<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 05:57:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596715" ref_strand="+" ref_description="SGN-E596715 [40203]">
      <seq>gtttgatcctcntcttcaggctaagattctagatgtaattgatgtttcttatggaggggaaaatggttttaaccaagcaattgagctctctgctgagatcttagccaatgtgaagtttatacaagagaagaaattgataggcaagtactttgaggagattagtcaggacactgggaagtacgtctttggggtggatgatacattaaaagttctggaaatgggtgctattgagacacttattgtgtgggaaaatctggatattatgaggtatgtgctgaaaaatagcggttctggagaaatagttgtcagacacttcaacaaggagcaggaggctgatcagagtaacttccgtgatcctgctacaaatgcagaattagaggttcaggaaaaattgtcactgcttgagtggtttgctaatgagtacaggaaatttggttgtagtctggaatttgtcaccaacaagtcacaagaaggatctcagttttgtcgaggttttggtggtattggaggactcctccgttatcagcttgatgttcgagcttttgatgagctttctgatgatggtgaagtttacgaagactcagactagcaattaccaacttctcaaataccagtgcagaagttgagcgggaaagcctgtactggtgtgcaagggctgtcgccttatttgtccgctcatgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="1084" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="784" g_stop="101" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E596715" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="784" e_stop="101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGTTCAGGAAAAATTGTCACTGCTCGAGTGGTTTGCTAATGAGTACAGGAAATTTGGTTGTAGTCTGGAGTTTGTGACCAACAAGTCACAAGAAGGATCTCAGTTTTGTCGAGGTTTTGGTGGTATTGGAGGACTCCTCCGTTATCAGCTTGATGTTCGAGCTTTTGATGAGCTTTCTGATGATGGTGAAGTTTACGAAGACTCAGACTAGCAATTACCAACTTCTCAAATACCAGTGCAGAAGTTGAGCGGGAAAGCCTGTACTGGTGTGCAAGGGCTGTCGCCTTATTTGTACGCTCATGTTCT</genome_strand>
        <mrna_strand>GTTTGATCCTCNTCTTCAGGCTAAGATTCTAGATGTAATTGATGTTTCTTATGGAGGGGAAAATGGTTTTAACCAAGCAATTGAGCTCTCTGCTGAGATCTTAGCCAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAGTACGTCTTTGGGGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTATGAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAATAGTTGTCAGACACTTCAACAAGGAGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGTTCAGGAAAAATTGTCACTGCTTGAGTGGTTTGCTAATGAGTACAGGAAATTTGGTTGTAGTCTGGAATTTGTCACCAACAAGTCACAAGAAGGATCTCAGTTTTGTCGAGGTTTTGGTGGTATTGGAGGACTCCTCCGTTATCAGCTTGATGTTCGAGCTTTTGATGAGCTTTCTGATGATGGTGAAGTTTACGAAGACTCAGACTAGCAATTACCAACTTCTCAAATACCAGTGCAGAAGTTGAGCGGGAAAGCCTGTACTGGTGTGCAAGGGCTGTCGCCTTATTTGTCCGCTCATGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377654" ref_strand="+" ref_description="SGN-E377654 [TUS-20-M16]">
      <seq>tgatactcgctggttctgctgacttcaaaacagagctcagtcaatctgatatgtttgatcctcgtcttcaggctaagattctaaatgtggttgatgtttcttatggaggagaaaatggtttcaaccaagcaattgagctgtctgctgagatcttagcgaatgtgaagtttatacaagagaagaaattgataggcaagtactttgaggagattagtcaggacactgggaaatacgtctttggagtggatgatacattaaaagttctggaaatgggtgctattgagacacttattgtgtgggaaaatctggatattactaggtatgtgctgaaaaatagcggttctggagaaactgttgtcaaacacttgaacaaggggcaggaggctgatcagagtaacttccgtgatcctgctacaaatgcagaattagaggttcaggaaaaattgtcactgctcgagtggtttgctaatgagtacaggaaatttggttgtagtctggagtttgtgaccaacaagtcacaagaaggatctcagttttgtcgaggttttggtggtattggaggactcctccgttatcagcttgatgttcgagcttttgatgagctttctgatgatggtgaagtttacgaagactcagactagcaattaccaacttctcaaataccagtgcagaagttgagcgggaaagcctgtcctggtgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="1136" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="836" g_stop="135" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E377654" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="836" e_stop="135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGTTCAGGAAAAATTGTCACTGCTCGAGTGGTTTGCTAATGAGTACAGGAAATTTGGTTGTAGTCTGGAGTTTGTGACCAACAAGTCACAAGAAGGATCTCAGTTTTGTCGAGGTTTTGGTGGTATTGGAGGACTCCTCCGTTATCAGCTTGATGTTCGAGCTTTTGATGAGCTTTCTGATGATGGTGAAGTTTACGAAGACTCAGACTAGCAATTACCAACTTCTCAAATACCAGTGCAGAAGTTGAGCGGGAAAGCCTGTACTGGTGTGC</genome_strand>
        <mrna_strand>TGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGTTCAGGAAAAATTGTCACTGCTCGAGTGGTTTGCTAATGAGTACAGGAAATTTGGTTGTAGTCTGGAGTTTGTGACCAACAAGTCACAAGAAGGATCTCAGTTTTGTCGAGGTTTTGGTGGTATTGGAGGACTCCTCCGTTATCAGCTTGATGTTCGAGCTTTTGATGAGCTTTCTGATGATGGTGAAGTTTACGAAGACTCAGACTAGCAATTACCAACTTCTCAAATACCAGTGCAGAAGTTGAGCGGGAAAGCCTGTCCTGGTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232107" ref_strand="+" ref_description="SGN-E232107 [cLED-7-F16]">
      <seq>tgatactcgctggttctgctgacttcaaaacagagctcagtcaatctgatatgtttgatcctcgtcttcaggctaagattctaaatgtggttgatgtttcttatggaggagaaaatggtttcaaccaagcaattgagctgtctgctgagatcttagcgaatgtgaagtttatacaagagaagaaattgataggcaagtactttgaggagattagtcaggacactgggaaatacgtctttggagtggatgatacattaaaagttctggaaatgggtgctattgagacacttattgtgtgggaaaatctggatattactaggtatgtgctgaaaaatagcggttctggagaaactgttgtcaaacacttgaacaaggggcaggaggctgatcagagtaacttccgtgatcctgctacaaatgcagaattagaggttcaggaaaaattgtcactgctcgagtggtttgctaatgagtacaggagatttggttgtagtctggagtttgtgaccaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="1136" stop="22"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="836" g_stop="322" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E232107" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="836" e_stop="322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGTTCAGGAAAAATTGTCACTGCTCGAGTGGTTTGCTAATGAGTACAGGAAATTTGGTTGTAGTCTGGAGTTTGTGACCAACAAG</genome_strand>
        <mrna_strand>TGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGTTCAGGAAAAATTGTCACTGCTCGAGTGGTTTGCTAATGAGTACAGGAGATTTGGTTGTAGTCTGGAGTTTGTGACCAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296531" ref_strand="+" ref_description="SGN-E296531 [cLET-19-L17]">
      <seq>tttagtgttgatttgcccaagaaacacggaagaggaggacaatcagccttgcgttttgctcgtctccgaatggagaaacgacataactacgtgaggaagacagctgagcttgcaactcaattttatataaatcctgccaccagtcagcccaatgtctccggcctgatactcgctggttctgctgacttcaaaacagagctcagtcaatctgatatgtttgatcctcgtcttcaggctaagattctaaatgtggttgatgtttcttatggaggagaaaatggtttcaaccaagcaattgagctgtctgctgagatcttagcgaatgtgaagtttatacaagagaagaaattgataggcaagtactttgaggagattagtcaggacactgggaaatacgtctttggagtggatgatacattaaaagttctggaaatgggtgctattgagacacttattgtgtgggaaaatctggatattactaggtatgtgctgaaaaatagcggttctggagaaactgttgtcaaacacttgaacaaggggcaggaggctgatcagagtaacttccgtgatcctgctacaaatgcagaattagaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="1299" stop="104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="999" g_stop="404" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E296531" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="999" e_stop="404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGT</genome_strand>
        <mrna_strand>TTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296390" ref_strand="+" ref_description="SGN-E296390 [cLET-19-L17](-)">
      <seq>acctctaattctgcatttgtagcaggatcacggaagttactctgatcagcctcctgccccttgttcaagtgtttgacaacagtttctccagaaccgctatttttcagcacatacctagtaatatccagattttcccacacaataagtgtctcaatagcacccatttccagaacttttaatgtatcatccactccaaagacgtatttcccagtgtcctgactaatctcctcaaagtacttgcctatcaatttcttctcttgtataaacttcacattcgctaagatctcagcagacagctcaattgcttggttgaaaccattttctcctccataagaaacatcaaccacatttagaatcttagcctgaagacgaggatcaaacatatcagattgactgagctctgttttgaagtcagcagaaccagcgagtatcaggccggagacattgggctgactggtggcaggatttatataaaattgagttgcaagctcagctgtcttcctcacgtagttatgtcgtttctccattcggagacgagcaaaacgcaaggctgattgtcctcctcttccgtgtttcttgggcaaatcaacactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="104" stop="1299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="404" g_stop="999" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E296390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="404" e_stop="999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTAATTCTGCATTTGTAGCAGGATCACGGAAGTTACTCTGATCAGCCTCCTGCCCCTTGTTCAAGTGTTTGACAACAGTTTCTCCAGAACCGCTATTTTTCAGCACATACCTAGTAATATCCAGATTTTCCCACACAATAAGTGTCTCAATAGCACCCATTTCCAGAACTTTTAATGTATCATCCACTCCAAAGACGTATTTCCCAGTGTCCTGACTAATCTCCTCAAAGTACTTGCCTATCAATTTCTTCTCTTGTATAAACTTCACATTCGCTAAGATCTCAGCAGACAGCTCAATTGCTTGGTTGAAACCATTTTCTCCTCCATAAGAAACATCAACCACATTTAGAATCTTAGCCTGAAGACGAGGATCAAACATATCAGATTGACTGAGCTCTGTTTTGAAGTCAGCAGAACCAGCGAGTATCAGGCCGGAGACATTGGGCTGACTGGTGGCAGGATTTATATAAAATTGAGTTGCAAGCTCAGCTGTCTTCCTCACGTAGTTATGTCGTTTCTCCATTCGGAGACGAGCAAAACGCAAGGCTGATTGTCCTCCTCTTCCGTGTTTCTTGGGCAAATCAACACTAAA</genome_strand>
        <mrna_strand>ACCTCTAATTCTGCATTTGTAGCAGGATCACGGAAGTTACTCTGATCAGCCTCCTGCCCCTTGTTCAAGTGTTTGACAACAGTTTCTCCAGAACCGCTATTTTTCAGCACATACCTAGTAATATCCAGATTTTCCCACACAATAAGTGTCTCAATAGCACCCATTTCCAGAACTTTTAATGTATCATCCACTCCAAAGACGTATTTCCCAGTGTCCTGACTAATCTCCTCAAAGTACTTGCCTATCAATTTCTTCTCTTGTATAAACTTCACATTCGCTAAGATCTCAGCAGACAGCTCAATTGCTTGGTTGAAACCATTTTCTCCTCCATAAGAAACATCAACCACATTTAGAATCTTAGCCTGAAGACGAGGATCAAACATATCAGATTGACTGAGCTCTGTTTTGAAGTCAGCAGAACCAGCGAGTATCAGGCCGGAGACATTGGGCTGACTGGTGGCAGGATTTATATAAAATTGAGTTGCAAGCTCAGCTGTCTTCCTCACGTAGTTATGTCGTTTCTCCATTCGGAGACGAGCAAAACGCAAGGCTGATTGTCCTCCTCTTCCGTGTTTCTTGGGCAAATCAACACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477325" ref_strand="+" ref_description="SGN-E477325 [cSTB-47-L2]">
      <seq>ctatgtgaggaagacagcagagcttgcaacccaattttatataaatcctgccaccagtcagcccaatgtctccggcctgatactagctggttctgctgactttaaaacagagctcagtcaatctgatatgtttgatcctcgtcttcaggctaagattctaaatgtggttgatgtttcttatggaggggaaaatggttttaaccaagcaattgagctctctgctgagatcttagccaatgtgaagtttatacaagagaagaaattgataggcaagtactttgaggagattagtcaggacactgggaagtacgtctttggggtggatgatacattaaaagttctggaaatgggtgctattgagacacttattgtgtgggaaaatctggatattatgaggtatgtgctgaaaaatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="1213" stop="199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="913" g_stop="499" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E477325" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="913" e_stop="499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGC</genome_strand>
        <mrna_strand>CTATGTGAGGAAGACAGCAGAGCTTGCAACCCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTAGCTGGTTCTGCTGACTTTAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGGGAAAATGGTTTTAACCAAGCAATTGAGCTCTCTGCTGAGATCTTAGCCAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAGTACGTCTTTGGGGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTATGAGGTATGTGCTGAAAAATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719527" ref_strand="+" ref_description="SGN-E719527 [FC08AE08]">
      <seq>aatcggccgaattgaaattttgaaaaagtaccctttttgatcttctctctcgcttgatcttctctaagttccgtaacaatgtcggatggtcaggagagcgataagaatattgagatatggaagattaagaaacttatcaaggcactggaagctgctagaggcaatggcacaagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcaaaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagccctgaatgaacttctggaatctgatgacaaatttggatttatagtgatggatgggaatgggactctttttgggacattgagtggcaacacgcgtgaggtccttcataagtttagtgttgatttgcccaagaaacacggaagaggaggacaatcagccttgcgttttgctcgtctccgaatggagaaacgacataactacgtgaggaagacagctgagcttgcaactcaattttatataaatcctgccaccagtcagcccaatgtctccggcctgatactcgctggttctgctgacttcaaaacagagctcagtcaatctgatatgtttgatcctcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3096" stop="469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2794" g_stop="2741" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="68" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="769" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="819" r_length="751" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E719527" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2794" e_stop="2741"/>
          <exon e_start="1519" e_stop="769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGAAAAAGTAACCTTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTT</genome_strand>
        <mrna_strand>AAATTTTGAAAAAGTACCCTTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAAAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333003" ref_strand="+" ref_description="SGN-E333003 [cTOD-19-N14]">
      <seq>gagatatggaagattaagaaacttatcaaggcactggaagctgctagaggcaatggcacaagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcagaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagccctgaatgaacttctggaatctgatgacaaatttggatttatagtgatggatgggaatgggactctttttgggacattgagtggcaacacgcgtgaggtccttcataagtttagtgttgatttgcccaagaaacacggaagaggaggacaatcagccttgcgttttgctcgtctccgaatggagaaacgacataactacgtgaggaagacagctgagcttgcaactcaattttatataaatcctgccaccagtcagcccaatgtctccggcctgatactcgctggttctgctgacttcnaaacagagctcagtcaatctgatatgtttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="1776" stop="477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1476" g_stop="777" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E333003" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1476" e_stop="777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATC</genome_strand>
        <mrna_strand>GAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCNAAACAGAGCTCAGTCAATCTGATATGTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391530" ref_strand="+" ref_description="SGN-E391530 [TUS-16-G11]">
      <seq>tttttgatcttctctctcgcttgatcttctctaagttccgtaacaatgtcggatggtcaggagagcgataagaatattgagatatggaagattaagaaacttatcaaggcactggaagctgctagaggcaatggcacaagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcagaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagccctgaatgaacttctggaatctgatgacaaatttggatttatagtgatggatgggaatgggactctttttgggacattgagtggcaacacgcgtgaggtccttcataagtttagtgttgatttgcccaagaaacacggaagaggaggacaatcagccttgcgttttgctcgtctccgaatggagaaacgacataactacctgaggaagacagctgagcttgcaacttcattttatataaatcctgccaccaatcaccccaatgtctccggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3075" stop="535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2775" g_stop="2741" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="835" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="720" r_length="685" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E391530" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2775" e_stop="2741"/>
          <exon e_start="1519" e_stop="835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTG</genome_strand>
        <mrna_strand>TTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACCTGAGGAAGACAGCTGAGCTTGCAACTTCATTTTATATAAATCCTGCCACCAATCACCCCAATGTCTCCGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208787" ref_strand="+" ref_description="SGN-E208787 [cLEC-51-P17]">
      <seq>aaattccacactgaagccctgaatgaacttctggaatctgatgacaaatttggatttatagtgatggatgggaatggcactctttttgggacattgagtggcaacacgcgtgaggtccttcataagtttagtgttgatttgcccaagaaacacggaagaggaggacattcagccttgcgttttgctcgtctccgaatggagaaacgacataactacgtgaggaagacagctgagcttgcaactcaattttatataaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="1425" stop="565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1125" g_stop="865" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E208787" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1125" e_stop="865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCT</genome_strand>
        <mrna_strand>AAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGCACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACATTCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330613" ref_strand="+" ref_description="SGN-E330613 [cTOD-8-J5]">
      <seq>tttgatcttctctctcgcttgatcttctctaagttccgtaacaatgtcggatggtgaggagagcgataagaatattgagatatggaagattaagaaacttatcaaggcactggaagctgctagaggcaatggcacaagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcagaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagccctgaatgaacttctggaatctgatgacaaatttggatttatagtgatggatgggaatgggactctttttgggacattgagtggcaacacgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3073" stop="714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2773" g_stop="2741" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="1014" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="539" r_length="506" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E330613" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2773" e_stop="2741"/>
          <exon e_start="1519" e_stop="1014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTG</genome_strand>
        <mrna_strand>TTTGATCTTCTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAACAATGTCGGATGGTGAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251388" ref_strand="+" ref_description="SGN-E251388 [cLEG-23-P4]">
      <seq>tttgatcttctctctcgcttgatcttctctaagttccgtaacaatgtcggatggtcaggagagcgataagaatattgagatatggaagattaagaaacttatcaaggcactggaagctgctagaggcaatggcacaagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcagaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagccctgaatgaacttctggaatctgatgacaaatttggatttatagtgatggatgggaatgggactctttttgggacattgagtggcaacacgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3073" stop="714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2773" g_stop="2741" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="1014" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="539" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E251388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2773" e_stop="2741"/>
          <exon e_start="1519" e_stop="1014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTG</genome_strand>
        <mrna_strand>TTTGATCTTCTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358986" ref_strand="+" ref_description="SGN-E358986 [cLHT-24-H14]">
      <seq>tttgaaaaagtaacctttttgatcttctctctcgcttgatcttctctaagttccgtaacaatgtcggatggtcaggagagcgataagaatattgagatatggaagattaaaaaacttatcaaggcactggaagctgctagaggcaatggcaccagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcagaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagcactgaatgaacttttggaatctgatgacaaatttggatttattgtgatggatgggaatgggactctttttgggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3090" stop="733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2790" g_stop="2741" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="1033" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="537" r_length="487" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E358986" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2790" e_stop="2741"/>
          <exon e_start="1519" e_stop="1033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAAAAGTAACCTTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACA</genome_strand>
        <mrna_strand>TTTGAAAAAGTAACCTTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAAAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACCAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCACTGAATGAACTTTTGGAATCTGATGACAAATTTGGATTTATTGTGATGGATGGGAATGGGACTCTTTTTGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301023" ref_strand="+" ref_description="SGN-E301023 [cLEW-22-M5]">
      <seq>tttgatcttctctctcgcttgatcttctctaagttccgtaacaatgtcggatggtcaggagagcgataagaatattgagatatggaagattaagaaacttatcaaggcactggaagctgctagaggcaatggcacaagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcagaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagccctgaatgaacttctggaatctgatgacaaatttggatttatagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3073" stop="763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2773" g_stop="2741" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="1063" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="490" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E301023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2773" e_stop="2741"/>
          <exon e_start="1519" e_stop="1063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTG</genome_strand>
        <mrna_strand>TTTGATCTTCTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331501" ref_strand="+" ref_description="SGN-E331501 [cTOD-9-C22]">
      <seq>atcttctctctcgcttgatcttctctaagttccgtaacaatgtcgggtggtcaggagagcgataagaatattgagatatggaagattaagaaacttatcaaggcactggaagctgctagaggcaatggcacaagcatgatttcacttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtaaatcgacaatctgttcttggtgcaatcacatctgctcagcagaggcttaaactctacaacaaggttccaccaaatgggcttgttctttacactggaacaattgtgaccgatgatgggaaagaaaagaaggttactattgattttgagccattcaagcccattaatgcatcactctatctttgtgacaacaaattccacactgaagccctgaatgaacttctggaatctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3069" stop="782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2769" g_stop="2741" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="1082" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="467" r_length="438" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E331501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2769" e_stop="2741"/>
          <exon e_start="1519" e_stop="1082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGA</genome_strand>
        <mrna_strand>ATCTTCTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAACAATGTCGGGTGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440213" ref_strand="+" ref_description="SGN-E440213 [cSTA-15-N14]">
      <seq>gagagaactagtctcgagttttttttttttttctctcgcttgatcttctctaagttccgtaaacaatgtcggatggtcaggagagcgataagaacattgagatatggaagattaaaaaacttatcaaggcactggaagctgctagaggcaatggcaccagcatgatttcgcttatcatgcctccacgtgatcaagtatctcgtgttaccaagatgcttggagatgagtttggaactgcatcaaatattaagagcagagtgaatcgccaatctgtgcttggtgcaatcacatctgctcagcagaggcttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3075" stop="963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2776" g_stop="2741" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="54" r_length="36" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1519" g_stop="1263" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="312" r_length="258" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E440213" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2776" e_stop="2741"/>
          <exon e_start="1519" e_stop="1263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAGGTATCTTCAAAAACTCATAATTTTTGAAATTTTATTGCTATTGAATCTGAATTTTTGTGATTCAAGCTTGAGCGAGCTTGAATTTTTTGAATTTTTTCTTATTTGATTTTGTTGATTGAAGTTACTGATCAATTTATATTGTTGAAAATTTGGATCTGTGCAATTTTATAGTATGTCCAGTTGATTTGATGTATTTCTATTGGATCTAGATATGAAATTGGATTGTTTTTCACTGTTTGTTAAAGGAATTGCTAAAATTGAATGAGGAAGATATAGATTCGTTCGGGAGATTTATCAATTGTTGCGTGGAATTTATATTTAGATGTTTGATTAATATAATTGAGTTTTTTCTGTATGATGAATATTGTGAAAAGGTGATTTTTGGTGCTTATAGTCCGTGCATGGTGTCGATTTTAAGATTTTTAAGTATTGGAGTTTTAACAGTATAATTTATTCTATGTTCAGTTAATTAAGTGTATTTTTATTGGATCTAGATAAGAAATTGGATAATTTTTCACTATTTGTTATGAGATTTGGTGAAATTGAGAGAGAAAGATATAGATTCGTTCGGCAAATCAATCTATAATTGTGTGGAATCTATATTCCAGAAGTTTGATTAACAAAAAGTAGTTCTTTTATGTGTGATCAGTATTATAAGTATGTGATTTTGGTGCTTCTGGTCCTCATATATTGTCCTTTTAAAACTTCTCAGTATTTTAGTATAACTGTATAAGATGATTTATAGCCTACACACAAATATATATATCGACTTGTTTTAGACAACAAGCTTCATAAGTGTGTCTTTCTTTGTTTAACTCCGTGCCAAGTCAAACAATAGGGACAGTGTGAGTAAAAAGAAAAGCTATTCTTATTTATTGGTTTTACTAGAACTTGATTTGAGCTTCCTCTGAATATGTTATTCTCTGTCCCAGGGATCGTTGTTTACAGTTATGTGTTTATCCTAATTTTTGAAGTGAAAATGTGTTATTTTTAATAAATAAAATCTGCATGCGAGCATGGTGATTCCTTAAGTTGATTTGATACAAAGGAGAAATATGTTGAGCTTTAGACGTTACAAGTGTTTGGTTTGTTTTGAATACTTGACATCTTTTAGTTTCTTGAAGATCAAAACTATTGTACCGTAGTTTATTATGAATTCTTCTTGTTCAGGAGTTTGCTTATGTTTACCATCAATCTGATGATTTTCTGTTTGAACTGCAGTTCCGT-AACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTCTCTCGCTTGATCTTCTCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTAAACAATGTCGGATGGTCAGGAGAGCGATAAGAACATTGAGATATGGAAGATTAAAAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACCAGCATGATTTCGCTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTGAATCGCCAATCTGTGCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334560" ref_strand="+" ref_description="SGN-E334560 [cTOD-23-P22]">
      <seq>cgaaagctaatgcattttttgtgttgtatcaccggcgtggctgacaagaacacggtggtggtacgtcatcatcctctcggaaaacgttcatccaaactacataacaacaatagtaataatttggacaatggaatttgtggaattttatacaaatgggcaaattttggtagaggatggaggcctcgttggtttgttctttatgacggtgtacttttctactataaaatcaacggaaaagtttttaatttcgaaacacagaatggcttcactgtcatagggaagaaatcatttcgtttcatcaacacatgtaaaacaactccgtcttcccaattcctctctcgtaaaccattacgtgaaatccacctcaaggattcaacagtaatgggaagttgttcagacgatcgaaggtttttgataattactgggaagaagaagctgcaattgaaggcagagtctaaggacgataggttaatatggttggaaggattgtttgcagcaaagaaggcatttataacaagtgattttgttcataaccctagaatgaacaataattgcaaggttggaactcgagacagcggaggaaacacaagcagatcgaacgaagagcattatatgcaggangagactgatgatgatgttcacactgataactcgttttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3258" stop="5232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3558" g_stop="3926" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3927" i_stop="4274" i_length="348">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4275" g_stop="4482" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="577" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4483" i_stop="4845" i_length="363">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4846" g_stop="4932" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="664" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E334560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3558" e_stop="3926"/>
          <exon e_start="4275" e_stop="4482"/>
          <exon e_start="4846" e_stop="4932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGCTAATGCATTTTTTGTGTTGTATCACCGGCGTGGCTGACAAGAACACGGTGGTGGTACGTCATCATCCTCTCGGAAAACGTTCATCCAAACTACATAACAACAATAGTAATAATTTGGACAATGGAATTTGTGGAATTTTATACAAATGGGCAAATTTTGGTAGAGGATGGAGGCCTCGTTGGTTTGTTCTTTATGACGGTGTACTTTTCTACTATAAAATCAACGGAAAAGTTTTTAATTTCGAAACACAGAATGGCTTCACTGTCATAGGGAAGAAATCATTTCGTTTCATCAACACATGTAAAACAACTCCGTCTTCCCAATTCCTCTCTCGTAAACCATTACGTGAAATCCACCTCAAGGTATCTAATTTATAATGATATTATGTTATATACAAGGGTCAAAAAATCTAATTTGGATATGAATCCTTTAATTATTTTAGGGTGTTCGAATAAGCACAGAGTTTAAGAAAGAAATAAAGACGTTTGACGTATATGAAGACTATTAGAATATGTTGTCTACATTACACATCTTGGGATGCGTCCCTTCCCTAGACCCCCTGCATGAATGCGAGATATTTTGTGCATCAGACTGTCACGTAATTTTTAGTGTTGTATGTGTAGATAAGTTGTATGAGAAAATGCTTTGTAAGATTGATTTTGATTTTGATTTTCGGTTGGATATTATCTTTAACACTACTATCTATATAGGATTCAACAGTAATGGGAAGTTGTTCAGACGATCGAAGGTTTTTGATAATTACTGGGAAGAAGAAGCTGCAATTGAAGGCAGAGTCTAAGGACGATAGGTTAATATGGTTGGAAGGATTGTTTGCAGCAAAGAAGGCATTTATAACAAGTGATTTTGTTCATAACCCTAGAATGAACAATAATTGCAAGGTTGGAACTCGAGACAGCGGTATGAAAGGTTAATGTCATGAAGTTTTCATAAAACTAGAGCTATCGTTATACTGTTCTTCTTCTTTTCTCTGTTTTCGTAAGTGCAAATGTTTGAAAACTTGAATATGTGAGCTAGTCATGAGAAGAAGCAATGTTACTTGATTGTTATCAAACTGATTGCAATCTTTTTCTGTCCGTGAAGATCCCAGTAGAGTGTTCTTTACTTCTATTAGGTCATGAACTAGATCAGAATCATTCTCAATGAGTCCATTAGAAGTGATTTAAATTGGTAGTATAAGAATATGGTTTAGACGATTAAGTAATGATAGGTGAAATATTGTTTCATAAGTTCATTGCAACCATAACTTGCTAAATTTTGCAGGAGGAAACACAAGCAGATCGAACGAAGAGCATTATAGGCAGGAGGAGACTGATGATGATGTTCACACTGATAACTCGTTTTTTGATG</genome_strand>
