCTTTTTATTCCAATTTGCTTAATGAAAGTGAAAGACTTAGTGTACGGACTGAACAGGCTGCTTAGAAGTTTGTGTCTGCATCCACTTCTTTTTCTTCATAATTGTGGTGTCCTGGCTAGCTTGAGCTCTTTCGCGGAAAAAAACACTCCCATTTTTCCCTCGGCTAGAATTTGAACCCGAGACCTCATGGTTCAGCCTACTTTGTTAACCACTAGGCCACACCCTGTGGTGTTTTTTGCATCTACTCTACTAGGGGTGGTGTGTGTATGTATATTACATATTTTTGTATAGTTGGAAATGTCTATTGACTGGACAAGTATGCACACCTCTACTATTTCACCTGGTGCCTGCTCCTGCCACTAACGCAATTTCACATAGCTTTACCCAAGGCTTAGACCGGTGGAATGAAATGACCTTGCTCTTGTTTCTTCTGGGATATATACCCTGGTCTTCATATGGTCTTTTCCGGCTTCATTATAGTTAAGCCTCATTTATACATGCTTAAAAGATGTATGTTATAGAATGTTTGTATTTGTTGCTACAAAAGAATGGTGGCTTGTACACACACGCACTCACAATATTTAATCCGGCTTGGTGGATAGGGATAGATAGGGGAGCATTTGGATAATATTTAAAGTTGTTGGGCAAAGCAGATGGGTGCACCTTTTACAAAATGACTTTGTTAAATGCAGTTTATCATTTCCTTGTTCAAACTTGTACTGTTTGGTCTAGCAGTTCACACATGTAGCAAGAATGAAATCTTGGCGCAGATATATTGAAAGCTGTTAAGTCTTTAAAACTATTAGCTAAAAATTCTCTATAGAAGTTGGTAAAAAAAAGGGTTGTATTGTCTCCTACCTCTCTGTGGTATTGAACAAAAGCCTATGTCATTGCTTACAGAAGCCAAATGGACTATATGTTGCTAAATTATTATTCCAATGTTGTATTGAATTAAAGATAGTAGGCAGTTGCACCATTTCCAAGTTATACATTGTGAGATGCTGATGTCTATGATTTGAAAAATGGAACTTTTCATGAGAGTATCTAAGCACCGTGCAATTTTACATATCCAACAGAAAATAAAATGTGAGCACATCCAAACATCACACAATGTATCTTAATTTCGTGGAGTTGTGTACCTTTTTTGCTTAATTGGCTAGTTTGTTTCAATTCATTCTGGATTGAGGCGCAGTTGGTTGTCCAATTGATGTTATTGGTTATTATTTTCGTATTCAATGTTATATTGTAATAACTGCACCCAGTTCACGATAACCCTGGGGTTTACCCTAATTTTGGAAAGTTCATCCTATTGATTGGTTAGTTTGCTTTGTGAGAATAGAATCTCACCAAACAGGGTGTGTCTAAGCTCATGTTTTTGGAATGGTGAGACTGAAAGAGATTTGGATTTCATATTATGTCTGCGCATCGAATTACAGTTTTCTTATATGGAGGTGCATGACTCAACAATTATATTTTTTGTTGGATATGATAGCTGATATACTGTACTCATGTTTAGGGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTACATATCCTTTGATTTTATATTGATCTTCGTCATTTTCTTCACCCCCCCTATTGCAAGTACTCTATACAATCTCTTTGATTTCCTTAATAAAAAAACACTAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG</genome_strand>
        <mrna_strand>TCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGCGGGACGTTTAGCCTTAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTAC.................................................................................................TAATGAGTGGCCCACTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTCGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270189" ref_strand="+" ref_description="SGN-E270189 [cLEM-1-O15]">
      <seq>ggaacaaatggaacgacatcaaaagctcctgtagaaatttctgattcatctgggagtgatcccacagtgtcagagttggtaactgagattaagcctcggtatcatgttgcaggaactgtgggtgtatactttgatcgtgaaccatatgctaacgttgatgctctacacgtaactcgctttttgggcttagctcctgttggaaacaaagataaacagaaattcattcatgcgatatcccccactccagcatcaacaatgtcgaaaactgagcttagtgcaaagccaccaaacgctacttcatgtccatatacaaatgttgacaaagcagcccaacccgatggagccacaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="29705" stop="31968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30005" g_stop="30102" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30103" i_stop="30846" i_length="744">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30847" g_stop="30964" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="216" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30965" i_stop="31533" i_length="569">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31534" g_stop="31668" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="351" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E270189" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30005" e_stop="30102"/>
          <exon e_start="30847" e_stop="30964"/>
          <exon e_start="31534" e_stop="31668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCGGTGAGTGATCATATTTTTCAAAATGCAGTTCACTTGTTGAGTTGGTGTCATGACTCATGGGCAACCAAGTCCTTTGCTCTTGAACTTCATTTGAACATACCTTCTCGACCTTTGGAGAAGAAAATTTGAACTCAAAATTTGGAGCCAACAACTATGTGGAATTTTTCATTTTAATTTTGTACTACAAAATTAATGTTTGTACATCTATATGCTTCCACTCGACGTCTTTATATTCAGTTTATTTTTCTTATTTATTAATAGTGCAAGCTTCATCACACCTCGATTGGACTGCAGACTGCCATTTCATAGTTAATTTGAGCTGATATGTGCCACTGATCTTCTTTATCTGGTGGTTGAACTGGTAATCTTTTACAAGAGTTCCATTTCGCAGTGGAAATGTCTGTCTTTGATATACTTAGGATTCACCTAAAATAAAATTAAGCAGTAGGAATTTGCATTTAGCACCGCTTAATGGGTGTCAATCTGAAAAATTAAGTAAAATTTCAATAAATATATTCTTGCTTTCAGAGAATCCACAATGTTCTGTTCATGTGAAGGAAGTATCTGTTCAAATGGCTATTTTGTAATCCTGCTATTTTAAAAGAAATGCTATTGAAATCAGGAACTTTCTGTTGCTTTCTAGTTCATTTTTCATTTTAACGAACCAGAACTGAAATTGTACTTTGTTGCCCAATAAATCCACAGATATGAATTTTTCCCTAGCTGAATTTGTTTTACTGGTAGGTATCATGTTGCAGGAACTGTGGGTGTATACTTTGATCGTGAACCATATGCTAACGTTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAGGTACTACAGCCGACATTTGAGTTAAATTTCCTGCTAGTATTTGTAAAAGTAGCATCTTAAGCAGTTCTATCACAAATCGAGAATGTTTAATCAAACATTATTCACTATCTCTAATTTCGGTGGCTGTCGCACTTTAACCCACACTTTCTCCTCACCTCCCTCCCCTCCCACACCACCACCACCAAAAAAATATGCCCCATAGTTATGGTTGAACATGAAACTTGTTAATAGTAATTATATATACTCAAAATGCCATAGAAACTCTTAAATCTATTCATTTTTGTAATGAAATTCTGATCTAGCTTTCAATTCTTGAAACACCATTATAAAATATAAAGTGAATTTGAGTGAAGCTAGAAATTTCCTGAACTGCACACTTCTTTTAAATGGCATACAAGTTTATAACTGAAATGAAAGACTTCTGCTGAAAAATGCAGAACATATCTTCTTAGCTAAGACTGCATCTATTTCTCGGTCTTTAAATGACAACTTCTCTCCACGTGATTTTATGTCTACCTCAGCCCTCTATATCATTTTGAATCCTCATTTTATGCATGAGTTCTTTGCAGAAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGGAGCCACAAAG</genome_strand>
        <mrna_strand>GGAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCATGTTGCAGGAACTGTGGGTGTATACTTTGATCGTGAACCATATGCTAACGTTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGGAGCCACAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335071" ref_strand="+" ref_description="SGN-E335071 [cTOE-9-J12]">
      <seq>ttgatgctctacacgtaactcgctttttgggcttagctcctgttggaaacaaagataaacagaaattcattcatgcgatatcccccactccagcatcaacaatgtcgaaaactgagcttagtgcaaagccaccaaacgctacttcatgtccatatacaaatgttgacaaagcagcccaacccgatggagccacaaagaggcccggtgatggtacttctgagtcacagtattggaggtatgatgtatccaagaaaaagcagaaacatggagatggtggtggtgacagactctgctttaaatttgcctcttctggctcttgtccaagaggaaaccagtgccattttagacatgatgaagaggcttcagaacaatactcaagaggtgtgtgttttgactttctcaacaaggggaaatgtgaaaaaggtcctgattgcaacttcaagcacagcttgcaggaagaaggtgacagatcagcatctgggacagcaagctctaataggtcaagagaatgctggttttgtttgtcaagcccaaatgttgagtcacatctcatcactagtgtcggagaatattactactgtgcacttgctaaaggacctttaacacctgatcatgtgctgattatgcctattgaacacacacccaatacgttatctctgccactggaatgtgaaaaggaactggaacgacttcaaagcagcctcaaagcttacttcaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="30603" stop="32617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30903" g_stop="30964" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30965" i_stop="31533" i_length="569">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31534" g_stop="31970" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="499" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31971" i_stop="32093" i_length="123">
            <donor d_prob="0.533" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32094" g_stop="32317" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="723" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E335071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30903" e_stop="30964"/>
          <exon e_start="31534" e_stop="31970"/>
          <exon e_start="32094" e_stop="32317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAGGTACTACAGCCGACATTTGAGTTAAATTTCCTGCTAGTATTTGTAAAAGTAGCATCTTAAGCAGTTCTATCACAAATCGAGAATGTTTAATCAAACATTATTCACTATCTCTAATTTCGGTGGCTGTCGCACTTTAACCCACACTTTCTCCTCACCTCCCTCCCCTCCCACACCACCACCACCAAAAAAATATGCCCCATAGTTATGGTTGAACATGAAACTTGTTAATAGTAATTATATATACTCAAAATGCCATAGAAACTCTTAAATCTATTCATTTTTGTAATGAAATTCTGATCTAGCTTTCAATTCTTGAAACACCATTATAAAATATAAAGTGAATTTGAGTGAAGCTAGAAATTTCCTGAACTGCACACTTCTTTTAAATGGCATACAAGTTTATAACTGAAATGAAAGACTTCTGCTGAAAAATGCAGAACATATCTTCTTAGCTAAGACTGCATCTATTTCTCGGTCTTTAAATGACAACTTCTCTCCACGTGATTTTATGTCTACCTCAGCCCTCTATATCATTTTGAATCCTCATTTTATGCATGAGTTCTTTGCAGAAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGGAGCCACAAAGAGGCCCGGTGATGGTACTTCTGAGTCACAGTATTGGAGGTATGATGTATCCAAGAAAAAGCAGAAACATGGAGATGGTGGTGGTGACAGACTCTGCTTTAAATTTGCCTCTTCTGGCTCTTGTCCAAGAGGAAACCAGTGCCATTTTAGACATGATGAAGAGGCTTCAGAACAATACTCAAGAGGTGTGTGTTTTGACTTTCTCAACAAGGGGAAATGTGAAAAAGGTCCTGATTGCAACTTCAAGCACAGCTTGCAGGAAGAAGGTGACAGATCAGCATCTGGGACAGCAAGCTCTAATAGGTTATCGAACTACTTGATTTTTCTTGATGACGTTGCAGTATCAATGTTTACTGGCTTGTGGGCCTTCATTAGTGCTCCCTTGCTTTTGTAGTAAGTTTTGTGGTAACTTTAACTGTTTTTCAGGTCAAGAGAATGCTGGTTTTGTTTGTCAAGCCCAAATGTTGAGTCACATCTCATCACTAGTGTCGGAGAATATTACTACTGTGCACTTGCTAAAGGACCTTTAACACCTGATCATGTGCTGATTATGCCTATTGAACACACACCCAATACGTTATCTCTGCCACTGGAATGTGAAAAGGAACTGGAACGACTTCAAAGCAGCCTCAAAGCTTACTTCAAAAAGC</genome_strand>
        <mrna_strand>TTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGGAGCCACAAAGAGGCCCGGTGATGGTACTTCTGAGTCACAGTATTGGAGGTATGATGTATCCAAGAAAAAGCAGAAACATGGAGATGGTGGTGGTGACAGACTCTGCTTTAAATTTGCCTCTTCTGGCTCTTGTCCAAGAGGAAACCAGTGCCATTTTAGACATGATGAAGAGGCTTCAGAACAATACTCAAGAGGTGTGTGTTTTGACTTTCTCAACAAGGGGAAATGTGAAAAAGGTCCTGATTGCAACTTCAAGCACAGCTTGCAGGAAGAAGGTGACAGATCAGCATCTGGGACAGCAAGCTCTAATAG...........................................................................................................................GTCAAGAGAATGCTGGTTTTGTTTGTCAAGCCCAAATGTTGAGTCACATCTCATCACTAGTGTCGGAGAATATTACTACTGTGCACTTGCTAAAGGACCTTTAACACCTGATCATGTGCTGATTATGCCTATTGAACACACACCCAATACGTTATCTCTGCCACTGGAATGTGAAAAGGAACTGGAACGACTTCAAAGCAGCCTCAAAGCTTACTTCAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352789" ref_strand="+" ref_description="SGN-E352789 [cTOS-11-A13]">
      <seq>gaagacaagcgttgcggacacagttcgacagaagttgcagcttattttatgttgaagttcctggaggtgatattttgtcacatgttattgaggagaatgaaaaattcccagctcaatttggtcgtgaggttttagcaggcttgttgaatatagcagatagagctgattggagaaattgtaaggttagtaaagaagaagaaactaaaatggctgagcgattcaagaacggatttcaagaatatgatccaaatcaatagcatagccgagaaatatgcaacactatatatcgagttctttctctcgtgttcttcattatatgcaacttcaacatttccttgaggacgctgttgtaaccgcctaaccgggcagcaacaacattgctgcaatttccatgtatgtaaccccatgtccagttaggctattgaggtagttttgttcatgtatgagcttgtgagtttgtttcaactatttgagataatgtaatacacaatagtgacagcttcttctttttttttttcctgaagcaattgtaactttattgtccactgaattgttttttgtttgttaaaatatttggatcctttatgaaattacactgtgggatctattatattatgttccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="33695" stop="35206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33995" g_stop="34122" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34123" i_stop="34285" i_length="163">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34286" g_stop="34497" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="340" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34498" i_stop="34620" i_length="123">
            <donor d_prob="0.385" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34621" g_stop="34915" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="633" r_length="293" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E352789" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33995" e_stop="34122"/>
          <exon e_start="34286" e_stop="34497"/>
          <exon e_start="34621" e_stop="34915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACAAGCGTTGCGGACACAGTTCGACAGAAGTTGCAGCTTATTTTATGTTGAAGTTCCTGGAGGTGATATTTTGTCACATGTTATTGAGGAGAATGAAAAATTCCCAGCTCAATTTGGTCGTGAGGTAAGATGAGTCCACCTTTATCTAGTAATGTATCATTTATAGCTAAAAATTCGACAGGTGATAAACGCTTAGTTTGCATCCTTTTTTTTTTAATGTAAAATATGTCTTAACAGCTATACTTCCGCTTAAGTAACAGACGTAACATTCCATGAACGTCCCACAGGTTTTAGCAGGCTTGTTGAATATAGCAGATAGAGCTGATTGGAGAAATTGTAAGGTTAGTAAAGAAGAAGAAACTAAAATGGCTGAGCGATTCAAGAACGGATTTCAAGAATATGATCCAAATCAATAGCATAGCCGAGAAATATGCAACACTATATATCGAGTTCTTTCTCTCGTGTTCTTCATTATATGCAACTTCAACATTTCCTTGAGGTTCTCTCTGCTCCTGGCTTCAATCTAACTGCAAGTATCTGCAAATTCTTTACATGCACGTATTCTTGTTATGCTTGAACAGTCACTATATCATTTTCTGAAAACATTGTTGTCGTTTAACAGGACGCTGTTGTAACCGCCTAACCGGGCAGCAACAACATTGCTGCAATTTCCATGTATGTAACCCCATGTCCAGTTAGGCTATTGAGGTAGTTTTGTTCATGTATGAGCTTGTGAGTTTGTTTCAACTATTTGAGATAATGTAATACACAATAGTGACAGCTTCTTCTTTTTTTTTTTTCCTGAAGCAATTGTAACTTTATTGTCCACTGAATTGTTTTTTGTTTGTTAAAAATATTTGGATCCTTTATGAATTACAACTGTGGGATCTATTATATTATGTTCCAAACTTTAAAGA</genome_strand>
        <mrna_strand>GAAGACAAGCGTTGCGGACACAGTTCGACAGAAGTTGCAGCTTATTTTATGTTGAAGTTCCTGGAGGTGATATTTTGTCACATGTTATTGAGGAGAATGAAAAATTCCCAGCTCAATTTGGTCGTGAG...................................................................................................................................................................GTTTTAGCAGGCTTGTTGAATATAGCAGATAGAGCTGATTGGAGAAATTGTAAGGTTAGTAAAGAAGAAGAAACTAAAATGGCTGAGCGATTCAAGAACGGATTTCAAGAATATGATCCAAATCAATAGCATAGCCGAGAAATATGCAACACTATATATCGAGTTCTTTCTCTCGTGTTCTTCATTATATGCAACTTCAACATTTCCTTGAG...........................................................................................................................GACGCTGTTGTAACCGCCTAACCGGGCAGCAACAACATTGCTGCAATTTCCATGTATGTAACCCCATGTCCAGTTAGGCTATTGAGGTAGTTTTGTTCATGTATGAGCTTGTGAGTTTGTTTCAACTATTTGAGATAATGTAATACACAATAGTGACAGCTTCTTC-TTTTTTTTTTTCCTGAAGCAATTGTAACTTTATTGTCCACTGAATTGTTTTTTGTTTGTT-AAAATATTTGGATCCTTTATGAAATTACACTGTGGGATCTATTATATTATGTTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222190" ref_strand="+" ref_description="SGN-E222190 [cLEL-16-G16](-)">