        <mrna_strand>CGAAAGCTAATGCATTTTTTGTGTTGTATCACCGGCGTGGCTGACAAGAACACGGTGGTGGTACGTCATCATCCTCTCGGAAAACGTTCATCCAAACTACATAACAACAATAGTAATAATTTGGACAATGGAATTTGTGGAATTTTATACAAATGGGCAAATTTTGGTAGAGGATGGAGGCCTCGTTGGTTTGTTCTTTATGACGGTGTACTTTTCTACTATAAAATCAACGGAAAAGTTTTTAATTTCGAAACACAGAATGGCTTCACTGTCATAGGGAAGAAATCATTTCGTTTCATCAACACATGTAAAACAACTCCGTCTTCCCAATTCCTCTCTCGTAAACCATTACGTGAAATCCACCTCAAG............................................................................................................................................................................................................................................................................................................................................................GATTCAACAGTAATGGGAAGTTGTTCAGACGATCGAAGGTTTTTGATAATTACTGGGAAGAAGAAGCTGCAATTGAAGGCAGAGTCTAAGGACGATAGGTTAATATGGTTGGAAGGATTGTTTGCAGCAAAGAAGGCATTTATAACAAGTGATTTTGTTCATAACCCTAGAATGAACAATAATTGCAAGGTTGGAACTCGAGACAGCG...........................................................................................................................................................................................................................................................................................................................................................................GAGGAAACACAAGCAGATCGAACGAAGAGCATTATATGCAGGANGAGACTGATGATGATGTTCACACTGATAACTCGTTTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334487" ref_strand="+" ref_description="SGN-E334487 [cTOD-23-M18]">
      <seq>attttttgtgttgtatcaccggcgtggctgacaagaacacggtggtggtacgtcatcatcctctcggaaaacgttcatccaaactacataacaacaatagtaataatttggacaatggaatttgtggaattttatacaaatgggcaaattttggtagaggatggaggcctcgttggtttgttctttatgacggtgtacttttctactataaaatcaacggaaaagtttttaatttcgaaacacagaatggcttcactgtcatagggaagaaatcatttcgtttcatcaacacatgtaaaacaactccgtcttcccaattcctctctcgtaaaccattacgtgaaatccacctcaaggattcaacagtaatgggaagttgttcagacgatcgaaggtttttgataattactgggaagaagaagctgcaattgaaggcagagtctaaggacgataggttaatatggttggaaggattgtttgcagcaaagaaggcatttataacaagtgattttgttcataaccctagaatgaacaataattgcaaggttggaactcgagacagcggtatgaaaggaggaaacacaagcagatcgaacgaagagcattataggcaggaggagactgatgatgatgttcacactgataactcgttttttgatgctctagattgtctttctacgtgttccttannaaccgccaattgttatgatgaaagctcatcttttgattcagataatggggaggttcagccatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="3271" stop="5329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3571" g_stop="3926" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3927" i_stop="4274" i_length="348">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4275" g_stop="4491" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="573" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4492" i_stop="4845" i_length="354">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4846" g_stop="5029" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="757" r_length="184" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E334487" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3571" e_stop="3926"/>
          <exon e_start="4275" e_stop="4491"/>
          <exon e_start="4846" e_stop="5029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGTGTTGTATCACCGGCGTGGCTGACAAGAACACGGTGGTGGTACGTCATCATCCTCTCGGAAAACGTTCATCCAAACTACATAACAACAATAGTAATAATTTGGACAATGGAATTTGTGGAATTTTATACAAATGGGCAAATTTTGGTAGAGGATGGAGGCCTCGTTGGTTTGTTCTTTATGACGGTGTACTTTTCTACTATAAAATCAACGGAAAAGTTTTTAATTTCGAAACACAGAATGGCTTCACTGTCATAGGGAAGAAATCATTTCGTTTCATCAACACATGTAAAACAACTCCGTCTTCCCAATTCCTCTCTCGTAAACCATTACGTGAAATCCACCTCAAGGTATCTAATTTATAATGATATTATGTTATATACAAGGGTCAAAAAATCTAATTTGGATATGAATCCTTTAATTATTTTAGGGTGTTCGAATAAGCACAGAGTTTAAGAAAGAAATAAAGACGTTTGACGTATATGAAGACTATTAGAATATGTTGTCTACATTACACATCTTGGGATGCGTCCCTTCCCTAGACCCCCTGCATGAATGCGAGATATTTTGTGCATCAGACTGTCACGTAATTTTTAGTGTTGTATGTGTAGATAAGTTGTATGAGAAAATGCTTTGTAAGATTGATTTTGATTTTGATTTTCGGTTGGATATTATCTTTAACACTACTATCTATATAGGATTCAACAGTAATGGGAAGTTGTTCAGACGATCGAAGGTTTTTGATAATTACTGGGAAGAAGAAGCTGCAATTGAAGGCAGAGTCTAAGGACGATAGGTTAATATGGTTGGAAGGATTGTTTGCAGCAAAGAAGGCATTTATAACAAGTGATTTTGTTCATAACCCTAGAATGAACAATAATTGCAAGGTTGGAACTCGAGACAGCGGTATGAAAGGTTAATGTCATGAAGTTTTCATAAAACTAGAGCTATCGTTATACTGTTCTTCTTCTTTTCTCTGTTTTCGTAAGTGCAAATGTTTGAAAACTTGAATATGTGAGCTAGTCATGAGAAGAAGCAATGTTACTTGATTGTTATCAAACTGATTGCAATCTTTTTCTGTCCGTGAAGATCCCAGTAGAGTGTTCTTTACTTCTATTAGGTCATGAACTAGATCAGAATCATTCTCAATGAGTCCATTAGAAGTGATTTAAATTGGTAGTATAAGAATATGGTTTAGACGATTAAGTAATGATAGGTGAAATATTGTTTCATAAGTTCATTGCAACCATAACTTGCTAAATTTTGCAGGAGGAAACACAAGCAGATCGAACGAAGAGCATTATAGGCAGGAGGAGACTGATGATGATGTTCACACTGATAACTCGTTTTTTGATGCTCTAGATTGTCTTTCTACGTGTTCCTTAAAAACCGCCAATTGTTATGATGAAAGCTCATCTTTTGATTCAGATAATGGGGAGGTTCAGCCATCTGA</genome_strand>
        <mrna_strand>ATTTTTTGTGTTGTATCACCGGCGTGGCTGACAAGAACACGGTGGTGGTACGTCATCATCCTCTCGGAAAACGTTCATCCAAACTACATAACAACAATAGTAATAATTTGGACAATGGAATTTGTGGAATTTTATACAAATGGGCAAATTTTGGTAGAGGATGGAGGCCTCGTTGGTTTGTTCTTTATGACGGTGTACTTTTCTACTATAAAATCAACGGAAAAGTTTTTAATTTCGAAACACAGAATGGCTTCACTGTCATAGGGAAGAAATCATTTCGTTTCATCAACACATGTAAAACAACTCCGTCTTCCCAATTCCTCTCTCGTAAACCATTACGTGAAATCCACCTCAAG............................................................................................................................................................................................................................................................................................................................................................GATTCAACAGTAATGGGAAGTTGTTCAGACGATCGAAGGTTTTTGATAATTACTGGGAAGAAGAAGCTGCAATTGAAGGCAGAGTCTAAGGACGATAGGTTAATATGGTTGGAAGGATTGTTTGCAGCAAAGAAGGCATTTATAACAAGTGATTTTGTTCATAACCCTAGAATGAACAATAATTGCAAGGTTGGAACTCGAGACAGCGGTATGAAAG..................................................................................................................................................................................................................................................................................................................................................................GAGGAAACACAAGCAGATCGAACGAAGAGCATTATAGGCAGGAGGAGACTGATGATGATGTTCACACTGATAACTCGTTTTTTGATGCTCTAGATTGTCTTTCTACGTGTTCCTTANNAACCGCCAATTGTTATGATGAAAGCTCATCTTTTGATTCAGATAATGGGGAGGTTCAGCCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540145" ref_strand="+" ref_description="SGN-E540145 [TUS-60-E9](-)">
      <seq>tgacaaataattaaaagatatacttaattaattaattattatggctgatgatgaacagaggaagccaactaccagaagaacacctcttagccaaatagatgaggaaagggtatgtattatgttgtctatggatgaaactgaaagtgaaagtgaagatgaggaaattactgcctctgatgaagaatttttagacagtgaaattcaagatttcgagttagaattctacgacgatgactatgatgatgataacatggaggaagatgatgttgatccagatgaattatcttatgaggaattaattgctttaggagaatttgttggagtagagaacagaggattaactgaagaagaaatcaacaaatccttacattcttcaacatttcaatccaataattccaagacacttgtcaacaagtgtgttgtgtgtcaattggaatatgaagaaggagagaagttagtagcacttccatgtgatcatccctaccatttagattgtattaaaaaatggcttcaaataaagaaggtttgcccaatatgtagtgatgaggtctcatctactaatgttccccaaggaactatagctctatgtcacttgtattataaacccaaattattgtattgaaattaatcaaaagatttattgaatgtgtcaaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10210" stop="7771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9910" g_stop="9808" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9807" i_stop="9175" i_length="633">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9174" g_stop="9072" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="206" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9071" i_stop="8990" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8989" g_stop="8904" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="292" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8903" i_stop="8807" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8806" g_stop="8685" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="414" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8684" i_stop="8404" i_length="281">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8403" g_stop="8295" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="523" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8294" i_stop="8205" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8204" g_stop="8065" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="665" r_length="142" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E540145" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9910" e_stop="9808"/>
          <exon e_start="9174" e_stop="9072"/>
          <exon e_start="8989" e_stop="8904"/>
          <exon e_start="8806" e_stop="8685"/>
          <exon e_start="8403" e_stop="8295"/>
          <exon e_start="8204" e_stop="8065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAGGTATGTATTTTACTTTTTTATACTCTAATCTTGTGTTTAAAATTTAATTCTTGTTGTATGTTCGTGACAGAGCCAAGATTTTTACTTAGGAGAATTAAAATATAATTTAGGGAAAAGACTGAAATATGTAATCGAGCTTTGATAAAATACTAATCGATGTCATCTATTAAAAGTTCGGATCATCATTCATCTATTTCGTCATTATTTGTTAACTGAAATGACATAGATGAGTCGAATTTTTAATCGATGACTTAGACGATAAACTTTTTGTCAAAGTTTGATGACATATTTGAGTCTTTCTCTTTAATAAAATGATTTCATTAATGACGTCGCCACCACGTGTAAAAGATGGTTTTGCAAAAATAGAAATTGTTTTCCGTTAACAAATAATTGCATGGGTAAGCATTTTTTTCAAATGAAAATGACGTAGATAAGCCAAATTTTTAATGGATAACATAAATAGACATTTTTTCAAAGTTTGATGACATATTTAAACTTATTCCTGTAATGTATACCTTGCAAGAAAATTTGACATATTTATATACATAAATACGTAAAAAGATTATTATTTTTTGCGACTGACGAAAAAGGAATTAACAATTTGCATGGAAATAAATGTGTGTGATATTTCAGGAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAGGTAATTAATAAATTTAATTACCTTATTCTATAATGGTCTCGAGTTCAAGTTTTTGAGGTATGAAATAGACTTTTATTCATAGATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAGGTATATAATATGATAAATTTGTAACGTTTTAATATGATAATTTGTAATGTTTAGTTCAAAAAATAATACTTTTTAAGTTATATAAATGTTGTTACAGGAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAAGTAAGTAGTCGAAAATTAGATATTAATTAACCAAAAAAAAAATTCAATCGTTCAATCATTCTTATAATAATTTTAGTTATTTTTTTCACGTGATCAACATGACATTTAAGACGTGATTATCACCTCTTGGTTATTAGATTTTTTTTTTGATTTTTTATATAGAGTTTGATACCAGTATTATTGTCGATTGACTAATATGTTTGCATAACATTTAAGGGAAACGACTGAAATTAGTGATTTATAACAGATTGAAAAAGTGATTTTTTTTAATGAACATATAGGTGTGTTGTGTGTCAATTGGAATATGAAGAAGGAGAGAAGTTAGTAGCACTTCCATGTGATCATCCCTACCATTTAGATTGTATTAAAAAATGGCTTCAAATAAAGAAGGTAAATTTAATTGTTAAATACTCTTAATTTATATTATTAGCCTATTTTTTTTTAATGTTTAATATTTATATATTTATTTTTCTTTTGTAGGTTTGCCCAATATGTAGTGATGAGGTCTCATCTACTAATGTT-CCCAAGGAACTATAGCTCTATGTCACTTGTATTATAAA-CCAAATTATTGTATTGAAATTAATCAAAAGATTTATTGAATGTGTCAAGGGAAATTTGGA</genome_strand>
        <mrna_strand>TGACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAG..................................................................................ATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAG.................................................................................................GAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAA.........................................................................................................................................................................................................................................................................................GTGTGTTGTGTGTCAATTGGAATATGAAGAAGGAGAGAAGTTAGTAGCACTTCCATGTGATCATCCCTACCATTTAGATTGTATTAAAAAATGGCTTCAAATAAAGAAG..........................................................................................GTTTGCCCAATATGTAGTGATGAGGTCTCATCTACTAATGTTCCCCAAGGAACTATAGCTCTATGTCACTTGTATTATAAACCCAAATTATTGTATTGAAATTAATCAAAAGATTTATTGAATGTGTCAAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540147" ref_strand="+" ref_description="SGN-E540147 [TUS-60-E9]">
      <seq>tgacaaataattaaaagatatacttaattaattaattattatggctgatgatgaacagaggaagccaactaccagaagaacacctcttagccaaatagatgaggaaagggtatgtattatgttgtctatggatgaaactgaaagtgaaagtgaagatgaggaaattactgcctctgatgaagaatttttagacagtgaaattcaagatttcgagttagaattctacgacgatgactatgatgatgataacatggaggaagatgatgttgatccagatgaattatcttatgaggaattaattgctttaggagaatttgttggagtagagaacagaggattaactgaagaagaaatcaacaaatccttacattcttcaacatttcaatccaataattccaagacacttgtcaacaagtgtgttgtgtgtcaattggaatatgaagaaggagagaagttagtagcacttccatgtgatcatccctaccatttagattgtattaaaaaatggcttcaaataaagaaggtttgcccaatatgtagtgatgaggtctcatctactaatgttcccaaggaactatagctctatgtcacttgtattataaaccaaattattgtattgaaattaatcaaaagatttattgaatgtgtcaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10210" stop="7771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9910" g_stop="9808" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9807" i_stop="9175" i_length="633">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9174" g_stop="9072" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="206" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9071" i_stop="8990" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8989" g_stop="8904" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="292" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8903" i_stop="8807" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8806" g_stop="8685" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="414" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8684" i_stop="8404" i_length="281">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8403" g_stop="8295" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="523" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8294" i_stop="8205" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8204" g_stop="8066" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="662" r_length="139" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E540147" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9910" e_stop="9808"/>
          <exon e_start="9174" e_stop="9072"/>
          <exon e_start="8989" e_stop="8904"/>
          <exon e_start="8806" e_stop="8685"/>
          <exon e_start="8403" e_stop="8295"/>
          <exon e_start="8204" e_stop="8066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAGGTATGTATTTTACTTTTTTATACTCTAATCTTGTGTTTAAAATTTAATTCTTGTTGTATGTTCGTGACAGAGCCAAGATTTTTACTTAGGAGAATTAAAATATAATTTAGGGAAAAGACTGAAATATGTAATCGAGCTTTGATAAAATACTAATCGATGTCATCTATTAAAAGTTCGGATCATCATTCATCTATTTCGTCATTATTTGTTAACTGAAATGACATAGATGAGTCGAATTTTTAATCGATGACTTAGACGATAAACTTTTTGTCAAAGTTTGATGACATATTTGAGTCTTTCTCTTTAATAAAATGATTTCATTAATGACGTCGCCACCACGTGTAAAAGATGGTTTTGCAAAAATAGAAATTGTTTTCCGTTAACAAATAATTGCATGGGTAAGCATTTTTTTCAAATGAAAATGACGTAGATAAGCCAAATTTTTAATGGATAACATAAATAGACATTTTTTCAAAGTTTGATGACATATTTAAACTTATTCCTGTAATGTATACCTTGCAAGAAAATTTGACATATTTATATACATAAATACGTAAAAAGATTATTATTTTTTGCGACTGACGAAAAAGGAATTAACAATTTGCATGGAAATAAATGTGTGTGATATTTCAGGAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAGGTAATTAATAAATTTAATTACCTTATTCTATAATGGTCTCGAGTTCAAGTTTTTGAGGTATGAAATAGACTTTTATTCATAGATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAGGTATATAATATGATAAATTTGTAACGTTTTAATATGATAATTTGTAATGTTTAGTTCAAAAAATAATACTTTTTAAGTTATATAAATGTTGTTACAGGAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAAGTAAGTAGTCGAAAATTAGATATTAATTAACCAAAAAAAAAATTCAATCGTTCAATCATTCTTATAATAATTTTAGTTATTTTTTTCACGTGATCAACATGACATTTAAGACGTGATTATCACCTCTTGGTTATTAGATTTTTTTTTTGATTTTTTATATAGAGTTTGATACCAGTATTATTGTCGATTGACTAATATGTTTGCATAACATTTAAGGGAAACGACTGAAATTAGTGATTTATAACAGATTGAAAAAGTGATTTTTTTTAATGAACATATAGGTGTGTTGTGTGTCAATTGGAATATGAAGAAGGAGAGAAGTTAGTAGCACTTCCATGTGATCATCCCTACCATTTAGATTGTATTAAAAAATGGCTTCAAATAAAGAAGGTAAATTTAATTGTTAAATACTCTTAATTTATATTATTAGCCTATTTTTTTTTAATGTTTAATATTTATATATTTATTTTTCTTTTGTAGGTTTGCCCAATATGTAGTGATGAGGTCTCATCTACTAATGTTCCCAAGGAACTATAGCTCTATGTCACTTGTATTATAAACCAAATTATTGTATTGAAATTAATCAAAAGATTTATTGAATGTGTCAAGGGAAATTTGG</genome_strand>
        <mrna_strand>TGACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAG..................................................................................ATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAG.................................................................................................GAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAA.........................................................................................................................................................................................................................................................................................GTGTGTTGTGTGTCAATTGGAATATGAAGAAGGAGAGAAGTTAGTAGCACTTCCATGTGATCATCCCTACCATTTAGATTGTATTAAAAAATGGCTTCAAATAAAGAAG..........................................................................................GTTTGCCCAATATGTAGTGATGAGGTCTCATCTACTAATGTTCCCAAGGAACTATAGCTCTATGTCACTTGTATTATAAACCAAATTATTGTATTGAAATTAATCAAAAGATTTATTGAATGTGTCAAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286255" ref_strand="+" ref_description="SGN-E286255 [cLES-11-N11]">
      <seq>gacaaataattaaaagatatacttaattaattaattattatggctgatgatgaacagaggaagccaactaccagaagaacacctcttagccaaatagatgaggaaagggtatgtattatgttgtctatggatgaaactgaaagtgaaagtgaagatgaggaaattactgcctctgatgaagaatttttagacagtgaaattcaagatttcgagttagaattctacgacgatgactatgatgatgataacatggaggaagatgatgttgatccagatgaattatcttatgaggaattaattgctttaggagaatttgttggagtagagaacagaggattaactgaagaagaaatcaacaaatccttacattcttcaacatttcaatccaataattccaagacacttgtcaacaagtgtgttgtgtgtcaattggaatatgaagaaggagagaagttagtagcacttccatgtgatcatccctaccatttagattgtattaaaaaatggcttcaaataaagaaggtttgcccaatatgtagtgatgaggtctcatctactaatgttcccaaggaactatagctctatgtcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10209" stop="7834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9909" g_stop="9808" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9807" i_stop="9175" i_length="633">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9174" g_stop="9072" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="205" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9071" i_stop="8990" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8989" g_stop="8904" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="291" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8903" i_stop="8807" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8806" g_stop="8685" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="413" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8684" i_stop="8404" i_length="281">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8403" g_stop="8295" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="522" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8294" i_stop="8205" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8204" g_stop="8134" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="593" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E286255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9909" e_stop="9808"/>
          <exon e_start="9174" e_stop="9072"/>
          <exon e_start="8989" e_stop="8904"/>
          <exon e_start="8806" e_stop="8685"/>
          <exon e_start="8403" e_stop="8295"/>
          <exon e_start="8204" e_stop="8134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAGGTATGTATTTTACTTTTTTATACTCTAATCTTGTGTTTAAAATTTAATTCTTGTTGTATGTTCGTGACAGAGCCAAGATTTTTACTTAGGAGAATTAAAATATAATTTAGGGAAAAGACTGAAATATGTAATCGAGCTTTGATAAAATACTAATCGATGTCATCTATTAAAAGTTCGGATCATCATTCATCTATTTCGTCATTATTTGTTAACTGAAATGACATAGATGAGTCGAATTTTTAATCGATGACTTAGACGATAAACTTTTTGTCAAAGTTTGATGACATATTTGAGTCTTTCTCTTTAATAAAATGATTTCATTAATGACGTCGCCACCACGTGTAAAAGATGGTTTTGCAAAAATAGAAATTGTTTTCCGTTAACAAATAATTGCATGGGTAAGCATTTTTTTCAAATGAAAATGACGTAGATAAGCCAAATTTTTAATGGATAACATAAATAGACATTTTTTCAAAGTTTGATGACATATTTAAACTTATTCCTGTAATGTATACCTTGCAAGAAAATTTGACATATTTATATACATAAATACGTAAAAAGATTATTATTTTTTGCGACTGACGAAAAAGGAATTAACAATTTGCATGGAAATAAATGTGTGTGATATTTCAGGAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAGGTAATTAATAAATTTAATTACCTTATTCTATAATGGTCTCGAGTTCAAGTTTTTGAGGTATGAAATAGACTTTTATTCATAGATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAGGTATATAATATGATAAATTTGTAACGTTTTAATATGATAATTTGTAATGTTTAGTTCAAAAAATAATACTTTTTAAGTTATATAAATGTTGTTACAGGAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAAGTAAGTAGTCGAAAATTAGATATTAATTAACCAAAAAAAAAATTCAATCGTTCAATCATTCTTATAATAATTTTAGTTATTTTTTTCACGTGATCAACATGACATTTAAGACGTGATTATCACCTCTTGGTTATTAGATTTTTTTTTTGATTTTTTATATAGAGTTTGATACCAGTATTATTGTCGATTGACTAATATGTTTGCATAACATTTAAGGGAAACGACTGAAATTAGTGATTTATAACAGATTGAAAAAGTGATTTTTTTTAATGAACATATAGGTGTGTTGTGTGTCAATTGGAATATGAAGAAGGAGAGAAGTTAGTAGCACTTCCATGTGATCATCCCTACCATTTAGATTGTATTAAAAAATGGCTTCAAATAAAGAAGGTAAATTTAATTGTTAAATACTCTTAATTTATATTATTAGCCTATTTTTTTTTAATGTTTAATATTTATATATTTATTTTTCTTTTGTAGGTTTGCCCAATATGTAGTGATGAGGTCTCATCTACTAATGTTCCCAAGGAACTATAGCTCTATGTCACTTG</genome_strand>
        <mrna_strand>GACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAG..................................................................................ATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAG.................................................................................................GAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAA.........................................................................................................................................................................................................................................................................................GTGTGTTGTGTGTCAATTGGAATATGAAGAAGGAGAGAAGTTAGTAGCACTTCCATGTGATCATCCCTACCATTTAGATTGTATTAAAAAATGGCTTCAAATAAAGAAG..........................................................................................GTTTGCCCAATATGTAGTGATGAGGTCTCATCTACTAATGTTCCCAAGGAACTATAGCTCTATGTCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335624" ref_strand="+" ref_description="SGN-E335624 [cTOE-8-I16]">
      <seq>attaagttgacaaataattaaaagatatacttaattaattaattattatggctgatgatgaacagaggaagccaactaccagaagaacacctcttagccaaatagatgaggaaagggtatgtattatgttgtctatggatgaaactgaaagtgaaagtgaagatgaggaaattactgcctctgatgaagaatttttagacagtgaaattcaagatttcgagttagaattctacgacgatgactatgatgatgataacatggaggaagatgatgttgatccagatgaattatcttatgaggaattaattgctttaggagaatttgttggagtagagaacagaggattaactgaagaagaaatcaacaaatccttacattcttcaacatttcaatccaataattccaagacacttgtcaacaagtgtgttgtgtgtcaattggaatatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10217" stop="8075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9917" g_stop="9808" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9807" i_stop="9175" i_length="633">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9174" g_stop="9072" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="213" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9071" i_stop="8990" i_length="82">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.717" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8989" g_stop="8904" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="299" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8903" i_stop="8807" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8806" g_stop="8685" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="421" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8684" i_stop="8404" i_length="281">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8403" g_stop="8375" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="450" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E335624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9917" e_stop="9808"/>
          <exon e_start="9174" e_stop="9072"/>
          <exon e_start="8989" e_stop="8904"/>
          <exon e_start="8806" e_stop="8685"/>
          <exon e_start="8403" e_stop="8375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGTTGACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAGGTATGTATTTTACTTTTTTATACTCTAATCTTGTGTTTAAAATTTAATTCTTGTTGTATGTTCGTGACAGAGCCAAGATTTTTACTTAGGAGAATTAAAATATAATTTAGGGAAAAGACTGAAATATGTAATCGAGCTTTGATAAAATACTAATCGATGTCATCTATTAAAAGTTCGGATCATCATTCATCTATTTCGTCATTATTTGTTAACTGAAATGACATAGATGAGTCGAATTTTTAATCGATGACTTAGACGATAAACTTTTTGTCAAAGTTTGATGACATATTTGAGTCTTTCTCTTTAATAAAATGATTTCATTAATGACGTCGCCACCACGTGTAAAAGATGGTTTTGCAAAAATAGAAATTGTTTTCCGTTAACAAATAATTGCATGGGTAAGCATTTTTTTCAAATGAAAATGACGTAGATAAGCCAAATTTTTAATGGATAACATAAATAGACATTTTTTCAAAGTTTGATGACATATTTAAACTTATTCCTGTAATGTATACCTTGCAAGAAAATTTGACATATTTATATACATAAATACGTAAAAAGATTATTATTTTTTGCGACTGACGAAAAAGGAATTAACAATTTGCATGGAAATAAATGTGTGTGATATTTCAGGAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAGGTAATTAATAAATTTAATTACCTTATTCTATAATGGTCTCGAGTTCAAGTTTTTGAGGTATGAAATAGACTTTTATTCATAGATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAGGTATATAATATGATAAATTTGTAACGTTTTAATATGATAATTTGTAATGTTTAGTTCAAAAAATAATACTTTTTAAGTTATATAAATGTTGTTACAGGAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAAGTAAGTAGTCGAAAATTAGATATTAATTAACCAAAAAAAAAATTCAATCGTTCAATCATTCTTATAATAATTTTAGTTATTTTTTTCACGTGATCAACATGACATTTAAGACGTGATTATCACCTCTTGGTTATTAGATTTTTTTTTTGATTTTTTATATAGAGTTTGATACCAGTATTATTGTCGATTGACTAATATGTTTGCATAACATTTAAGGGAAACGACTGAAATTAGTGATTTATAACAGATTGAAAAAGTGATTTTTTTTAATGAACATATAGGTGTGTTGTGTGTCAATTGGAATATGAAG</genome_strand>
        <mrna_strand>ATTAAGTTGACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAG..................................................................................ATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAG.................................................................................................GAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAA.........................................................................................................................................................................................................................................................................................GTGTGTTGTGTGTCAATTGGAATATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347915" ref_strand="+" ref_description="SGN-E347915 [cTOF-31-M8]">