      <seq>ggcacgagaacacttcgagtctacgcgagatcatctcatattctctcaaatttattgaagaaatggctcaatcagcaaaaccgatctcgagtccagtacctgatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35431" stop="38670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35724" g_stop="35787" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="172" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="251" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38370" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="427" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E222190" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35724" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGC-TTTCAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTA</genome_strand>
        <mrna_strand>GGCACGAGAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348446" ref_strand="+" ref_description="SGN-E348446 [cTOF-30-I5]">
      <seq>tttcaacacttcgagtctacgcgagatcatctcatattctctcaaatttattgaagaaatggctcaatcagcaaaaccgatctcgagtccagtacctgatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactttatagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35427" stop="38779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35727" g_stop="35787" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="168" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="247" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38484" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="537" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E348446" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35727" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGT</genome_strand>
        <mrna_strand>TTTCAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298812" ref_strand="+" ref_description="SGN-E298812 [cLET-44-M10]">
      <seq>gcaacacttcgagtctacgcgagatcatcttatattctctcaaatttattgaagaaatggctcaatcagcaaaaccgatctcgagtccagtacctgatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactgtatagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35430" stop="38773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35729" g_stop="35787" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="166" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="245" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38473" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="524" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E298812" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35729" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAA</genome_strand>
        <mrna_strand>GCAACACTTCGAGTCTACGCGAGATCATCTTATATTCTCTCAAATTTATTGAAGAAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTGTATAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747283" ref_strand="+" ref_description="SGN-E747283 [GI|47104679]">
      <seq>caacacttcgagtctacgcgagatcatctcatattctctcaaatttattgaagaaatggctcaatcagcaaaaccgatctcgagtccagtacctgatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactttatagaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35430" stop="38779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35730" g_stop="35787" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="165" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="244" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38484" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="534" r_length="290" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E747283" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35730" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGT</genome_strand>
        <mrna_strand>CAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343931" ref_strand="+" ref_description="SGN-E343931 [cTOF-12-P24]">
      <seq>acacttcgagtctacgcgagatcatctcatattctctcaaatttattgaagaaatggctcaatcagcaaaaccgatctcgagtccagtacctgatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactttatagaacaaaaantgagtgntatccctttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35432" stop="38798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35732" g_stop="35787" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="163" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="242" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38484" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="533" r_length="291" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="563"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E343931" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35732" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAA-TGAGT</genome_strand>
        <mrna_strand>ACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAANTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228509" ref_strand="+" ref_description="SGN-E228509 [cLED-3-B12]">
      <seq>tcgagtctacgcgagatcatctcatattctctcaaatttattgaagaaatggctcaatcagcaaaaccgatctcgagtccagtacctgatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactttatagaacaaaaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35437" stop="38784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35737" g_stop="35787" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="158" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="237" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38484" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="527" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E228509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35737" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGT</genome_strand>
        <mrna_strand>TCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724179" ref_strand="+" ref_description="SGN-E724179 [FC23BC05]">
      <seq>acgcgagatcatctcatattctctcaaatttattgaagaaatggctcaatcagcaaaaccgatctcgagtccagtacctgatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactttatagaacaaaaatgagtgtatccctttgttatgttttttcttgagccacgggtttattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35445" stop="38829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35745" g_stop="35787" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="150" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="229" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38529" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="563" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E724179" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35745" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGTGTATCCCTTTGTTATGTTTTTTTCTTGAGCCACGGGTTTATTGGA</genome_strand>
        <mrna_strand>ACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGTGTATCCCTTTGTTATG-TTTTTTCTTGAGCCACGGGTTTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E222450" ref_strand="+" ref_description="SGN-E222450 [cLEL-16-G14](-)">
      <seq>aaatggctcaatcagcaaaaccgatctcgagtccagtacctaatgcgtggtacccaaccctagcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggataaagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35603" stop="38670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35783" g_stop="35787" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35907" g_stop="36013" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="112" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="191" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38195" g_stop="38370" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="367" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="368" polyA_stop="384"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E222450" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35783" e_stop="35787"/>
          <exon e_start="35907" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTATTCAATTTCATCTCCTTTTGTTGTTAATCTTACAGTTTTTGGTGATTTTTTTTTTGAAAATTTTGATGTGATTTTGTTGTATTTTTTTTTTTTTTTGGAATTTTTTCTTGTGAAAGGCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTA</genome_strand>
        <mrna_strand>AAATG.......................................................................................................................GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTAATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAAAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217636" ref_strand="+" ref_description="SGN-E217636 [cLEL-25-G15](-)">
      <seq>tcagcaaaaccgatctgagtccagtacctgatgcgtggtacccaaaccctagcagtgttcatgcttgcaattggtcttgtggaactgctccatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactttatagaacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35613" stop="38779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35913" g_stop="36013" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="179" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38195" g_stop="38484" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="469" r_length="290" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="480"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E217636" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35913" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCC-AACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGT</genome_strand>
        <mrna_strand>TCAGCAAAACCGATCT-GAGTCCAGTACCTGATGCGTGGTACCCAAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTGG-AACTGCTCCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216815" ref_strand="+" ref_description="SGN-E216815 [cLEL-1-E8](-)">
      <seq>gcagtgttcatgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacccagtctagtctgagaatttatcccctaatggcaagcattggagaactagttgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35664" stop="38724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35964" g_stop="36013" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="129" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38195" g_stop="38423" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="358" r_length="229" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="380"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E216815" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35964" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAA</genome_strand>
        <mrna_strand>GCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCCAGTCTAGTCTGAGAATTTATCCCCTAATGGCAAGCATTGGAGAACTAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216465" ref_strand="+" ref_description="SGN-E216465 [cLEL-1-L5](-)">
      <seq>catgcttgcaattggtcttgttgtaactgcttcatttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaacggcaagcattggagaactagttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="35672" stop="38724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35972" g_stop="36013" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="121" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38195" g_stop="38423" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="350" r_length="229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="351" polyA_stop="371"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E216465" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35972" e_stop="36013"/>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCATGTAAGTCCTCGATCTGATCTTTTTCAAGCTCATAAAATGGTGGATTTTATTTATATTTTTGCAATTTTTTTCATGCATTAGAAAGATGTGTTATTTATTTAATGTTGCTAATAAAATGGTGGATTTTGATATTTTTGTAATTTTTTTTCATGCTTATTGATCAATATTGGAATGAAATTGACATGAATTAGAGTGATTTTGAGGGTTTTTTTGCAGTGGATCTAATTAGATTAAGGGTGTGTTTGGCAGAGAATAGGGGTTGCAACAGTATGGTTGAGTGAAAATTGGGTGTTTTTGGTATGAATGTCCAAGTATTTCATGTTTGGTTGGTCAAAGTATTATCAGAAATATTTTCTCTAGAAAAACAAGTTGTTCAACAATATGGAAAATTGCTTTCCTAATAGAAGTACGGAAAAGATGTTTCTAGGTGATGTTTCGAGTTCATTGCCTCCTCTTCCTACTGACATAGCTTTTTGCTAGATTGCATAAAAATATTTGCTTATGCTACATGTATACAGTTCTGAGATTTTCCTCGCTATTACTGAAGGAGAGTATCTGAGTTATCGTTGATTGATATTTGATGGTATCAGCATCTGTGCGAAAAGATTGCTTTGTCAGTTTGTTGAAATGCAGTTGATTTTTTTTTAATGAAATAGACTGTTGAAGATCTAGTTGCGTTTTGTGAGTAAGGAATTTAAATAACATATAATTGTTAATTTGGTTATCTTATATGAAGTACATGTTACTTTTGTTGAAGAGAACTCTCTTTGGTGGCTGGTTGTGTTAGAATAGCTTGGGCTTTAGGTGTGCTTGTTGACTGTTGTAGCTGTTTTTGTTAATGATGAAAGTTTGAGAACAGTTTACATCAAATAGGATAATAAATCTTAGGGGATGTTATCATTCTCTATGTTGCTTGGGCTCTTCAGAAATGTCAATAAGTGCATGTCGGATTAGCCAAAAGTAGTGTATTTTTGGAGAATCCGACACGGATGTGGTATCGAAAGTGGAGAGTACACGCAACTTAGATCATTCCTACTCCATACCCCTGGCATGAAGACATTATTCATTTTATGTGAATCACAACTAATGTTTTATAGCATCTTTTGGTTGTTGGAATTAAACTTGAAGGTTTGGGCCATTAACTTTTGGTCAATTTTATTTCGTGTTTAAAAATGTTACATGCTTGTATTAGATAAACTGTCTAACCAGGCAGAGTGAGATATTTTTCCTTCCTTCTCGAGGCGGAAGGATGTAGGGAATAAGTATGGATAGATTAAGCAACCTGATGGATTTATTTTCCCTTTTCCTCTGAAATACTTTAAGACCTTCCCTTTTCCTTTTTGAGAGAATCATGGAACTTATTCCAAGGTACAATTAGAGCTATCCTCTTGTATTTAATGTGAAGCTTTAAGATGAAAAATTCAAGTCACAATTACGGCTTAAGGGCTTGTAGGCTGTAGCTAACGTAGTCTTAATTGTTTGTCTTCCTCCATATGATTTCAAAATTCTTTGGCTTTGACGCTGCCTACCCTGTAAGTAATCACTCTTCAGAAGTCTATAAATTTACAATCAAAAAAGAAAACAGCGAGAAGTCTATACGACTTTAGAGTTGCTACTCTTAGATATGACCTATAGGAAAAAGTGGTAAAAGAAATCTTTTTTCTGTTACCCTAGAGCAAACTAGCAAGGTTAAGAGCTTGCCCTGGGGCATTTCAGATATTTGAGAGACATCACTTTCAGAAAAATCTGTTCTGTGACATACTTCTTGAAGAGTACAAAGTCTACATAGTGAACATGGATATCCAACTTTGCTGAGATATAATTCATGAATCATGGCAATTCTCCAAATCTATTAAATTATAATACTTCAACGAATAAAAAATATTCTCGGATTACTCATTAGACTATAACTTTACAATGTTAAAGAATAATAGTTTGCTGCATTTTTCTTTTTTTTGCGGGTTCTAACTTCTACAAGTGCTGTTGTCTTTTCTTCTTCTAACAAAACCTATGAATATGTGACAGCTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAA</genome_strand>