      <seq>ttctaacctacatgcatctttgtgtggaggactggaaatggtggtggaagtcattctttgcttctggttcagtcgcgatatacattttcctgtactccatcaactatctaatattcgacctcaagagcttaagcggccctgtttccgccaccctttacctcggatactccctcttcatggtcttggctattatgtttgcaacaggcactgttcgggttcctttcgtctttctggtttgtacattatttgttctcttcagtgaagctagattgaggaagcctcttggtcttgaagagctgcaagtaaacaaatcaaacattgaagaagcagtgggcggatttcgaaagaacattctattttacttttaatgtcattttgtagggtatttcgaagagaaaaaaacaataaaactcctaaagttttgttaaattctttaatagaaaaagtcattgcatctactgaagtaaagtttcatcagttggtaggatgaacatcacattgttatcatttctctagtttcctattaatagtgttgaatctgttatctttgaaagggctttatcataatattagtgattcttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37479" stop="38662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37779" g_stop="38371" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E347915" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37779" e_stop="38371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAACCTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAGTCATTCTTTGCTTCTGGTTCAGTCGCGATATACATTTTCCTGTACTCCATCAACTATCTAATATTCGACCTCAAGAGCTTAAGCGGCCCTGTTTCCGCCACCCTTTACCTCGGATACTCCCTCTTCATGGTCTTGGCTATTATGTTTGCAACAGGCACTG-TCGGGTTCCTTTCGTCTTTCTGGTTTGTACATTATTTGTTCTCTTCAGTGAAGCTAGATTGAGGAAGCCTCTTGGTCTTGAAGAGCTGCAAGTAAACAAATCAAACATTGAAGAAGCAGTGGGCGGATTTCGAAAGAACATTCTATTTTACTTTTAATGTCATTTTGTAGGGTATTTCGAAGAGAAAAAAACAATAAAACTCCTAAAGTTTTGTTAAATTCTTTAATAGAAAAAGTCATTGCATCTACTGAAGTAAAGTTTCATCAGTTGGTAGGATGAACATCACATTGTTATCATTTCTCTAGTTTCCTATTAATAGTGTTGAATCTGTTATCTTTGAAAGGGCTTTATCATAATATTAGTGATTCTTGTAACTATGTCTA</genome_strand>
        <mrna_strand>TTCTAACCTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAGTCATTCTTTGCTTCTGGTTCAGTCGCGATATACATTTTCCTGTACTCCATCAACTATCTAATATTCGACCTCAAGAGCTTAAGCGGCCCTGTTTCCGCCACCCTTTACCTCGGATACTCCCTCTTCATGGTCTTGGCTATTATGTTTGCAACAGGCACTGTTCGGGTTCCTTTCGTCTTTCTGGTTTGTACATTATTTGTTCTCTTCAGTGAAGCTAGATTGAGGAAGCCTCTTGGTCTTGAAGAGCTGCAAGTAAACAAATCAAACATTGAAGAAGCAGTGGGCGGATTTCGAAAGAACATTCTATTTTACTTTTAATGTCATTTTGTAGGGTATTTCGAAGAGAAAAAAACAATAAAACTCCTAAAGTTTTGTTAAATTCTTTAATAGAAAAAGTCATTGCATCTACTGAAGTAAAGTTTCATCAGTTGGTAGGATGAACATCACATTGTTATCATTTCTCTAGTTTCCTATTAATAGTGTTGAATCTGTTATCTTTGAAAGGGCTTTATCATAATATTAGTGATTCTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249176" ref_strand="-" ref_description="SGN-E249176 [cLEF-50-M1]">
      <seq>agtcattctttgcttctggttcagtcgcgatatacattttcctgtactccatcaactatctaatattcgacctcaagagcttaagcggccctgtttccgccaccctttacctcggatactccctcttcatggtcttggctattatgtttgcaacaggcactgtcgggttcctttcgtctttctggtttgtacattatttgttctcttcagtgaagctagattgaggaagcctcttggtcttgaagagctgcaagtaaacaaatcaaacattgaagaagcagtgggcggatttcgaaagaacattctattttacttttaatgtcattttgtagggtatttcgaagagaaaaaaccaataaaactcctaaagttttgttaaattctttaatagaaaaagtcattgcatctactgaagtaaagtttcatcagttggtaggatgaacatcacattgttatcatttctctagtttcctattaatagtgttgaatctgttatctttgaaagggctttatcataatattagtgattcttgtacctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="37527" stop="80373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37827" g_stop="38366" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38367" i_stop="38901" i_length="535">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38902" g_stop="38929" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="568" r_length="28" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E249176" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249176" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37827" e_stop="38366"/>
          <exon e_start="38902" e_stop="38929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATTCTTTGCTTCTGGTTCAGTCGCGATATACATTTTCCTGTACTCCATCAACTATCTAATATTCGACCTCAAGAGCTTAAGCGGCCCTGTTTCCGCCACCCTTTACCTCGGATACTCCCTCTTCATGGTCTTGGCTATTATGTTTGCAACAGGCACTGTCGGGTTCCTTTCGTCTTTCTGGTTTGTACATTATTTGTTCTCTTCAGTGAAGCTAGATTGAGGAAGCCTCTTGGTCTTGAAGAGCTGCAAGTAAACAAATCAAACATTGAAGAAGCAGTGGGCGGATTTCGAAAGAACATTCTATTTTACTTTTAATGTCATTTTGTAGGGTATTTCGAAGAGAAAAAAACAATAAAACTCCTAAAGTTTTGTTAAATTCTTTAATAGAAAAAGTCATTGCATCTACTGAAGTAAAGTTTCATCAGTTGGTAGGATGAACATCACATTGTTATCATTTCTCTAGTTTCCTATTAATAGTGTTGAATCTGTTATCTTTGAAAGGGCTTTATCATAATATTAGTGATTCTTGTAACTATGTCTAGTTCTGTTTTTTGTTTGGTTCACCCCGTTATTGTTGTTGCATTTTGTGATATTCTGCTTCAATCTTGAGTTTTTCGAATAGCCTGGACACGATTCCAAGTTGTATTTGTGTTCAATTTTGATGTTTGTTTTATTATGTGGGATGGATATGGGGAACTATTCTCCTCTATTCATCTTCTTCATTATTTGGAATTCAGGACTATCTTGTTCTTCATTTATTGATGTTGCTATCCCCATTTAATCATGCTTTGATTATTTTCTTTGAGAGGAGTGTATCAGAAACAACCTCTCTATGCTTTGTAAATGGATGTCGTTCGCGTAGTTCTTCATTTCTTATAATTGTTGTTGCTTCGTTTGCTTTGTATATTGATGTTGCTATCTCCCTTTAATCATGCTTTGATTATTTTCTTTTAAAAGGAGTGTCTATAAAAAACAACCTCTATTCAGAAGGGACAACGTCGCAACCAATTTGCATGTTCCATTTTATTATATTAGTCTAAAAATATAGAGATTTAGGCCATTAATCGTTAGAAAATCAACCACATATATTTGAAAAAAT</genome_strand>
        <mrna_strand>AGTCATTCTTTGCTTCTGGTTCAGTCGCGATATACATTTTCCTGTACTCCATCAACTATCTAATATTCGACCTCAAGAGCTTAAGCGGCCCTGTTTCCGCCACCCTTTACCTCGGATACTCCCTCTTCATGGTCTTGGCTATTATGTTTGCAACAGGCACTGTCGGGTTCCTTTCGTCTTTCTGGTTTGTACATTATTTGTTCTCTTCAGTGAAGCTAGATTGAGGAAGCCTCTTGGTCTTGAAGAGCTGCAAGTAAACAAATCAAACATTGAAGAAGCAGTGGGCGGATTTCGAAAGAACATTCTATTTTACTTTTAATGTCATTTTGTAGGGTATTTCGAAGAGAAAAAACCAATAAAACTCCTAAAGTTTTGTTAAATTCTTTAATAGAAAAAGTCATTGCATCTACTGAAGTAAAGTTTCATCAGTTGGTAGGATGAACATCACATTGTTATCATTTCTCTAGTTTCCTATTAATAGTGTTGAATCTGTTATCTTTGAAAGGGCTTTATCATAATATTAGTGATTCTTGTACCTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739939" ref_strand="+" ref_description="SGN-E739939 [LC19BF11]">
      <seq>gcttcagtcactatgaattttcctcacatttctactcataatatttcttcaaatcaaacgttttctccaatctgtactaataatccttctaatttctcatcatcgtcgtcttcatcaataccaatttcttcgaattctatccgtttatcatcttcaattgcttactcggaacaactaatcgcgtctcacaatgtcaatcgacgtactaagaatcgcaaaatcaaggtgatatctgcaagaagtgagcctttaaaggtgatgatatcaggtgcccctgcatctggtaaagggactcaatgtgaattgattgtacaaaagtttggattggtgcacatatcaactggtgatctcctacgagctgaattatcggctggtacagatattggaaataaagctaaggagtatatgaacgctggtcgcctggttcctgatgagattgtaacagctatggtgacaacacgattatcaaaggaagatgcaaaagaaaaagggtggcttctggatgggtatccacgaacgttggctcaagcagaaagtctggaaaggttgaatatcagaccagatatctacattgtgcttgatgttcctgatgcgattcttattgacagatgtgttggtagaaggctagatcctctcactggtaaaatataccatgttactaatttccctccagagaccgaggacatcaaagcaaggctcataactcgtcctgatgacacagaggaaaaggtgaaatcacgtctgcaaatatacaagcaaaatgctgaagcaatattaccagtgtactcagatataatgaataagattgatgggaaccgcggcaaagattcagtatttgcagaaattgattccttattgtcacgtgtgcagaaagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="38946" stop="42425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39246" g_stop="39470" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39471" i_stop="39653" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39654" g_stop="39746" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="318" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39747" i_stop="40308" i_length="562">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40309" g_stop="40437" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="447" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40438" i_stop="40519" i_length="82">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40520" g_stop="40654" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="582" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40655" i_stop="41519" i_length="865">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41520" g_stop="41666" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="729" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41667" i_stop="41887" i_length="221">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41888" g_stop="41962" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="804" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41963" i_stop="42050" i_length="88">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42051" g_stop="42125" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="805" r_stop="879" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E739939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39246" e_stop="39470"/>
          <exon e_start="39654" e_stop="39746"/>
          <exon e_start="40309" e_stop="40437"/>
          <exon e_start="40520" e_stop="40654"/>
          <exon e_start="41520" e_stop="41666"/>
          <exon e_start="41888" e_stop="41962"/>
          <exon e_start="42051" e_stop="42125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGTCACTATGAATTTTCCTCACATTTCTACTCATAATATTTCTTCAAATCAAACGTTTTCTCCAATCTGTACTAATAATCCTTCTAATTTCTCATCATCGTCGTCTTCATCAATACCAATTTCTTCGAATTCTATCCGTTTATCATCTTCAATTGCTTACTCGGAACAACTAATCGCGTCTCACAATGTCAATCGACGTACTAAGAATCGCAAAATCAAGGTTAGCATGTATGACTAGTAACGAATTTAAGTTATATACACTATCCGTGTAAAAAGAGTTTTACATGAACAGGTCAGGTCGGGTCGGGTCATATTTGTTTTCAAGTTTACGAATCTCACATTTACACTCACAATGTATAATTTTGTTTATCGAATTAAATTATGGAAGTATTTGTTTCTTCAGGTGATATCTGCAAGAAGTGAGCCTTTAAAGGTGATGATATCAGGTGCCCCTGCATCTGGTAAAGGGACTCAATGTGAATTGATTGTACAAAAGGTTGAATTCTCGATTCCTCTTGTTTTCTTCTGCTAGGTGATGATTAGAATTATCTTTTGACTGGAAGGGGGTAGCAATTTATTTTGCCCGACCAAAACTAGTTAACGATTGGTACATAGTTGATTCAATGTTTACGACGTTGTGTTAAATAGGATTGACCATGACCTATTTTTGAATATGCTAAAGCATTGAAGTAGTTCAATTCTTCTTGTTATGTAGATCATTTTATGCACGTGTTGCATAACGTGCCAAGTGTTCGTTATTTGTTTTTCGTGAACAGAAAAGGATGTAGTGGGATGGATGAAATCCCTCTACCCTTTACAAGAGGTATCGGGTTTGAGCAACGGGAGTGGAGAAATCTCTGGTAGTGAGCGCTTCCTCCTTCAATATTGGAGTTACGCAACACAAATTTTGTTTAGTCAGACCAATGGGTTGATTGAACAACAAAAGTTTGTCTTTTGTGGTGTGACGATTCATGTTGTACTTAATGAAATTTGTGAATGGGAATGTTGGTTGGTGTAAAATCTCCTCTTGAATGATATTTCATCATGGTTTGTTTCAGTTTGGATTGGTGCACATATCAACTGGTGATCTCCTACGAGCTGAATTATCGGCTGGTACAGATATTGGAAATAAAGCTAAGGAGTATATGAACGCTGGTCGCCTGGTTCCTGATGAGATTGTAACAGCTGTATGAGATTTTTCAAGTGTCTTGTTAATGAAAAAAATTAACTTTCGCTTTTTATGATTTTCGAAGTCGACTTCTGTTACAGATGGTGACAACACGATTATCAAAGGAAGATGCAAAAGAAAAAGGGTGGCTTCTGGATGGGTATCCACGAACGTTGGCTCAAGCAGAAAGTCTGGAAAGGTTGAATATCAGACCAGATATCTACATTGTGCTTGATGTACGTCCACTCTACCATTACATATTTGCATTTTCTTTCCCGTCACAAATAAGTGATCTTTTGAAAGTTTACTAAAGATAGGTTAGATGTTTTTGTCATTGTTCCAAATTTTTGATGCTGTATGCGATATGATGTTGCAATGCTGGTAGCGTAGTGCACTTTGAAATGTTTTAGGTTTGATCATAACAGAAATTGAAATATCTTCAGAGTTGAGGATCACTTTAAGTAGGTTGAGTCATTCATACATGTCCAGTGGATAAAGACATTGTAGAAAACATGAAAGCTTGCCTCTAAATGTTGTTTGGACTCTCCACAAATGTTGCCACACCCGTGGTGGATCGTCCAAAAATACACTACTTTTGGAGGATCCAACACGCACCAATCGACAATTTGAAAAGTTTGAGCAATATAACCCTCAGCCATATTATGTTGAGTGATACAGTCAATGACTTCCTTGAACACTACTAGATGAAAGCGCATGGATTGAGAAAAAATAAGTGAAGTCTTCTTGTCATAGCACACATTCGTGAATTGATATGGTGTCCGATGTTCTTCTTGTCATAGCACACATTCATGAATATACCAAAAAGAGGTATAATAGAGCAAGAATGAGATTAAGAATTTGCTTTTAAGCTAAAATTATCTTTTTAAGCATGTTTGGAGTGTTTGTATAAGTTAAAAAGTGCTTATAAAGCACTTAGTTTTAAGATAAATTGTTAATATAAGCCAAAACCATAAGCTAGAGTCTAACTTATGGCTTTTGGCTTATGAGTCAAAAGTGAAGCAAATCAAAGAGGCTAGTCTTCTTCTTCTTCCATTTGATTTGTGTTCGATCTTTTACACAATAAGTCCTTCTCTTCCACAGGTTCCTGATGCGATTCTTATTGACAGATGTGTTGGTAGAAGGCTAGATCCTCTCACTGGTAAAATATACCATGTTACTAATTTCCCTCCAGAGACCGAGGACATCAAAGCAAGGCTCATAACTCGTCCTGATGACACAGAGGAAAAGGTACTTTTAACCCCCATATTGTTTGCCTTGCTTTAGTTTAATAGACGTATACTTGCTTTTAAGACTGGGTTATACAAATCATTTTTTTGCTTCTGATATTCAAGACACCATAATATAGACTAATCCTACGTAGTGCCCATCTTCGATATATCTAGAAAAGCTGAAGCATCTAATATATCCACAAGTCTACAGTTTAACCAGGTGTGCTAAATGTGTTTCAGGTGAAATCACGTCTGCAAATATACAAGCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAGGTAGATTTGGCATTTACTCTTATTATAGTATAATTTTGAAATTCTGTATGTTTTCTAGTGATTTGTACTTATGAGGTGTGGCATACAGATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAA</genome_strand>
        <mrna_strand>GCTTCAGTCACTATGAATTTTCCTCACATTTCTACTCATAATATTTCTTCAAATCAAACGTTTTCTCCAATCTGTACTAATAATCCTTCTAATTTCTCATCATCGTCGTCTTCATCAATACCAATTTCTTCGAATTCTATCCGTTTATCATCTTCAATTGCTTACTCGGAACAACTAATCGCGTCTCACAATGTCAATCGACGTACTAAGAATCGCAAAATCAAG.......................................................................................................................................................................................GTGATATCTGCAAGAAGTGAGCCTTTAAAGGTGATGATATCAGGTGCCCCTGCATCTGGTAAAGGGACTCAATGTGAATTGATTGTACAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGATTGGTGCACATATCAACTGGTGATCTCCTACGAGCTGAATTATCGGCTGGTACAGATATTGGAAATAAAGCTAAGGAGTATATGAACGCTGGTCGCCTGGTTCCTGATGAGATTGTAACAGCT..................................................................................ATGGTGACAACACGATTATCAAAGGAAGATGCAAAAGAAAAAGGGTGGCTTCTGGATGGGTATCCACGAACGTTGGCTCAAGCAGAAAGTCTGGAAAGGTTGAATATCAGACCAGATATCTACATTGTGCTTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGCGATTCTTATTGACAGATGTGTTGGTAGAAGGCTAGATCCTCTCACTGGTAAAATATACCATGTTACTAATTTCCCTCCAGAGACCGAGGACATCAAAGCAAGGCTCATAACTCGTCCTGATGACACAGAGGAAAAG.............................................................................................................................................................................................................................GTGAAATCACGTCTGCAAATATACAAGCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAG........................................................................................ATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541365" ref_strand="+" ref_description="SGN-E541365 [TUS-62-B22]">
      <seq>gcaaaatgctgaagcaatattaccagtgtactcagatataatgaataagattgatgggaaccgcggcaaagattcagtatttgcagaaattgattccttattgtcacgtgtgcagaaagaggaacaagatgcaagaaaatcagaagaatcagcaatttccagtactcgagctgatatggcatctttgagcaaggattggagaggaatacctactagactgaataatattcctcactcaagagaaattagggaatatttctacactgatgtgcttcaggctactcaaagagctgtcaatgatgggaaaactcgtttaaagatagaaatcaatatcccggagctgaatccttcaatggatgtttatcgaataggtactctaatggaacttatccgtgtacttgctctttcatttgctgacgatggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatattagagtacatggattggggtgattatggcgcgttgggaaactttatcaatattggttctataggtggcaaggaggttgaaaaacaagatgacgtgttcattctagtggctccccagaatgctgtcggaaattgcatcatagatgatatgagagctatgactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41614" stop="46274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41914" g_stop="41962" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41963" i_stop="42050" i_length="88">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42051" g_stop="42144" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="143" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42999" g_stop="43048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="193" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43129" g_stop="43254" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="319" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44807" g_stop="44842" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="355" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44843" i_stop="44909" i_length="67">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44910" g_stop="44990" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="436" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45092" g_stop="45230" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="575" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555">
            <donor d_prob="0.315" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45786" g_stop="45865" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="655" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45954" g_stop="45974" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="676" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E541365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41914" e_stop="41962"/>
          <exon e_start="42051" e_stop="42144"/>
          <exon e_start="42999" e_stop="43048"/>
          <exon e_start="43129" e_stop="43254"/>
          <exon e_start="44807" e_stop="44842"/>
          <exon e_start="44910" e_stop="44990"/>
          <exon e_start="45092" e_stop="45230"/>
          <exon e_start="45786" e_stop="45865"/>
          <exon e_start="45954" e_stop="45974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAGGTAGATTTGGCATTTACTCTTATTATAGTATAATTTTGAAATTCTGTATGTTTTCTAGTGATTTGTACTTATGAGGTGTGGCATACAGATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAGGTGTGAACCTTTTTTTTATAGAAGTATCTCTCTTGAGGTTCTTTGTATTCTATGTAGAGCTATGTTTTAACCAAATTGAAATTCCTGCTGATCTCGGCAGCATATAATCCTATAAGAGATGTAAAGATTGCGTAACACATGATTAACCATATGTCTCAATTATCAATCCCCCGCCTTTTGTTCTGCACCCACCTCAATAATTAAACTATATCTCTATTCTTTTTTCTCATATTTGTCATCTTGTTTCTCTTCATGCTGTGAAGCCTGTTTGACTTGAAAAACATTGGAGTAAACTTAATTAAATTAAGATAGGCTTGTCTGATGTTTGCAGTTCAAAGCAAATGGGAACTTAATTAACATGGTATATTTTGTGAAGCTAATATGGATGAAATCAAGATGATAGAGCTTTTGCAGCTTTTCACTTACACTTTATAGTATTCGGAAATTGTTTAAAGCATTTTCTGAGTGTGATCATAGAAGAAACTAAAATACCCATATATAAAACTTGTATAGACTCCAATGTTTCCTTTTCTCTTTTCTTTTTTCTTCTTTTACAATATGCTAAATATACTTTTTAGAGGAAATGTTGCACTCTTGAATATTTGAACAATCATTTATAGCTTTAGGTAATTACATCCTGAAGCAGTGAAATAAAATTTCCTTCAAGCTCATTTCCTTTTGTTTCCCCTAAAAACCAAATACCGAAATAGATGTTCCATTTAACAATAAAAAAGATTTTTTGCTGGACACCTTTTTGAATTTCTTGTATCAACATGCTGACAAACTAAATTAGCAGTCATCACTTAGCTCAATGACACTTTGGACCCTGAAACTCTACCATATTTTGTTTGCAGAAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAGGTAATCATCTGCTAAATCACGAACACAACTTCCCTTCTTTTTTTGAAGGAAAGTTGACCGTTTTCCTTATATCGTTATAGGATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAGGTATGACTCTGCCCTGATTCGAAGGTAACTCAAATATTCAAAAGTAATTCAGATAAGTTTAACATCGAAGTAGTTTGCGTTGGTAGAACTGTTTTACAAGATAATTTTGATTGATTATCATTTTAATTAAGACACCCCCTTCTATCAATCGAAGGGGAGTCTTGTAGCAATGGTGAAGTTGTCTTTGTGTGACCTATAGGTCACGGGCTCAAGCCATGGAAGCGGCCACTAATGCTTGCATTAGGATAGGATGCCTAAATCACAGTGCTTGGGGTGCGGCCCTTCCCCGGACCCTGCTAAAGCTGGATGCTTTGTGCAGTGTGCTGTCTTTTTTATCCCTTCTTTCAACCATTTTATTAAAGTGCCACGTTTTCCAACCACTTTGACTGAGAAGTCGCCTTTCTTAGTGGAAGTAGATACAAGATATTATATTCATATATATGTGGTATACAGTTTTCTGAATATACCATGATATGCCCCCTTGAGTGAGTTGACGAGTTTCTGAGAAGAAAGCCAGTATGTTTCTTCGTCAATCAATGAAGAAATATAACTTGTTATGATACTTTAAATCTGTTGACACATGAGTTTCACTAGATTATTTTACCCTTGAATTTCATATTCAATGGAATCTGGAGACATCTCTTATCTTGTTTCTAAAAATTTATGCTATTGTGAGAACGAACGACTAAGTATTTCAAAAGACTTACGGATAACATGCGATTACTCAGTGGAAATAGTTCCAATGAATAACTCTTCTTATTTGAAGGAAATATGCCATATTCTGGTGTCCACATAACTCGAAACATGGAAAGGTCACCTTTTCTTAATTTTGAGAAAAGAGTAAGAGAGAACTACCAGCTCATGTTCCCACAAACTAGTTTTATAGATAATAAAAGCATGAAAATAGCTAGCTCAAAAGATGAATCTTGTCCCATTCTATTTAATAATATCCTGTAAACTTATAGTATATGCTCTTCGATATTCTATCTAATCTCATATGTTAAGTGTGTTTCGACAACTGTGCTGGTGTCAGAATATGGTGCATAATTTGTTAGGCTTTTTGGGAATAAAATAAGGAAAAGGAGCCCTTGACCCAGTGGCTGAGCTAGAATTTTATCTAAGGTGTGTCAAAATATTAAGAATCAAAATCGTGCAGAAGCCAAGGAGTGACAATATGTAATTTATATACATAAAAAATATTTTTTATTCTAGCAACATAATGTAATTTTCCGACGAAGGGGTGTCGGCCGACACCCCTTAACTATATGTGGCTCCGCCACTGCCTTGACCCACAGGAGGATTTATTCAATAACATAGTTTGGCTCCTATCATATGACACCTTAGGGCTTTCTATTTGATTGTATCTTAAAAATGTGGTTTAATATTGAAAGATCAAATTGCTATGAAATGAGAAAAACTAAGCTGTTCATTTATTTATGCCAGAGAATTAGTTTTATTCTTTATTAAACCTATAGAAGGAATCCAGGCCTTCCCCTATCTACATTTATCGATTTATCCAAGTTATATTAATACCTTTATCTTGATTTAACAGATAGAAATCAATATCCCGGAGCTGAATCCTTCAATGGTGAGAAAACATTTTCTGATCATATGCCCATAGTTTATTTAGGTTTGACAGTATGTTAAATCCACAGGATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAGGTATTGTAGAGATTAAAATTGCACTGATGACTTTCACTTCCTATCCAATATCATGTTTTTAGAAGCATACTGCAACTATAAATGGTCTTCTAAGACATAATATACAAATCTATCCGTGTGCGTTCGTGCACAACATTTCTCTTTTTTATGAGATAGGGGCAGAGCCACAGTAGAAGTTTTGTGTTCAATAGAACAACTTTGGCTCAAACGCTGTAGTTGTATTAAGAAATTCAATGCATCCCGAACCCAGTAAGCAATAAGAGGTGTTCTAAACCTAAAATCGTAGATCCGCCTCTGTTGTGAGGGGTTTATTTGAGAATGTAGTTCTAATATAGCTGATAGTAGAAACTTCATAGCTTTATAAATGTTTCTGTTGTGTGGTGACTATTTGTGTATGTTGTGCAAGTATACACATGCTAACATGAATGCTTAACCCTCAATTTTTTCTGAGGTTAGCATTGCGATAAAACACAATATAATCACACTCTTGAATTCGCTTCTTTCACGATTGCTGGTCAACTCCATGTTTACTACAAATTTTAATGTGTTTTTCAGGTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGATGTGATTCACTCTGAACCATTTTCTGTATTTTCCTCATACTGCTCTTATTCAGTTTATTAAATTTTTTCTCTCCTGTTGAATAATGCAGGATATGAGAGCTATGACTGAT</genome_strand>
        <mrna_strand>GCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAG........................................................................................ATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG................................................................................GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG...................................................................GATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT........................................................................................GATATGAGAGCTATGACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295915" ref_strand="+" ref_description="SGN-E295915 [cLET-27-O16]">
      <seq>caaaatgctgaagcaatattaccagtgtactcacatataatgaataagattgatgggaaccgcggcaaagattcagtatttgcagaaattgattccttattgtcacgtgtgcagaaagaggaacaagatgcaagaaaatcagaagaatcagcaatttccagtactcgagctgatatggcatctttgagcaaggattggagaggaatacctactagactgaataatattcctcactcaagagaaattagggaatatttctacactgatgtgcttcaggcttctcaaaaaacctggcaatgttgggaaaactcgtttaaagatagaaatcaatatcccggagctgaatccttcaatggatgtttatcgaataggtactctaatggaacttatccgngtacttgctctttcatttgctgacgatggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41615" stop="45468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41915" g_stop="41962" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41963" i_stop="42050" i_length="88">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42051" g_stop="42144" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="142" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42999" g_stop="43048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="192" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43129" g_stop="43254" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="319" r_length="127" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44807" g_stop="44842" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="355" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44843" i_stop="44909" i_length="67">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44910" g_stop="44990" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="436" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45092" g_stop="45168" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="513" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E295915" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41915" e_stop="41962"/>
          <exon e_start="42051" e_stop="42144"/>
          <exon e_start="42999" e_stop="43048"/>
          <exon e_start="43129" e_stop="43254"/>
          <exon e_start="44807" e_stop="44842"/>
          <exon e_start="44910" e_stop="44990"/>
          <exon e_start="45092" e_stop="45168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAGGTAGATTTGGCATTTACTCTTATTATAGTATAATTTTGAAATTCTGTATGTTTTCTAGTGATTTGTACTTATGAGGTGTGGCATACAGATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAGGTGTGAACCTTTTTTTTATAGAAGTATCTCTCTTGAGGTTCTTTGTATTCTATGTAGAGCTATGTTTTAACCAAATTGAAATTCCTGCTGATCTCGGCAGCATATAATCCTATAAGAGATGTAAAGATTGCGTAACACATGATTAACCATATGTCTCAATTATCAATCCCCCGCCTTTTGTTCTGCACCCACCTCAATAATTAAACTATATCTCTATTCTTTTTTCTCATATTTGTCATCTTGTTTCTCTTCATGCTGTGAAGCCTGTTTGACTTGAAAAACATTGGAGTAAACTTAATTAAATTAAGATAGGCTTGTCTGATGTTTGCAGTTCAAAGCAAATGGGAACTTAATTAACATGGTATATTTTGTGAAGCTAATATGGATGAAATCAAGATGATAGAGCTTTTGCAGCTTTTCACTTACACTTTATAGTATTCGGAAATTGTTTAAAGCATTTTCTGAGTGTGATCATAGAAGAAACTAAAATACCCATATATAAAACTTGTATAGACTCCAATGTTTCCTTTTCTCTTTTCTTTTTTCTTCTTTTACAATATGCTAAATATACTTTTTAGAGGAAATGTTGCACTCTTGAATATTTGAACAATCATTTATAGCTTTAGGTAATTACATCCTGAAGCAGTGAAATAAAATTTCCTTCAAGCTCATTTCCTTTTGTTTCCCCTAAAAACCAAATACCGAAATAGATGTTCCATTTAACAATAAAAAAGATTTTTTGCTGGACACCTTTTTGAATTTCTTGTATCAACATGCTGACAAACTAAATTAGCAGTCATCACTTAGCTCAATGACACTTTGGACCCTGAAACTCTACCATATTTTGTTTGCAGAAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAGGTAATCATCTGCTAAATCACGAACACAACTTCCCTTCTTTTTTTGAAGGAAAGTTGACCGTTTTCCTTATATCGTTATAGGATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTC-AAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAGGTATGACTCTGCCCTGATTCGAAGGTAACTCAAATATTCAAAAGTAATTCAGATAAGTTTAACATCGAAGTAGTTTGCGTTGGTAGAACTGTTTTACAAGATAATTTTGATTGATTATCATTTTAATTAAGACACCCCCTTCTATCAATCGAAGGGGAGTCTTGTAGCAATGGTGAAGTTGTCTTTGTGTGACCTATAGGTCACGGGCTCAAGCCATGGAAGCGGCCACTAATGCTTGCATTAGGATAGGATGCCTAAATCACAGTGCTTGGGGTGCGGCCCTTCCCCGGACCCTGCTAAAGCTGGATGCTTTGTGCAGTGTGCTGTCTTTTTTATCCCTTCTTTCAACCATTTTATTAAAGTGCCACGTTTTCCAACCACTTTGACTGAGAAGTCGCCTTTCTTAGTGGAAGTAGATACAAGATATTATATTCATATATATGTGGTATACAGTTTTCTGAATATACCATGATATGCCCCCTTGAGTGAGTTGACGAGTTTCTGAGAAGAAAGCCAGTATGTTTCTTCGTCAATCAATGAAGAAATATAACTTGTTATGATACTTTAAATCTGTTGACACATGAGTTTCACTAGATTATTTTACCCTTGAATTTCATATTCAATGGAATCTGGAGACATCTCTTATCTTGTTTCTAAAAATTTATGCTATTGTGAGAACGAACGACTAAGTATTTCAAAAGACTTACGGATAACATGCGATTACTCAGTGGAAATAGTTCCAATGAATAACTCTTCTTATTTGAAGGAAATATGCCATATTCTGGTGTCCACATAACTCGAAACATGGAAAGGTCACCTTTTCTTAATTTTGAGAAAAGAGTAAGAGAGAACTACCAGCTCATGTTCCCACAAACTAGTTTTATAGATAATAAAAGCATGAAAATAGCTAGCTCAAAAGATGAATCTTGTCCCATTCTATTTAATAATATCCTGTAAACTTATAGTATATGCTCTTCGATATTCTATCTAATCTCATATGTTAAGTGTGTTTCGACAACTGTGCTGGTGTCAGAATATGGTGCATAATTTGTTAGGCTTTTTGGGAATAAAATAAGGAAAAGGAGCCCTTGACCCAGTGGCTGAGCTAGAATTTTATCTAAGGTGTGTCAAAATATTAAGAATCAAAATCGTGCAGAAGCCAAGGAGTGACAATATGTAATTTATATACATAAAAAATATTTTTTATTCTAGCAACATAATGTAATTTTCCGACGAAGGGGTGTCGGCCGACACCCCTTAACTATATGTGGCTCCGCCACTGCCTTGACCCACAGGAGGATTTATTCAATAACATAGTTTGGCTCCTATCATATGACACCTTAGGGCTTTCTATTTGATTGTATCTTAAAAATGTGGTTTAATATTGAAAGATCAAATTGCTATGAAATGAGAAAAACTAAGCTGTTCATTTATTTATGCCAGAGAATTAGTTTTATTCTTTATTAAACCTATAGAAGGAATCCAGGCCTTCCCCTATCTACATTTATCGATTTATCCAAGTTATATTAATACCTTTATCTTGATTTAACAGATAGAAATCAATATCCCGGAGCTGAATCCTTCAATGGTGAGAAAACATTTTCTGATCATATGCCCATAGTTTATTTAGGTTTGACAGTATGTTAAATCCACAGGATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATT</genome_strand>
        <mrna_strand>CAAAATGCTGAAGCAATATTACCAGTGTACTCACATATAATGAATAAG........................................................................................ATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG................................................................................GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTTCTCAAAAAACCTGGCAATGTTGGGAAAACTCGTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG...................................................................GATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGNGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345285" ref_strand="+" ref_description="SGN-E345285 [cTOF-13-B4]">