        <mrna_strand>CATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAACGGCAAGCATTGGAGAACTAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217586" ref_strand="+" ref_description="SGN-E217586 [cLEL-25-G5](-)">
      <seq>atttttcatctatgaagctactgctccgaggaaataccgtagtcttgcaaaggagcttgtaacagggacagtagcgtctgttttcttgggttttggatccttgtttttgctacttgcttccggcgtatatgtttgatccatctacatggatagagatatgaagttttttactaatgtttctacatgaacggttttgagtactgctgtgattttatatgacttatcgttgaagaccgtatctatagaactgattattatcacctagtctagtctgagaatttattacttaatggcaagcattggagaactagttgaaaattttctgaggtacaagaaaatacttcttatgatcaattactttatagaccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0216D04-T8IuJ/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0216D04.1" temp_strand="+" temp_description="C12HBa0216D04.1  AC235475.2 htgs_phase:2 submitted_to_sgn_as:gi|237874305|gb|AC235475.2| upload_account_name:italy Solanum lycopersicum chromosome 12 clone LE_HBa-216D4, WORKING DRAFT SEQUENCE, 3 ordered pieces">
        <position start="37730" stop="38779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38039" g_stop="38117" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="88" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.683" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38195" g_stop="38484" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="378" r_length="290" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="389"/>
      <MATCH_line gen_id="C12HBa0216D04.1" gen_strand="+" ref_id="SGN-E217586" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0216D04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38039" e_stop="38117"/>
          <exon e_start="38195" e_stop="38484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTGGTACGTACACTAAAATGATTTGATCTGTCGTTTTTGCTAGTTCCTTGTGCTGACTCCTCACCCCGCATCTCATGCAGGGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGT</genome_strand>
        <mrna_strand>CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG.............................................................................GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>40</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3992" PGL_stop="12626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3992" e_stop="4167"/>
            <exon e_start="4244" e_stop="4628"/>
            <exon e_start="6007" e_stop="6087"/>
            <exon e_start="6796" e_stop="6920"/>
            <exon e_start="7003" e_stop="7078"/>
            <exon e_start="7290" e_stop="7357"/>
            <exon e_start="8130" e_stop="8253"/>
            <exon e_start="8435" e_stop="8521"/>
            <exon e_start="9216" e_stop="9317"/>
            <exon e_start="9401" e_stop="9537"/>
            <exon e_start="10236" e_stop="10317"/>
            <exon e_start="10441" e_stop="10461"/>
            <exon e_start="10631" e_stop="10693"/>
            <exon e_start="11672" e_stop="11719"/>
            <exon e_start="11852" e_stop="11914"/>
            <exon e_start="12085" e_stop="12138"/>
            <exon e_start="12232" e_stop="12626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.969" e_score="0.944"/>
          <exon-intron don_prob="0.991" acc_prob="0.906" e_score="0.961"/>
          <exon-intron don_prob="0.899" acc_prob="0.926" e_score="0.985"/>
          <exon-intron don_prob="0.991" acc_prob="0.761" e_score="0.919"/>
          <exon-intron don_prob="0.883" acc_prob="0.803" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.245" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.609" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.099" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3992" e_stop="4167" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.969">
            <gDNA_intron_boundary i_start="4168" i_stop="4243" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4244" e_stop="4628" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="4629" i_stop="6006" i_length="1378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6007" e_stop="6087" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6088" i_stop="6795" i_length="708"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="6796" e_stop="6920" e_length="125"/>
          </exon>
          <intron i_serial="4" don_prob="0.825" acc_prob="0.969">
            <gDNA_intron_boundary i_start="6921" i_stop="7002" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.961">
            <gDNA_exon_boundary e_start="7003" e_stop="7078" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.906">
            <gDNA_intron_boundary i_start="7079" i_stop="7289" i_length="211"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="7290" e_stop="7357" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.926">
            <gDNA_intron_boundary i_start="7358" i_stop="8129" i_length="772"/>
          </intron>
          <exon e_serial="7" e_score="0.919">
            <gDNA_exon_boundary e_start="8130" e_stop="8253" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.761">
            <gDNA_intron_boundary i_start="8254" i_stop="8434" i_length="181"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8435" e_stop="8521" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.883" acc_prob="0.803">
            <gDNA_intron_boundary i_start="8522" i_stop="9215" i_length="694"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9216" e_stop="9317" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="9318" i_stop="9400" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9401" e_stop="9537" e_length="137"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.669">
            <gDNA_intron_boundary i_start="9538" i_stop="10235" i_length="698"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="10236" e_stop="10317" e_length="82"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.245">
            <gDNA_intron_boundary i_start="10318" i_stop="10440" i_length="123"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="10441" e_stop="10461" e_length="21"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.609">
            <gDNA_intron_boundary i_start="10462" i_stop="10630" i_length="169"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="10631" e_stop="10693" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10694" i_stop="11671" i_length="978"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="11672" e_stop="11719" e_length="48"/>
          </exon>
          <intron i_serial="14" don_prob="0.991" acc_prob="0.099">
            <gDNA_intron_boundary i_start="11720" i_stop="11851" i_length="132"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="11852" e_stop="11914" e_length="63"/>
          </exon>
          <intron i_serial="15" don_prob="0.937" acc_prob="0.959">
            <gDNA_intron_boundary i_start="11915" i_stop="12084" i_length="170"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="12085" e_stop="12138" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="12139" i_stop="12231" i_length="93"/>
          </intron>
          <exon e_serial="17" e_score="0.922">
            <gDNA_exon_boundary e_start="12232" e_stop="12626" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3992" stop="4167"/>
              <exon start="4244" stop="4461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4110" stop="4167"/>
              <exon start="4244" stop="4628"/>
              <exon start="6007" stop="6085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6008" stop="6087"/>
              <exon start="6796" stop="6920"/>
              <exon start="7003" stop="7078"/>
              <exon start="7290" stop="7357"/>
              <exon start="8130" stop="8253"/>
              <exon start="8435" stop="8521"/>
              <exon start="9216" stop="9317"/>
              <exon start="9401" stop="9462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8245" stop="8253"/>
              <exon start="8435" stop="8521"/>
              <exon start="9216" stop="9317"/>
              <exon start="9401" stop="9537"/>
              <exon start="10236" stop="10317"/>
              <exon start="10441" stop="10461"/>
              <exon start="10631" stop="10693"/>
              <exon start="11672" stop="11719"/>
              <exon start="11852" stop="11914"/>
              <exon start="12085" stop="12138"/>
              <exon start="12232" stop="12267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8245" stop="8253"/>
              <exon start="8435" stop="8521"/>
              <exon start="9216" stop="9317"/>
              <exon start="9401" stop="9537"/>
              <exon start="10236" stop="10317"/>
              <exon start="10441" stop="10461"/>
              <exon start="10631" stop="10693"/>
              <exon start="11672" stop="11719"/>
              <exon start="11852" stop="11903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9502" stop="9537"/>
              <exon start="10236" stop="10317"/>
              <exon start="10441" stop="10461"/>
              <exon start="10631" stop="10693"/>
              <exon start="11672" stop="11719"/>
              <exon start="11852" stop="11914"/>
              <exon start="12085" stop="12138"/>
              <exon start="12232" stop="12571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11672" stop="11719"/>
              <exon start="11852" stop="11914"/>
              <exon start="12085" stop="12138"/>
              <exon start="12232" stop="12626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG : ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG : AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG : AGGGTTCTTGGTGTTCATGTTGCACTGACAATATTCTGACTACTATTGCAGTATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTG : TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT : GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG : GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG : GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG : CTTAGCTATCCTCGCTCTGCATCCATTCGGAAGGGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG : TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG : GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG : TATTGGAGACTTTGGAATATG : CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG : GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG : CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG : ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT : GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</gDNA_template>
            <first_frame> H  E  I  L  V  L  D  F  R  *  *  R  N  F  *  T  A  M  V  *  I  Q  Q  T  N  K  Q  I  L  L  Q  I  S  I  F  M  A  A  G  S  S  T  R  I  F  L  C  I  L  Q  Q  L  L  L  *  S  Q  I  R :   L  D  T  M  T  I  N  P  E  S  I  T  S  S  S  D  G  N  N  N  L  R  R  R  R  S  G  G  G  G  G  D  R  S  V  N  D  V  T  E  L  D  S  S  S  V  D  A  S  S  S  S  D  D  V  T  S  D  V  M  D  G  S  G  N  G  G  L  D  R  V  S  E  A  V  S  T  T  I  G  K  I  S  D  G  D  G  I  Q  E  E  Q  R  K  A  N  E  T  T  P  L  K  Y  V  Y  R  A  S  A  P  A  H  R  R  N  K  E  S  P  L  S  S  A  A  I  F  K  Q  :  S  H  A  G  L  L  N  L  C  I  V  V  L  I  A  V  N  S  R  L  I  I  E  N  L  M  K  :  R  V  L  G  V  H  V  A  L  T  I  F  *  L  L  L  Q  Y  G  L  L  I  G  S  G  F  W  S  S  S  T  S  V  R  D  W  P  L  L  M  C  C :   L  S  L  P  I  F  P  L  A  A  F  L  V  E  K  M  A  Q  K  K  Y  M  T  E  H  :  V  V  V  T  L  H  I  I  I  T  T  A  S  I  L  Y  P  V  L  V  I  L  R :   C  D  S  A  F  L  S  G  V  T  L  M  M  F  A  C  I  V  W  M  K  L  V  S  Y  A  H  T  N  Y  D  M  R  Q  L  A  K  S  V  N  E  :  G  E  N  S  E  I  N  Y  S  Y  N  V  S  F  E  S  L  A  Y  F  M  V  A  P  T  L  C  Y  Q  :  L  S  Y  P  R  S  A  S  I  R  K  G  W  L  A  R  Q  L  I  K  L  V  I  F  T  G  L  M  G  F  I  I  E  Q  :  Y  I  N  P  I  V  R  S  S  R  H  P  F  E  G  N  L  L  Y  A  I  E  R  V  L  K  L  S  V  P  I  L  Y  V  W  L  C  M  F  Y  S  L  F  H  L  W :   L  N  I  L  A  E  V  L  R  F  G  D  R  E  F  Y  K  D  W  W  N  A  K  T  I  D  E  :  Y  W  R  L  W  N  M  :  P  V  H  K  W  M  V  R  H  I  Y  F  P  C  L  R  N  G  I  P  K  :  G  V  A  M  V  I  S  F  F  I  S  A  V  F  H  E  :  L  C  I  A  V  P  C  R  L  F  K  F  W  A  F  L  G  I  M  F  Q  :  I  P  L  V  I  L  T  N  F  L  Q  N  K  F  K  N  S  N  :  V  G  N  M  T  F  W  C  F  F  C  I  V  G  Q  P  M  C  V  L  L  Y  Y  H  D  V  M  N  R  N  G  S  S  S  *  S  F  I  V  D  H  F  V  G  P  R  L  T  S  E  Y  R  S  F  E  L  S  D  A  L  L  I  C  L  K  W  R  K  F  F  S  K  I  *  H  Q  G  I  E  Q  N  C  C  F  V  L  Y  L  S  F  D  I  *  E  M  Y  I  I  F  C  *  G  K  M  *  *  A  Q  I  S  D  S  V  L  I  S  N  F  P  Y  L  L  F  D  M  H  Y  R  Y  I  H   </first_frame>
            <second_frame>  T  R  Y  L  F  W  I  F  V  D  K  E  T  S  K  R  L  W  C  E  F  N  K  Q  I  N  K  S  F  C  K  S  Q  F  S  W  R  R  E  A  L  H  V  F  S  F  V  Y  F  N  N  C  F  Y  R  V  K  F   : D  L  I  R  *  R  S  I  R  R  V  L  H  R  Q  A  T  A  I  T  T  S  E  G  G  V  A  A  A  A  A  V  I  D  L  *  M  M  *  R  S  W  I  R  A  L  W  M  L  R  V  A  R  M  M  *  R  V  T  S  W  M  E  V  E  T  E  D  W  I  G  *  V  R  L  *  V  R  R  L  G  R  L  V  M  E  M  E  F  R  R  S  R  G  K  R  M  K  R  R  R  *  S  M  F  I  E  R  R  H  R  L  T  G  G  T  R  K  V  L  L  V  R  P  L  F  S  N  R :   V  M  L  A  Y  S  I  S  V  *  W  C  L  L  P  *  T  A  G  *  L  L  R  I  *  *  R :   G  F  L  V  F  M  L  H  *  Q  Y  S  D  Y  Y  C  S  M  A  C  *  L  G  Q  A  S  G  V  V  Q  H  Q  *  E  I  G  H  F  *  C  A   : V  L  V  F  R  F  S  L  L  L  L  F  L  S  R  K  W  H  R  R  S  I  *  L  N  M :   *  L  S  L  F  T  *  L  *  R  Q  L  P  F  C  I  Q  F  W  S  S  S   : G  V  I  L  L  F  Y  R  V  S  H  *  *  C  L  L  A  L  C  G  *  N  *  F  L  M  H  I  Q  I  M  I  *  D  S  L  Q  S  L  *  M  R :   V  R  I  P  K  S  T  T  L  T  M  L  V  S  R  V  W  L  T  S  W  L  L  Q  L  Y  A  I  S :   L  A  I  L  A  L  H  P  F  G  R  V  G  W  P  A  N  S  S  S  W  *  F  L  Q  D  *  W  D  L  S  L  S  S :   I  L  T  R  L  C  E  A  H  D  I  H  L  K  E  T  F  Y  T  P  S  R  G  Y  *  S  F  Q  F  Q  F  Y  M  S  G  S  A  C  S  T  A  S  F  I  F   : G  *  I  Y  L  R  K  F  C  D  L  G  I  V  S  S  I  K  I  G  G  T  Q  K  Q  L  M  S :   I  G  D  F  G  I  C :   L  Y  I  S  G  W  F  V  T  S  I  S  H  A  *  E  M  A  Y  L  R :   E  L  Q  W  *  S  L  S  L  Y  L  L  F  S  M  S :   C  V  L  L  F  L  V  G  Y  S  S  F  G  H  S  L  E  S  C  F  R :   F  P  W  S  Y  *  R  T  S  C  K  T  S  S  K  T  R  M :   W  A  T  *  H  S  G  A  F  S  A  L  L  V  N  Q  C  V  C  F  C  I  T  M  M  *  *  I  E  M  V  A  Q  V  K  A  S  S  S  I  I  L  L  D  R  D  S  L  V  S  I  A  V  L  N  Y  L  M  L  Y  L  Y  A  *  N  G  E  N  S  F  L  K  F  D  T  K  E  L  N  R  I  V  A  L  Y  Y  I  F  L  L  I  F  K  K  C  I  S  F  F  V  E  V  K  C  N  K  L  K  L  V  I  V  F  *  F  R  I  F  P  I  Y  Y  L  T  C  I  I  V  I  Y  I  </second_frame>
            <third_frame>   R  D  T  C  S  G  F  S  L  I  K  K  L  L  N  G  Y  G  V  N  S  T  N  K  *  T  N  P  S  A  N  L  N  F  H  G  G  G  K  L  Y  T  Y  F  P  L  Y  T  S  T  I  A  F  I  E  S  N  S  :  T  *  Y  D  D  D  Q  S  G  E  Y  Y  I  V  K  R  R  Q  *  Q  P  P  K  A  A  *  R  R  R  R  R  *  *  I  C  E  *  C  D  G  V  G  F  E  L  C  G  C  F  E  *  L  G  *  C  N  E  *  R  H  G  W  K  W  K  R  R  I  G  *  G  E  *  G  C  E  Y  D  D  W  E  D  *  *  W  R  W  N  S  G  G  A  E  E  S  E  *  N  D  A  V  E  V  C  L  *  S  V  G  T  G  S  P  A  E  Q  G  K  S  S  *  F  G  R  Y  F  Q  T   : E  S  C  W  L  T  Q  S  L  Y  S  G  A  Y  C  R  K  Q  Q  A  D  Y  *  E  F  D  E   : E  G  S  W  C  S  C  C  T  D  N  I  L  T  T  I  A  V  W  L  V  N  W  V  R  L  L  E  *  F  N  I  S  K  R  L  A  T  S  D  V  L  :  S  *  S  S  D  F  P  S  C  C  F  S  C  R  E  N  G  T  E  E  V  Y  D  *  T   : C  S  C  H  S  S  H  N  Y  N  D  S  F  H  F  V  S  S  S  G  H  P  Q  :  V  *  F  C  F  S  I  G  C  H  T  D  D  V  C  L  H  C  V  D  E  T  S  F  L  C  T  Y  K  L  *  Y  E  T  A  C  K  V  C  E  *   : G  *  E  F  R  N  Q  L  L  L  Q  C  *  F  R  E  F  G  L  L  H  G  C  S  N  F  M  L  S   : A  *  L  S  S  L  C  I  H  S  E  G  L  A  G  P  P  T  H  Q  A  G  N  F  Y  R  I  N  G  I  Y  H  *  A   : V  Y  *  P  D  C  A  K  L  T  T  S  I  *  R  K  P  F  I  R  H  R  E  G  I  E  A  F  S  S  N  F  I  C  L  A  L  H  V  L  Q  P  L  S  S  L  :  V  K  Y  T  C  G  S  S  A  I  W  G  S  *  V  L  *  R  L  V  E  R  K  N  N  *  *   : V  L  E  T  L  E  Y   : A  C  T  *  V  D  G  S  S  H  L  F  P  M  L  K  K  W  H  T  *   : G  S  C  N  G  D  L  F  L  Y  I  C  C  F  P  *   : A  V  Y  C  C  S  L  S  A  I  Q  V  L  G  I  P  W  N  H  V  S   : D  S  L  G  H  T  N  E  L  P  A  K  Q  V  Q  K  L  E   : C  G  Q  H  D  I  L  V  L  F  L  H  C  W  S  T  N  V  C  A  S  V  L  P  *  C  D  E  *  K  W  *  L  K  L  K  L  H  R  R  S  F  C  W  T  A  T  H  *  *  V  S  Q  F  *  T  I  *  C  F  T  Y  M  L  E  M  E  K  I  L  F  *  N  L  T  P  R  N  *  T  E  L  L  L  C  I  I  S  F  F  *  Y  L  R  N  V  Y  H  F  L  L  R  *  N  V  I  S  S  N  *  *  *  C  S  N  F  E  F  S  L  F  T  I  *  H  A  L  S  L  Y  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6835" stop="6920"/>
                    <exon start="7003" stop="7078"/>
                    <exon start="7290" stop="7357"/>
                    <exon start="8130" stop="8253"/>
                    <exon start="8435" stop="8521"/>
                    <exon start="9216" stop="9317"/>
                    <exon start="9401" stop="9537"/>
                    <exon start="10236" stop="10317"/>
                    <exon start="10441" stop="10461"/>
                    <exon start="10631" stop="10693"/>
                    <exon start="11672" stop="11719"/>
                    <exon start="11852" stop="11914"/>
                    <exon start="12085" stop="12138"/>
                    <exon start="12232" stop="12336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLQYGLLIGSGFWSSSTSVRDWPLLMCCLSLPIFPLAAFLVEKMAQKKYMTEHVVVTLHIIITTASILYPVLVILRCDSAFLSGVTLMMFACIVWMKLVSYAHTNYDMRQLAKSVNEGENSEINYSYNVSFESLAYFMVAPTLCYQLSYPRSASIRKGWLARQLIKLVIFTGLMGFIIEQYINPIVRSSRHPFEGNLLYAIERVLKLSVPILYVWLCMFYSLFHLWLNILAEVLRFGDREFYKDWWNAKTIDEYWRLWNMPVHKWMVRHIYFPCLRNGIPKGVAMVISFFISAVFHELCIAVPCRLFKFWAFLGIMFQIPLVILTNFLQNKFKNSNVGNMTFWCFFCIVGQPMCVLLYYHDVMNRNGSSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4157" stop="4167"/>
                    <exon start="4244" stop="4628"/>
                    <exon start="6007" stop="6087"/>
                    <exon start="6796" stop="6834"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIRLDTMTINPESITSSSDGNNNLRRRRSGGGGGDRSVNDVTELDSSSVDASSSSDDVTSDVMDGSGNGGLDRVSEAVSTTIGKISDGDGIQEEQRKANETTPLKYVYRASAPAHRRNKESPLSSAAIFKQSHAGLLNLCIVVLIAVNSRLIIENLMKRVLGVHVALTIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3992" e_stop="4167"/>
            <exon e_start="4244" e_stop="4628"/>
            <exon e_start="6007" e_stop="6087"/>
            <exon e_start="6847" e_stop="6920"/>
            <exon e_start="7003" e_stop="7078"/>
            <exon e_start="7290" e_stop="7357"/>
            <exon e_start="8130" e_stop="8253"/>
            <exon e_start="8435" e_stop="8521"/>
            <exon e_start="9249" e_stop="9317"/>
            <exon e_start="9401" e_stop="9537"/>
            <exon e_start="10236" e_stop="10317"/>
            <exon e_start="10441" e_stop="10461"/>
            <exon e_start="10631" e_stop="10693"/>
            <exon e_start="11672" e_stop="11719"/>
            <exon e_start="11852" e_stop="11914"/>
            <exon e_start="12085" e_stop="12138"/>
            <exon e_start="12232" e_stop="12626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.969" e_score="0.986"/>
          <exon-intron don_prob="0.991" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.761" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.764" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.245" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.609" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.099" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3992" e_stop="4167" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.969">
            <gDNA_intron_boundary i_start="4168" i_stop="4243" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4244" e_stop="4628" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="4629" i_stop="6006" i_length="1378"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6007" e_stop="6087" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.881">
            <gDNA_intron_boundary i_start="6088" i_stop="6846" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="6847" e_stop="6920" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.825" acc_prob="0.969">
            <gDNA_intron_boundary i_start="6921" i_stop="7002" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7003" e_stop="7078" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.906">
            <gDNA_intron_boundary i_start="7079" i_stop="7289" i_length="211"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7290" e_stop="7357" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.899" acc_prob="0.926">
            <gDNA_intron_boundary i_start="7358" i_stop="8129" i_length="772"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8130" e_stop="8253" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.761">
            <gDNA_intron_boundary i_start="8254" i_stop="8434" i_length="181"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8435" e_stop="8521" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.883" acc_prob="0.000">
            <gDNA_intron_boundary i_start="8522" i_stop="9248" i_length="727"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="9249" e_stop="9317" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.764">
            <gDNA_intron_boundary i_start="9318" i_stop="9400" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9401" e_stop="9537" e_length="137"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.669">
            <gDNA_intron_boundary i_start="9538" i_stop="10235" i_length="698"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="10236" e_stop="10317" e_length="82"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.245">
            <gDNA_intron_boundary i_start="10318" i_stop="10440" i_length="123"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="10441" e_stop="10461" e_length="21"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.609">
            <gDNA_intron_boundary i_start="10462" i_stop="10630" i_length="169"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="10631" e_stop="10693" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10694" i_stop="11671" i_length="978"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="11672" e_stop="11719" e_length="48"/>
          </exon>
          <intron i_serial="14" don_prob="0.991" acc_prob="0.099">
            <gDNA_intron_boundary i_start="11720" i_stop="11851" i_length="132"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="11852" e_stop="11914" e_length="63"/>
          </exon>
          <intron i_serial="15" don_prob="0.937" acc_prob="0.959">
            <gDNA_intron_boundary i_start="11915" i_stop="12084" i_length="170"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="12085" e_stop="12138" e_length="54"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="12139" i_stop="12231" i_length="93"/>
          </intron>
          <exon e_serial="17" e_score="0.922">
            <gDNA_exon_boundary e_start="12232" e_stop="12626" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3992" stop="4167"/>
              <exon start="4244" stop="4461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4024" stop="4167"/>
              <exon start="4244" stop="4628"/>
              <exon start="6007" stop="6087"/>
              <exon start="6847" stop="6920"/>
              <exon start="7003" stop="7041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4110" stop="4167"/>
              <exon start="4244" stop="4628"/>
              <exon start="6007" stop="6085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6905" stop="6920"/>
              <exon start="7003" stop="7078"/>
              <exon start="7290" stop="7357"/>
              <exon start="8130" stop="8253"/>
              <exon start="8435" stop="8521"/>
              <exon start="9249" stop="9317"/>
              <exon start="9401" stop="9537"/>
              <exon start="10236" stop="10317"/>
              <exon start="10441" stop="10461"/>
              <exon start="10631" stop="10660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6905" stop="6920"/>
              <exon start="7003" stop="7078"/>
              <exon start="7290" stop="7357"/>
              <exon start="8130" stop="8253"/>
              <exon start="8435" stop="8521"/>
              <exon start="9249" stop="9317"/>
              <exon start="9401" stop="9515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9502" stop="9537"/>
              <exon start="10236" stop="10317"/>
              <exon start="10441" stop="10461"/>
              <exon start="10631" stop="10693"/>
              <exon start="11672" stop="11719"/>
              <exon start="11852" stop="11914"/>
              <exon start="12085" stop="12138"/>
              <exon start="12232" stop="12571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11672" stop="11719"/>
              <exon start="11852" stop="11914"/>
              <exon start="12085" stop="12138"/>