      <seq>agaaagaggaacaagatgcaagaaaatcagaagaatcagcaatttccagtactcgagctgatatggcatctttgagcaaggattggagaggaatacctactagactgaataatattcctcactcaagagaaattagggaatatttctacactgatgtgcttcaggctactcaaagagctgtcaatgatgggaaaactcgtttaaagatagaaatcaatatcccggagctgaatccttcaatggtactctaatggaacttatccgtgtacttgctctttcatttgctgacgatggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatattagagtacatggattggggtgattatggcgcgttgggaaactttatcaatattggttctataggtggcaaggaggttgaaaaacaagatgacgtgttcattctagtggctccccagaatgctgtcggaaattgcatcatagatgatatgagagctatgactgatgcagccggtaaccgaccgattattctagtcaaccccaaactaaaggatttacctgcttcaagtggtatcatgcaaacaatgggtagagataaaagattggaatatgctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41815" stop="47267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42115" g_stop="42144" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42999" g_stop="43048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="80" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43129" g_stop="43254" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="206" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44807" g_stop="44842" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="242" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44843" i_stop="44925" i_length="83">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.661" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44926" g_stop="44990" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="307" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45092" g_stop="45230" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="446" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555">
            <donor d_prob="0.315" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45786" g_stop="45865" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="526" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45954" g_stop="46019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="592" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46813" g_stop="46842" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="622" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="46930" g_stop="46967" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="660" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E345285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42115" e_stop="42144"/>
          <exon e_start="42999" e_stop="43048"/>
          <exon e_start="43129" e_stop="43254"/>
          <exon e_start="44807" e_stop="44842"/>
          <exon e_start="44926" e_stop="44990"/>
          <exon e_start="45092" e_stop="45230"/>
          <exon e_start="45786" e_stop="45865"/>
          <exon e_start="45954" e_stop="46019"/>
          <exon e_start="46813" e_stop="46842"/>
          <exon e_start="46930" e_stop="46967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGGAACAAGATGCAAGAAAATCAGGTGTGAACCTTTTTTTTATAGAAGTATCTCTCTTGAGGTTCTTTGTATTCTATGTAGAGCTATGTTTTAACCAAATTGAAATTCCTGCTGATCTCGGCAGCATATAATCCTATAAGAGATGTAAAGATTGCGTAACACATGATTAACCATATGTCTCAATTATCAATCCCCCGCCTTTTGTTCTGCACCCACCTCAATAATTAAACTATATCTCTATTCTTTTTTCTCATATTTGTCATCTTGTTTCTCTTCATGCTGTGAAGCCTGTTTGACTTGAAAAACATTGGAGTAAACTTAATTAAATTAAGATAGGCTTGTCTGATGTTTGCAGTTCAAAGCAAATGGGAACTTAATTAACATGGTATATTTTGTGAAGCTAATATGGATGAAATCAAGATGATAGAGCTTTTGCAGCTTTTCACTTACACTTTATAGTATTCGGAAATTGTTTAAAGCATTTTCTGAGTGTGATCATAGAAGAAACTAAAATACCCATATATAAAACTTGTATAGACTCCAATGTTTCCTTTTCTCTTTTCTTTTTTCTTCTTTTACAATATGCTAAATATACTTTTTAGAGGAAATGTTGCACTCTTGAATATTTGAACAATCATTTATAGCTTTAGGTAATTACATCCTGAAGCAGTGAAATAAAATTTCCTTCAAGCTCATTTCCTTTTGTTTCCCCTAAAAACCAAATACCGAAATAGATGTTCCATTTAACAATAAAAAAGATTTTTTGCTGGACACCTTTTTGAATTTCTTGTATCAACATGCTGACAAACTAAATTAGCAGTCATCACTTAGCTCAATGACACTTTGGACCCTGAAACTCTACCATATTTTGTTTGCAGAAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAGGTAATCATCTGCTAAATCACGAACACAACTTCCCTTCTTTTTTTGAAGGAAAGTTGACCGTTTTCCTTATATCGTTATAGGATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAGGTATGACTCTGCCCTGATTCGAAGGTAACTCAAATATTCAAAAGTAATTCAGATAAGTTTAACATCGAAGTAGTTTGCGTTGGTAGAACTGTTTTACAAGATAATTTTGATTGATTATCATTTTAATTAAGACACCCCCTTCTATCAATCGAAGGGGAGTCTTGTAGCAATGGTGAAGTTGTCTTTGTGTGACCTATAGGTCACGGGCTCAAGCCATGGAAGCGGCCACTAATGCTTGCATTAGGATAGGATGCCTAAATCACAGTGCTTGGGGTGCGGCCCTTCCCCGGACCCTGCTAAAGCTGGATGCTTTGTGCAGTGTGCTGTCTTTTTTATCCCTTCTTTCAACCATTTTATTAAAGTGCCACGTTTTCCAACCACTTTGACTGAGAAGTCGCCTTTCTTAGTGGAAGTAGATACAAGATATTATATTCATATATATGTGGTATACAGTTTTCTGAATATACCATGATATGCCCCCTTGAGTGAGTTGACGAGTTTCTGAGAAGAAAGCCAGTATGTTTCTTCGTCAATCAATGAAGAAATATAACTTGTTATGATACTTTAAATCTGTTGACACATGAGTTTCACTAGATTATTTTACCCTTGAATTTCATATTCAATGGAATCTGGAGACATCTCTTATCTTGTTTCTAAAAATTTATGCTATTGTGAGAACGAACGACTAAGTATTTCAAAAGACTTACGGATAACATGCGATTACTCAGTGGAAATAGTTCCAATGAATAACTCTTCTTATTTGAAGGAAATATGCCATATTCTGGTGTCCACATAACTCGAAACATGGAAAGGTCACCTTTTCTTAATTTTGAGAAAAGAGTAAGAGAGAACTACCAGCTCATGTTCCCACAAACTAGTTTTATAGATAATAAAAGCATGAAAATAGCTAGCTCAAAAGATGAATCTTGTCCCATTCTATTTAATAATATCCTGTAAACTTATAGTATATGCTCTTCGATATTCTATCTAATCTCATATGTTAAGTGTGTTTCGACAACTGTGCTGGTGTCAGAATATGGTGCATAATTTGTTAGGCTTTTTGGGAATAAAATAAGGAAAAGGAGCCCTTGACCCAGTGGCTGAGCTAGAATTTTATCTAAGGTGTGTCAAAATATTAAGAATCAAAATCGTGCAGAAGCCAAGGAGTGACAATATGTAATTTATATACATAAAAAATATTTTTTATTCTAGCAACATAATGTAATTTTCCGACGAAGGGGTGTCGGCCGACACCCCTTAACTATATGTGGCTCCGCCACTGCCTTGACCCACAGGAGGATTTATTCAATAACATAGTTTGGCTCCTATCATATGACACCTTAGGGCTTTCTATTTGATTGTATCTTAAAAATGTGGTTTAATATTGAAAGATCAAATTGCTATGAAATGAGAAAAACTAAGCTGTTCATTTATTTATGCCAGAGAATTAGTTTTATTCTTTATTAAACCTATAGAAGGAATCCAGGCCTTCCCCTATCTACATTTATCGATTTATCCAAGTTATATTAATACCTTTATCTTGATTTAACAGATAGAAATCAATATCCCGGAGCTGAATCCTTCAATGGTGAGAAAACATTTTCTGATCATATGCCCATAGTTTATTTAGGTTTGACAGTATGTTAAATCCACAGGATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAGGTATTGTAGAGATTAAAATTGCACTGATGACTTTCACTTCCTATCCAATATCATGTTTTTAGAAGCATACTGCAACTATAAATGGTCTTCTAAGACATAATATACAAATCTATCCGTGTGCGTTCGTGCACAACATTTCTCTTTTTTATGAGATAGGGGCAGAGCCACAGTAGAAGTTTTGTGTTCAATAGAACAACTTTGGCTCAAACGCTGTAGTTGTATTAAGAAATTCAATGCATCCCGAACCCAGTAAGCAATAAGAGGTGTTCTAAACCTAAAATCGTAGATCCGCCTCTGTTGTGAGGGGTTTATTTGAGAATGTAGTTCTAATATAGCTGATAGTAGAAACTTCATAGCTTTATAAATGTTTCTGTTGTGTGGTGACTATTTGTGTATGTTGTGCAAGTATACACATGCTAACATGAATGCTTAACCCTCAATTTTTTCTGAGGTTAGCATTGCGATAAAACACAATATAATCACACTCTTGAATTCGCTTCTTTCACGATTGCTGGTCAACTCCATGTTTACTACAAATTTTAATGTGTTTTTCAGGTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGATGTGATTCACTCTGAACCATTTTCTGTATTTTCCTCATACTGCTCTTATTCAGTTTATTAAATTTTTTCTCTCCTGTTGAATAATGCAGGATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCATAGCTTGACTCAACTTCTCCTCGATGATGAAATGATCATAAATGGCTTGACTTTGATCTATCACATACTAATTGTGCAGGATTTACCTGCTTCAAGTGGTATCATGCAAGTAAGTATCGTAACCATTGAACCATAATGGCCAACAGTAAAGGGAACTTCTTCCTACGTTCTGATTGATTTTCTCTCTGTCTTCAAGACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATT</genome_strand>
        <mrna_strand>AGAAAGAGGAACAAGATGCAAGAAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG................................................................................GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG...................................................................................GTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT........................................................................................GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACCTGCTTCAAGTGGTATCATGCAA.......................................................................................ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358723" ref_strand="+" ref_description="SGN-E358723 [cLHT-24-A21]">
      <seq>acaagatgcaagaaaatcagaagaatcagcaatttccagtactcgagctgataaggcatctttgagcaaggattggagaggaatacctactagactgaacaatattcctcactcaagagaaattagggaatatttctacactgatgtgcttcaggctactcaaagagctgtcaatgatgggaaaactcgtttaaagatagaaatcaatatcccggagctgaatccttcaatggatgtttatcgaataggtactctaatggaacttatccgtgtacttgctctttcatttgctgacgatggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatattagagtacatggattggggtgattatggcgcgttggggaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="41825" stop="45511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42125" g_stop="42144" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42999" g_stop="43048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="70" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43129" g_stop="43254" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="196" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44807" g_stop="44842" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="232" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44843" i_stop="44909" i_length="67">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44910" g_stop="44990" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="313" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45092" g_stop="45211" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="433" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E358723" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42125" e_stop="42144"/>
          <exon e_start="42999" e_stop="43048"/>
          <exon e_start="43129" e_stop="43254"/>
          <exon e_start="44807" e_stop="44842"/>
          <exon e_start="44910" e_stop="44990"/>
          <exon e_start="45092" e_stop="45211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGATGCAAGAAAATCAGGTGTGAACCTTTTTTTTATAGAAGTATCTCTCTTGAGGTTCTTTGTATTCTATGTAGAGCTATGTTTTAACCAAATTGAAATTCCTGCTGATCTCGGCAGCATATAATCCTATAAGAGATGTAAAGATTGCGTAACACATGATTAACCATATGTCTCAATTATCAATCCCCCGCCTTTTGTTCTGCACCCACCTCAATAATTAAACTATATCTCTATTCTTTTTTCTCATATTTGTCATCTTGTTTCTCTTCATGCTGTGAAGCCTGTTTGACTTGAAAAACATTGGAGTAAACTTAATTAAATTAAGATAGGCTTGTCTGATGTTTGCAGTTCAAAGCAAATGGGAACTTAATTAACATGGTATATTTTGTGAAGCTAATATGGATGAAATCAAGATGATAGAGCTTTTGCAGCTTTTCACTTACACTTTATAGTATTCGGAAATTGTTTAAAGCATTTTCTGAGTGTGATCATAGAAGAAACTAAAATACCCATATATAAAACTTGTATAGACTCCAATGTTTCCTTTTCTCTTTTCTTTTTTCTTCTTTTACAATATGCTAAATATACTTTTTAGAGGAAATGTTGCACTCTTGAATATTTGAACAATCATTTATAGCTTTAGGTAATTACATCCTGAAGCAGTGAAATAAAATTTCCTTCAAGCTCATTTCCTTTTGTTTCCCCTAAAAACCAAATACCGAAATAGATGTTCCATTTAACAATAAAAAAGATTTTTTGCTGGACACCTTTTTGAATTTCTTGTATCAACATGCTGACAAACTAAATTAGCAGTCATCACTTAGCTCAATGACACTTTGGACCCTGAAACTCTACCATATTTTGTTTGCAGAAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAGGTAATCATCTGCTAAATCACGAACACAACTTCCCTTCTTTTTTTGAAGGAAAGTTGACCGTTTTCCTTATATCGTTATAGGATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAGGTATGACTCTGCCCTGATTCGAAGGTAACTCAAATATTCAAAAGTAATTCAGATAAGTTTAACATCGAAGTAGTTTGCGTTGGTAGAACTGTTTTACAAGATAATTTTGATTGATTATCATTTTAATTAAGACACCCCCTTCTATCAATCGAAGGGGAGTCTTGTAGCAATGGTGAAGTTGTCTTTGTGTGACCTATAGGTCACGGGCTCAAGCCATGGAAGCGGCCACTAATGCTTGCATTAGGATAGGATGCCTAAATCACAGTGCTTGGGGTGCGGCCCTTCCCCGGACCCTGCTAAAGCTGGATGCTTTGTGCAGTGTGCTGTCTTTTTTATCCCTTCTTTCAACCATTTTATTAAAGTGCCACGTTTTCCAACCACTTTGACTGAGAAGTCGCCTTTCTTAGTGGAAGTAGATACAAGATATTATATTCATATATATGTGGTATACAGTTTTCTGAATATACCATGATATGCCCCCTTGAGTGAGTTGACGAGTTTCTGAGAAGAAAGCCAGTATGTTTCTTCGTCAATCAATGAAGAAATATAACTTGTTATGATACTTTAAATCTGTTGACACATGAGTTTCACTAGATTATTTTACCCTTGAATTTCATATTCAATGGAATCTGGAGACATCTCTTATCTTGTTTCTAAAAATTTATGCTATTGTGAGAACGAACGACTAAGTATTTCAAAAGACTTACGGATAACATGCGATTACTCAGTGGAAATAGTTCCAATGAATAACTCTTCTTATTTGAAGGAAATATGCCATATTCTGGTGTCCACATAACTCGAAACATGGAAAGGTCACCTTTTCTTAATTTTGAGAAAAGAGTAAGAGAGAACTACCAGCTCATGTTCCCACAAACTAGTTTTATAGATAATAAAAGCATGAAAATAGCTAGCTCAAAAGATGAATCTTGTCCCATTCTATTTAATAATATCCTGTAAACTTATAGTATATGCTCTTCGATATTCTATCTAATCTCATATGTTAAGTGTGTTTCGACAACTGTGCTGGTGTCAGAATATGGTGCATAATTTGTTAGGCTTTTTGGGAATAAAATAAGGAAAAGGAGCCCTTGACCCAGTGGCTGAGCTAGAATTTTATCTAAGGTGTGTCAAAATATTAAGAATCAAAATCGTGCAGAAGCCAAGGAGTGACAATATGTAATTTATATACATAAAAAATATTTTTTATTCTAGCAACATAATGTAATTTTCCGACGAAGGGGTGTCGGCCGACACCCCTTAACTATATGTGGCTCCGCCACTGCCTTGACCCACAGGAGGATTTATTCAATAACATAGTTTGGCTCCTATCATATGACACCTTAGGGCTTTCTATTTGATTGTATCTTAAAAATGTGGTTTAATATTGAAAGATCAAATTGCTATGAAATGAGAAAAACTAAGCTGTTCATTTATTTATGCCAGAGAATTAGTTTTATTCTTTATTAAACCTATAGAAGGAATCCAGGCCTTCCCCTATCTACATTTATCGATTTATCCAAGTTATATTAATACCTTTATCTTGATTTAACAGATAGAAATCAATATCCCGGAGCTGAATCCTTCAATGGTGAGAAAACATTTTCTGATCATATGCCCATAGTTTATTTAGGTTTGACAGTATGTTAAATCCACAGGATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTT</genome_strand>
        <mrna_strand>ACAAGATGCAAGAAAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCAGCAATTTCCAGTACTCGAGCTGATAAGGCATCTTTGAGCAAG................................................................................GATTGGAGAGGAATACCTACTAGACTGAACAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG...................................................................GATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342231" ref_strand="+" ref_description="SGN-E342231 [cTOF-8-C19]">
      <seq>caagatgcaagaaaatcagaagaatcagcaatttccagtactcgagctgatatggcatctttgagcaaggattggagaggaatacctactagactgaataatattcctcactcaagagaaattagggaatatttctacactgatgtgcttcaggctactcaaagagctgacaatgatgggaaaactcgtttaaagatagaaatcaatatcccggagctgaatccttcaatggatgtttatcgaataggtactctaatggaacttatccgtgtacttgctctttcatttgctgacgatggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatattagagtacatggattggggtgattatggcgcgttgggaaactttatcaatattggttctataggtggcaaggaggttgaaaaacaagatgacgtgttcattctagtggctccccagaatgctgtcggaaattgcatcatagatgatatgagagctatgactgatgcagccggtaaccgaccgattattctagtcaaccccaaactaaaggatttacctgcttcaagtggtatcatgcaaacaatgggtagagataaaagattggaatatgctgcattgtttgagatatgctatcaattccggctactctactatgcaggaacacaatatcctattatgggggcactcaggatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42696" stop="47342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42999" g_stop="43048" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="69" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43129" g_stop="43254" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="195" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44807" g_stop="44842" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="231" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44843" i_stop="44909" i_length="67">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44910" g_stop="44990" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="312" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45092" g_stop="45230" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="451" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555">
            <donor d_prob="0.315" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45786" g_stop="45865" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="531" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45954" g_stop="46019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="597" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46813" g_stop="46842" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="627" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46930" g_stop="47039" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="737" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E342231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42999" e_stop="43048"/>
          <exon e_start="43129" e_stop="43254"/>
          <exon e_start="44807" e_stop="44842"/>
          <exon e_start="44910" e_stop="44990"/>
          <exon e_start="45092" e_stop="45230"/>
          <exon e_start="45786" e_stop="45865"/>
          <exon e_start="45954" e_stop="46019"/>
          <exon e_start="46813" e_stop="46842"/>
          <exon e_start="46930" e_stop="47039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAGGTAATCATCTGCTAAATCACGAACACAACTTCCCTTCTTTTTTTGAAGGAAAGTTGACCGTTTTCCTTATATCGTTATAGGATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAGGTATGACTCTGCCCTGATTCGAAGGTAACTCAAATATTCAAAAGTAATTCAGATAAGTTTAACATCGAAGTAGTTTGCGTTGGTAGAACTGTTTTACAAGATAATTTTGATTGATTATCATTTTAATTAAGACACCCCCTTCTATCAATCGAAGGGGAGTCTTGTAGCAATGGTGAAGTTGTCTTTGTGTGACCTATAGGTCACGGGCTCAAGCCATGGAAGCGGCCACTAATGCTTGCATTAGGATAGGATGCCTAAATCACAGTGCTTGGGGTGCGGCCCTTCCCCGGACCCTGCTAAAGCTGGATGCTTTGTGCAGTGTGCTGTCTTTTTTATCCCTTCTTTCAACCATTTTATTAAAGTGCCACGTTTTCCAACCACTTTGACTGAGAAGTCGCCTTTCTTAGTGGAAGTAGATACAAGATATTATATTCATATATATGTGGTATACAGTTTTCTGAATATACCATGATATGCCCCCTTGAGTGAGTTGACGAGTTTCTGAGAAGAAAGCCAGTATGTTTCTTCGTCAATCAATGAAGAAATATAACTTGTTATGATACTTTAAATCTGTTGACACATGAGTTTCACTAGATTATTTTACCCTTGAATTTCATATTCAATGGAATCTGGAGACATCTCTTATCTTGTTTCTAAAAATTTATGCTATTGTGAGAACGAACGACTAAGTATTTCAAAAGACTTACGGATAACATGCGATTACTCAGTGGAAATAGTTCCAATGAATAACTCTTCTTATTTGAAGGAAATATGCCATATTCTGGTGTCCACATAACTCGAAACATGGAAAGGTCACCTTTTCTTAATTTTGAGAAAAGAGTAAGAGAGAACTACCAGCTCATGTTCCCACAAACTAGTTTTATAGATAATAAAAGCATGAAAATAGCTAGCTCAAAAGATGAATCTTGTCCCATTCTATTTAATAATATCCTGTAAACTTATAGTATATGCTCTTCGATATTCTATCTAATCTCATATGTTAAGTGTGTTTCGACAACTGTGCTGGTGTCAGAATATGGTGCATAATTTGTTAGGCTTTTTGGGAATAAAATAAGGAAAAGGAGCCCTTGACCCAGTGGCTGAGCTAGAATTTTATCTAAGGTGTGTCAAAATATTAAGAATCAAAATCGTGCAGAAGCCAAGGAGTGACAATATGTAATTTATATACATAAAAAATATTTTTTATTCTAGCAACATAATGTAATTTTCCGACGAAGGGGTGTCGGCCGACACCCCTTAACTATATGTGGCTCCGCCACTGCCTTGACCCACAGGAGGATTTATTCAATAACATAGTTTGGCTCCTATCATATGACACCTTAGGGCTTTCTATTTGATTGTATCTTAAAAATGTGGTTTAATATTGAAAGATCAAATTGCTATGAAATGAGAAAAACTAAGCTGTTCATTTATTTATGCCAGAGAATTAGTTTTATTCTTTATTAAACCTATAGAAGGAATCCAGGCCTTCCCCTATCTACATTTATCGATTTATCCAAGTTATATTAATACCTTTATCTTGATTTAACAGATAGAAATCAATATCCCGGAGCTGAATCCTTCAATGGTGAGAAAACATTTTCTGATCATATGCCCATAGTTTATTTAGGTTTGACAGTATGTTAAATCCACAGGATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAGGTATTGTAGAGATTAAAATTGCACTGATGACTTTCACTTCCTATCCAATATCATGTTTTTAGAAGCATACTGCAACTATAAATGGTCTTCTAAGACATAATATACAAATCTATCCGTGTGCGTTCGTGCACAACATTTCTCTTTTTTATGAGATAGGGGCAGAGCCACAGTAGAAGTTTTGTGTTCAATAGAACAACTTTGGCTCAAACGCTGTAGTTGTATTAAGAAATTCAATGCATCCCGAACCCAGTAAGCAATAAGAGGTGTTCTAAACCTAAAATCGTAGATCCGCCTCTGTTGTGAGGGGTTTATTTGAGAATGTAGTTCTAATATAGCTGATAGTAGAAACTTCATAGCTTTATAAATGTTTCTGTTGTGTGGTGACTATTTGTGTATGTTGTGCAAGTATACACATGCTAACATGAATGCTTAACCCTCAATTTTTTCTGAGGTTAGCATTGCGATAAAACACAATATAATCACACTCTTGAATTCGCTTCTTTCACGATTGCTGGTCAACTCCATGTTTACTACAAATTTTAATGTGTTTTTCAGGTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGATGTGATTCACTCTGAACCATTTTCTGTATTTTCCTCATACTGCTCTTATTCAGTTTATTAAATTTTTTCTCTCCTGTTGAATAATGCAGGATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCATAGCTTGACTCAACTTCTCCTCGATGATGAAATGATCATAAATGGCTTGACTTTGATCTATCACATACTAATTGTGCAGGATTTACCTGCTTCAAGTGGTATCATGCAAGTAAGTATCGTAACCATTGAACCATAATGGCCAACAGTAAAGGGAACTTCTTCCTACGTTCTGATTGATTTTCTCTCTGTCTTCAAGACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG</genome_strand>
        <mrna_strand>AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG................................................................................GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGACAATGATGGGAAAACTCGTTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG...................................................................GATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT........................................................................................GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACCTGCTTCAAGTGGTATCATGCAA.......................................................................................ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261372" ref_strand="+" ref_description="SGN-E261372 [cLEG-57-E10]">
      <seq>tacttgctctttcatttgctgacgatggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatattagagtacatggattggggtgattatggcgcgttgggaaactttatcaatattggttctataggtggcaaggaggttgaaaaacaagatgacgtgttcattctagtggctccccagaatgctgtcggaaattgcatcatagatgatatgagagctatgactgatgcagccggtaaccgaccgattattctagtcaaccccaaactaaaggatttacctgcttcaagtggtatcatgcaaacaatgggtagagataaaagattggaatatgctgcattgtttgagatatgctatcaattccggctactctactatgcaggaacacaatatcctattatgggggcactcaggatgtcgtacccgtatccttatgagttatacaagagagtcgatgaatcaccggggaaggagaaatacatatccttggcaacatttgcaaagaggccaagtattgatgaaatgaacgatgccttcgaanggaaatcaagaaatcaagagaaaaaagcagagggattttggggcttcttgagtggtatactataagcatcgatggagaatgcacaaacatcatgatatcttctatgcaacatctacatttgatcatccaaaactgacgggtaaatcatcttctcttcgtttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44650" stop="48851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44950" g_stop="44990" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45092" g_stop="45230" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="180" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555">
            <donor d_prob="0.315" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45786" g_stop="45865" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="260" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45954" g_stop="46019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="326" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46813" g_stop="46842" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="356" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46930" g_stop="47039" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="466" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47040" i_stop="48050" i_length="1011">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48051" g_stop="48188" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="604" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48189" i_stop="48303" i_length="115">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48304" g_stop="48333" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="634" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="48334" i_stop="48426" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="48427" g_stop="48551" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="759" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E261372" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44950" e_stop="44990"/>
          <exon e_start="45092" e_stop="45230"/>
          <exon e_start="45786" e_stop="45865"/>
          <exon e_start="45954" e_stop="46019"/>
          <exon e_start="46813" e_stop="46842"/>
          <exon e_start="46930" e_stop="47039"/>
          <exon e_start="48051" e_stop="48188"/>
          <exon e_start="48304" e_stop="48333"/>
          <exon e_start="48427" e_stop="48551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAGGTATTGTAGAGATTAAAATTGCACTGATGACTTTCACTTCCTATCCAATATCATGTTTTTAGAAGCATACTGCAACTATAAATGGTCTTCTAAGACATAATATACAAATCTATCCGTGTGCGTTCGTGCACAACATTTCTCTTTTTTATGAGATAGGGGCAGAGCCACAGTAGAAGTTTTGTGTTCAATAGAACAACTTTGGCTCAAACGCTGTAGTTGTATTAAGAAATTCAATGCATCCCGAACCCAGTAAGCAATAAGAGGTGTTCTAAACCTAAAATCGTAGATCCGCCTCTGTTGTGAGGGGTTTATTTGAGAATGTAGTTCTAATATAGCTGATAGTAGAAACTTCATAGCTTTATAAATGTTTCTGTTGTGTGGTGACTATTTGTGTATGTTGTGCAAGTATACACATGCTAACATGAATGCTTAACCCTCAATTTTTTCTGAGGTTAGCATTGCGATAAAACACAATATAATCACACTCTTGAATTCGCTTCTTTCACGATTGCTGGTCAACTCCATGTTTACTACAAATTTTAATGTGTTTTTCAGGTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGATGTGATTCACTCTGAACCATTTTCTGTATTTTCCTCATACTGCTCTTATTCAGTTTATTAAATTTTTTCTCTCCTGTTGAATAATGCAGGATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCATAGCTTGACTCAACTTCTCCTCGATGATGAAATGATCATAAATGGCTTGACTTTGATCTATCACATACTAATTGTGCAGGATTTACCTGCTTCAAGTGGTATCATGCAAGTAAGTATCGTAACCATTGAACCATAATGGCCAACAGTAAAGGGAACTTCTTCCTACGTTCTGATTGATTTTCTCTCTGTCTTCAAGACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAGGTTAGATTTGTTTCTATGCTATTTGATTGGTTTGTCATAACATGATCATGAAGAAGAAGAGCAACTTAAAATGGCATGAAAATGCTTTCGTCTTTTTTCGGTTTGGTGAGATAAAATGTGGATTCACGGATCACTCCTTTGTCATGACTGATGTCACTTTTTTTCCCTGACTTTTCGAGGTCATGAAATAAGAAATTATGTTATTTTGGTATTCTCAGTGTGTTAATCCATAGAATTTTTAGAATTTGTTCGATCATCCCCAAACTTAGCGGCTTCACCTGAAACCTCCTATAGTGACCAATACCCATGGCTTCGTCATGATTGACATCACTTTTTTGGCGTTTCAGCATCATAAAGAAGGAATTCAGGATTGTTTTGGTGTTGTTGTGTGTGTTTGCCCATGGATCTTTTGGAGTTTGTTCGACTGAATCCGTTCTTCCCCAAACTCAGTGGGTCCATCCAAAACCGCCTGGTGACCAATACTCTCATTGTTTCGCCATGACTAAATTCCATCTTTTTTGGCATTTCGGCATCATGACTCATAAAGATGAGATTTAGGGATTTTCTGGAGTTTTTGATGTGTGTTAGTCCATAGATTCTCCGGAATTTGTTCAATCGACTCCATTTCTTTCCTCAAACTTGGTGGTTCCATCGAAAACCACCTGGTGACCAATACTCTCACTGTTTTGCCATGACCAATGCCTCCTTTTTTAGCATTTCGTCGTTAATGAAAGTAGGAATTCAAGATTTTTTGGAGTTTTTGATGTGTGGTAGTCATAGATTTTCCGTAACTTGTTCGATTGACTGTCTTCTGCCCAAACTTAATGGGTCCATTCAAAACCATCGGATGACCAACAATCATTGTTTCACAATGAGCAATCTCATGCCAGCACAGGATGTCGTACCCGTATCCTTATGATAGATTCTTGTTGTGATGGCCTCTGCAAAAAGGAATGGCTGAATATATCCATTGTCAACATTCACTCTCTTGCTAATTATCTCATGTTACAGGATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAGGTACACTACAAATCATAAACCTGAACTCTTTATAAACTCCTACACCTGCTAAATCTGTTCATTATACCTCTACATCACTGCACTAAAACAATACTTAACGATTATAACTCTGCAGAAATCAAGAGAAAAAAGCAGAGGGATTTTGGTATGTGATTAACTATCCTCCGTTTTATCTATGTTTTGAGTAGTCTAAGCTGGCTTCGCGTTAATTGCTAGACGTATTTTGACATTCTTTTAGGGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGAC-GGTAAATCAATCTTCTCTTCGTTTTTGA</genome_strand>
        <mrna_strand>TACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT........................................................................................GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACCTGCTTCAAGTGGTATCATGCAA.......................................................................................ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAANGGAAATCAAG...................................................................................................................AAATCAAGAGAAAAAAGCAGAGGGATTTTG.............................................................................................GGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGGTAAATC-ATCTTCTCTTCGTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725956" ref_strand="+" ref_description="SGN-E725956 [LA08DD08]">