              <exon start="12232" stop="12626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693950" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGAGATACTTGTTCTGGATTTTCGTTGATAAAGAAACTTCTAAACGGCTATGGTGTGAATTCAACAAACAAATAAACAAATCCTTCTGCAAATCTCAATTTTCATGGCGGCGGGAAGCTCTACACGTATTTTCCTTTGTATACTTCAACAATTGCTTTTATAGAGTCAAATTCG : ACTTGATACGATGACGATCAATCCGGAGAGTATTACATCGTCAAGCGACGGCAATAACAACCTCCGAAGGCGGCGTAGCGGCGGCGGCGGCGGTGATAGATCTGTGAATGATGTGACGGAGTTGGATTCGAGCTCTGTGGATGCTTCGAGTAGCTCGGATGATGTAACGAGTGACGTCATGGATGGAAGTGGAAACGGAGGATTGGATAGGGTGAGTGAGGCTGTGAGTACGACGATTGGGAAGATTAGTGATGGAGATGGAATTCAGGAGGAGCAGAGGAAAGCGAATGAAACGACGCCGTTGAAGTATGTTTATAGAGCGTCGGCACCGGCTCACCGGCGGAACAAGGAAAGTCCTCTTAGTTCGGCCGCTATTTTCAAACAG : AGTCATGCTGGCTTACTCAATCTCTGTATAGTGGTGCTTATTGCCGTAAACAGCAGGCTGATTATTGAGAATTTGATGAAG : TATGGCTTGTTAATTGGGTCAGGCTTCTGGAGTAGTTCAACATCAGTAAGAGATTGGCCACTTCTGATGTGCTG : TCTTAGTCTTCCGATTTTCCCTCTTGCTGCTTTTCTTGTCGAGAAAATGGCACAGAAGAAGTATATGACTGAACAT : GTAGTTGTCACTCTTCACATAATTATAACGACAGCTTCCATTTTGTATCCAGTTCTGGTCATCCTCAG : GTGTGATTCTGCTTTTCTATCGGGTGTCACACTGATGATGTTTGCTTGCATTGTGTGGATGAAACTAGTTTCTTATGCACATACAAATTATGATATGAGACAGCTTGCAAAGTCTGTGAATGAG : GGTGAGAATTCCGAAATCAACTACTCTTACAATGTTAGTTTCGAGAGTTTGGCTTACTTCATGGTTGCTCCAACTTTATGCTATCAG : GGTTGGCTGGCCCGCCAACTCATCAAGCTGGTAATTTTTACAGGATTAATGGGATTTATCATTGAGCAG : TATATTAACCCGATTGTGCGAAGCTCACGACATCCATTTGAAGGAAACCTTTTATACGCCATCGAGAGGGTATTGAAGCTTTCAGTTCCAATTTTATATGTCTGGCTCTGCATGTTCTACAGCCTCTTTCATCTTTG : GTTAAATATACTTGCGGAAGTTCTGCGATTTGGGGATCGTGAGTTCTATAAAGATTGGTGGAACGCAAAAACAATTGATGAG : TATTGGAGACTTTGGAATATG : CCTGTACATAAGTGGATGGTTCGTCACATCTATTTCCCATGCTTAAGAAATGGCATACCTAAG : GGAGTTGCAATGGTGATCTCTTTCTTTATATCTGCTGTTTTCCATGAG : CTGTGTATTGCTGTTCCTTGTCGGCTATTCAAGTTTTGGGCATTCCTTGGAATCATGTTTCAG : ATTCCCTTGGTCATACTAACGAACTTCCTGCAAAACAAGTTCAAAAACTCGAAT : GTGGGCAACATGACATTCTGGTGCTTTTTCTGCATTGTTGGTCAACCAATGTGTGTGCTTCTGTATTACCATGATGTGATGAATAGAAATGGTAGCTCAAGTTAAAGCTTCATCGTCGATCATTTTGTTGGACCGCGACTCACTAGTGAGTATCGCAGTTTTGAACTATCTGATGCTTTACTTATATGCTTGAAATGGAGAAAATTCTTTTCTAAAATTTGACACCAAGGAATTGAACAGAATTGTTGCTTTGTATTATATCTTTCTTTTGATATTTAAGAAATGTATATCATTTTTTGTTGAGGTAAAATGTAATAAGCTCAAATTAGTGATAGTGTTCTAATTTCGAATTTTCCCTATTTACTATTTGACATGCATTATCGTTATATACATTA</gDNA_template>
            <first_frame> H  E  I  L  V  L  D  F  R  *  *  R  N  F  *  T  A  M  V  *  I  Q  Q  T  N  K  Q  I  L  L  Q  I  S  I  F  M  A  A  G  S  S  T  R  I  F  L  C  I  L  Q  Q  L  L  L  *  S  Q  I  R :   L  D  T  M  T  I  N  P  E  S  I  T  S  S  S  D  G  N  N  N  L  R  R  R  R  S  G  G  G  G  G  D  R  S  V  N  D  V  T  E  L  D  S  S  S  V  D  A  S  S  S  S  D  D  V  T  S  D  V  M  D  G  S  G  N  G  G  L  D  R  V  S  E  A  V  S  T  T  I  G  K  I  S  D  G  D  G  I  Q  E  E  Q  R  K  A  N  E  T  T  P  L  K  Y  V  Y  R  A  S  A  P  A  H  R  R  N  K  E  S  P  L  S  S  A  A  I  F  K  Q  :  S  H  A  G  L  L  N  L  C  I  V  V  L  I  A  V  N  S  R  L  I  I  E  N  L  M  K  :  Y  G  L  L  I  G  S  G  F  W  S  S  S  T  S  V  R  D  W  P  L  L  M  C  C :   L  S  L  P  I  F  P  L  A  A  F  L  V  E  K  M  A  Q  K  K  Y  M  T  E  H  :  V  V  V  T  L  H  I  I  I  T  T  A  S  I  L  Y  P  V  L  V  I  L  R :   C  D  S  A  F  L  S  G  V  T  L  M  M  F  A  C  I  V  W  M  K  L  V  S  Y  A  H  T  N  Y  D  M  R  Q  L  A  K  S  V  N  E  :  G  E  N  S  E  I  N  Y  S  Y  N  V  S  F  E  S  L  A  Y  F  M  V  A  P  T  L  C  Y  Q  :  G  W  L  A  R  Q  L  I  K  L  V  I  F  T  G  L  M  G  F  I  I  E  Q  :  Y  I  N  P  I  V  R  S  S  R  H  P  F  E  G  N  L  L  Y  A  I  E  R  V  L  K  L  S  V  P  I  L  Y  V  W  L  C  M  F  Y  S  L  F  H  L  W :   L  N  I  L  A  E  V  L  R  F  G  D  R  E  F  Y  K  D  W  W  N  A  K  T  I  D  E  :  Y  W  R  L  W  N  M  :  P  V  H  K  W  M  V  R  H  I  Y  F  P  C  L  R  N  G  I  P  K  :  G  V  A  M  V  I  S  F  F  I  S  A  V  F  H  E  :  L  C  I  A  V  P  C  R  L  F  K  F  W  A  F  L  G  I  M  F  Q  :  I  P  L  V  I  L  T  N  F  L  Q  N  K  F  K  N  S  N  :  V  G  N  M  T  F  W  C  F  F  C  I  V  G  Q  P  M  C  V  L  L  Y  Y  H  D  V  M  N  R  N  G  S  S  S  *  S  F  I  V  D  H  F  V  G  P  R  L  T  S  E  Y  R  S  F  E  L  S  D  A  L  L  I  C  L  K  W  R  K  F  F  S  K  I  *  H  Q  G  I  E  Q  N  C  C  F  V  L  Y  L  S  F  D  I  *  E  M  Y  I  I  F  C  *  G  K  M  *  *  A  Q  I  S  D  S  V  L  I  S  N  F  P  Y  L  L  F  D  M  H  Y  R  Y  I  H   </first_frame>
            <second_frame>  T  R  Y  L  F  W  I  F  V  D  K  E  T  S  K  R  L  W  C  E  F  N  K  Q  I  N  K  S  F  C  K  S  Q  F  S  W  R  R  E  A  L  H  V  F  S  F  V  Y  F  N  N  C  F  Y  R  V  K  F   : D  L  I  R  *  R  S  I  R  R  V  L  H  R  Q  A  T  A  I  T  T  S  E  G  G  V  A  A  A  A  A  V  I  D  L  *  M  M  *  R  S  W  I  R  A  L  W  M  L  R  V  A  R  M  M  *  R  V  T  S  W  M  E  V  E  T  E  D  W  I  G  *  V  R  L  *  V  R  R  L  G  R  L  V  M  E  M  E  F  R  R  S  R  G  K  R  M  K  R  R  R  *  S  M  F  I  E  R  R  H  R  L  T  G  G  T  R  K  V  L  L  V  R  P  L  F  S  N  R :   V  M  L  A  Y  S  I  S  V  *  W  C  L  L  P  *  T  A  G  *  L  L  R  I  *  *  S :   M  A  C  *  L  G  Q  A  S  G  V  V  Q  H  Q  *  E  I  G  H  F  *  C  A   : V  L  V  F  R  F  S  L  L  L  L  F  L  S  R  K  W  H  R  R  S  I  *  L  N  M :   *  L  S  L  F  T  *  L  *  R  Q  L  P  F  C  I  Q  F  W  S  S  S   : G  V  I  L  L  F  Y  R  V  S  H  *  *  C  L  L  A  L  C  G  *  N  *  F  L  M  H  I  Q  I  M  I  *  D  S  L  Q  S  L  *  M  R :   V  R  I  P  K  S  T  T  L  T  M  L  V  S  R  V  W  L  T  S  W  L  L  Q  L  Y  A  I  R :   V  G  W  P  A  N  S  S  S  W  *  F  L  Q  D  *  W  D  L  S  L  S  S :   I  L  T  R  L  C  E  A  H  D  I  H  L  K  E  T  F  Y  T  P  S  R  G  Y  *  S  F  Q  F  Q  F  Y  M  S  G  S  A  C  S  T  A  S  F  I  F   : G  *  I  Y  L  R  K  F  C  D  L  G  I  V  S  S  I  K  I  G  G  T  Q  K  Q  L  M  S :   I  G  D  F  G  I  C :   L  Y  I  S  G  W  F  V  T  S  I  S  H  A  *  E  M  A  Y  L  R :   E  L  Q  W  *  S  L  S  L  Y  L  L  F  S  M  S :   C  V  L  L  F  L  V  G  Y  S  S  F  G  H  S  L  E  S  C  F  R :   F  P  W  S  Y  *  R  T  S  C  K  T  S  S  K  T  R  M :   W  A  T  *  H  S  G  A  F  S  A  L  L  V  N  Q  C  V  C  F  C  I  T  M  M  *  *  I  E  M  V  A  Q  V  K  A  S  S  S  I  I  L  L  D  R  D  S  L  V  S  I  A  V  L  N  Y  L  M  L  Y  L  Y  A  *  N  G  E  N  S  F  L  K  F  D  T  K  E  L  N  R  I  V  A  L  Y  Y  I  F  L  L  I  F  K  K  C  I  S  F  F  V  E  V  K  C  N  K  L  K  L  V  I  V  F  *  F  R  I  F  P  I  Y  Y  L  T  C  I  I  V  I  Y  I  </second_frame>
            <third_frame>   R  D  T  C  S  G  F  S  L  I  K  K  L  L  N  G  Y  G  V  N  S  T  N  K  *  T  N  P  S  A  N  L  N  F  H  G  G  G  K  L  Y  T  Y  F  P  L  Y  T  S  T  I  A  F  I  E  S  N  S  :  T  *  Y  D  D  D  Q  S  G  E  Y  Y  I  V  K  R  R  Q  *  Q  P  P  K  A  A  *  R  R  R  R  R  *  *  I  C  E  *  C  D  G  V  G  F  E  L  C  G  C  F  E  *  L  G  *  C  N  E  *  R  H  G  W  K  W  K  R  R  I  G  *  G  E  *  G  C  E  Y  D  D  W  E  D  *  *  W  R  W  N  S  G  G  A  E  E  S  E  *  N  D  A  V  E  V  C  L  *  S  V  G  T  G  S  P  A  E  Q  G  K  S  S  *  F  G  R  Y  F  Q  T   : E  S  C  W  L  T  Q  S  L  Y  S  G  A  Y  C  R  K  Q  Q  A  D  Y  *  E  F  D  E   : V  W  L  V  N  W  V  R  L  L  E  *  F  N  I  S  K  R  L  A  T  S  D  V  L  :  S  *  S  S  D  F  P  S  C  C  F  S  C  R  E  N  G  T  E  E  V  Y  D  *  T   : C  S  C  H  S  S  H  N  Y  N  D  S  F  H  F  V  S  S  S  G  H  P  Q  :  V  *  F  C  F  S  I  G  C  H  T  D  D  V  C  L  H  C  V  D  E  T  S  F  L  C  T  Y  K  L  *  Y  E  T  A  C  K  V  C  E  *   : G  *  E  F  R  N  Q  L  L  L  Q  C  *  F  R  E  F  G  L  L  H  G  C  S  N  F  M  L  S   : G  L  A  G  P  P  T  H  Q  A  G  N  F  Y  R  I  N  G  I  Y  H  *  A   : V  Y  *  P  D  C  A  K  L  T  T  S  I  *  R  K  P  F  I  R  H  R  E  G  I  E  A  F  S  S  N  F  I  C  L  A  L  H  V  L  Q  P  L  S  S  L  :  V  K  Y  T  C  G  S  S  A  I  W  G  S  *  V  L  *  R  L  V  E  R  K  N  N  *  *   : V  L  E  T  L  E  Y   : A  C  T  *  V  D  G  S  S  H  L  F  P  M  L  K  K  W  H  T  *   : G  S  C  N  G  D  L  F  L  Y  I  C  C  F  P  *   : A  V  Y  C  C  S  L  S  A  I  Q  V  L  G  I  P  W  N  H  V  S   : D  S  L  G  H  T  N  E  L  P  A  K  Q  V  Q  K  L  E   : C  G  Q  H  D  I  L  V  L  F  L  H  C  W  S  T  N  V  C  A  S  V  L  P  *  C  D  E  *  K  W  *  L  K  L  K  L  H  R  R  S  F  C  W  T  A  T  H  *  *  V  S  Q  F  *  T  I  *  C  F  T  Y  M  L  E  M  E  K  I  L  F  *  N  L  T  P  R  N  *  T  E  L  L  L  C  I  I  S  F  F  *  Y  L  R  N  V  Y  H  F  L  L  R  *  N  V  I  S  S  N  *  *  *  C  S  N  F  E  F  S  L  F  T  I  *  H  A  L  S  L  Y  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4157" stop="4167"/>
                    <exon start="4244" stop="4628"/>
                    <exon start="6007" stop="6087"/>
                    <exon start="6847" stop="6920"/>
                    <exon start="7003" stop="7078"/>
                    <exon start="7290" stop="7357"/>
                    <exon start="8130" stop="8253"/>
                    <exon start="8435" stop="8521"/>
                    <exon start="9249" stop="9317"/>
                    <exon start="9401" stop="9537"/>
                    <exon start="10236" stop="10317"/>
                    <exon start="10441" stop="10461"/>
                    <exon start="10631" stop="10693"/>
                    <exon start="11672" stop="11719"/>
                    <exon start="11852" stop="11914"/>
                    <exon start="12085" stop="12138"/>
                    <exon start="12232" stop="12336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1545</number_coding_nucleotides>
                  <number_encoded_amino_acids>515</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIRLDTMTINPESITSSSDGNNNLRRRRSGGGGGDRSVNDVTELDSSSVDASSSSDDVTSDVMDGSGNGGLDRVSEAVSTTIGKISDGDGIQEEQRKANETTPLKYVYRASAPAHRRNKESPLSSAAIFKQSHAGLLNLCIVVLIAVNSRLIIENLMKYGLLIGSGFWSSSTSVRDWPLLMCCLSLPIFPLAAFLVEKMAQKKYMTEHVVVTLHIIITTASILYPVLVILRCDSAFLSGVTLMMFACIVWMKLVSYAHTNYDMRQLAKSVNEGENSEINYSYNVSFESLAYFMVAPTLCYQGWLARQLIKLVIFTGLMGFIIEQYINPIVRSSRHPFEGNLLYAIERVLKLSVPILYVWLCMFYSLFHLWLNILAEVLRFGDREFYKDWWNAKTIDEYWRLWNMPVHKWMVRHIYFPCLRNGIPKGVAMVISFFISAVFHELCIAVPCRLFKFWAFLGIMFQIPLVILTNFLQNKFKNSNVGNMTFWCFFCIVGQPMCVLLYYHDVMNRNGSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18499" PGL_stop="15292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18499" e_stop="18432"/>
            <exon e_start="17237" e_stop="16839"/>
            <exon e_start="16243" e_stop="16062"/>
            <exon e_start="15961" e_stop="15873"/>
            <exon e_start="15780" e_stop="15693"/>
            <exon e_start="15587" e_stop="15292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.731" acc_prob="0.989" e_score="0.985"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.897" e_score="0.995"/>
          <exon-intron don_prob="0.946" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.785" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="18499" e_stop="18432" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.731" acc_prob="0.989">
            <gDNA_intron_boundary i_start="18431" i_stop="17238" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17237" e_stop="16839" e_length="399"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16838" i_stop="16244" i_length="595"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="16243" e_stop="16062" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.897">
            <gDNA_intron_boundary i_start="16061" i_stop="15962" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15961" e_stop="15873" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.994">
            <gDNA_intron_boundary i_start="15872" i_stop="15781" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15780" e_stop="15693" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.785" acc_prob="0.969">
            <gDNA_intron_boundary i_start="15692" i_stop="15588" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="15587" e_stop="15292" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18499" stop="18432"/>
              <exon start="17237" stop="16839"/>
              <exon start="16243" stop="16062"/>
              <exon start="15961" stop="15875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17135" stop="16839"/>
              <exon start="16243" stop="16062"/>
              <exon start="15961" stop="15873"/>
              <exon start="15780" stop="15693"/>
              <exon start="15587" stop="15537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17134" stop="16839"/>
              <exon start="16243" stop="16062"/>
              <exon start="15961" stop="15925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16910" stop="16839"/>
              <exon start="16243" stop="16062"/>
              <exon start="15961" stop="15873"/>
              <exon start="15780" stop="15693"/>
              <exon start="15587" stop="15292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTGAAGAAAAAAAAAGGGTTGGGATTTTATTTTCTCATCTTTACAACTTTTTGTGATATTTGAG : GTTATAAGGCTTTTTTAGTATCTTGCTAAAAAGAACTTGGGAGATGACTGTTCGATCGAATAGCTTTAAAGGAACACATTTGGAAACTATTATACAATCGAATAATGAAGTCGATAAGATGACAAGGAAGAATTCGATAAATTTAAGGAACTGTGATCCAAAGAAACTGATGTTAGAGACCACATTATCATTCAAGAATCTGGTTCAAGACTTAGATATATCAGAATGGAACGAAAAAAAGACGAGAGCAACAGTTTCATTACCCGAGCCTTCGATTCTGTTTTCTCCACGACCTGTTAGTGAGCTTGATGCTGCTGCTGTTAAGCTTCAGAAAGTGTATAAGAGTTATAGGACAAGAAGAAATCTTGCAGATTGTGCTGTTGTGGTTGAAGAACTATG : GTGGAAGGCTTTGGATTTCGCAGCTCTCAAACGGAGTTCTGTTTCGTTCTTCAACGTGGAGAAACCGGAAACTGCTGTATCGCGGTGGGCTAGAGCACGTACACGAGCTGCCAAAGTTGGTAAAGGATTGTCAAAAGATGAAAAAAGCTCAGAAACTTGCTCTGCAGCATTGGCTAGAAGCT : ATTGATCCACGACACCGGTATGGTCACAACTTACACTTCTACTACGATATATGGTTCGAAAGTGAAAGCTCTCAACCTTTCTTCTACTG : GTTGGATGTTGGAGACGGGAAAGAGATAAATCTCGAGAAGTGTCCTAGGTTCAATCTGCAGCATCAATGCATCAAGTATCTAGGACCT : AAAGAACGTGAATCGTATGAAGTAGTTATTCAGGACGGGAAACTTGTCTATAAACAAAACGGTGTCTTTGTGGAGACAGTAGAGGGTTCAAAATGGATCTTTGTTCTTAGCACAACAAGAACATTGTACGTAGGAAAAAAGAAGAAAGGTGTGTTTCAACACTCGAGTTTCCTATCGGGTGGTGCAACTACTGCTGCTGGTAGACTCGTTGCTCATGGTGGCGTTTTGAAGGCTATTTGGCCATACAGCGGACACTATCACCCCACGGAAGAGAACTTCCGGGAATTCATTAGTTT</gDNA_template>
            <first_frame> S  F  E  E  K  K  R  V  G  I  L  F  S  H  L  Y  N  F  L  *  Y  L  R :   L  *  G  F  F  S  I  L  L  K  R  T  W  E  M  T  V  R  S  N  S  F  K  G  T  H  L  E  T  I  I  Q  S  N  N  E  V  D  K  M  T  R  K  N  S  I  N  L  R  N  C  D  P  K  K  L  M  L  E  T  T  L  S  F  K  N  L  V  Q  D  L  D  I  S  E  W  N  E  K  K  T  R  A  T  V  S  L  P  E  P  S  I  L  F  S  P  R  P  V  S  E  L  D  A  A  A  V  K  L  Q  K  V  Y  K  S  Y  R  T  R  R  N  L  A  D  C  A  V  V  V  E  E  L  W :   W  K  A  L  D  F  A  A  L  K  R  S  S  V  S  F  F  N  V  E  K  P  E  T  A  V  S  R  W  A  R  A  R  T  R  A  A  K  V  G  K  G  L  S  K  D  E  K  S  S  E  T  C  S  A  A  L  A  R  S   : Y  *  S  T  T  P  V  W  S  Q  L  T  L  L  L  R  Y  M  V  R  K  *  K  L  S  T  F  L  L  L  :  V  G  C  W  R  R  E  R  D  K  S  R  E  V  S  *  V  Q  S  A  A  S  M  H  Q  V  S  R  T   : *  R  T  *  I  V  *  S  S  Y  S  G  R  E  T  C  L  *  T  K  R  C  L  C  G  D  S  R  G  F  K  M  D  L  C  S  *  H  N  K  N  I  V  R  R  K  K  E  E  R  C  V  S  T  L  E  F  P  I  G  W  C  N  Y  C  C  W  *  T  R  C  S  W  W  R  F  E  G  Y  L  A  I  Q  R  T  L  S  P  H  G  R  E  L  P  G  I  H  *  F </first_frame>
            <second_frame>  H  L  K  K  K  K  G  L  G  F  Y  F  L  I  F  T  T  F  C  D  I  *   : G  Y  K  A  F  L  V  S  C  *  K  E  L  G  R  *  L  F  D  R  I  A  L  K  E  H  I  W  K  L  L  Y  N  R  I  M  K  S  I  R  *  Q  G  R  I  R  *  I  *  G  T  V  I  Q  R  N  *  C  *  R  P  H  Y  H  S  R  I  W  F  K  T  *  I  Y  Q  N  G  T  K  K  R  R  E  Q  Q  F  H  Y  P  S  L  R  F  C  F  L  H  D  L  L  V  S  L  M  L  L  L  L  S  F  R  K  C  I  R  V  I  G  Q  E  E  I  L  Q  I  V  L  L  W  L  K  N  Y   : G  G  R  L  W  I  S  Q  L  S  N  G  V  L  F  R  S  S  T  W  R  N  R  K  L  L  Y  R  G  G  L  E  H  V  H  E  L  P  K  L  V  K  D  C  Q  K  M  K  K  A  Q  K  L  A  L  Q  H  W  L  E  A  :  I  D  P  R  H  R  Y  G  H  N  L  H  F  Y  Y  D  I  W  F  E  S  E  S  S  Q  P  F  F  Y  W :   L  D  V  G  D  G  K  E  I  N  L  E  K  C  P  R  F  N  L  Q  H  Q  C  I  K  Y  L  G  P  :  K  E  R  E  S  Y  E  V  V  I  Q  D  G  K  L  V  Y  K  Q  N  G  V  F  V  E  T  V  E  G  S  K  W  I  F  V  L  S  T  T  R  T  L  Y  V  G  K  K  K  K  G  V  F  Q  H  S  S  F  L  S  G  G  A  T  T  A  A  G  R  L  V  A  H  G  G  V  L  K  A  I  W  P  Y  S  G  H  Y  H  P  T  E  E  N  F  R  E  F  I  S   </second_frame>
            <third_frame>   I  *  R  K  K  K  G  W  D  F  I  F  S  S  L  Q  L  F  V  I  F  E  :  V  I  R  L  F  *  Y  L  A  K  K  N  L  G  D  D  C  S  I  E  *  L  *  R  N  T  F  G  N  Y  Y  T  I  E  *  *  S  R  *  D  D  K  E  E  F  D  K  F  K  E  L  *  S  K  E  T  D  V  R  D  H  I  I  I  Q  E  S  G  S  R  L  R  Y  I  R  M  E  R  K  K  D  E  S  N  S  F  I  T  R  A  F  D  S  V  F  S  T  T  C  *  *  A  *  C  C  C  C  *  A  S  E  S  V  *  E  L  *  D  K  K  K  S  C  R  L  C  C  C  G  *  R  T  M  :  V  E  G  F  G  F  R  S  S  Q  T  E  F  C  F  V  L  Q  R  G  E  T  G  N  C  C  I  A  V  G  *  S  T  Y  T  S  C  Q  S  W  *  R  I  V  K  R  *  K  K  L  R  N  L  L  C  S  I  G  *  K  L :   L  I  H  D  T  G  M  V  T  T  Y  T  S  T  T  I  Y  G  S  K  V  K  A  L  N  L  S  S  T   : G  W  M  L  E  T  G  K  R  *  I  S  R  S  V  L  G  S  I  C  S  I  N  A  S  S  I  *  D  L :   K  N  V  N  R  M  K  *  L  F  R  T  G  N  L  S  I  N  K  T  V  S  L  W  R  Q  *  R  V  Q  N  G  S  L  F  L  A  Q  Q  E  H  C  T  *  E  K  R  R  K  V  C  F  N  T  R  V  S  Y  R  V  V  Q  L  L  L  L  V  D  S  L  L  M  V  A  F  *  R  L  F  G  H  T  A  D  T  I  T  P  R  K  R  T  S  G  N  S  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17022" stop="16839"/>
                    <exon start="16243" stop="16062"/>
                    <exon start="15961" stop="15873"/>
                    <exon start="15780" stop="15693"/>
                    <exon start="15587" stop="15294"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYQNGTKKRREQQFHYPSLRFCFLHDLLVSLMLLLLSFRKCIRVIGQEEILQIVLLWLKNYGGRLWISQLSNGVLFRSSTWRNRKLLYRGGLEHVHELPKLVKDCQKMKKAQKLALQHWLEAIDPRHRYGHNLHFYYDIWFESESSQPFFYWLDVGDGKEINLEKCPRFNLQHQCIKYLGPKERESYEVVIQDGKLVYKQNGVFVETVEGSKWIFVLSTTRTLYVGKKKKGVFQHSSFLSGGATTAAGRLVAHGGVLKAIWPYSGHYHPTEENFREFIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="21975" PGL_stop="24682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21975" e_stop="22102"/>
            <exon e_start="22467" e_stop="22730"/>
            <exon e_start="22928" e_stop="23198"/>
            <exon e_start="24043" e_stop="24682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.721" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="1.000" e_score="0.982"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21975" e_stop="22102" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.721" acc_prob="0.997">
            <gDNA_intron_boundary i_start="22103" i_stop="22466" i_length="364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22467" e_stop="22730" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="22731" i_stop="22927" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="22928" e_stop="23198" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23199" i_stop="24042" i_length="844"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="24043" e_stop="24682" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21975" stop="22102"/>
              <exon start="22467" stop="22706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22042" stop="22102"/>
              <exon start="22467" stop="22730"/>
              <exon start="22928" stop="23198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22043" stop="22102"/>
              <exon start="22467" stop="22704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23049" stop="23198"/>
              <exon start="24043" stop="24440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23082" stop="23198"/>
              <exon start="24043" stop="24447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23152" stop="23198"/>
              <exon start="24043" stop="24660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24318" stop="24682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341509" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAAGGGGAATTAATGACTTGCTCCAAAGATATGAATTCAGAATTGTTTTTTGGAGTTTTAGGAGGTTTGGGACAGTTTGGAATAATAACAAGAGCAAGAATTGTCTTGGATAAAGCACCAACAAGA : GTGAAATGGGTGAGAATGTTATATGATGATTTCTCAAAATTCACAAAAGATCAAGAACATCTTATTTCAATTCATAATAATGGATTGGATTATGTTGAAGGCTCTCTAATGATGGAGCAAAGCTCTCTAAATAATTGGAGATCTTCATTTTATTCACCTTCCAATCAAACCAAAATTGCTTCATTATTATCCAAAAATAAAATCATGTATTGCTTGGAAATAGTGAAGTACTATGATGACCAAAATGCTAATACTATTGATAAG : AGGAGTTGAAGAAGTTGGTAAAAGGATTGAAGTATGTAGGTGGATTTATGTTCAAGAAAGATGTGAGTTTTGTGGAATTTTTGAATAGAGTTAGAAGTGGGGAATTAGAGTTACAATCAAAAGGAATGTGGGATGTTCCACATCCATGGCTCAATTTGTTTGTACCAAAGTCTTCTATCATGCATTTTAATGCTGCTGTTTTTGTGGACATAATCCTCAGACAAAACAAGACAAATGGACCCATACTTGTCTACCCAACAAGTAGGAAAAG : ATGGGATGATAGGATGTCAGCAATAATACCAGAAGAAGAAACATTTTATTGTGTGGGACTTTTACATTCTTCAAGTGGATATAATGAATGCAAAATTTTGGATAATCAAAATGAAGAAATATTAAATTATTGTGATAAAGTTGGCCTCAATATAAAGCAATATCTTCCACATTACAAGACAAAAGAGGATTGGATCAAACATTTTGGTAAAAAATGGAATATTTTTCAACAAAGAAAAGATCTATTTGATCCAAAGATGATTCTATCACCAGGACAAAGAATTTTTAATTAGGTTTTCATCAATAAATAGTACGATATAATGATAGGGATGATAAAAGATGACAAATATTTCGTGAAATTAGTTGAAATGTGTAAAAGTTGGCTCGAACATCAGAATCGTCCTATAAGGCTATAGGGTGGTAAAAGGTGACAGATATTTCGTGAAATCAGTTAAACTATGTAAAAGCTGATTCGAACATCAGAATCGTTAAGGGTAGGAGGGAGGGTTGTAAGTTTTTAATTGTTGGAGTTGATGTATTTTTATTTTATTTTATTTTGGTGTGTTAGAAAGATAAATTAGATGATGTAAAGCTTTTTTAGCTACCATTTAATTATAATATGTGAAGTTTGTTTTTTATAA</gDNA_template>
            <first_frame> V  K  G  N  *  *  L  A  P  K  I  *  I  Q  N  C  F  L  E  F  *  E  V  W  D  S  L  E  *  *  Q  E  Q  E  L  S  W  I  K  H  Q  Q  E :   *  N  G  *  E  C  Y  M  M  I  S  Q  N  S  Q  K  I  K  N  I  L  F  Q  F  I  I  M  D  W  I  M  L  K  A  L  *  *  W  S  K  A  L  *  I  I  G  D  L  H  F  I  H  L  P  I  K  P  K  L  L  H  Y  Y  P  K  I  K  S  C  I  A  W  K  *  *  S  T  M  M  T  K  M  L  I  L  L  I  R :   G  V  E  E  V  G  K  R  I  E  V  C  R  W  I  Y  V  Q  E  R  C  E  F  C  G  I  F  E  *  S  *  K  W  G  I  R  V  T  I  K  R  N  V  G  C  S  T  S  M  A  Q  F  V  C  T  K  V  F  Y  H  A  F  *  C  C  C  F  C  G  H  N  P  Q  T  K  Q  D  K  W  T  H  T  C  L  P  N  K  *  E  K  :  M  G  *  *  D  V  S  N  N  T  R  R  R  N  I  L  L  C  G  T  F  T  F  F  K  W  I  *  *  M  Q  N  F  G  *  S  K  *  R  N  I  K  L  L  *  *  S  W  P  Q  Y  K  A  I  S  S  T  L  Q  D  K  R  G  L  D  Q  T  F  W  *  K  M  E  Y  F  S  T  K  K  R  S  I  *  S  K  D  D  S  I  T  R  T  K  N  F  *  L  G  F  H  Q  *  I  V  R  Y  N  D  R  D  D  K  R  *  Q  I  F  R  E  I  S  *  N  V  *  K  L  A  R  T  S  E  S  S  Y  K  A  I  G  W  *  K  V  T  D  I  S  *  N  Q  L  N  Y  V  K  A  D  S  N  I  R  I  V  K  G  R  R  E  G  C  K  F  L  I  V  G  V  D  V  F  L  F  Y  F  I  L  V  C  *  K  D  K  L  D  D  V  K  L  F  *  L  P  F  N  Y  N  M  *  S  L  F  F  I  </first_frame>
            <second_frame>  *  R  G  I  N  D  L  L  Q  R  Y  E  F  R  I  V  F  W  S  F  R  R  F  G  T  V  W  N  N  N  K  S  K  N  C  L  G  *  S  T  N  K   : S  E  M  G  E  N  V  I  *  *  F  L  K  I  H  K  R  S  R  T  S  Y  F  N  S  *  *  W  I  G  L  C  *  R  L  S  N  D  G  A  K  L  S  K  *  L  E  I  F  I  L  F  T  F  Q  S  N  Q  N  C  F  I  I  I  Q  K  *  N  H  V  L  L  G  N  S  E  V  L  *  *  P  K  C  *  Y  Y  *  *   : E  E  L  K  K  L  V  K  G  L  K  Y  V  G  G  F  M  F  K  K  D  V  S  F  V  E  F  L  N  R  V  R  S  G  E  L  E  L  Q  S  K  G  M  W  D  V  P  H  P  W  L  N  L  F  V  P  K  S  S  I  M  H  F  N  A  A  V  F  V  D  I  I  L  R  Q  N  K  T  N  G  P  I  L  V  Y  P  T  S  R  K  R :   W  D  D  R  M  S  A  I  I  P  E  E  E  T  F  Y  C  V  G  L  L  H  S  S  S  G  Y  N  E  C  K  I  L  D  N  Q  N  E  E  I  L  N  Y  C  D  K  V  G  L  N  I  K  Q  Y  L  P  H  Y  K  T  K  E  D  W  I  K  H  F  G  K  K  W  N  I  F  Q  Q  R  K  D  L  F  D  P  K  M  I  L  S  P  G  Q  R  I  F  N  *  V  F  I  N  K  *  Y  D  I  M  I  G  M  I  K  D  D  K  Y  F  V  K  L  V  E  M  C  K  S  W  L  E  H  Q  N  R  P  I  R  L  *  G  G  K  R  *  Q  I  F  R  E  I  S  *  T  M  *  K  L  I  R  T  S  E  S  L  R  V  G  G  R  V  V  S  F  *  L  L  E  L  M  Y  F  Y  F  I  L  F  W  C  V  R  K  I  N  *  M  M  *  S  F  F  S  Y  H  L  I  I  I  C  E  V  C  F  L  * </second_frame>
            <third_frame>   K  G  E  L  M  T  C  S  K  D  M  N  S  E  L  F  F  G  V  L  G  G  L  G  Q  F  G  I  I  T  R  A  R  I  V  L  D  K  A  P  T  R  :  V  K  W  V  R  M  L  Y  D  D  F  S  K  F  T  K  D  Q  E  H  L  I  S  I  H  N  N  G  L  D  Y  V  E  G  S  L  M  M  E  Q  S  S  L  N  N  W  R  S  S  F  Y  S  P  S  N  Q  T  K  I  A  S  L  L  S  K  N  K  I  M  Y  C  L  E  I  V  K  Y  Y  D  D  Q  N  A  N  T  I  D  K  :  R  S  *  R  S  W  *  K  D  *  S  M  *  V  D  L  C  S  R  K  M  *  V  L  W  N  F  *  I  E  L  E  V  G  N  *  S  Y  N  Q  K  E  C  G  M  F  H  I  H  G  S  I  C  L  Y  Q  S  L  L  S  C  I  L  M  L  L  F  L  W  T  *  S  S  D  K  T  R  Q  M  D  P  Y  L  S  T  Q  Q  V  G  K   : D  G  M  I  G  C  Q  Q  *  Y  Q  K  K  K  H  F  I  V  W  D  F  Y  I  L  Q  V  D  I  M  N  A  K  F  W  I  I  K  M  K  K  Y  *  I  I  V  I  K  L  A  S  I  *  S  N  I  F  H  I  T  R  Q  K  R  I  G  S  N  I  L  V  K  N  G  I  F  F  N  K  E  K  I  Y  L  I  Q  R  *  F  Y  H  Q  D  K  E  F  L  I  R  F  S  S  I  N  S  T  I  *  *  *  G  *  *  K  M  T  N  I  S  *  N  *  L  K  C  V  K  V  G  S  N  I  R  I  V  L  *  G  Y  R  V  V  K  G  D  R  Y  F  V  K  S  V  K  L  C  K  S  *  F  E  H  Q  N  R  *  G  *  E  G  G  L  *  V  F  N  C  W  S  *  C  I  F  I  L  F  Y  F  G  V  L  E  R  *  I  R  *  C  K  A  F  L  A  T  I  *  L  *  Y  V  K  F  V  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22730" stop="23198"/>
                    <exon start="24043" stop="24334"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELKKLVKGLKYVGGFMFKKDVSFVEFLNRVRSGELELQSKGMWDVPHPWLNLFVPKSSIMHFNAAVFVDIILRQNKTNGPILVYPTSRKRWDDRMSAIIPEEETFYCVGLLHSSSGYNECKILDNQNEEILNYCDKVGLNIKQYLPHYKTKEDWIKHFGKKWNIFQQRKDLFDPKMILSPGQRIFN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21977" stop="22102"/>
                    <exon start="22467" stop="22730"/>