      <seq>ggaaagcgtgtcaaggtttgtgtccaagggtctatgggggaaggtgcacttgcagggatgcctttgcagcttgcaggaagtcgaaagatattagagtacatggattggggtgattatggcgcgttgggaaactttatcaatattggttctataggtggcaaggaggttgaaaaacaagatgacgtgttcattctagtggctccccagaatgctgtcggaaattgcatcatagatgatatgagagctatgactgatgcagccggtaaccgaccgattattctagtcaaccccaaactaaaggatttacctgcttcaagtggtatcatgcaaacaatgggtagagataaaagattggaatatgctgcattgtttgagatatgctatcaattccggctactctactatgcaggaacacaatatcctattatgggggcactcggatggtcgtacccgtatcttatgagttatacaagagagtcgatgaatcacggggaaggagaaatacatatccttggcaacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="44783" stop="48435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44976" g_stop="44990" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45092" g_stop="45230" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="154" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555">
            <donor d_prob="0.315" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45786" g_stop="45865" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="234" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45954" g_stop="46019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="300" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46813" g_stop="46842" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="330" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46930" g_stop="47039" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="439" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47040" i_stop="48050" i_length="1011">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48051" g_stop="48135" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="523" r_length="84" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E725956" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44976" e_stop="44990"/>
          <exon e_start="45092" e_stop="45230"/>
          <exon e_start="45786" e_stop="45865"/>
          <exon e_start="45954" e_stop="46019"/>
          <exon e_start="46813" e_stop="46842"/>
          <exon e_start="46930" e_stop="47039"/>
          <exon e_start="48051" e_stop="48135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGCGTGTCAAGGTATGTGTCACTGATGGTTATTCTTTTCCACTCTTAGTTAATCTAGTATCTTTGAAATAAGGCAAATTATACATATTCATTTCTCCAGATCTCATTTGTAGGTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAGGTATTGTAGAGATTAAAATTGCACTGATGACTTTCACTTCCTATCCAATATCATGTTTTTAGAAGCATACTGCAACTATAAATGGTCTTCTAAGACATAATATACAAATCTATCCGTGTGCGTTCGTGCACAACATTTCTCTTTTTTATGAGATAGGGGCAGAGCCACAGTAGAAGTTTTGTGTTCAATAGAACAACTTTGGCTCAAACGCTGTAGTTGTATTAAGAAATTCAATGCATCCCGAACCCAGTAAGCAATAAGAGGTGTTCTAAACCTAAAATCGTAGATCCGCCTCTGTTGTGAGGGGTTTATTTGAGAATGTAGTTCTAATATAGCTGATAGTAGAAACTTCATAGCTTTATAAATGTTTCTGTTGTGTGGTGACTATTTGTGTATGTTGTGCAAGTATACACATGCTAACATGAATGCTTAACCCTCAATTTTTTCTGAGGTTAGCATTGCGATAAAACACAATATAATCACACTCTTGAATTCGCTTCTTTCACGATTGCTGGTCAACTCCATGTTTACTACAAATTTTAATGTGTTTTTCAGGTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGATGTGATTCACTCTGAACCATTTTCTGTATTTTCCTCATACTGCTCTTATTCAGTTTATTAAATTTTTTCTCTCCTGTTGAATAATGCAGGATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCATAGCTTGACTCAACTTCTCCTCGATGATGAAATGATCATAAATGGCTTGACTTTGATCTATCACATACTAATTGTGCAGGATTTACCTGCTTCAAGTGGTATCATGCAAGTAAGTATCGTAACCATTGAACCATAATGGCCAACAGTAAAGGGAACTTCTTCCTACGTTCTGATTGATTTTCTCTCTGTCTTCAAGACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAGGTTAGATTTGTTTCTATGCTATTTGATTGGTTTGTCATAACATGATCATGAAGAAGAAGAGCAACTTAAAATGGCATGAAAATGCTTTCGTCTTTTTTCGGTTTGGTGAGATAAAATGTGGATTCACGGATCACTCCTTTGTCATGACTGATGTCACTTTTTTTCCCTGACTTTTCGAGGTCATGAAATAAGAAATTATGTTATTTTGGTATTCTCAGTGTGTTAATCCATAGAATTTTTAGAATTTGTTCGATCATCCCCAAACTTAGCGGCTTCACCTGAAACCTCCTATAGTGACCAATACCCATGGCTTCGTCATGATTGACATCACTTTTTTGGCGTTTCAGCATCATAAAGAAGGAATTCAGGATTGTTTTGGTGTTGTTGTGTGTGTTTGCCCATGGATCTTTTGGAGTTTGTTCGACTGAATCCGTTCTTCCCCAAACTCAGTGGGTCCATCCAAAACCGCCTGGTGACCAATACTCTCATTGTTTCGCCATGACTAAATTCCATCTTTTTTGGCATTTCGGCATCATGACTCATAAAGATGAGATTTAGGGATTTTCTGGAGTTTTTGATGTGTGTTAGTCCATAGATTCTCCGGAATTTGTTCAATCGACTCCATTTCTTTCCTCAAACTTGGTGGTTCCATCGAAAACCACCTGGTGACCAATACTCTCACTGTTTTGCCATGACCAATGCCTCCTTTTTTAGCATTTCGTCGTTAATGAAAGTAGGAATTCAAGATTTTTTGGAGTTTTTGATGTGTGGTAGTCATAGATTTTCCGTAACTTGTTCGATTGACTGTCTTCTGCCCAAACTTAATGGGTCCATTCAAAACCATCGGATGACCAACAATCATTGTTTCACAATGAGCAATCTCATGCCAGCACAGGATGTCGTACCCGTATCCTTATGATAGATTCTTGTTGTGATGGCCTCTGCAAAAAGGAATGGCTGAATATATCCATTGTCAACATTCACTCTCTTGCTAATTATCTCATGTTACAGGATG-TCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTT</genome_strand>
        <mrna_strand>GGAAAGCGTGTCAAG.....................................................................................................GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT........................................................................................GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACCTGCTTCAAGTGGTATCATGCAA.......................................................................................ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTC-G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTCGTACCCGTAT-CTTATGAGTTATACAAGAGAGTCGATGAATCA-CGGGGAAGGAGAAATACATATCCTTGGCAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541363" ref_strand="+" ref_description="SGN-E541363 [TUS-62-B22](-)">
      <seq>cccagaatgctgtcggaaattgcatcatagatgatatgagagctatgactgatgcagccggtaaccgaccgattattctagtcaaccccaaactaaaggatttacctgcttcaagtggtatcatgcaaacaatgggtagagataaaagattggaatatgctgcattgtttgagatatgctatcaattccggctactctactatgcaggaacacaatatcctattatgggggcactcaggatgtcgtacccgtatccttatgagttatacaagagagtcgatgaatcaccggggaaggagaaatacatatccttggcaacatttgcaaagaggccaagtattgatgaaatgaacgatgccttcgaaggaaaatcaagaaatcaagagaaaaaagcagagggattttggggcttcttgagtggtatactataagcatcgatggagaatgcacaaacatcatgatatcttctatgcaacatctacatttgatcatccaaaactgacggtaaatcaatcttctcttcgtttttgaatccttcgaaatgcaatcaagttctggatttgaggatctgattaatgtgttcagtatgaatttagtctcctggcacatatcgatcgtaaagtgtatatacatttcctatatatatctggtgattttggtaagtatttcgacaaaaaggatcgtaacataccttattctatgtgtatatatatatttcttgttcattttctctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45534" stop="49055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45834" g_stop="45865" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88">
            <donor d_prob="0.941" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45954" g_stop="46019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="98" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46813" g_stop="46842" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="128" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46930" g_stop="47039" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="238" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47040" i_stop="48050" i_length="1011">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48051" g_stop="48188" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="376" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48189" i_stop="48303" i_length="115">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48304" g_stop="48333" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="406" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48334" i_stop="48426" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48427" g_stop="48760" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="739" r_length="333" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E541363" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45834" e_stop="45865"/>
          <exon e_start="45954" e_stop="46019"/>
          <exon e_start="46813" e_stop="46842"/>
          <exon e_start="46930" e_stop="47039"/>
          <exon e_start="48051" e_stop="48188"/>
          <exon e_start="48304" e_stop="48333"/>
          <exon e_start="48427" e_stop="48760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGAATGCTGTCGGAAATTGCATCATAGATGTGATTCACTCTGAACCATTTTCTGTATTTTCCTCATACTGCTCTTATTCAGTTTATTAAATTTTTTCTCTCCTGTTGAATAATGCAGGATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCATAGCTTGACTCAACTTCTCCTCGATGATGAAATGATCATAAATGGCTTGACTTTGATCTATCACATACTAATTGTGCAGGATTTACCTGCTTCAAGTGGTATCATGCAAGTAAGTATCGTAACCATTGAACCATAATGGCCAACAGTAAAGGGAACTTCTTCCTACGTTCTGATTGATTTTCTCTCTGTCTTCAAGACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAGGTTAGATTTGTTTCTATGCTATTTGATTGGTTTGTCATAACATGATCATGAAGAAGAAGAGCAACTTAAAATGGCATGAAAATGCTTTCGTCTTTTTTCGGTTTGGTGAGATAAAATGTGGATTCACGGATCACTCCTTTGTCATGACTGATGTCACTTTTTTTCCCTGACTTTTCGAGGTCATGAAATAAGAAATTATGTTATTTTGGTATTCTCAGTGTGTTAATCCATAGAATTTTTAGAATTTGTTCGATCATCCCCAAACTTAGCGGCTTCACCTGAAACCTCCTATAGTGACCAATACCCATGGCTTCGTCATGATTGACATCACTTTTTTGGCGTTTCAGCATCATAAAGAAGGAATTCAGGATTGTTTTGGTGTTGTTGTGTGTGTTTGCCCATGGATCTTTTGGAGTTTGTTCGACTGAATCCGTTCTTCCCCAAACTCAGTGGGTCCATCCAAAACCGCCTGGTGACCAATACTCTCATTGTTTCGCCATGACTAAATTCCATCTTTTTTGGCATTTCGGCATCATGACTCATAAAGATGAGATTTAGGGATTTTCTGGAGTTTTTGATGTGTGTTAGTCCATAGATTCTCCGGAATTTGTTCAATCGACTCCATTTCTTTCCTCAAACTTGGTGGTTCCATCGAAAACCACCTGGTGACCAATACTCTCACTGTTTTGCCATGACCAATGCCTCCTTTTTTAGCATTTCGTCGTTAATGAAAGTAGGAATTCAAGATTTTTTGGAGTTTTTGATGTGTGGTAGTCATAGATTTTCCGTAACTTGTTCGATTGACTGTCTTCTGCCCAAACTTAATGGGTCCATTCAAAACCATCGGATGACCAACAATCATTGTTTCACAATGAGCAATCTCATGCCAGCACAGGATGTCGTACCCGTATCCTTATGATAGATTCTTGTTGTGATGGCCTCTGCAAAAAGGAATGGCTGAATATATCCATTGTCAACATTCACTCTCTTGCTAATTATCTCATGTTACAGGATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAGGTACACTACAAATCATAAACCTGAACTCTTTATAAACTCCTACACCTGCTAAATCTGTTCATTATACCTCTACATCACTGCACTAAAACAATACTTAACGATTATAACTCTGCAGAAATCAAGAGAAAAAAGCAGAGGGATTTTGGTATGTGATTAACTATCCTCCGTTTTATCTATGTTTTGAGTAGTCTAAGCTGGCTTCGCGTTAATTGCTAGACGTATTTTGACATTCTTTTAGGGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGTAAATCAATCTTCTCTTCGTTTTTGAATCCTTCGAAATGCAATCAAGTTCTGGATTTGAGGATCTGATTAATGTGTTCAGTATGAATTTAGTCTCCTGGCACATATCGATCGTAAAGTGTATATACATTTCCTATATATATCTGGTGATTTTGGTAAGTATTTCGACAAAAAGGATCGTAACATACCTTATTCTATGTGTATATATATATTTCTTGTTCATTTTTCTCTATTATG</genome_strand>
        <mrna_strand>CCCAGAATGCTGTCGGAAATTGCATCATAGAT........................................................................................GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTACCTGCTTCAAGTGGTATCATGCAA.......................................................................................ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAG...................................................................................................................AAATCAAGAGAAAAAAGCAGAGGGATTTTG.............................................................................................GGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGTAAATCAATCTTCTCTTCGTTTTTGAATCCTTCGAAATGCAATCAAGTTCTGGATTTGAGGATCTGATTAATGTGTTCAGTATGAATTTAGTCTCCTGGCACATATCGATCGTAAAGTGTATATACATTTCCTATATATATCTGGTGATTTTGGTAAGTATTTCGACAAAAAGGATCGTAACATACCTTATTCTATGTGTATATATATATTTCTTGTTCA-TTTTCTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698485" ref_strand="+" ref_description="SGN-E698485 [FA06CA09]">
      <seq>cggttaaccgaccgattattctagtcaaccccaaactaaaggtttggatcttaatacctcgttaatgaatgtgacttcctttttaactaaaaaacagctcatggcttaccatgaatctcaatcgcagcagcaaaagttgtttgaatgataaattagtctcacgtcccttccaatacttaatatcacctaccaaagtgaagcttgtggttgatgcatatacaacaatgctcattttaaatttctttttgtagcttatcgtaaaatacattttgattctggcggtgtccaagaacttaaatgcaacgtctcatacccaagtccatctgtccatgtaacctagagagtactgtttgacatgtagatatgcaaatgagacgaattcattaatctactgaaagtgtttattctagaaattttttaaaatttgaaaactgtgcttaagccttctaatctggataagggtgttttaccatctatgttactctgacttttcataaatgtcagcgggtgcatgtcgaattctccaaaagtagtgtatttttggagtatccgtgtgagtgcggcatcgaaagtagagagtcacacaacttactttaccattatacactaaaatattgattacgaactcaaaccatccatgtattatccatttattcgtcttgcatttatactgatttttctctcagagaaaacaatattttttagttgcactagaaaacccgttaaataaattttgcttacacttccggtgttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="45680" stop="47034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45979" g_stop="46734" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E698485" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45979" e_stop="46734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCAT</genome_strand>
        <mrna_strand>CGGTTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277728" ref_strand="-" ref_description="SGN-E277728 [cLEL-5-G10](-)">
      <seq>agaattcggcacgaggttatacaagagagtcgatgaattaccggggaaggagaaatacatatggtgggcaacatttgcaaagaggccacgcattgatgaaatgaacgatgccttcgaaggaaaatcaagaaatcaagagaaaaaagcagagggattttggggcttcttgagtggtatactataagcatcgatggagaatgcacaaacatcatgatatcttctatgcaacatatacatttgatcatccaaaactgacggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="47771" stop="48828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48076" g_stop="48188" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="129" r_length="113" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48189" i_stop="48303" i_length="115">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48304" g_stop="48333" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="159" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48334" i_stop="48426" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48427" g_stop="48524" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E277728" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277728" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48076" e_stop="48188"/>
          <exon e_start="48304" e_stop="48333"/>
          <exon e_start="48427" e_stop="48524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAGGTACACTACAAATCATAAACCTGAACTCTTTATAAACTCCTACACCTGCTAAATCTGTTCATTATACCTCTACATCACTGCACTAAAACAATACTTAACGATTATAACTCTGCAGAAATCAAGAGAAAAAAGCAGAGGGATTTTGGTATGTGATTAACTATCCTCCGTTTTATCTATGTTTTGAGTAGTCTAAGCTGGCTTCGCGTTAATTGCTAGACGTATTTTGACATTCTTTTAGGGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACG</genome_strand>
        <mrna_strand>TTATACAAGAGAGTCGATGAATTACCGGGGAAGGAGAAATACATATGGTGGGCAACATTTGCAAAGAGGCCACGCATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAG...................................................................................................................AAATCAAGAGAAAAAAGCAGAGGGATTTTG.............................................................................................GGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATATACATTTGATCATCCAAAACTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333834" ref_strand="-" ref_description="SGN-E333834 [cTOD-22-P24]">
      <seq>acgcgaactgggactttgctaggatccatggaattgatgggggatgggcagcaatcatatggatctacacaatcattacatatctccctcttgatgttcttaaattcattagtcgttacgcgttgagtggtgatgcctgggattcaatgatccagaataagaccgccttcacaacaaagaaggactatggaaaaggcgaaagagaagcacaatgggccgtggctcaacgtacacttcatggtctccagactgcagaaagcgatggcttgttccacgacaagaactacagggaattgaacgagattgctgaacaagctaaacgtcgtgctgaagttgccaaatatacacacgagtaattactcgacattttcaaggaccatgttgctgagcttgaggaattttacactctaaaaggaacatgctgaaatgatctaataataaagcaatattgtctaaagattatgcaatgatcacatttttggtgaagggcatttttgcagctaatttttgttttcttcaaaaaacaacaacaagtgtatgtacatatgatgttatcaatgttggatgagttcctaaattggtgaaccacaaaggctgcatattaaaaaaaaagtgagtactagtagctatatacataaacaatagctataatattatcatttatgtttttttttctgtaaatatttatttattattaattcatatatttagttttcctaaaatacgtccaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="57774" stop="56344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57474" g_stop="57314" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57313" i_stop="57220" i_length="94">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57219" g_stop="56644" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="737" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E333834" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333834" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57474" e_stop="57314"/>
          <exon e_start="57219" e_stop="56644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGAACTGGGACTTTGCTAGGATCCATGGAATTGGATGGGGATGGGCAGCAATCATATGGATCTACACAATCATTACATATCTCCCTCTTGATGTTCTTAAATTCATTAGTCGTTACGCGTTGAGTGGTGATGCCTGGGATTCAATGATCCAGAATAAGGTAAAAGAAAAAAAAACAAACAGAGCTATTGATCACATTTCGTAATCTTAATACTGTGTTTGACAAGTTCAATTCTCTTCGTCTTTGATATTAGACCGCCTTCACAACAAAGAAGGACTATGGAAAAGGCGAAAGAGAAGCACAATGGGCCGTGGCTCAACGTACACTTCATGGTCTCCAGACTGCAGAAAGCGATGGCTTGTTCCACGACAAGAACTACAGGGAATTGAACGAGATTGCTGAACAAGCTAAACGTCGTGCTGAAGTTGCCAAATATACACACGAGTAATTACTCGACATTTTCAAGGACCATGTTGCTGAGCTTGAGGAATTTTACACTCTAAAAGGAACATGCTGAAATGATCTAATAATAAAGCAATATTGTCTAAAGATTATGCAATGATCACATTTTTGGTGAAGGGCATTTTTGCAGCTAATTTTTGTTTTCTTCAAAAAACAACAACAAGTGTATGTACATATGATGTTATCAATGTTGGATGAGTTCCTAAATTGGTGAACCACAAAGGCTGCATATTAAAAAAAAAGTGAGTACTAGTAGCTATATACATAAACAATAGCTATAATATTATCATTTATGTTTTTTTTTCTGTAAATATTTATTTATTATTAATTCATATATTTAGTTTTCCTAAAATACGTCCAAAAGGAA</genome_strand>
        <mrna_strand>ACGCGAACTGGGACTTTGCTAGGATCCATGGAATTGATGGGGGATGGGCAGCAATCATATGGATCTACACAATCATTACATATCTCCCTCTTGATGTTCTTAAATTCATTAGTCGTTACGCGTTGAGTGGTGATGCCTGGGATTCAATGATCCAGAATAAG..............................................................................................ACCGCCTTCACAACAAAGAAGGACTATGGAAAAGGCGAAAGAGAAGCACAATGGGCCGTGGCTCAACGTACACTTCATGGTCTCCAGACTGCAGAAAGCGATGGCTTGTTCCACGACAAGAACTACAGGGAATTGAACGAGATTGCTGAACAAGCTAAACGTCGTGCTGAAGTTGCCAAATATACACACGAGTAATTACTCGACATTTTCAAGGACCATGTTGCTGAGCTTGAGGAATTTTACACTCTAAAAGGAACATGCTGAAATGATCTAATAATAAAGCAATATTGTCTAAAGATTATGCAATGATCACATTTTTGGTGAAGGGCATTTTTGCAGCTAATTTTTGTTTTCTTCAAAAAACAACAACAAGTGTATGTACATATGATGTTATCAATGTTGGATGAGTTCCTAAATTGGTGAACCACAAAGGCTGCATATTAAAAAAAAAGTGAGTACTAGTAGCTATATACATAAACAATAGCTATAATATTATCATTTATGTTTTTTTTTCTGTAAATATTTATTTATTATTAATTCATATATTTAGTTTTCCTAAAATACGTCCAAAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333936" ref_strand="+" ref_description="SGN-E333936 [cTOD-24-F9]">
      <seq>ctcatcattgccatcctcaacgatggaaccatcatgaccatctctaaggacagggtcaagccatctcctttgcccgactcatggaagctcaacgagatctttgccactgggattgtcctcggaacctatcaagctctcatgactgttctgttcttctatcttgcagcctctactgatttctttacagagaagttcggtgttagatcaatcagggagaacgaacacggtcttacagctgctgtataccttcaagtgagtattatcagtcaggctctcatctttgtgacaagatcaagaagctggtcatttgttgaacgccccggtgtttttcttgtggttgcgttctttctagcccaattcgtggctacacttatcaccgtctacgcgaactgggactttgctaggatccatggaattggatggggatgggcagcaatcatatggatctacacaatcattacatatctccctcttgatgttcttaaattcattagtcgttacgcgttgagtggtgatgcctgggattcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58515" stop="57024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58215" g_stop="58030" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58029" i_stop="57785" i_length="245">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57784" g_stop="57611" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="360" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57610" i_stop="57497" i_length="114">
            <donor d_prob="0.270" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57496" g_stop="57324" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="533" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E333936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58215" e_stop="58030"/>
          <exon e_start="57784" e_stop="57611"/>
          <exon e_start="57496" e_stop="57324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCATTGCCATCCTCAACGATGGAACCATCATGACCATCTCTAAGGACAGGGTCAAGCCATCTCCTTTGCCCGACTCATGGAAGCTCAACGAGATCTTTGCCACTGGGATTGTCCTCGGAACCTATCAAGCTCTCATGACTGTTCTGTTCTTCTATCTTGCAGCCTCTACTGATTTCTTTACAGTAAGTTCTTTCCTTTGTAGTCTTCCCGAACAAACACTTACCATCATGCGGAAAACTATAACTGATAGCAAGGGTGCAACTTTATTTCTTAACTAATTTCATCAACCAAATGCCCTCGACCATATGACTACAACCCGAGCCATCCAGGCCTATCAACCATAGGCAGGATACTGGTGTTACCGCCACAACAAAAACAAAAAGTACTATTGGAACATGATAAACAAATTTATCTTGTGTATTTGCAGGAGAAGTTCGGTGTTAGATCAATCAGGGAGAACGAACACGGTCTTACAGCTGCTGTATACCTTCAAGTGAGTATTATCAGTCAGGCTCTCATCTTTGTGACAAGATCAAGAAGCTGGTCATTTGTTGAACGCCCCGGTGTTTTTCTTGTGGTTGCGTTCTTTCTAGCCCAATTCGTAAGTCCTTAGAACAATCGAACCTCAACGAACATTCAAAATCTTCACAACTCTGTATATACATATATCCTTACTAATAATCAAGATCCTGTTTTTCTTTTTTTTCTAACTCAGGTGGCTACACTTATCACCGTCTACGCGAACTGGGACTTTGCTAGGATCCATGGAATTGGATGGGGATGGGCAGCAATCATATGGATCTACACAATCATTACATATCTCCCTCTTGATGTTCTTAAATTCATTAGTCGTTACGCGTTGAGTGGTGATGCCTGGGATTCAATGAT</genome_strand>
        <mrna_strand>CTCATCATTGCCATCCTCAACGATGGAACCATCATGACCATCTCTAAGGACAGGGTCAAGCCATCTCCTTTGCCCGACTCATGGAAGCTCAACGAGATCTTTGCCACTGGGATTGTCCTCGGAACCTATCAAGCTCTCATGACTGTTCTGTTCTTCTATCTTGCAGCCTCTACTGATTTCTTTACA.....................................................................................................................................................................................................................................................GAGAAGTTCGGTGTTAGATCAATCAGGGAGAACGAACACGGTCTTACAGCTGCTGTATACCTTCAAGTGAGTATTATCAGTCAGGCTCTCATCTTTGTGACAAGATCAAGAAGCTGGTCATTTGTTGAACGCCCCGGTGTTTTTCTTGTGGTTGCGTTCTTTCTAGCCCAATTC..................................................................................................................GTGGCTACACTTATCACCGTCTACGCGAACTGGGACTTTGCTAGGATCCATGGAATTGGATGGGGATGGGCAGCAATCATATGGATCTACACAATCATTACATATCTCCCTCTTGATGTTCTTAAATTCATTAGTCGTTACGCGTTGAGTGGTGATGCCTGGGATTCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332450" ref_strand="+" ref_description="SGN-E332450 [cTOD-17-H19]">
      <seq>gaaagctcatgaaatcatcgacaactttgctaaccgcggtcttcgttctttgggtgttgcaagacagactgtgccagagaaagataaggaaagtgctggttcaccttgggaattcgtcgggcttttacctctctttgatccaccaaggcacgacagtgcagagacaattcgcaaagctctcgagcttggtgttaatgttaagatgatcactggtgaccagcttgctatcggtaaggaaactggtcgtaggctcggtatgggaaccaacatgtatccatcttcagctcttcttggtgatcacaaggatgagtccattgctcaaattcctgttgaggagcttattgagcaggctgatggctttgctggagtcttcccagaacacaagtacgagatcgtgaagaagctgcaagaaagaaagcacatttgtggtatgactggagatggtgtgaatgatgcaccagcactgaagaaggcagacattggtattgcagttgctgattcaacagatgcagctcgtggtgcatctgatatcgttttgacccaaccaggtcttggtgtcattattagtgccgttttgacaagcagagccattttccagaggatgaagaactatactatctatgcagtctcaatcacaatccgtgtcgtgatgggattcatgctcattgcactcatctgggaattcgacttncctcccttcatggtcctcatcattgccatccctcacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="59575" stop="57891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59275" g_stop="59209" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59208" i_stop="59134" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59133" g_stop="58824" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="377" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58823" i_stop="58545" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.739" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58544" g_stop="58191" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="731" r_length="354" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E332450" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59275" e_stop="59209"/>
          <exon e_start="59133" e_stop="58824"/>
          <exon e_start="58544" e_stop="58191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTCATGAAATCATCGACAACTTTGCTAACCGCGGTCTTCGTTCTTTGGGTGTTGCAAGACAGGTAAAGCAAATATAATATCTGATAACTTTGTTTGAGTTAAGTGCAGTGCAATGTATCATGATAATTTTTGTGCAGACTGTGCCAGAGAAAGATAAGGAAAGTGCTGGTTCACCTTGGGAATTCGTCGGGCTTTTACCTCTCTTTGATCCACCAAGGCACGACAGTGCAGAGACAATTCGCAAAGCTCTCGAGCTTGGTGTTAATGTTAAGATGATCACTGGTGACCAGCTTGCTATCGGTAAGGAAACTGGTCGTAGGCTCGGTATGGGAACCAACATGTATCCATCTTCAGCTCTTCTTGGTGATCACAAGGATGAGTCCATTGCTCAAATTCCTGTTGAGGAGCTTATTGAGCAGGCTGATGGCTTTGCTGGAGTCTTCCCAGGTAAATATCTAGCAAATAAAATACAGTCAAATAACGATGCCACTCAATACTTTTTTTAGCTGCTATATCGAAATGATGTTATAGAGAACATATAATATAACACAACACGAAAAAACAGTTCCAGAAGTAAAAATATTGACAGTGAACTGAAATGTCGTTATATTATGTGACAGTAATACCTTTTGTTTTTATTTTATGTGAAACGGAAATGTCATGACATGTTTAAGATCAAAAGTTTCTTTCAAACTTACACAAGGATATATTTTGATCCTTTTGAAGAACACAAGTACGAGATCGTGAAGAAGCTGCAAGAAAGAAAGCACATTTGTGGTATGACTGGAGATGGTGTGAATGATGCACCAGCACTGAAGAAGGCAGACATTGGTATTGCAGTTGCTGATTCAACAGATGCAGCTCGTGGTGCATCTGATATCGTTTTGACCCAACCAGGTCTTGGTGTCATTATTAGTGCCGTTTTGACAAGCAGAGCCATTTTCCAGAGGATGAAGAACTATACTATCTATGCAGTCTCAATCACAATCCGTGTCGTGATGGGATTCATGCTCATTGCACTCATCTGGGAATTCGACTTCCCTCCCTTCATGGTCCTCATCATTGCCATCCTCAACGATG</genome_strand>
        <mrna_strand>GAAAGCTCATGAAATCATCGACAACTTTGCTAACCGCGGTCTTCGTTCTTTGGGTGTTGCAAGACAG...........................................................................ACTGTGCCAGAGAAAGATAAGGAAAGTGCTGGTTCACCTTGGGAATTCGTCGGGCTTTTACCTCTCTTTGATCCACCAAGGCACGACAGTGCAGAGACAATTCGCAAAGCTCTCGAGCTTGGTGTTAATGTTAAGATGATCACTGGTGACCAGCTTGCTATCGGTAAGGAAACTGGTCGTAGGCTCGGTATGGGAACCAACATGTATCCATCTTCAGCTCTTCTTGGTGATCACAAGGATGAGTCCATTGCTCAAATTCCTGTTGAGGAGCTTATTGAGCAGGCTGATGGCTTTGCTGGAGTCTTCCCAG.......................................................................................................................................................................................................................................................................................AACACAAGTACGAGATCGTGAAGAAGCTGCAAGAAAGAAAGCACATTTGTGGTATGACTGGAGATGGTGTGAATGATGCACCAGCACTGAAGAAGGCAGACATTGGTATTGCAGTTGCTGATTCAACAGATGCAGCTCGTGGTGCATCTGATATCGTTTTGACCCAACCAGGTCTTGGTGTCATTATTAGTGCCGTTTTGACAAGCAGAGCCATTTTCCAGAGGATGAAGAACTATACTATCTATGCAGTCTCAATCACAATCCGTGTCGTGATGGGATTCATGCTCATTGCACTCATCTGGGAATTCGACTTNCCTCCCTTCATGGTCCTCATCATTGCCATCCCTCACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333066" ref_strand="+" ref_description="SGN-E333066 [cTOD-19-A16]">
      <seq>aattgacaacttgttggtgttgcttattggaggtatcccaattgccatgccaacagtcttgtctgttaccatggctattggatctcatcggttgtcccaacaaggcgctatcactaagaggatgactgctatcgaggaaatggctggtatggatgtcctctgcagtgacaagaccggtaccctcacgcttaacaagcttactgttgaccaaaccttgattgaggtattcactaagaacgcagatgcagacaccgttatgttacttgcagctagagcttcgagggttgaaaaccaggatgctattgatacttgtatcgttaatatgttgggtgatgctaaactggcaagagaaggcatccaagaggttcatttctttccattcaaccccgttgataagcgcactgcaatcacctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="60339" stop="59146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60039" g_stop="59817" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59816" i_stop="59734" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59733" g_stop="59614" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="343" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59613" i_stop="59520" i_length="94">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59519" g_stop="59446" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="417" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E333066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60039" e_stop="59817"/>
          <exon e_start="59733" e_stop="59614"/>
          <exon e_start="59519" e_stop="59446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGACAACTTGTTGGTGTTGCTTATTGGAGGTATCCCAATTGCCATGCCAACAGTCTTGTCTGTTACCATGGCTATTGGATCTCATCGGTTGTCCCAACAAGGCGCTATCACTAAGAGGATGACTGCTATCGAGGAAATGGCTGGTATGGATGTCCTCTGCAGTGACAAGACCGGTACCCTCACGCTTAACAAGCTTACTGTTGACCAAACCTTGATTGAGGTTCGTAATCAAGACAAAAAATATACCTTTTTTCTTTATGAAAATTCCTATCAGAACATAACGACTTATGTTTGTGGTTGTAGGTATTCACTAAGAACGCAGATGCAGACACCGTTATGTTACTTGCAGCTAGAGCTTCGAGGGTTGAAAACCAGGATGCTATTGATACTTGTATCGTTAATATGTTGGGTGATGCTAAACTGGTAATGTAAACTAAGAGTTAACTATGAACTTTGTCGCTCGTTAATCTGTCACCAAATAGGTTGTAGATGAGCTTAAGTACTTGTGATATTGCAGGCAAGAGAAGGCATCCAAGAGGTTCATTTCTTTCCATTCAACCCCGTTGATAAGCGCACTGCAATCACCTATAT</genome_strand>
        <mrna_strand>AATTGACAACTTGTTGGTGTTGCTTATTGGAGGTATCCCAATTGCCATGCCAACAGTCTTGTCTGTTACCATGGCTATTGGATCTCATCGGTTGTCCCAACAAGGCGCTATCACTAAGAGGATGACTGCTATCGAGGAAATGGCTGGTATGGATGTCCTCTGCAGTGACAAGACCGGTACCCTCACGCTTAACAAGCTTACTGTTGACCAAACCTTGATTGAG...................................................................................GTATTCACTAAGAACGCAGATGCAGACACCGTTATGTTACTTGCAGCTAGAGCTTCGAGGGTTGAAAACCAGGATGCTATTGATACTTGTATCGTTAATATGTTGGGTGATGCTAAACTG..............................................................................................GCAAGAGAAGGCATCCAAGAGGTTCATTTCTTTCCATTCAACCCCGTTGATAAGCGCACTGCAATCACCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308496" ref_strand="+" ref_description="SGN-E308496 [cLEY-21-O24]">
      <seq>agagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaatttgagctgttaaatgttggttaatagtagtattttgttattgcattttcatgcattgagttatctgtttgtgatttatatattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70080" stop="68867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69780" g_stop="69744" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="141" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69156" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="451" r_length="310" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E308496" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69780" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAATGACCGATTAT</genome_strand>
        <mrna_strand>AGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341961" ref_strand="+" ref_description="SGN-E341961 [cTOF-10-E11]">
      <seq>tcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaatttgagctgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70088" stop="68939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69788" g_stop="69744" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="149" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69232" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="383" r_length="234" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E341961" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69788" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGT</genome_strand>
        <mrna_strand>TCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343218" ref_strand="+" ref_description="SGN-E343218 [cTOF-17-J10]">
      <seq>tttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70094" stop="68953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69794" g_stop="69744" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="155" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69245" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="376" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E343218" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69794" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCT</genome_strand>
        <mrna_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344429" ref_strand="+" ref_description="SGN-E344429 [cTOF-14-A24]">
      <seq>tttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70094" stop="68953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69794" g_stop="69744" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="155" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69245" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="376" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E344429" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69794" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCT</genome_strand>
        <mrna_strand>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347606" ref_strand="+" ref_description="SGN-E347606 [cTOF-26-D23]">
      <seq>atcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70089" stop="68953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69789" g_stop="69744" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="150" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69245" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="371" r_length="221" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E347606" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69789" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCT</genome_strand>
        <mrna_strand>ATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620928" ref_strand="-" ref_description="SGN-E620928 [71635]">
      <seq>ttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttctcataagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtagaaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcagtaggagctcatttgctgaggaaacagattgtgtttttaatttcggaagagatttatatattaatgactgattatgaagttctgtttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70093" stop="68960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69793" g_stop="69744" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69252" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="365" r_length="211" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E620928" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620928" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69793" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAAT</genome_strand>
        <mrna_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCTCATAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGAACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAGTAGGAGCTCATTTGCTGAGGAAACAGATTGTGTTTTTAATTTCGGAAGAGATTTATATATTAATGACTGATTATGAA---GTTCTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297139" ref_strand="+" ref_description="SGN-E297139 [cLET-29-G9]">
      <seq>agcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaagtcgttttgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70086" stop="68953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69786" g_stop="69744" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="147" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69254" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="359" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="370"/>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E297139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69786" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA</genome_strand>
        <mrna_strand>AGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609949" ref_strand="-" ref_description="SGN-E609949 [57099]">
      <seq>caaaaatgccttctcacaagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggataaacttctcggattatgttttattttctggctcaataggagcttattcagtgaggaaacagattgtgtttttaattttggaagagatttatatattaatgactgattatgaagttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="69959" stop="68961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69751" g_stop="69744" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="112" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69260" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="318" r_length="206" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E609949" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609949" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69751" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTT</genome_strand>
        <mrna_strand>CAAAAATG.....................................................................................CCTTCTCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGATAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAATAGGAGCTTATTCAGTGAGGAAACAGATTGTGTTTTTAATTTTGGAAGAGATTTATATATTAATGACTGATTATGAAGTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609444" ref_strand="-" ref_description="SGN-E609444 [25453]">
      <seq>ttcaatcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttctcataagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtagaaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcagtaggagctcatttgctgaggaaacagattgtgtttttaatttcggaagagatttatatattaatgactgattatgaagttctgtttaattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70093" stop="68953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69793" g_stop="69744" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69267" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="353" r_length="199" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="367" polyA_stop="386"/>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E609444" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609444" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69793" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAA</genome_strand>
        <mrna_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCTCATAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGAACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAGTAGGAGCTCATTTGCTGAGGAAACAGATTGTGTTTTTAATTTCGGAAGAGATTTATATATTAATGACTGATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339402" ref_strand="+" ref_description="SGN-E339402 [cTOF-4-E10]">
      <seq>caacagcaaaaatgccttcgcacaagtcattcatgattaagaagaagctagcgaagaagcagaggcagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtagacactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagtttttaatggaaaaacttctcggattatgttttattttcgagttcaataggagctcatttgctgaggaaacagactgtgcttttaattttggaagagatttatatattaatgaccgattatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="69959" stop="68967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69757" g_stop="69744" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="118" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69267" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="317" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E339402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69757" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAA</genome_strand>
        <mrna_strand>CAACAGCAAAAATG.....................................................................................CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612133" ref_strand="-" ref_description="SGN-E612133 [61892]">
      <seq>agtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcaataggagcttattcagtgagccaacagattgtgttttttattttggaagagatttatatattaatgactgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="69948" stop="68967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69648" g_stop="69555" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69465" g_stop="69272" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="288" r_length="194" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="289" polyA_stop="305"/>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E612133" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612133" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69648" e_stop="69555"/>
          <exon e_start="69465" e_stop="69272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATT</genome_strand>
        <mrna_strand>AGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAATAGGAGCTTATTCAGTGAGCCAACAGATTGTGTTTTTTATTTTGGAAGAGATTTATATATTAATGACTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595103" ref_strand="-" ref_description="SGN-E595103 [38369]">
      <seq>ttcattcagcatcagagcttaagcgccgggaatctccaacagcaaaaatgccttctcacaagtcattcatgattaagaagaagctagcgaagaagcagagacagaacaggccaattccttactggatccgtatgaggactgataacacaatcaggtacaatgctaagcgtaggcactggcgtaggaccaagctaggattttaaggtggaagaatcgtgttttatttaagttttttatggaaaaacttctcggattatgttttattttctggctcaataggagcttattcagtgaggaaacagattgtgttttttattttggaagagatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70093" stop="68987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69793" g_stop="69744" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69658" g_stop="69555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="154" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69465" g_stop="69287" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="333" r_length="179" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E595103" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595103" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69793" e_stop="69744"/>
          <exon e_start="69658" e_stop="69555"/>
          <exon e_start="69465" e_stop="69287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATGGTGAGTTTCTATTCGAAATATTCAAAATTGATACTTATTGTAAGCTTGTGTATGCTAAACTGATTTCCGTGCAATTTTTGTTTAGCCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAGGTATTCATATTCACTAATTGCTAAAAAAAATTGAGTATTGTGATATTAATTTGGACTTTTACTAATGAAGTTTCGTTTTTGTATTTTAGGTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATA</genome_strand>
        <mrna_strand>TTCATTCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG.....................................................................................CCTTCTCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGACAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG.........................................................................................GTACAATGCTAAGCGTAGGCACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTTATGGAAAAACTTCTCGGATTATGTTTTATTTTCTGGCTCAATAGGAGCTTATTCAGTGAGGAAACAGATTGTGTTTTTTATTTTGGAAGAGATTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436489" ref_strand="+" ref_description="SGN-E436489 [STM-63-G7]">
      <seq>tggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactgatagcataagtttaacccattgtaatttcgttttgtgcaagggtatgcaacaaaacgccaacgctaatcgactcttcaatcttgtctcttttgggtgtgatttgtgaaaattttacttcagtttattttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71134" stop="70110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70834" g_stop="70398" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E436489" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70834" e_stop="70398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACT-TCCGATCTAGTTTCTTTTGGGTGTAATTTGTGAAAATTTTACTTCAGTTAATTTTCTATCATGATGTACA</genome_strand>
        <mrna_strand>TGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATAGCATAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAACGCCAACGCTAATCGACTCTTCAATCTTGTCTCTTTTGGGTGTGATTTGTGAAAATTTTACTTCAGTTTATTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459118" ref_strand="+" ref_description="SGN-E459118 [cPRO-33-K8]">
      <seq>tggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactgatagcataagtttaacccattgtaatttcgttttgtgcaagggtatgcaacaaaacgccaacgctaatcgactcttcaatcttgtctcttttgggtgtgatttgtgaaaattttacttcagtttattttctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71134" stop="70110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70834" g_stop="70398" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E459118" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70834" e_stop="70398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACT-TCCGATCTAGTTTCTTTTGGGTGTAATTTGTGAAAATTTTACTTCAGTTAATTTTCTATCATGATGTACA</genome_strand>
        <mrna_strand>TGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATAGCATAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAACGCCAACGCTAATCGACTCTTCAATCTTGTCTCTTTTGGGTGTGATTTGTGAAAATTTTACTTCAGTTTATTTTCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436490" ref_strand="+" ref_description="SGN-E436490 [STM-63-G7]">
      <seq>tttttttttttttagaaaataaactgaagtaaaattttcacaaatcacacccaaaagagacaagattgaagagtcgattagcgttggcgttttgttgcatacccttgcacaaaacgaaattacaatgggttaaacttatgctatcagtatgtaatacagcaagttccaaggcaatatagtgagtaagttacataggctatactcaaatgcctaattttgacacaatcatgctagtacgaaactccagtagtgaacttcaccgaagggtgaaagaggtatccgactctcatctcttcttgaaaccatattttttacgttcataaaacagatcagtcttggcactaccaagattgactatctttggacagccatccctatctttctcctgctgagtacattccttgcaatagtaagcatcagaaataccaacaccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="70110" stop="71134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70398" g_stop="70834" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E436490" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70398" e_stop="70834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACATCATGATAGAAAATTAACTGAAGTAAAATTTTCACAAATTACACCCAAAAGAAACTAGATCGGA-AGTCGATTAGCGTTGGCATTTTGTTGCATACCCTTGCACAAAACGAAATTACAATGGGTTAAACTTGTGATATCAGTATGTAATACAGCAAGTTGCAAGGCAATATAGTGAGTAAG-TACATAGGCTATACTCAAATGCCTAATTTTGACACAATTATGCTAGTACAAAATTCCAGTAGTGAACTTCACCGAAGGGTGAAAGAGGTATCCGACCCTCTCATCTCTTCTTGAAACCATATTTTTTACGTTCATAAAACAGATCGGTCTTGGCACTACCAAGATTGACTATCTTTGGACAGCCATCCCTATCTTTCTCCTGCTGAGTACACTCCTTGCAATAGTAAGCATCAGAGATACCAACACCACCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTAGAAAATAAACTGAAGTAAAATTTTCACAAATCACACCCAAAAGAGACAAGATTGAAGAGTCGATTAGCGTTGGCGTTTTGTTGCATACCCTTGCACAAAACGAAATTACAATGGGTTAAACTTATGCTATCAGTATGTAATACAGCAAGTTCCAAGGCAATATAGTGAGTAAGTTACATAGGCTATACTCAAATGCCTAATTTTGACACAATCATGCTAGTACGAAACTCCAGTAGTGAACTTCACCGAAGGGTGAAAGAGGTATCCGA--CTCTCATCTCTTCTTGAAACCATATTTTTTACGTTCATAAAACAGATCAGTCTTGGCACTACCAAGATTGACTATCTTTGGACAGCCATCCCTATCTTTCTCCTGCTGAGTACATTCCTTGCAATAGTAAGCATCAGAAATACCAACACCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604815" ref_strand="+" ref_description="SGN-E604815 [74954]">
      <seq>ttntctctgcagctaaaccccctacgggctttcccgggtcccagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggcaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgcggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgcaaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtctgatacctctttcacccttcggtgaagttcactactggaattttgtactagcatgattgtgtcaaagttaggcatttgagtataggctatgtaacttactcactatattgccttggaacttgctgtattacatactgatatcacaggtttaaacccattgtaattctcgttttgtgcaagggtttgcaacaggatgccaacgctaaatcgactttcaatcttgtctcttatgggtgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73864" stop="70140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73533" g_stop="73506" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="65" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73505" i_stop="71040" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70440" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="666" r_length="601" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E604815" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73533" e_stop="73506"/>
          <exon e_start="71039" e_stop="70440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTT-AACCCATTGTAATT-TCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCT-AATCGACTTCCGATCTAGTTTCTTTTGGGTGTAATT</genome_strand>
        <mrna_strand>GTCCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGG-CAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGCGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCAAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCTGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATGATTGTGTCAAAGTTAGGCATTTGAGTATAGGCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATATCACAGGTTTAAACCCATTGTAATTCTCGTTTTGTGCAAGGGTTTGCAACAGGATGCCAACGCTAAATCGACTTTCAATCTTGTCTCTTATGGGTGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348741" ref_strand="+" ref_description="SGN-E348741 [cTOF-29-I7]">
      <seq>tcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcactatattgccttgcaacttgctgtattacatactgatatcacaagtttaacccattgtaatttcgttttgtgcaagggtatgcaacaaaatgccaacgctaatcgacttccgatctagtttcttttgggtgtnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71047" stop="70142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70747" g_stop="70446" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="306" polyA_stop="335"/>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E348741" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70747" e_stop="70446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGT</genome_strand>
        <mrna_strand>TCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571330" ref_strand="+" ref_description="SGN-E571330 [12604]">
      <seq>ctttcggttccagaaacttcgctcatcgattcaggttaagacgtcactgttagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctattggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttggcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgaaagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactgatatcacagcgtttaacccattgtaatttcgttttgtgcaagggtatgcgcaacagcatgccaacgcttaatcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73839" stop="70193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73539" g_stop="73506" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73505" i_stop="71040" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70468" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="610" r_length="576" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E571330" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73539" e_stop="73506"/>
          <exon e_start="71039" e_stop="70468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTT-GCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACA-AGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTAT--GCAACAAAATGCCAACGC-TAATCGACT</genome_strand>
        <mrna_strand>CTTTCGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGTTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATTGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGA-A-AGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATATCACAGCGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCGCAACAGCATGCCAACGCTTAATCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567261" ref_strand="+" ref_description="SGN-E567261 [11358]">
      <seq>ctttcggttccagaaacttcgctcatcgattcaggttaagacgtcactgttagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctattggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttggcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgaaagtcggatacctctttcacccttcggtgaagttcactactggagtttcgtactagcatgattgtgtccaacattaggcatttgagtatagcctatgtaacttactcactatattgcctttggaacttgcttgtattaacatactgatatcacaggtttaacccattgtaatttcgtttttgtgcaagggtatgcgcaacagcatgccaacgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73839" stop="70193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73539" g_stop="73506" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73505" i_stop="71040" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70474" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="607" r_length="573" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E567261" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73539" e_stop="73506"/>
          <exon e_start="71039" e_stop="70474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTT-GCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGT-CAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCC-TTGCAACTTGC-TGTATT-ACATACTGATATCACAAGTTTAACCCATTGTAATTTCG-TTTTGTGCAAGGGTAT--GCAACAAAATGCCAACGCTAA</genome_strand>
        <mrna_strand>CTTTCGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGTTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATTGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGA-A-AGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCCAACATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTTGGAACTTGCTTGTATTAACATACTGATATCACAGGTTTAACCCATTGTAATTTCGTTTTTGTGCAAGGGTATGCGCAACAGCATGCCAACGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561969" ref_strand="+" ref_description="SGN-E561969 [20769]">
      <seq>atgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgcggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgcaaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtctgatacctctttcacccttcggtgaagttcactactggaattttgtactagcatgattgtgtcaaagttaggcatttgagtataggctatgtaacttactcactatattgccttggaacttgctgtattacatactgatatcacaggtttaacccattgtaatttcgttttgtgcaagggtttgcaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71242" stop="70189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70942" g_stop="70488" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E561969" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70942" e_stop="70488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAA</genome_strand>
        <mrna_strand>ATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGCGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCAAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCTGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATGATTGTGTCAAAGTTAGGCATTTGAGTATAGGCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGATATCACAGGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTTTGCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353012" ref_strand="+" ref_description="SGN-E353012 [cTOS-14-K2]">