                    <exon start="22928" stop="22936"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGELMTCSKDMNSELFFGVLGGLGQFGIITRARIVLDKAPTRVKWVRMLYDDFSKFTKDQEHLISIHNNGLDYVEGSLMMEQSSLNNWRSSFYSPSNQTKIASLLSKNKIMYCLEIVKYYDDQNANTIDKRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24639" PGL_stop="24041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24639" e_stop="24041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24639" e_stop="24041" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24639" stop="24041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGCTTTACATCATCTAATTTATCTTTCTAACACACCAAAATAAAATAAAATAAAAATACATCAACTCCAACAATTAAAAACTTACAACCCTCCCTCCTACCCTTAACGATTCTGATGTTCGAATCAGCTTTTACATAGTTTAACTGATTTCACGAAATATCTGTCACCTTTTACCACCCTATAGCCTTATAGGACGATTCTGATGTTCGAGCCAACTTTTACACATTTCAACTAATTTCACGAAATATTTGTCATCTTTTATCATCCCTATCATTATATCGTACTATTTATTGATGAAAACCTAATTAAAAATTCTTTGTCCTGGTGATAGAATCATCTTTGGATCAAATAGATCTTTTCTTTGTTGAAAAATATTCCATTTTTTACCAAAATGTTTGATCCAATCCTCTTTTGTCTTGTAATGTGGAAGATATTGCTTTATATTGAGGCCAACTTTATCACAATAATTTAATATTTCTTCATTTTGATTATCCAAAATTTTGCATTCATTATATCCACTTGAAGAATGTAAAAGTCCCACACAATAAAATGTTTCTTCTTCTGGTATTATTGCTGACATCCTATCATCCCATCT</gDNA_template>
            <first_frame> K  K  L  Y  I  I  *  F  I  F  L  T  H  Q  N  K  I  K  *  K  Y  I  N  S  N  N  *  K  L  T  T  L  P  P  T  L  N  D  S  D  V  R  I  S  F  Y  I  V  *  L  I  S  R  N  I  C  H  L  L  P  P  Y  S  L  I  G  R  F  *  C  S  S  Q  L  L  H  I  S  T  N  F  T  K  Y  L  S  S  F  I  I  P  I  I  I  S  Y  Y  L  L  M  K  T  *  L  K  I  L  C  P  G  D  R  I  I  F  G  S  N  R  S  F  L  C  *  K  I  F  H  F  L  P  K  C  L  I  Q  S  S  F  V  L  *  C  G  R  Y  C  F  I  L  R  P  T  L  S  Q  *  F  N  I  S  S  F  *  L  S  K  I  L  H  S  L  Y  P  L  E  E  C  K  S  P  T  Q  *  N  V  S  S  S  G  I  I  A  D  I  L  S  S  H   </first_frame>
            <second_frame>  K  S  F  T  S  S  N  L  S  F  *  H  T  K  I  K  *  N  K  N  T  S  T  P  T  I  K  N  L  Q  P  S  L  L  P  L  T  I  L  M  F  E  S  A  F  T  *  F  N  *  F  H  E  I  S  V  T  F  Y  H  P  I  A  L  *  D  D  S  D  V  R  A  N  F  Y  T  F  Q  L  I  S  R  N  I  C  H  L  L  S  S  L  S  L  Y  R  T  I  Y  *  *  K  P  N  *  K  F  F  V  L  V  I  E  S  S  L  D  Q  I  D  L  F  F  V  E  K  Y  S  I  F  Y  Q  N  V  *  S  N  P  L  L  S  C  N  V  E  D  I  A  L  Y  *  G  Q  L  Y  H  N  N  L  I  F  L  H  F  D  Y  P  K  F  C  I  H  Y  I  H  L  K  N  V  K  V  P  H  N  K  M  F  L  L  L  V  L  L  L  T  S  Y  H  P  I  </second_frame>
            <third_frame>   K  A  L  H  H  L  I  Y  L  S  N  T  P  K  *  N  K  I  K  I  H  Q  L  Q  Q  L  K  T  Y  N  P  P  S  Y  P  *  R  F  *  C  S  N  Q  L  L  H  S  L  T  D  F  T  K  Y  L  S  P  F  T  T  L  *  P  Y  R  T  I  L  M  F  E  P  T  F  T  H  F  N  *  F  H  E  I  F  V  I  F  Y  H  P  Y  H  Y  I  V  L  F  I  D  E  N  L  I  K  N  S  L  S  W  *  *  N  H  L  W  I  K  *  I  F  S  L  L  K  N  I  P  F  F  T  K  M  F  D  P  I  L  F  C  L  V  M  W  K  I  L  L  Y  I  E  A  N  F  I  T  I  I  *  Y  F  F  I  L  I  I  Q  N  F  A  F  I  I  S  T  *  R  M  *  K  S  H  T  I  K  C  F  F  F  W  Y  Y  C  *  H  P  I  I  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0216D04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26598" PGL_stop="34915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26598" e_stop="26679"/>
            <exon e_start="27942" e_stop="28215"/>
            <exon e_start="29759" e_stop="29888"/>
            <exon e_start="29986" e_stop="30102"/>
            <exon e_start="30847" e_stop="30964"/>
            <exon e_start="31534" e_stop="31970"/>
            <exon e_start="32094" e_stop="32373"/>
            <exon e_start="33193" e_stop="33286"/>
            <exon e_start="33992" e_stop="34122"/>
            <exon e_start="34286" e_stop="34339"/>
            <exon e_start="34621" e_stop="34877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.533" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.859" acc_prob="0.697" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26598" e_stop="26679" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.935">
            <gDNA_intron_boundary i_start="26680" i_stop="27941" i_length="1262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27942" e_stop="28215" e_length="274"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28216" i_stop="29758" i_length="1543"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29759" e_stop="29888" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="29889" i_stop="29985" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29986" e_stop="30102" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.992">
            <gDNA_intron_boundary i_start="30103" i_stop="30846" i_length="744"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30847" e_stop="30964" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.809">
            <gDNA_intron_boundary i_start="30965" i_stop="31533" i_length="569"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31534" e_stop="31970" e_length="437"/>
          </exon>
          <intron i_serial="6" don_prob="0.533" acc_prob="0.985">
            <gDNA_intron_boundary i_start="31971" i_stop="32093" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="32094" e_stop="32373" e_length="280"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32374" i_stop="33192" i_length="819"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33193" e_stop="33286" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.859" acc_prob="0.697">
            <gDNA_intron_boundary i_start="33287" i_stop="33991" i_length="705"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33992" e_stop="34122" e_length="131"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34123" i_stop="34285" i_length="163"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="34286" e_stop="34339" e_length="54"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34340" i_stop="34620" i_length="281"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="34621" e_stop="34877" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26598" stop="26679"/>
              <exon start="27942" stop="28215"/>
              <exon start="29759" stop="29888"/>
              <exon start="29986" stop="30102"/>
              <exon start="30847" stop="30964"/>
              <exon start="31534" stop="31970"/>
              <exon start="32094" stop="32373"/>
              <exon start="33193" stop="33286"/>
              <exon start="33992" stop="34122"/>
              <exon start="34286" stop="34339"/>
              <exon start="34621" stop="34877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26605" stop="26679"/>
              <exon start="27942" stop="28215"/>
              <exon start="29759" stop="29888"/>
              <exon start="29986" stop="30102"/>
              <exon start="30847" stop="30964"/>
              <exon start="31534" stop="31658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26627" stop="26679"/>
              <exon start="27942" stop="28215"/>
              <exon start="29759" stop="29888"/>
              <exon start="29986" stop="30102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30005" stop="30102"/>
              <exon start="30847" stop="30964"/>
              <exon start="31534" stop="31668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30903" stop="30964"/>
              <exon start="31534" stop="31970"/>
              <exon start="32094" stop="32317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAGCTATGGCTCCTCTCAAAATTCTCCTCTGTGGTGATGTACTCGGCCGTCTCAATCATCTATTCAAACGCGTTTCTTCG : GTGAACAAGGCAGCTGGTCCATTTGATGCTCTTCTTTGCGTAGGCCAATTTTTTCCTGATTCAGTTGAGGGGATTGATGAATTCAATGGCTACATTGAGGGGCGTTCCAAGATTCCGATACCGACCTATTTCATTGGTGATTATGGTGCAGGGTCCCCAAAAATATTGTCAGAAGCATTAAAGGACCCGAGTAACAAAGGGTTTAAGATGGAGGGTTTAAGAGTCTGTGACAATTTGTACTGGTTGAAAGGAAGTGGGAAGTTTAGCCTTAATG : GGTTATCTGTGGCATACTTATCTGGTAGGCGAACTCCAAGTGGAACTCAATTCGGAACATATAGTCAAGATGATGTTGATGCTTTGAGGGCTTTAGCAGAGGATCCAGTAACAGTAGACATCTTTCTTAC : TAATGAGTGGCCCAGTGGAGTAACAAATGGAACGACATCAAAAGCTCCTGTAGAAATTTCTGATTCATCTGGGAGTGATCCCACAGTGTCAGAGTTGGTAACTGAGATTAAGCCTCG : GTATCATGTTGCAGGAACTGTGGGTGTATACTTTGATCGTGAACCATATGCTAACGTTGATGCTCTACACGTAACTCGCTTTTTGGGCTTAGCTCCTGTTGGAAACAAAGATAAACAG : AAATTCATTCATGCGATATCCCCCACTCCAGCATCAACAATGTCGAAAACTGAGCTTAGTGCAAAGCCACCAAACGCTACTTCATGTCCATATACAAATGTTGACAAAGCAGCCCAACCCGATGGAGCCACAAAGAGGCCCGGTGATGGTACTTCTGAGTCACAGTATTGGAGGTATGATGTATCCAAGAAAAAGCAGAAACATGGAGATGGTGGTGGTGACAGACTCTGCTTTAAATTTGCCTCTTCTGGCTCTTGTCCAAGAGGAAACCAGTGCCATTTTAGACATGATGAAGAGGCTTCAGAACAATACTCAAGAGGTGTGTGTTTTGACTTTCTCAACAAGGGGAAATGTGAAAAAGGTCCTGATTGCAACTTCAAGCACAGCTTGCAGGAAGAAGGTGACAGATCAGCATCTGGGACAGCAAGCTCTAATAG : GTCAAGAGAATGCTGGTTTTGTTTGTCAAGCCCAAATGTTGAGTCACATCTCATCACTAGTGTCGGAGAATATTACTACTGTGCACTTGCTAAAGGACCTTTAACACCTGATCATGTGCTGATTATGCCTATTGAACACACACCCAATACGTTATCTCTGCCACTGGAATGTGAAAAGGAACTGGAACGACTTCAAAGCAGCCTCAAAGCTTACTTCAAAAAGCAAGGGAAGGAAGCAGTTTTCTTTGAGTTCGTGCGAGGAAGTCATGCCAATCTCCAG : GTTGTTCCTATTCCCTCGTCCAGGGCATCTGCGGTTCGAGATATTTTTAACTTGGCTGCTGACAAATTGGGATTTAAGCTTTCTATGGTTAAAG : AAGGAAGACAAGCGTTGCGGACACAGTTCGACAGAAGTTGCAGCTTATTTTATGTTGAAGTTCCTGGAGGTGATATTTTGTCACATGTTATTGAGGAGAATGAAAAATTCCCAGCTCAATTTGGTCGTGAG : GTTTTAGCAGGCTTGTTGAATATAGCAGATAGAGCTGATTGGAGAAATTGTAAG : GACGCTGTTGTAACCGCCTAACCGGGCAGCAACAACATTGCTGCAATTTCCATGTATGTAACCCCATGTCCAGTTAGGCTATTGAGGTAGTTTTGTTCATGTATGAGCTTGTGAGTTTGTTTCAACTATTTGAGATAATGTAATACACAATAGTGACAGCTTCTTCTTTTTTTTTTTTCCTGAAGCAATTGTAACTTTATTGTCCACTGAATTGTTTTTTGTTTGTTAAAAATATTTGGATCCTTTATGAATTACAA</gDNA_template>
            <first_frame> L  S  Y  G  S  S  Q  N  S  P  L  W  *  C  T  R  P  S  Q  S  S  I  Q  T  R  F  F   : G  E  Q  G  S  W  S  I  *  C  S  S  L  R  R  P  I  F  S  *  F  S  *  G  D  *  *  I  Q  W  L  H  *  G  A  F  Q  D  S  D  T  D  L  F  H  W  *  L  W  C  R  V  P  K  N  I  V  R  S  I  K  G  P  E  *  Q  R  V  *  D  G  G  F  K  S  L  *  Q  F  V  L  V  E  R  K  W  E  V  *  P  *  W :   V  I  C  G  I  L  I  W  *  A  N  S  K  W  N  S  I  R  N  I  *  S  R  *  C  *  C  F  E  G  F  S  R  G  S  S  N  S  R  H  L  S  Y  :  *  *  V  A  Q  W  S  N  K  W  N  D  I  K  S  S  C  R  N  F  *  F  I  W  E  *  S  H  S  V  R  V  G  N  *  D  *  A  S  :  V  S  C  C  R  N  C  G  C  I  L  *  S  *  T  I  C  *  R  *  C  S  T  R  N  S  L  F  G  L  S  S  C  W  K  Q  R  *  T   : E  I  H  S  C  D  I  P  H  S  S  I  N  N  V  E  N  *  A  *  C  K  A  T  K  R  Y  F  M  S  I  Y  K  C  *  Q  S  S  P  T  R  W  S  H  K  E  A  R  *  W  Y  F  *  V  T  V  L  E  V  *  C  I  Q  E  K  A  E  T  W  R  W  W  W  *  Q  T  L  L  *  I  C  L  F  W  L  L  S  K  R  K  P  V  P  F  *  T  *  *  R  G  F  R  T  I  L  K  R  C  V  F  *  L  S  Q  Q  G  E  M  *  K  R  S  *  L  Q  L  Q  A  Q  L  A  G  R  R  *  Q  I  S  I  W  D  S  K  L  *  *  :  V  K  R  M  L  V  L  F  V  K  P  K  C  *  V  T  S  H  H  *  C  R  R  I  L  L  L  C  T  C  *  R  T  F  N  T  *  S  C  A  D  Y  A  Y  *  T  H  T  Q  Y  V  I  S  A  T  G  M  *  K  G  T  G  T  T  S  K  Q  P  Q  S  L  L  Q  K  A  R  E  G  S  S  F  L  *  V  R  A  R  K  S  C  Q  S  P   : G  C  S  Y  S  L  V  Q  G  I  C  G  S  R  Y  F  *  L  G  C  *  Q  I  G  I  *  A  F  Y  G  *  R :   R  K  T  S  V  A  D  T  V  R  Q  K  L  Q  L  I  L  C  *  S  S  W  R  *  Y  F  V  T  C  Y  *  G  E  *  K  I  P  S  S  I  W  S  *   : G  F  S  R  L  V  E  Y  S  R  *  S  *  L  E  K  L  *   : G  R  C  C  N  R  L  T  G  Q  Q  Q  H  C  C  N  F  H  V  C  N  P  M  S  S  *  A  I  E  V  V  L  F  M  Y  E  L  V  S  L  F  Q  L  F  E  I  M  *  Y  T  I  V  T  A  S  S  F  F  F  F  L  K  Q  L  *  L  Y  C  P  L  N  C  F  L  F  V  K  N  I  W  I  L  Y  E  L  Q </first_frame>
            <second_frame>  S  A  M  A  P  L  K  I  L  L  C  G  D  V  L  G  R  L  N  H  L  F  K  R  V  S  S  :  V  N  K  A  A  G  P  F  D  A  L  L  C  V  G  Q  F  F  P  D  S  V  E  G  I  D  E  F  N  G  Y  I  E  G  R  S  K  I  P  I  P  T  Y  F  I  G  D  Y  G  A  G  S  P  K  I  L  S  E  A  L  K  D  P  S  N  K  G  F  K  M  E  G  L  R  V  C  D  N  L  Y  W  L  K  G  S  G  K  F  S  L  N   : G  L  S  V  A  Y  L  S  G  R  R  T  P  S  G  T  Q  F  G  T  Y  S  Q  D  D  V  D  A  L  R  A  L  A  E  D  P  V  T  V  D  I  F  L  T :   N  E  W  P  S  G  V  T  N  G  T  T  S  K  A  P  V  E  I  S  D  S  S  G  S  D  P  T  V  S  E  L  V  T  E  I  K  P  R :   Y  H  V  A  G  T  V  G  V  Y  F  D  R  E  P  Y  A  N  V  D  A  L  H  V  T  R  F  L  G  L  A  P  V  G  N  K  D  K  Q  :  K  F  I  H  A  I  S  P  T  P  A  S  T  M  S  K  T  E  L  S  A  K  P  P  N  A  T  S  C  P  Y  T  N  V  D  K  A  A  Q  P  D  G  A  T  K  R  P  G  D  G  T  S  E  S  Q  Y  W  R  Y  D  V  S  K  K  K  Q  K  H  G  D  G  G  G  D  R  L  C  F  K  F  A  S  S  G  S  C  P  R  G  N  Q  C  H  F  R  H  D  E  E  A  S  E  Q  Y  S  R  G  V  C  F  D  F  L  N  K  G  K  C  E  K  G  P  D  C  N  F  K  H  S  L  Q  E  E  G  D  R  S  A  S  G  T  A  S  S  N  R :   S  R  E  C  W  F  C  L  S  S  P  N  V  E  S  H  L  I  T  S  V  G  E  Y  Y  Y  C  A  L  A  K  G  P  L  T  P  D  H  V  L  I  M  P  I  E  H  T  P  N  T  L  S  L  P  L  E  C  E  K  E  L  E  R  L  Q  S  S  L  K  A  Y  F  K  K  Q  G  K  E  A  V  F  F  E  F  V  R  G  S  H  A  N  L  Q  :  V  V  P  I  P  S  S  R  A  S  A  V  R  D  I  F  N  L  A  A  D  K  L  G  F  K  L  S  M  V  K   : E  G  R  Q  A  L  R  T  Q  F  D  R  S  C  S  L  F  Y  V  E  V  P  G  G  D  I  L  S  H  V  I  E  E  N  E  K  F  P  A  Q  F  G  R  E  :  V  L  A  G  L  L  N  I  A  D  R  A  D  W  R  N  C  K  :  D  A  V  V  T  A  *  P  G  S  N  N  I  A  A  I  S  M  Y  V  T  P  C  P  V  R  L  L  R  *  F  C  S  C  M  S  L  *  V  C  F  N  Y  L  R  *  C  N  T  Q  *  *  Q  L  L  L  F  F  F  S  *  S  N  C  N  F  I  V  H  *  I  V  F  C  L  L  K  I  F  G  S  F  M  N  Y   </second_frame>
            <third_frame>   Q  L  W  L  L  S  K  F  S  S  V  V  M  Y  S  A  V  S  I  I  Y  S  N  A  F  L  R :   *  T  R  Q  L  V  H  L  M  L  F  F  A  *  A  N  F  F  L  I  Q  L  R  G  L  M  N  S  M  A  T  L  R  G  V  P  R  F  R  Y  R  P  I  S  L  V  I  M  V  Q  G  P  Q  K  Y  C  Q  K  H  *  R  T  R  V  T  K  G  L  R  W  R  V  *  E  S  V  T  I  C  T  G  *  K  E  V  G  S  L  A  L  M  :  G  Y  L  W  H  T  Y  L  V  G  E  L  Q  V  E  L  N  S  E  H  I  V  K  M  M  L  M  L  *  G  L  *  Q  R  I  Q  *  Q  *  T  S  F  L   : L  M  S  G  P  V  E  *  Q  M  E  R  H  Q  K  L  L  *  K  F  L  I  H  L  G  V  I  P  Q  C  Q  S  W  *  L  R  L  S  L   : G  I  M  L  Q  E  L  W  V  Y  T  L  I  V  N  H  M  L  T  L  M  L  Y  T  *  L  A  F  W  A  *  L  L  L  E  T  K  I  N  R :   N  S  F  M  R  Y  P  P  L  Q  H  Q  Q  C  R  K  L  S  L  V  Q  S  H  Q  T  L  L  H  V  H  I  Q  M  L  T  K  Q  P  N  P  M  E  P  Q  R  G  P  V  M  V  L  L  S  H  S  I  G  G  M  M  Y  P  R  K  S  R  N  M  E  M  V  V  V  T  D  S  A  L  N  L  P  L  L  A  L  V  Q  E  E  T  S  A  I  L  D  M  M  K  R  L  Q  N  N  T  Q  E  V  C  V  L  T  F  S  T  R  G  N  V  K  K  V  L  I  A  T  S  S  T  A  C  R  K  K  V  T  D  Q  H  L  G  Q  Q  A  L  I   : G  Q  E  N  A  G  F  V  C  Q  A  Q  M  L  S  H  I  S  S  L  V  S  E  N  I  T  T  V  H  L  L  K  D  L  *  H  L  I  M  C  *  L  C  L  L  N  T  H  P  I  R  Y  L  C  H  W  N  V  K  R  N  W  N  D  F  K  A  A  S  K  L  T  S  K  S  K  G  R  K  Q  F  S  L  S  S  C  E  E  V  M  P  I  S  R :   L  F  L  F  P  R  P  G  H  L  R  F  E  I  F  L  T  W  L  L  T  N  W  D  L  S  F  L  W  L  K  :  K  E  D  K  R  C  G  H  S  S  T  E  V  A  A  Y  F  M  L  K  F  L  E  V  I  F  C  H  M  L  L  R  R  M  K  N  S  Q  L  N  L  V  V  R :   F  *  Q  A  C  *  I  *  Q  I  E  L  I  G  E  I  V  R :   T  L  L  *  P  P  N  R  A  A  T  T  L  L  Q  F  P  C  M  *  P  H  V  Q  L  G  Y  *  G  S  F  V  H  V  *  A  C  E  F  V  S  T  I  *  D  N  V  I  H  N  S  D  S  F  F  F  F  F  F  P  E  A  I  V  T  L  L  S  T  E  L  F  F  V  C  *  K  Y  L  D  P  L  *  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26599" stop="26679"/>
                    <exon start="27942" stop="28215"/>
                    <exon start="29759" stop="29888"/>
                    <exon start="29986" stop="30102"/>
                    <exon start="30847" stop="30964"/>
                    <exon start="31534" stop="31970"/>
                    <exon start="32094" stop="32373"/>
                    <exon start="33193" stop="33286"/>
                    <exon start="33992" stop="34122"/>
                    <exon start="34286" stop="34339"/>
                    <exon start="34621" stop="34641"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1734</number_coding_nucleotides>
                  <number_encoded_amino_acids>578</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAMAPLKILLCGDVLGRLNHLFKRVSSVNKAAGPFDALLCVGQFFPDSVEGIDEFNGYIEGRSKIPIPTYFIGDYGAGSPKILSEALKDPSNKGFKMEGLRVCDNLYWLKGSGKFSLNGLSVAYLSGRRTPSGTQFGTYSQDDVDALRALAEDPVTVDIFLTNEWPSGVTNGTTSKAPVEISDSSGSDPTVSELVTEIKPRYHVAGTVGVYFDREPYANVDALHVTRFLGLAPVGNKDKQKFIHAISPTPASTMSKTELSAKPPNATSCPYTNVDKAAQPDGATKRPGDGTSESQYWRYDVSKKKQKHGDGGGDRLCFKFASSGSCPRGNQCHFRHDEEASEQYSRGVCFDFLNKGKCEKGPDCNFKHSLQEEGDRSASGTASSNRSRECWFCLSSPNVESHLITSVGEYYYCALAKGPLTPDHVLIMPIEHTPNTLSLPLECEKELERLQSSLKAYFKKQGKEAVFFEFVRGSHANLQVVPIPSSRASAVRDIFNLAADKLGFKLSMVKEGRQALRTQFDRSCSLFYVEVPGGDILSHVIEENEKFPAQFGREVLAGLLNIADRADWRNCKDAVVTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33995" e_stop="34122"/>
            <exon e_start="34286" e_stop="34497"/>
            <exon e_start="34621" e_stop="34915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.385" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33995" e_stop="34122" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="34123" i_stop="34285" i_length="163"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34286" e_stop="34497" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="0.385" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34498" i_stop="34620" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="34621" e_stop="34915" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33995" stop="34122"/>
              <exon start="34286" stop="34497"/>
              <exon start="34621" stop="34915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGACAAGCGTTGCGGACACAGTTCGACAGAAGTTGCAGCTTATTTTATGTTGAAGTTCCTGGAGGTGATATTTTGTCACATGTTATTGAGGAGAATGAAAAATTCCCAGCTCAATTTGGTCGTGAG : GTTTTAGCAGGCTTGTTGAATATAGCAGATAGAGCTGATTGGAGAAATTGTAAGGTTAGTAAAGAAGAAGAAACTAAAATGGCTGAGCGATTCAAGAACGGATTTCAAGAATATGATCCAAATCAATAGCATAGCCGAGAAATATGCAACACTATATATCGAGTTCTTTCTCTCGTGTTCTTCATTATATGCAACTTCAACATTTCCTTGAG : GACGCTGTTGTAACCGCCTAACCGGGCAGCAACAACATTGCTGCAATTTCCATGTATGTAACCCCATGTCCAGTTAGGCTATTGAGGTAGTTTTGTTCATGTATGAGCTTGTGAGTTTGTTTCAACTATTTGAGATAATGTAATACACAATAGTGACAGCTTCTTCTTTTTTTTTTTTCCTGAAGCAATTGTAACTTTATTGTCCACTGAATTGTTTTTTGTTTGTTAAAAATATTTGGATCCTTTATGAATTACAACTGTGGGATCTATTATATTATGTTCCAAACTTTAAAGA</gDNA_template>
            <first_frame> E  D  K  R  C  G  H  S  S  T  E  V  A  A  Y  F  M  L  K  F  L  E  V  I  F  C  H  M  L  L  R  R  M  K  N  S  Q  L  N  L  V  V  R :   F  *  Q  A  C  *  I  *  Q  I  E  L  I  G  E  I  V  R  L  V  K  K  K  K  L  K  W  L  S  D  S  R  T  D  F  K  N  M  I  Q  I  N  S  I  A  E  K  Y  A  T  L  Y  I  E  F  F  L  S  C  S  S  L  Y  A  T  S  T  F  P  *   : G  R  C  C  N  R  L  T  G  Q  Q  Q  H  C  C  N  F  H  V  C  N  P  M  S  S  *  A  I  E  V  V  L  F  M  Y  E  L  V  S  L  F  Q  L  F  E  I  M  *  Y  T  I  V  T  A  S  S  F  F  F  F  L  K  Q  L  *  L  Y  C  P  L  N  C  F  L  F  V  K  N  I  W  I  L  Y  E  L  Q  L  W  D  L  L  Y  Y  V  P  N  F  K   </first_frame>
            <second_frame>  K  T  S  V  A  D  T  V  R  Q  K  L  Q  L  I  L  C  *  S  S  W  R  *  Y  F  V  T  C  Y  *  G  E  *  K  I  P  S  S  I  W  S  *   : G  F  S  R  L  V  E  Y  S  R  *  S  *  L  E  K  L  *  G  *  *  R  R  R  N  *  N  G  *  A  I  Q  E  R  I  S  R  I  *  S  K  S  I  A  *  P  R  N  M  Q  H  Y  I  S  S  S  F  S  R  V  L  H  Y  M  Q  L  Q  H  F  L  E  :  D  A  V  V  T  A  *  P  G  S  N  N  I  A  A  I  S  M  Y  V  T  P  C  P  V  R  L  L  R  *  F  C  S  C  M  S  L  *  V  C  F  N  Y  L  R  *  C  N  T  Q  *  *  Q  L  L  L  F  F  F  S  *  S  N  C  N  F  I  V  H  *  I  V  F  C  L  L  K  I  F  G  S  F  M  N  Y  N  C  G  I  Y  Y  I  M  F  Q  T  L  K  </second_frame>
            <third_frame>   R  Q  A  L  R  T  Q  F  D  R  S  C  S  L  F  Y  V  E  V  P  G  G  D  I  L  S  H  V  I  E  E  N  E  K  F  P  A  Q  F  G  R  E  :  V  L  A  G  L  L  N  I  A  D  R  A  D  W  R  N  C  K  V  S  K  E  E  E  T  K  M  A  E  R  F  K  N  G  F  Q  E  Y  D  P  N  Q  *  H  S  R  E  I  C  N  T  I  Y  R  V  L  S  L  V  F  F  I  I  C  N  F  N  I  S  L  R :   T  L  L  *  P  P  N  R  A  A  T  T  L  L  Q  F  P  C  M  *  P  H  V  Q  L  G  Y  *  G  S  F  V  H  V  *  A  C  E  F  V  S  T  I  *  D  N  V  I  H  N  S  D  S  F  F  F  F  F  F  P  E  A  I  V  T  L  L  S  T  E  L  F  F  V  C  *  K  Y  L  D  P  L  *  I  T  T  V  G  S  I  I  L  C  S  K  L  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33997" stop="34122"/>
                    <exon start="34286" stop="34414"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQALRTQFDRSCSLFYVEVPGGDILSHVIEENEKFPAQFGREVLAGLLNIADRADWRNCKVSKEEETKMAERFKNGFQEYDPNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35724" PGL_stop="38529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35724" e_stop="35787"/>
            <exon e_start="35907" e_stop="36013"/>
            <exon e_start="38039" e_stop="38117"/>
            <exon e_start="38195" e_stop="38529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.683" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35724" e_stop="35787" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35788" i_stop="35906" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35907" e_stop="36013" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36014" i_stop="38038" i_length="2025"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38039" e_stop="38117" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.683">
            <gDNA_intron_boundary i_start="38118" i_stop="38194" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="38195" e_stop="38529" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35724" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35727" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35729" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35730" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35732" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35737" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35745" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35783" stop="35787"/>
              <exon start="35907" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35913" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35964" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35972" stop="36013"/>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38039" stop="38117"/>
              <exon start="38195" stop="38484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTTTCAACACTTCGAGTCTACGCGAGATCATCTCATATTCTCTCAAATTTATTGAAGAAATG : GCTCAATCAGCAAAACCGATCTCGAGTCCAGTACCTGATGCGTGGTACCCAACCCTAGCAGTGTTCATGCTTGCAATTGGTCTTGTTGTAACTGCTTCATTTTTCAT : CTATGAAGCTACTGCTCCGAGGAAATACCGTAGTCTTGCAAAGGAGCTTGTAACAGGGACAGTAGCGTCTGTTTTCTTG : GGTTTTGGATCCTTGTTTTTGCTACTTGCTTCCGGCGTATATGTTTGATCCATCTACATGGATAGAGATATGAAGTTTTTTACTAATGTTTCTACATGAACGGTTTTGAGTACTGCTGTGATTTTATATGACTTATCGTTGAAGACCGTATCTATAGAACTGATTATTATCACCTAGTCTAGTCTGAGAATTTATTACTTAATGGCAAGCATTGGAGAACTAGTTGAAAATTTTCTGAGGTACAAGAAAATACTTCTTATGATCAATTACTTTATAGAACAAAAATGAGTGTATCCCTTTGTTATGTTTTTTTCTTGAGCCACGGGTTTATTGGA</gDNA_template>
            <first_frame> G  F  Q  H  F  E  S  T  R  D  H  L  I  F  S  Q  I  Y  *  R  N   : G  S  I  S  K  T  D  L  E  S  S  T  *  C  V  V  P  N  P  S  S  V  H  A  C  N  W  S  C  C  N  C  F  I  F  H  :  L  *  S  Y  C  S  E  E  I  P  *  S  C  K  G  A  C  N  R  D  S  S  V  C  F  L   : G  F  W  I  L  V  F  A  T  C  F  R  R  I  C  L  I  H  L  H  G  *  R  Y  E  V  F  Y  *  C  F  Y  M  N  G  F  E  Y  C  C  D  F  I  *  L  I  V  E  D  R  I  Y  R  T  D  Y  Y  H  L  V  *  S  E  N  L  L  L  N  G  K  H  W  R  T  S  *  K  F  S  E  V  Q  E  N  T  S  Y  D  Q  L  L  Y  R  T  K  M  S  V  S  L  C  Y  V  F  F  L  S  H  G  F  I  G </first_frame>
            <second_frame>  A  F  N  T  S  S  L  R  E  I  I  S  Y  S  L  K  F  I  E  E  M  :  A  Q  S  A  K  P  I  S  S  P  V  P  D  A  W  Y  P  T  L  A  V  F  M  L  A  I  G  L  V  V  T  A  S  F  F  I :   Y  E  A  T  A  P  R  K  Y  R  S  L  A  K  E  L  V  T  G  T  V  A  S  V  F  L  :  G  F  G  S  L  F  L  L  L  A  S  G  V  Y  V  *  S  I  Y  M  D  R  D  M  K  F  F  T  N  V  S  T  *  T  V  L  S  T  A  V  I  L  Y  D  L  S  L  K  T  V  S  I  E  L  I  I  I  T  *  S  S  L  R  I  Y  Y  L  M  A  S  I  G  E  L  V  E  N  F  L  R  Y  K  K  I  L  L  M  I  N  Y  F  I  E  Q  K  *  V  Y  P  F  V  M  F  F  S  *  A  T  G  L  L   </second_frame>
            <third_frame>   L  S  T  L  R  V  Y  A  R  S  S  H  I  L  S  N  L  L  K  K  W :   L  N  Q  Q  N  R  S  R  V  Q  Y  L  M  R  G  T  Q  P  *  Q  C  S  C  L  Q  L  V  L  L  *  L  L  H  F  S   : S  M  K  L  L  L  R  G  N  T  V  V  L  Q  R  S  L  *  Q  G  Q  *  R  L  F  S  W :   V  L  D  P  C  F  C  Y  L  L  P  A  Y  M  F  D  P  S  T  W  I  E  I  *  S  F  L  L  M  F  L  H  E  R  F  *  V  L  L  *  F  Y  M  T  Y  R  *  R  P  Y  L  *  N  *  L  L  S  P  S  L  V  *  E  F  I  T  *  W  Q  A  L  E  N  *  L  K  I  F  *  G  T  R  K  Y  F  L  *  S  I  T  L  *  N  K  N  E  C  I  P  L  L  C  F  F  L  E  P  R  V  Y  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0216D04.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35725" stop="35787"/>
                    <exon start="35907" stop="36013"/>
                    <exon start="38039" stop="38117"/>
                    <exon start="38195" stop="38242"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFNTSSLREIISYSLKFIEEMAQSAKPISSPVPDAWYPTLAVFMLAIGLVVTASFFIYEATAPRKYRSLAKELVTGTVASVFLGFGSLFLLLASGVYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 58 chains have been computed
$ 
$ memory statistics:
$ 81536 bytes spliced alignments in total
$ 40 spliced alignments have been stored
$ 2038 bytes was the average size of a spliced alignment
$ 13408 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2234 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 61 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-24 23:24:04
-->