      <seq>gtcatttctctgcagctaaacccctgcggctttaggttccagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcccgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccggccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatctctgatgcttactattgcaaggagtgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcactatattgccttgcaacttgctgtattacatactgatatcacaangttaacccatttgtatttcgtttttgtgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73868" stop="70201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73568" g_stop="73506" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73505" i_stop="71040" i_length="2466">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70499" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="605" r_length="542" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E353012" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73568" e_stop="73506"/>
          <exon e_start="71039" e_stop="70499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCG-TTTTGTGCAAGG</genome_strand>
        <mrna_strand>GTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAANGTTAACCCATTTGTATTTCGTTTTTGTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609101" ref_strand="+" ref_description="SGN-E609101 [25102]">
      <seq>gctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcattcttgtccgagtctgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagtcggatacctctttcacctcttcggtgaagttcactactggagtttcgtactagcatgattgtgtcaaaattaggcatttgagtatagcctatgtaacttactcactatattgccttggaacttgctgtattacatactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71349" stop="70240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71039" g_stop="70540" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="514" r_length="500" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E609101" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71039" e_stop="70540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACC-CTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGT-ACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGA</genome_strand>
        <mrna_strand>GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCATTCTTGTCCGAGTCTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGA--GTCGGATACCTCTTTCACCTCTTCGGTGAAGTTCACTACTGGAGTTTCGTACTAGCATGATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTAACTTACTCACTATATTGCCTTGGAACTTGCTGTATTACATACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254001" ref_strand="+" ref_description="SGN-E254001 [cLEG-34-I17]">
      <seq>cagaaacttcgctcatcgattcaggttaagacgtcactgctagaaatatggccaagcatcatcccgatttgatcatgtgccggaagcagccaggaatagctatcggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccggccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatctctgatgcttactattgcaaggagtgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagaccgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgagagggtcggatacctctttcacccttcggtgaagttcactactggaattttgtactagcataattgtgtcaaaattaggcatttgagtatagcctatgtacttactcacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73829" stop="70273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73529" g_stop="73506" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73505" i_stop="71040" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70573" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="491" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E254001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73529" e_stop="73506"/>
          <exon e_start="71039" e_stop="70573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTA</genome_strand>
        <mrna_strand>CAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568035" ref_strand="+" ref_description="SGN-E568035 [12254]">
      <seq>ctttcggttccagaaacttcgctcatcgattcaggttaagacgtcactgttagaaatatggccaagcatcatcctgatttgatcatgtgccggaagcagccaggaatagctattggtcgactttgtgagaaatgtgatgggaagtgtgtgatttgtgattcatacgtccgtccttgcacacttgtccgagtttgtgatgaatgcaactatggatcctttcaaggccgttgtgtcatctgtggtggtgttggtatttctgatgcttactattgcaaggaatgtactcagcaggagaaagatagggatggctgtccaaagatagtcaatcttggtagtgccaagactgatctgttttatgaacgtaaaaaatatggtttcaagaagagatgaaagtcggatacctctttcacccttcggtgaagttcactactggagttccgtactagcgtgattgtgtcaaaattagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73839" stop="70305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73539" g_stop="73506" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73505" i_stop="71040" i_length="2466">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71039" g_stop="70605" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="467" r_length="433" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E568035" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73539" e_stop="73506"/>
          <exon e_start="71039" e_stop="70605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGGTTCCAGAAACTTCGCTCATCGATTCAGGTTTGCGTTATATCCTCTTAACATTGTTATTAATTTTTAGTTTAATCATGTTTTTTGTTTGATATTGCGTTTGTTATGTGTTTGAATTTTGCTAATTGTTTAATTTCGTTTTTGTTGAATTTTTGATGTTGTTAATAGTTATTTTGATCGTGTTTTATTTGACATTGAGTAGTAATTTGAACGAATTAGTATCGGTTAAAGTTCTACTGATGTTATTAGCTACTTGAACCGTGTTTTGTTTGGTATTCTGTTTGTTTTGTGTTTGAATTTAGCTAATTATGTAATTACGTTTTTGTTGAATTTTTGCTGTTGTTAATAGCTACTTAAATCATGTTTTGTTTTTATATTGAGGTTGTTTCGGATAGGAATTTGAACGATTAGTATTGGTTAAACTTTACTGTTGTTAGTAGCTACTTTTGTTTGATAATGTGTTTGAATTCAGAAAATCACTGAATTTTTTGTATTGGTAGGATTAGTCTATTTAGTAGTAGGAGATTGTTTTACGAAGGGGGAAATAGTTTTCATTCTTAATATGCTTTGTTATGTTTTTGTGTTGTAAATAAATATTTTTTCTGACTCTTCTTTAGTTTTAGGTTTAGATGTAAGTAATTGAGTTCACAGTATTATACCAATTTGCTTTTGTTGCAGTAGCAGAAATAACTTGATCATGAATTAAGGACATCCCTGTTAACCTCAGTTGTAAAATAGTAAAAGCATTGAAGTTTATATATAGCACTTCAACAAAGAAAGAAAGAAAGATGCTTATTGAGTCATTCACATGACGATCACTGTGTTTGCTAGATGTTGAACTAGAGTGTTTCTTGATAAGTGATAGGAGTAGTAACTTAGTAATGCTTAATGTTTGATTTTTTTTCGTCTTGATAGTTGCACAGTATTGGCTAGTTTGCCCATACCTCGACTATTCCATTGGGAACCAGCCACCTATACACTAGTATAGATATCAGGTAACTCAGCTTACAGAACCTCGATGTATAGGAAGAAATCACCTTTTGTTAGGATCTGAAACCAGTCTTCACTTTATTGAGCAACTTATTTAAGTTCAATGATTGCATACATTTAATAATGATCAAGATCTTCTTAGAAAATATGCAAGCAAAGGGCTCTTATAGCCTGTCCAAGGAAAAAGGAATCGGGCAAGGGGATGTGTTTATAGGTGTTCAAAATTGAGAATATTTAATCAATGAGTCTAGTGCAGTAAGTGTATGGACATCATATCTGTGGACTAGAAGGCAGTAGTTTCATCATTAAAAAGAAAGCGATTCTGAAATTCCGACTGTATGAAATGAGTTGAAGTAGGTTCACAACTCAAAAGCACTCGAAGAACTTGCTTTTCTGCGCCTTTGTGGTATTCTGCTTATATCAGTTTCTGCTTGCAAAATGAGATGTAGGATAGTAAATGTTACCTGTTCCCAAAAAAAAATAAAATGAAATGTAGGATAGTGAAGCTAAGATCTCTGCAAGTTCTTAACTCTGTTTGTTAAGATCGTTCCATAACAAACTATGAAATAATTAGCTGGTTAACCATATCAATTTCTGGTAGTGTTAACATAGATGTCATTGTTACTCTCTCTGTAGAAAATTAGAATCAGAGGTGCATAAAGCTGTTTGTGTTTGCAAAGTGCATAGTGTCACCACTCACCAGCAATTGCATTGCTTTATTGATGAGGATTTCTCTTTGGAAAATCTTTTGTGAGGGTCCAATTCTTTTTCCCCTATTGATCGGTCGAGACAATCTTAAATTTAAGAACCAAAAAGTTGATTGAATATTGCCTACACCTTTTATCTTCCCTGTCACAATTTAAATACAAAAGAAACTCTGTGGAACTGTGGAACTCAATTTTTCCATGGTCCATACCATTGTCCATAATGTTTGACAAATCCTTATAAGGAGAAAAGTACAGGAGCTAAAGGGGTAGGGGATAGAGCGAGTTCATCTCCATCTAGACAGTCCCAAAGCTGATGAATCCAAGTTGTTTTGGAGAACTCTGTAACTGATGCTATTTTCATTCATTTTCCTTATCTGTAGGGCATCACGATTGGTAGCAGGATATGTTGACATTAGGGTGATGATATCTATATTTTTACAGAATTCTGTTCTTTTTGCTTCTTGGCAGACATGAACGGTTTTAGACATTTCTGTAACTGTCTAACTGACGCTATTTCGTTCGTTTTTCTTCTATGTGTTGGGCCTAGCAAATGGTAACATGATATGTTATGATACTAGGGTGATAATATTTGTCTCTTTATGGAACTGGAAAGACGTGATAAAGTTGAACTTACTATTTTATCAATCAGAATAAGTTACTGTATTCTACTTCTTGTCCCATTTATATTTTTTACTATGCTTTCTGCTACAATAAGCATAATCATATAGATCTTAGAAACACATTGTTTTGCCTCGTTTCTGCCGTCTGCTAATTACTCTTCCTTAATTTTCTTTTCCAGGTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGG</genome_strand>
        <mrna_strand>CTTTCGGTTCCAGAAACTTCGCTCATCGATTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGACGTCACTGTTAGAAATATGGCCAAGCATCATCCTGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATTGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGTCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATTTCTGATGCTTACTATTGCAAGGAATGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACTGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGA-A-AGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAGTTCCGTACTAGCGTGATTGTGTCAAAATTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698200" ref_strand="+" ref_description="SGN-E698200 [FA05CC08]">
      <seq>cgctttggtgaaagggaaaactatgataattttccagttggtatgagggttcttgctgttgatgatgacccaatttgtttgaagttgttggatggactgcttaggaaatgccagtatcacgttactacgacgagtcaggcaagatcggcgttgaagatgttgagggaaaacaaagatagatttgacttggtgatcagtgatgtccacatgcctgatatggatggctttaaacttctggagcttgttggtctcgagatggatcttcccgtcataatgttgtcagcaaacagtgatagcaaacttgtaatgaagggaataactcacggtgcttgtgactatttggtgaagcctgtccggcttgaggagctaaagaatatatggcaacatgtaataaggagaaagaaagttgagcctaagaagcaaaacaagtctgatgatcaagacaaggctcaccagggaggaggagaaggcgaaagaggatcacaggtttcaggtaatgcagatcaaaacgggaaggttaacaagaaaaggaaggatgaagaatatgaaagcgatgaaaatggaaatgatgatgaagatcccggaactcagaagaaacctcgtgtagtttgggctatacagcttcacaagaagtttgttacagcagttcatcagttaggcccttgaaaaagctgtgccctaagaggattcttgatctgatgaatgttgaaggacttacaagagaagaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="81197" stop="83850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81492" g_stop="81612" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81613" i_stop="82666" i_length="1054">
            <donor d_prob="0.699" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82667" g_stop="82819" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="274" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82820" i_stop="82990" i_length="171">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82991" g_stop="83383" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="668" r_length="394" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83384" i_stop="83488" i_length="105">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83489" g_stop="83550" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="732" r_length="64" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E698200" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81492" e_stop="81612"/>
          <exon e_start="82667" e_stop="82819"/>
          <exon e_start="82991" e_stop="83383"/>
          <exon e_start="83489" e_stop="83550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACGGTATTTATGTTTTTTTTTTCTGTGTTTTTGCTTAAAGATTTCATTTTTTTGGTTTATCAATTTGGACTAGTTGGTAAAGTTTCTGAATTGATTCAGTTTGATGCTATTTGCAATTTCTGCTGTTTGGGAAGTTGTTTTCTGTTCCATTCTGAAAAAAAATCAGAACTTTGTTCTGATTTAGACTTTTATAAGGAGAAGTTTAGATCTTCAACTCCCAGAAAACAAAGGTTTAGAATTTGTTTTTCATAGTTCCAAGATTTTTCATGTTTCTCAATTGCTGTTAATATTGCTTTTCCTCTTCATGCATGGTTCATGTTCCCTTTAAATTGGATTGTTGCTTTTCAACAATGAAAGTCAACAGCTATATATGCTGTGTAATCTCACAAGTGGGGTCGAGGGTAAGTGGACGCATACCGTACTCCAACCTCGTGGACATAGAGAGGCTGTTTCGGGAAGACCCTGTGGTCTTTTCAACCATGGAAGTCATAAATAAAAAAAAGAATCTTGAAGTTCTTTTAATTTGATTTTGGCCTTTTCAACTTGACTGTGTAGTTGAGCTTAAATGGATAGCTCTCTCCGACTTGTTTGGGATTGAGGCGCAGATGTTGTTGTGTACAGCTTACTATGGAGTATAATCAAGTCGAAATTCTCCATTTTGTACTTTTGTTTTGGATAGTCTGGTTTGAAGCCTAGTTTTCTCTCAGATGTTCATGACAGCTTTGGTGGGCGAGTGTGTATGTGCACGCATACGTATGTTAAACTTATATTTTAGCTTATTTAGTATAGTATGGTGATTATATGATGTGAACTTAAATGTATAAGTGAGATTCATATAGCCGACCCCAACTGTTTGGAACTGAGGTGTAGTTTTTGTAGTTGTTCATGACAGCGTTGGAGTTCAACTATGTGTACCATTGTAAATTTATGGGGAGATTCGAAACTTCTAACTTGATTTCCTTCATTTATTTTCGGTTCTTTTCATCTGACTGAAATGTTTTTATTTCCCCAATCAAAATTAACTTGCATTTTCTGAAAATGGTCTGTTGTTTCACAGTTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAAGTAAAAATACCTTCATTATCTTAATTGTTTATCTGTCCTTGCTGTTCTTTTCCCTTGGCTGCCGTCAGATAAAATATTGTTGAATCAAGACTTGAAGATCTGTGTTGCTTATATCAAATTAATCCGTTAAAGTTTATTTCGTTTCTTGACCATTGACCTATTCTTGTCCAGTGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGG-CCTTGAAAGTGAGTTTTTTTAGCATTGATGTGGTTATCTTAGATTCATCGTCTATTTTTTTATGTTTGTTCCCATATTAATGGACTTATTTCTCAATAATGTTTCTGATGCAGAAGCTGTG-CCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAG-AGAATGTG</genome_strand>
        <mrna_strand>CGCTTTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAA...........................................................................................................................................................................TGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATACAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCCTTGAAA.........................................................................................................AAGCTGTGCCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422261" ref_strand="+" ref_description="SGN-E422261 [STM-40-M11]">
      <seq>cttgtctgatgatcaagacaaggctcaccagggaggcggagaaggtgaaagaggatcacagctttcaggtaatgcagatcaaaacgggaaggttaacaagaaaaggaaggatgaagagtatgaaagcgatgaaaatggaaatgacgatgaagatcctggaactcagaagaaacctcgtgttgtttgggctatagagcttcacaagaagtttgttacagcagttcatcagttaggccttgaaaaagctgtgcctaagaggattcttgatctgatgaatgttgaaggacttacaagagagaatgtggcgagccatctccagaagtataggctcttcttgaaaaggatcaatgcggcagatgcccagcaagccaacttggctgccgctgcattagggggtaaagattctgcgtacatgcgaatgggttcactggatgggcttggtggttttcgaacgttggctggatcaggaaggttcggtcaggctagcttatcatcatcatatgcatcaggaggcatgcttggcagactaaatagtccttctggtgtaagccttcacaatctagcatcttcacctatgctccaacctaatcatggtcaaaatttgagtaacaactccatcaatgccttgatgaaatttaatgcaaacgttccacctgcaagccagaatgctaatttgttccaagggattcctgcatcgttggagcttgatcaactgcagcagagtaagagtgcccacggataggagagttgaatcatttggatgagtcaggactgcatacagcggccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="82845" stop="84892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83142" g_stop="83383" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83384" i_stop="83488" i_length="105">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83489" g_stop="83565" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="319" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83566" i_stop="84121" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84122" g_stop="84592" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="789" r_length="470" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E422261" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83142" e_stop="83383"/>
          <exon e_start="83489" e_stop="83565"/>
          <exon e_start="84122" e_stop="84592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAAGTGAGTTTTTTTAGCATTGATGTGGTTATCTTAGATTCATCGTCTATTTTTTTATGTTTGTTCCCATATTAATGGACTTATTTCTCAATAATGTTTCTGATGCAGAAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAGGCATTATTCTCTCTTTGTTCTTAATAATTCCCTATGTTTGCATTTGAGTTCCTTTTCTTTATATTTTACAAAATTAGGAGTTTCGGCTATAGACCTTTTGTGAGATGTGAAAATGGATGAGGTGAATGTTAAAAGAAGGTACCAAGAATAGGAAGAATCATATATCCTTGCTACATCTTAGGAAAAATATAATTCTTGCTATGTTTTCACAAATGTTATTTAGCTCATTCAAACATTTCATGTTTAAATATGCATGTGGATATATAATAAAGGGAAACAATACAAATCTAAAGCTAGATTATTTCCTCCAACATTGTCTTAACGATTACAAAGGTGTTCCAGATCTGTTTTGATATGCTTTTCCTTGAGTCGAGGGTCTATTGGAAACAACCTCTCTACCTCCCAAGATTGGGGTAAGGTCTGCTTGTGGGATCAGGTTTGTTGTTGTTACAAAGGTGTTGCAGGAGTCGTCTGTCCTTCGGCCTTCGTGTCCTCTACTTTTTGGTAAAAGCACAAAGGTCTAAAATTTTAATTCGTCTTTTGTTCTGTGCCACAGAAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCATACATGCGAATGGGTTCACTGGACGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGTAGGTTCGGTCAAGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCGCAATCTAGCATCTACACCTATTCTCCAACCTAATCATGGTCAAAATATGAGTAATAACTCCCTCAATGCCTTGATGAAATTTAACGCAAATGTTCCACCTGCTAGCCAGAATGCTAATTTTTTCCAAGGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGT</genome_strand>
        <mrna_strand>CTTGTCTGATGATCAAGACAAGGCTCACCAGGGAGGCGGAGAAGGTGAAAGAGGATCACAGCTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAGTATGAAAGCGATGAAAATGGAAATGACGATGAAGATCCTGGAACTCAGAAGAAACCTCGTGTTGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAA.........................................................................................................AAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCGTACATGCGAATGGGTTCACTGGATGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGAAGGTTCGGTCAGGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCACAATCTAGCATCTTCACCTATGCTCCAACCTAATCATGGTCAAAATTTGAGTAACAACTCCATCAATGCCTTGATGAAATTTAATGCAAACGTTCCACCTGCAAGCCAGAATGCTAATTTGTTCCAAGGGATTCCTGCATCGTTGGAGCTTGATCAACTGCAGCAGAGTAAGAGTGCC-CACGGATAGGAGAGTTGAATCATTTGGATGAGTCAGGACTGCATACAGCGGCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448055" ref_strand="+" ref_description="SGN-E448055 [cSTS-1-J5]">
      <seq>caagtctgatgatcaagacaaggctcaccagggaggcggagaaggtgaaagaggatcacagctttcaggtaatgcagatcaaaacgggaaggttaacaagaaaaggaaggatgaagagtatgaaagcgatgaaaatggaaatgacgatgaagatcctggaactcagaagaaacctcgtgttgtttgggctatagagcttcacaagaagtttgttacagcagttcatcagttaggccttgaaaaagctgtgcctaagaggattcttgatctgatgaatgttgaaggacttacaagagagaatgtggcgagccatctccagaagtataggctcttcttgaaaaggatcaatgcggcagatgcccagcaagccaacttggctgccgctgcattagggggtaaagattctgcgtacatgcgaatgggttcactggatgggcttggtggttttcgaacgttggcttgatcaggaaggttcggtcaggctagcttatcatcatcatatgcatcangaggcatgcttggcagactaaatagtccttctgggtgtagccttcacaatctagcatcttcacctatgctccaacctaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="82842" stop="84695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83142" g_stop="83383" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83384" i_stop="83488" i_length="105">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83489" g_stop="83565" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="319" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83566" i_stop="84121" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84122" g_stop="84395" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="593" r_length="274" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E448055" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83142" e_stop="83383"/>
          <exon e_start="83489" e_stop="83565"/>
          <exon e_start="84122" e_stop="84395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAAGTGAGTTTTTTTAGCATTGATGTGGTTATCTTAGATTCATCGTCTATTTTTTTATGTTTGTTCCCATATTAATGGACTTATTTCTCAATAATGTTTCTGATGCAGAAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAGGCATTATTCTCTCTTTGTTCTTAATAATTCCCTATGTTTGCATTTGAGTTCCTTTTCTTTATATTTTACAAAATTAGGAGTTTCGGCTATAGACCTTTTGTGAGATGTGAAAATGGATGAGGTGAATGTTAAAAGAAGGTACCAAGAATAGGAAGAATCATATATCCTTGCTACATCTTAGGAAAAATATAATTCTTGCTATGTTTTCACAAATGTTATTTAGCTCATTCAAACATTTCATGTTTAAATATGCATGTGGATATATAATAAAGGGAAACAATACAAATCTAAAGCTAGATTATTTCCTCCAACATTGTCTTAACGATTACAAAGGTGTTCCAGATCTGTTTTGATATGCTTTTCCTTGAGTCGAGGGTCTATTGGAAACAACCTCTCTACCTCCCAAGATTGGGGTAAGGTCTGCTTGTGGGATCAGGTTTGTTGTTGTTACAAAGGTGTTGCAGGAGTCGTCTGTCCTTCGGCCTTCGTGTCCTCTACTTTTTGGTAAAAGCACAAAGGTCTAAAATTTTAATTCGTCTTTTGTTCTGTGCCACAGAAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCATACATGCGAATGGGTTCACTGGACGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGTAGGTTCGGTCAAGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCGCAATCTAGCATCTACACCTATTCTCCAACCTAATCATG</genome_strand>
        <mrna_strand>CAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGCGGAGAAGGTGAAAGAGGATCACAGCTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAGTATGAAAGCGATGAAAATGGAAATGACGATGAAGATCCTGGAACTCAGAAGAAACCTCGTGTTGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAA.........................................................................................................AAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCGTACATGCGAATGGGTTCACTGGATGGGCTTGGTGGTTTTCGAACGTTGGCTTGATCAGGAAGGTTCGGTCAGGCTAGCTTATCATCATCATATGCATCANGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGGTGTAGCCTTCACAATCTAGCATCTTCACCTATGCTCCAACCTAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543827" ref_strand="+" ref_description="SGN-E543827 [TUS-65-N13]">
      <seq>gggattcctgcatctttggagcttgatcaactgcagcagagcaagtgtgccacacacataggagagttgaatcctttggatgagtcaggactgcatacagtggccagtacattcacgaactctagattggttggtagcgcaaacagctctatgcccaatgtatcaaataatcctattttgcttcaagtaaattcccagcaaccactgacggggatgggatttggaaatcagacttctctcaacgtagcctcttttagctctgaggccttcaatactggtgtaagtggttcttccaattttctggaccatgatagatattctaacgagaattggcaaacttctctccagcctctgaagttccagtcaacctcctttccgttaaatgaacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaaaggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84185" stop="85559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84485" g_stop="85259" g_length="775"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E543827" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84485" e_stop="85259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACA</genome_strand>
        <mrna_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAAGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543834" ref_strand="+" ref_description="SGN-E543834 [TUS-65-N17]">
      <seq>gggattcctgcatctttggagcttgatcaactgcagcagagcaagtgtgccacacacataggagagttgaatcctttggatgagtcaggactgcatacagtggccagtacattcacgaactctagattggttggtagcgcaaacagctctatgcccaatgtatcaaataatcctattttgcttcaagtaaattcccagcaaccactgacggggatgggatttggaaatcagacttctctcaacgtagcctcttttagctctgaggccttcaatactggtgtaagtggttcttccaattttctggaccatgatagatattctaacgagaattggcaaacttctctccagcctctgaagttccagtcaacctcctttccgttaaatgaacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttcaagagggagaaacacaatgccgtgaaaagtttaggggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84185" stop="85338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84485" g_stop="85038" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E543834" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84485" e_stop="85038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGA-GGAGAAACACAATGCCGTG-AAAGTTTAGGGGCTGC</genome_strand>
        <mrna_strand>GGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGGAGAAACACAATGCCGTGAAAAGTTTAGGGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306427" ref_strand="+" ref_description="SGN-E306427 [cLEX-13-N14]">
      <seq>ggattcctgcatctttggagcttgatcaactgcagcagagcaagtgtgccacacacataggagagttgaatcctttggatgagtcaggactgcatacagtggccagtacattcacgaactctagattggttggtagcgcaaacagctctatgcccaatgtatcaaataatcctattttgcttcaagtaaattcccagcaaccactgacggggatgggatttggaaatcagacttctctcaacgtagcctcttttagctctgaggccttcaatactggtgtaagtggttcttccaattttctggaccatgatagatattctaacgagaattggcaaacttctctccagcctctgaagttccagtcaacctcctttccgttaaatgaacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84186" stop="85299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84486" g_stop="84999" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E306427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84486" e_stop="84999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTC</genome_strand>
        <mrna_strand>GGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422262" ref_strand="-" ref_description="SGN-E422262 [STM-40-M11]">
      <seq>tgatagatataatgagaattggcaaacttctctcccagccctttgaagttccagtcaactccctttcccgttaaatgaacctttcagcaaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcttttgcagaacaaccctgttgatttttcaacctctgccatagtttccgtacctttcgaggcttcaagaggagaaacacaatgccgtgaaagtttagagggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttacctcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttaggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaagagaggatctagtgatatagcaaaatgttatttgctcatttaagagtctcttaacaatatatgcatactatgcctttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84497" stop="87199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84793" g_stop="85405" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86908" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="802" r_length="188" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E422262" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422262" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84793" e_stop="85405"/>
          <exon e_start="86719" e_stop="86908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGATATTCTAACGAGAATTGGCAAACTTCTCT-CCAG-CCTCTGAAGTTCCAGTCAACCTCCTTT-CCGTTAAATGAACCTTTCAGC-AACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTT</genome_strand>
        <mrna_strand>TGATAGATA---TAATGAGAATTGGCAAACTTCTCTCCCAGCCCTTTGAAGTTCCAGTCAACTCCCTTTCCCGTTAAATGAACCTTTCAGCAAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCTTTTGCAGAACAACCCTGTTGATTTTTCAACCTCTGCCATAGTTTCCGTACCTTTCGAGGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGAGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTACCTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTT--A-GGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAAGAGAGGATCTAGTGATATAGCAAAATGTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTT-TTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548942" ref_strand="+" ref_description="SGN-E548942 [TUS-65-N13](-)">
      <seq>ccgttaaatgacctttcagcaacagccatttgcctcaagacagagtacgagacaatgatacttcaactggccctcatttgcagaacaatcctgttgatttttcaacctccaccatagtttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcacacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagactacctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaggagaggatctagtgatatagcaaaattttatttgctcatttaagagtctcaacaacatatgcatactatgccttctttttcattgttattttcctgtccaggaacggtgttatcgatcgtagaaaactcttaaacgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84560" stop="87257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84860" g_stop="85405" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86956" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="783" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="784" polyA_stop="794"/>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E548942" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84860" e_stop="85405"/>
          <exon e_start="86719" e_stop="86956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTA</genome_strand>
        <mrna_strand>CCGTTAAATG-ACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206621" ref_strand="+" ref_description="SGN-E206621 [cLEC-31-D21]">
      <seq>ttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcacacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagactacctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaggagaggatctagtgatatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84679" stop="87138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84979" g_stop="85405" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86838" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="547" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E206621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84979" e_stop="85405"/>
          <exon e_start="86719" e_stop="86838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGC</genome_strand>
        <mrna_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206742" ref_strand="+" ref_description="SGN-E206742 [cLEC-31-D19]">
      <seq>ttccgtacctttcgaagcttcaagaggagaaacacaatgccgtgaaagtttaggggctgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctgtggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaactgcatatcaaatggtagttcttcaatgcacacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagactacctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatttgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84679" stop="87109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84979" g_stop="85405" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86809" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="518" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E206742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84979" e_stop="85405"/>
          <exon e_start="86719" e_stop="86809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAG</genome_strand>
        <mrna_strand>TTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426105" ref_strand="-" ref_description="SGN-E426105 [STM-46-E13]">
      <seq>tgaaagtttagggggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggttatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttagaaggaggagaattcggatttgatgcttattcacttgcttcaggtttatgaggtttttgtaactagcaagttaggaaggggaggatgtagtgatatagcaaatttttatttgctcatttaagagtctcttaacaatatatgcatactatgccttctttttatattgttcttttcccgtccgggaacgttgttatcgatcgtagaaaactcttagataataattacttgttgctttccaataagatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84721" stop="87275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85021" g_stop="85405" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86984" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="654" r_length="269" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E426105" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426105" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85021" e_stop="85405"/>
          <exon e_start="86719" e_stop="86984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTT-CATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCGGTT</genome_strand>
        <mrna_strand>TGAAAGTTTAGGGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGTTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGAAGGAGGAGAATTCGGATTTGATGCTTATTCACTTGCTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGGGAGGATGTAGTGATATAGCAAATTTTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTTCTTTTTATATTGTTCTTTTCCCGTCCGGGAACGTTGTTATCGATCGTAGAAAACTCTTAGATAATAATTACTTGTTGCTTTCCAATAAGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456068" ref_strand="+" ref_description="SGN-E456068 [cSTS-28-M20]">
      <seq>tgaaagtttagggggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggttatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttagaaggaggagaattcggatttgatgcttattcacttgcttcaggtttatgaggtttttgtaactagcaagttaggaaggggaggatgtagtgatatagcaaatttttatttgctcatttaagagtctcttaacaatatatgcatactatgccttcttttttattgttcttttcccgtccgggaacgttgttatcgatcgtagaaaactcttaaatgctaattacttgttgcttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84721" stop="87275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85021" g_stop="85405" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86983" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="652" r_length="267" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E456068" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85021" e_stop="85405"/>
          <exon e_start="86719" e_stop="86983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCGGT</genome_strand>
        <mrna_strand>TGAAAGTTTAGGGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGTTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGAAGGAGGAGAATTCGGATTTGATGCTTATTCACTTGCTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGGGAGGATGTAGTGATATAGCAAATTTTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTTCTTTTTTATTGTTCTTTTCCCGTCCGGGAACGTTGTTATCGATCGTAGAAAACTCTTAAATGCTAATTACTTGTTGCTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426104" ref_strand="+" ref_description="SGN-E426104 [STM-46-E13]">
      <seq>tgaaagtttagggggtgctgttcagattatgaaccaagcaacctgccaacggtggccagatcagaaccaacattattcccacaattcaaacaatatttttggtaacatgagctctcaagtttctagcaatggtggaatggcctctttaactcatcctatggaccaaaacaatgatatgttctgcacaagggtggagacttctttgaccggcagatcaaatggaggttcttcaatgcacatacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaagacaaatgaagactacctctttcagacaacaaagcaacaagttggttttcttcctcagggttatggctcccttgatgatcttatgggtgaaatgaaacgggatcaagatggagccatgttagaaggaggagaattcggatttgatgcttattcacttgcttcaggtttatgaggtttttgtaactagcaagttaggaaggggaggatgtagtgatatagcaaatttttatttgctcatttaagagtctcttaacaatatatgcatactatgccttnctttttattggtcttttcccgtccgggaacgttgttatcgatcgtagaaaactcttaaatgctaattacttggtgcttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84721" stop="87275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85021" g_stop="85405" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86981" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="650" r_length="265" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E426104" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E426104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85021" e_stop="85405"/>
          <exon e_start="86719" e_stop="86981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTC--AACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCG</genome_strand>
        <mrna_strand>TGAAAGTTTAGGGGGTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTATGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGACCGGCAGATCAAATGGAGGTTCTTCAATGCACATACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAGACAAATGAAGACTACCTCTTTCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGTTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGAAGGAGGAGAATTCGGATTTGATGCTTATTCACTTGCTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGGGAGGATGTAGTGATATAGCAAATTTTTATTTGCTCATTTAAGAGTCTCTTAACAATATATGCATACTATGCCTTNCTTTTTATTGGTCTTTTCCCGTCCGGGAACGTTGTTATCGATCGTAGAAAACTCTTAAATGCTAATTACTTGGTGCTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543833" ref_strand="+" ref_description="SGN-E543833 [TUS-65-N17](-)">
      <seq>atatcaaatggtagttcttcaatgcgcacacacaatcgtgaaagtgaaaaattaactcatgactcgaggacaaaaacaaatgaagacttcctcttccagacaacaaagcaacaagttggttttcttcctcagggctatggctcccttgatgatcttatgggtgaaatgaaacaggatcaagatggagccatgttagacggaggagaattcggatctgatgcttattcacttggttcaggtttatgaggtttttgtaactagcaagttaggaaggagaggatctagtgatatagcaaaattttatttgctcatttaagagtctcaacaacatatgcatactatgccttctttttcattgttttttcctgtccaggaacggtgttatcgatcgtagaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="+" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="84932" stop="87246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85232" g_stop="85405" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86719" g_stop="86946" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="401" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="+" ref_id="SGN-E543833" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85232" e_stop="85405"/>
          <exon e_start="86719" e_stop="86946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAGGTAAGCGAACTCTTTTGGTCTGTGTCTTATTTATGAAGCTTTTATTCTGAAGTTTAGTCATAGATTCAAACAAGGTATGCACAAGCTGGCCTAAGCACCACACCTTTTTTTTTTAAAAAAGAAGAATTTTGAGACCTGAATAGCAGCTGAGCGTACTACTGTTTTTAAATACTTGACCTGAGTCCGCGGTCTCTGGTGGTGATAGATCAGATAAACTTTCTCGAAGAAAGGATGCTACTTAACTTGGTGGTCTTTTTAGTGTAAATAAATGTTTATAAGTTTTTTTTTTCAAAAATATATTTGTTTATATGACATCGAGAGTGATTTAAGTTATAGCTGTATTACCTTGTGACCAACACCAAAAGAGATCTATAGAGGGTTACAAACCACCCTGCACACTCTCTACCGCCACCACAAAAGAGGAGTAAAAAACACCATTAAATGGCATTGCCGATTGTCTTCTACTCTGGCAACTTGGACTTGGAGCACCTTTTATTGCTAGAGTTACTTATCACTTGAGGAACTTAATGTCTTGGATGTATACTAGTGAGGTTTGTTTACTTCACATATTTATGAGTCAACTTATAGGAATTCTCCATAAAATCGACCTTTAATAATGAAAAGTAACTTAACAAGCTACTAGCAGTTCGAACTGTCTTCTAGGGTGTGCTGTAGAGGCAATTCTGCTCTCATGAGGGAAGACGAAAGCTTTTCTTTTGAACAGAATTATGCTTTAGAGCTTCACTGTGCCTGTCTGAGAAATAGTTTATATGGTCTACCGCTGAAATATGTTTATACTAACAAAAGAAGACGAAAATGAGTTAAAGGTAGGTCTGATCCTAATGTTTCTGTTAGTTTGTACTAATCGATCAATATCAACACCTAATGCATCTATTGCTGCCTTCAACTTTTAAGCTCATTGTTTTATGCATCTCTTTTCAGTTGAATAATTCTATGTTAGATTCAATTTCTTTCTTAGTTAGTCCCCTTTGCTTTTACAAGCACGGATTTTGAATACTCTCAGTTGTTTCTTCTTAAAGATTAATGGTCATTATTATGTCGGTTTGTTGTGGGTTGATTTCTCAAATGGTCACTCGACTCTCAGCTAGTAATCTGTGAAATCAACTCGTTTATTGCTGTCTAACTTTGTTGCTAAAACTCTCAAAAAATGTTGTCACAGCTGTGTTGGATCCTCCAAAATGCAGTTTTGGAAGATCCGACAAGTACTCAGTGACATCTTCGAAGAGTCTGAGCAACATAACTCAGACATTGGCGTGTAAACGTACTAAATGATTTTGTTTGAAAAAATGCAGGATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTC</genome_strand>
        <mrna_strand>ATATCAAATGGTAGTTCTTCAATGCGCACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTTCCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATCTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTT-TTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710412" ref_strand="+" ref_description="SGN-E710412 [FA55BD07]">
      <seq>gtgtaatcatgtctagtgaccgagtccttcaacatgctagtttttctgtcattgttatgttgactgctctcacttgtaatttccttgaagagttctatcaagtctttaatacttttagttcttcaagcctgtgataccttatttgcatgaaccaattatatagtttgtggtatctcagtttgttgtttatgttaaatttcatgaatgatcctcgcgttgagcatgttcattccattagatataatttgaagcttttgctttcctaagatcctcgacgtgtcattgacgacattaaacgctctgctgattagatttgtagaaaaccatatttgtctacctttctcttcctcttcgtattgaaatgaatatcgtttactaataaaacattaggcattattccttccatacccaattctgaaacttttgtttcatgtaaactaaagaagtcaatagtatatttagttacacagactccctattttatttcaagccttctgtttgttggtctatcaaatgtgcattttttttattcgactgtggtgtcttggccaagttttcacgcacgtcaattagtacctccctctcactaaggcttggacaagtcgaaagaaatcacctagtgtttttgcatgttttttccaatggattcttgtttttcgtcttaacaaaatgtattttgttggcagatattaagtaggcaaacacgtcttgacgatgagatttacaaccagcttgttgagaaggctaaagaagaaggctacgacgtgagtaagctccacaagacgccccaatctgattccccaccagatagtgaagatagccccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0215O16-Y9e7q/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0215O16.1" temp_strand="-" temp_description="C12HBa0215O16.1  AC217333.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0215O16 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="98652" stop="97494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98621" g_stop="97794" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0215O16.1" gen_strand="-" ref_id="SGN-E710412" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0215O16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98621" e_stop="97794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</genome_strand>
        <mrna_strand>GTGTAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCCCAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>78</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2794" PGL_stop="101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2794" e_stop="2741"/>
            <exon e_start="1519" e_stop="101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2794" e_stop="2741" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="2740" i_stop="1520" i_length="1221"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="1519" e_stop="101" e_length="1419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2794" stop="2741"/>
              <exon start="1519" stop="769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2790" stop="2741"/>
              <exon start="1519" stop="1033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2776" stop="2741"/>
              <exon start="1519" stop="1263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2775" stop="2741"/>
              <exon start="1519" stop="835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2773" stop="2741"/>
              <exon start="1519" stop="1014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2773" stop="2741"/>
              <exon start="1519" stop="1014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2773" stop="2741"/>
              <exon start="1519" stop="1063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2769" stop="2741"/>
              <exon start="1519" stop="1082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1476" stop="777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1125" stop="865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="999" stop="404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="913" stop="499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="836" stop="135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="836" stop="322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="784" stop="101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTTGAAAAAGTAACCTTTTTGATCTTCTCTCTCGCTTGATCTTCTCTAAG : TTCCGTAACAATGTCGGATGGTCAGGAGAGCGATAAGAATATTGAGATATGGAAGATTAAGAAACTTATCAAGGCACTGGAAGCTGCTAGAGGCAATGGCACAAGCATGATTTCACTTATCATGCCTCCACGTGATCAAGTATCTCGTGTTACCAAGATGCTTGGAGATGAGTTTGGAACTGCATCAAATATTAAGAGCAGAGTAAATCGACAATCTGTTCTTGGTGCAATCACATCTGCTCAGCAGAGGCTTAAACTCTACAACAAGGTTCCACCAAATGGGCTTGTTCTTTACACTGGAACAATTGTGACCGATGATGGGAAAGAAAAGAAGGTTACTATTGATTTTGAGCCATTCAAGCCCATTAATGCATCACTCTATCTTTGTGACAACAAATTCCACACTGAAGCCCTGAATGAACTTCTGGAATCTGATGACAAATTTGGATTTATAGTGATGGATGGGAATGGGACTCTTTTTGGGACATTGAGTGGCAACACGCGTGAGGTCCTTCATAAGTTTAGTGTTGATTTGCCCAAGAAACACGGAAGAGGAGGACAATCAGCCTTGCGTTTTGCTCGTCTCCGAATGGAGAAACGACATAACTACGTGAGGAAGACAGCTGAGCTTGCAACTCAATTTTATATAAATCCTGCCACCAGTCAGCCCAATGTCTCCGGCCTGATACTCGCTGGTTCTGCTGACTTCAAAACAGAGCTCAGTCAATCTGATATGTTTGATCCTCGTCTTCAGGCTAAGATTCTAAATGTGGTTGATGTTTCTTATGGAGGAGAAAATGGTTTCAACCAAGCAATTGAGCTGTCTGCTGAGATCTTAGCGAATGTGAAGTTTATACAAGAGAAGAAATTGATAGGCAAGTACTTTGAGGAGATTAGTCAGGACACTGGGAAATACGTCTTTGGAGTGGATGATACATTAAAAGTTCTGGAAATGGGTGCTATTGAGACACTTATTGTGTGGGAAAATCTGGATATTACTAGGTATGTGCTGAAAAATAGCGGTTCTGGAGAAACTGTTGTCAAACACTTGAACAAGGGGCAGGAGGCTGATCAGAGTAACTTCCGTGATCCTGCTACAAATGCAGAATTAGAGGTTCAGGAAAAATTGTCACTGCTCGAGTGGTTTGCTAATGAGTACAGGAAATTTGGTTGTAGTCTGGAGTTTGTGACCAACAAGTCACAAGAAGGATCTCAGTTTTGTCGAGGTTTTGGTGGTATTGGAGGACTCCTCCGTTATCAGCTTGATGTTCGAGCTTTTGATGAGCTTTCTGATGATGGTGAAGTTTACGAAGACTCAGACTAGCAATTACCAACTTCTCAAATACCAGTGCAGAAGTTGAGCGGGAAAGCCTGTACTGGTGTGCAAGGGCTGTCGCCTTATTTGTACGCTCATGTTCT</gDNA_template>
            <first_frame> K  F  *  K  S  N  L  F  D  L  L  S  R  L  I  F  S  K  :  F  R  N  N  V  G  W  S  G  E  R  *  E  Y  *  D  M  E  D  *  E  T  Y  Q  G  T  G  S  C  *  R  Q  W  H  K  H  D  F  T  Y  H  A  S  T  *  S  S  I  S  C  Y  Q  D  A  W  R  *  V  W  N  C  I  K  Y  *  E  Q  S  K  S  T  I  C  S  W  C  N  H  I  C  S  A  E  A  *  T  L  Q  Q  G  S  T  K  W  A  C  S  L  H  W  N  N  C  D  R  *  W  E  R  K  E  G  Y  Y  *  F  *  A  I  Q  A  H  *  C  I  T  L  S  L  *  Q  Q  I  P  H  *  S  P  E  *  T  S  G  I  *  *  Q  I  W  I  Y  S  D  G  W  E  W  D  S  F  W  D  I  E  W  Q  H  A  *  G  P  S  *  V  *  C  *  F  A  Q  E  T  R  K  R  R  T  I  S  L  A  F  C  S  S  P  N  G  E  T  T  *  L  R  E  E  D  S  *  A  C  N  S  I  L  Y  K  S  C  H  Q  S  A  Q  C  L  R  P  D  T  R  W  F  C  *  L  Q  N  R  A  Q  S  I  *  Y  V  *  S  S  S  S  G  *  D  S  K  C  G  *  C  F  L  W  R  R  K  W  F  Q  P  S  N  *  A  V  C  *  D  L  S  E  C  E  V  Y  T  R  E  E  I  D  R  Q  V  L  *  G  D  *  S  G  H  W  E  I  R  L  W  S  G  *  Y  I  K  S  S  G  N  G  C  Y  *  D  T  Y  C  V  G  K  S  G  Y  Y  *  V  C  A  E  K  *  R  F  W  R  N  C  C  Q  T  L  E  Q  G  A  G  G  *  S  E  *  L  P  *  S  C  Y  K  C  R  I  R  G  S  G  K  I  V  T  A  R  V  V  C  *  *  V  Q  E  I  W  L  *  S  G  V  C  D  Q  Q  V  T  R  R  I  S  V  L  S  R  F  W  W  Y  W  R  T  P  P  L  S  A  *  C  S  S  F  *  *  A  F  *  *  W  *  S  L  R  R  L  R  L  A  I  T  N  F  S  N  T  S  A  E  V  E  R  E  S  L  Y  W  C  A  R  A  V  A  L  F  V  R  S  C  S </first_frame>
            <second_frame>  N  F  E  K  V  T  F  L  I  F  S  L  A  *  S  S  L  S :   S  V  T  M  S  D  G  Q  E  S  D  K  N  I  E  I  W  K  I  K  K  L  I  K  A  L  E  A  A  R  G  N  G  T  S  M  I  S  L  I  M  P  P  R  D  Q  V  S  R  V  T  K  M  L  G  D  E  F  G  T  A  S  N  I  K  S  R  V  N  R  Q  S  V  L  G  A  I  T  S  A  Q  Q  R  L  K  L  Y  N  K  V  P  P  N  G  L  V  L  Y  T  G  T  I  V  T  D  D  G  K  E  K  K  V  T  I  D  F  E  P  F  K  P  I  N  A  S  L  Y  L  C  D  N  K  F  H  T  E  A  L  N  E  L  L  E  S  D  D  K  F  G  F  I  V  M  D  G  N  G  T  L  F  G  T  L  S  G  N  T  R  E  V  L  H  K  F  S  V  D  L  P  K  K  H  G  R  G  G  Q  S  A  L  R  F  A  R  L  R  M  E  K  R  H  N  Y  V  R  K  T  A  E  L  A  T  Q  F  Y  I  N  P  A  T  S  Q  P  N  V  S  G  L  I  L  A  G  S  A  D  F  K  T  E  L  S  Q  S  D  M  F  D  P  R  L  Q  A  K  I  L  N  V  V  D  V  S  Y  G  G  E  N  G  F  N  Q  A  I  E  L  S  A  E  I  L  A  N  V  K  F  I  Q  E  K  K  L  I  G  K  Y  F  E  E  I  S  Q  D  T  G  K  Y  V  F  G  V  D  D  T  L  K  V  L  E  M  G  A  I  E  T  L  I  V  W  E  N  L  D  I  T  R  Y  V  L  K  N  S  G  S  G  E  T  V  V  K  H  L  N  K  G  Q  E  A  D  Q  S  N  F  R  D  P  A  T  N  A  E  L  E  V  Q  E  K  L  S  L  L  E  W  F  A  N  E  Y  R  K  F  G  C  S  L  E  F  V  T  N  K  S  Q  E  G  S  Q  F  C  R  G  F  G  G  I  G  G  L  L  R  Y  Q  L  D  V  R  A  F  D  E  L  S  D  D  G  E  V  Y  E  D  S  D  *  Q  L  P  T  S  Q  I  P  V  Q  K  L  S  G  K  A  C  T  G  V  Q  G  L  S  P  Y  L  Y  A  H  V   </second_frame>
            <third_frame>   I  L  K  K  *  P  F  *  S  S  L  S  L  D  L  L  *   : V  P  *  Q  C  R  M  V  R  R  A  I  R  I  L  R  Y  G  R  L  R  N  L  S  R  H  W  K  L  L  E  A  M  A  Q  A  *  F  H  L  S  C  L  H  V  I  K  Y  L  V  L  P  R  C  L  E  M  S  L  E  L  H  Q  I  L  R  A  E  *  I  D  N  L  F  L  V  Q  S  H  L  L  S  R  G  L  N  S  T  T  R  F  H  Q  M  G  L  F  F  T  L  E  Q  L  *  P  M  M  G  K  K  R  R  L  L  L  I  L  S  H  S  S  P  L  M  H  H  S  I  F  V  T  T  N  S  T  L  K  P  *  M  N  F  W  N  L  M  T  N  L  D  L  *  *  W  M  G  M  G  L  F  L  G  H  *  V  A  T  R  V  R  S  F  I  S  L  V  L  I  C  P  R  N  T  E  E  E  D  N  Q  P  C  V  L  L  V  S  E  W  R  N  D  I  T  T  *  G  R  Q  L  S  L  Q  L  N  F  I  *  I  L  P  P  V  S  P  M  S  P  A  *  Y  S  L  V  L  L  T  S  K  Q  S  S  V  N  L  I  C  L  I  L  V  F  R  L  R  F  *  M  W  L  M  F  L  M  E  E  K  M  V  S  T  K  Q  L  S  C  L  L  R  S  *  R  M  *  S  L  Y  K  R  R  N  *  *  A  S  T  L  R  R  L  V  R  T  L  G  N  T  S  L  E  W  M  I  H  *  K  F  W  K  W  V  L  L  R  H  L  L  C  G  K  I  W  I  L  L  G  M  C  *  K  I  A  V  L  E  K  L  L  S  N  T  *  T  R  G  R  R  L  I  R  V  T  S  V  I  L  L  Q  M  Q  N  *  R  F  R  K  N  C  H  C  S  S  G  L  L  M  S  T  G  N  L  V  V  V  W  S  L  *  P  T  S  H  K  K  D  L  S  F  V  E  V  L  V  V  L  E  D  S  S  V  I  S  L  M  F  E  L  L  M  S  F  L  M  M  V  K  F  T  K  T  Q  T  S  N  Y  Q  L  L  K  Y  Q  C  R  S  *  A  G  K  P  V  L  V  C  K  G  C  R  L  I  C  T  L  M  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2751" stop="2741"/>
                    <exon start="1519" stop="196"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1332</number_coding_nucleotides>
                  <number_encoded_amino_acids>444</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLSSVTMSDGQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEEISQDTGKYVFGVDDTLKVLEMGAIETLIVWENLDITRYVLKNSGSGETVVKHLNKGQEADQSNFRDPATNAELEVQEKLSLLEWFANEYRKFGCSLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDVRAFDELSDDGEVYEDSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="404" PGL_stop="999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="404" e_stop="999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="404" e_stop="999" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="404" stop="999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTCTAATTCTGCATTTGTAGCAGGATCACGGAAGTTACTCTGATCAGCCTCCTGCCCCTTGTTCAAGTGTTTGACAACAGTTTCTCCAGAACCGCTATTTTTCAGCACATACCTAGTAATATCCAGATTTTCCCACACAATAAGTGTCTCAATAGCACCCATTTCCAGAACTTTTAATGTATCATCCACTCCAAAGACGTATTTCCCAGTGTCCTGACTAATCTCCTCAAAGTACTTGCCTATCAATTTCTTCTCTTGTATAAACTTCACATTCGCTAAGATCTCAGCAGACAGCTCAATTGCTTGGTTGAAACCATTTTCTCCTCCATAAGAAACATCAACCACATTTAGAATCTTAGCCTGAAGACGAGGATCAAACATATCAGATTGACTGAGCTCTGTTTTGAAGTCAGCAGAACCAGCGAGTATCAGGCCGGAGACATTGGGCTGACTGGTGGCAGGATTTATATAAAATTGAGTTGCAAGCTCAGCTGTCTTCCTCACGTAGTTATGTCGTTTCTCCATTCGGAGACGAGCAAAACGCAAGGCTGATTGTCCTCCTCTTCCGTGTTTCTTGGGCAAATCAACACTAAA</gDNA_template>
            <first_frame> T  S  N  S  A  F  V  A  G  S  R  K  L  L  *  S  A  S  C  P  L  F  K  C  L  T  T  V  S  P  E  P  L  F  F  S  T  Y  L  V  I  S  R  F  S  H  T  I  S  V  S  I  A  P  I  S  R  T  F  N  V  S  S  T  P  K  T  Y  F  P  V  S  *  L  I  S  S  K  Y  L  P  I  N  F  F  S  C  I  N  F  T  F  A  K  I  S  A  D  S  S  I  A  W  L  K  P  F  S  P  P  *  E  T  S  T  T  F  R  I  L  A  *  R  R  G  S  N  I  S  D  *  L  S  S  V  L  K  S  A  E  P  A  S  I  R  P  E  T  L  G  *  L  V  A  G  F  I  *  N  *  V  A  S  S  A  V  F  L  T  *  L  C  R  F  S  I  R  R  R  A  K  R  K  A  D  C  P  P  L  P  C  F  L  G  K  S  T  L   </first_frame>
            <second_frame>  P  L  I  L  H  L  *  Q  D  H  G  S  Y  S  D  Q  P  P  A  P  C  S  S  V  *  Q  Q  F  L  Q  N  R  Y  F  S  A  H  T  *  *  Y  P  D  F  P  T  Q  *  V  S  Q  *  H  P  F  P  E  L  L  M  Y  H  P  L  Q  R  R  I  S  Q  C  P  D  *  S  P  Q  S  T  C  L  S  I  S  S  L  V  *  T  S  H  S  L  R  S  Q  Q  T  A  Q  L  L  G  *  N  H  F  L  L  H  K  K  H  Q  P  H  L  E  S  *  P  E  D  E  D  Q  T  Y  Q  I  D  *  A  L  F  *  S  Q  Q  N  Q  R  V  S  G  R  R  H  W  A  D  W  W  Q  D  L  Y  K  I  E  L  Q  A  Q  L  S  S  S  R  S  Y  V  V  S  P  F  G  D  E  Q  N  A  R  L  I  V  L  L  F  R  V  S  W  A  N  Q  H  *  </second_frame>
            <third_frame>   L  *  F  C  I  C  S  R  I  T  E  V  T  L  I  S  L  L  P  L  V  Q  V  F  D  N  S  F  S  R  T  A  I  F  Q  H  I  P  S  N  I  Q  I  F  P  H  N  K  C  L  N  S  T  H  F  Q  N  F  *  C  I  I  H  S  K  D  V  F  P  S  V  L  T  N  L  L  K  V  L  A  Y  Q  F  L  L  L  Y  K  L  H  I  R  *  D  L  S  R  Q  L  N  C  L  V  E  T  I  F  S  S  I  R  N  I  N  H  I  *  N  L  S  L  K  T  R  I  K  H  I  R  L  T  E  L  C  F  E  V  S  R  T  S  E  Y  Q  A  G  D  I  G  L  T  G  G  R  I  Y  I  K  L  S  C  K  L  S  C  L  P  H  V  V  M  S  F  L  H  S  E  T  S  K  T  Q  G  *  L  S  S  S  S  V  F  L  G  Q  I  N  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="757" stop="957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSLKTRIKHIRLTELCFEVSRTSEYQAGDIGLTGGRIYIKLSCKLSCLPHVVMSFLHSETSKTQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="3558" PGL_stop="5029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3558" e_stop="3926"/>
            <exon e_start="4275" e_stop="4482"/>
            <exon e_start="4846" e_stop="4932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.772" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3558" e_stop="3926" e_length="369"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="3927" i_stop="4274" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4275" e_stop="4482" e_length="208"/>
          </exon>
          <intron i_serial="2" don_prob="0.772" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4483" i_stop="4845" i_length="363"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="4846" e_stop="4932" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3558" stop="3926"/>
              <exon start="4275" stop="4482"/>
              <exon start="4846" stop="4932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAAGCTAATGCATTTTTTGTGTTGTATCACCGGCGTGGCTGACAAGAACACGGTGGTGGTACGTCATCATCCTCTCGGAAAACGTTCATCCAAACTACATAACAACAATAGTAATAATTTGGACAATGGAATTTGTGGAATTTTATACAAATGGGCAAATTTTGGTAGAGGATGGAGGCCTCGTTGGTTTGTTCTTTATGACGGTGTACTTTTCTACTATAAAATCAACGGAAAAGTTTTTAATTTCGAAACACAGAATGGCTTCACTGTCATAGGGAAGAAATCATTTCGTTTCATCAACACATGTAAAACAACTCCGTCTTCCCAATTCCTCTCTCGTAAACCATTACGTGAAATCCACCTCAAG : GATTCAACAGTAATGGGAAGTTGTTCAGACGATCGAAGGTTTTTGATAATTACTGGGAAGAAGAAGCTGCAATTGAAGGCAGAGTCTAAGGACGATAGGTTAATATGGTTGGAAGGATTGTTTGCAGCAAAGAAGGCATTTATAACAAGTGATTTTGTTCATAACCCTAGAATGAACAATAATTGCAAGGTTGGAACTCGAGACAGCG : GAGGAAACACAAGCAGATCGAACGAAGAGCATTATAGGCAGGAGGAGACTGATGATGATGTTCACACTGATAACTCGTTTTTTGATG</gDNA_template>
            <first_frame> R  K  L  M  H  F  L  C  C  I  T  G  V  A  D  K  N  T  V  V  V  R  H  H  P  L  G  K  R  S  S  K  L  H  N  N  N  S  N  N  L  D  N  G  I  C  G  I  L  Y  K  W  A  N  F  G  R  G  W  R  P  R  W  F  V  L  Y  D  G  V  L  F  Y  Y  K  I  N  G  K  V  F  N  F  E  T  Q  N  G  F  T  V  I  G  K  K  S  F  R  F  I  N  T  C  K  T  T  P  S  S  Q  F  L  S  R  K  P  L  R  E  I  H  L  K  :  D  S  T  V  M  G  S  C  S  D  D  R  R  F  L  I  I  T  G  K  K  K  L  Q  L  K  A  E  S  K  D  D  R  L  I  W  L  E  G  L  F  A  A  K  K  A  F  I  T  S  D  F  V  H  N  P  R  M  N  N  N  C  K  V  G  T  R  D  S   : G  G  N  T  S  R  S  N  E  E  H  Y  R  Q  E  E  T  D  D  D  V  H  T  D  N  S  F  F  D  </first_frame>
            <second_frame>  E  S  *  C  I  F  C  V  V  S  P  A  W  L  T  R  T  R  W  W  Y  V  I  I  L  S  E  N  V  H  P  N  Y  I  T  T  I  V  I  I  W  T  M  E  F  V  E  F  Y  T  N  G  Q  I  L  V  E  D  G  G  L  V  G  L  F  F  M  T  V  Y  F  S  T  I  K  S  T  E  K  F  L  I  S  K  H  R  M  A  S  L  S  *  G  R  N  H  F  V  S  S  T  H  V  K  Q  L  R  L  P  N  S  S  L  V  N  H  Y  V  K  S  T  S  R :   I  Q  Q  *  W  E  V  V  Q  T  I  E  G  F  *  *  L  L  G  R  R  S  C  N  *  R  Q  S  L  R  T  I  G  *  Y  G  W  K  D  C  L  Q  Q  R  R  H  L  *  Q  V  I  L  F  I  T  L  E  *  T  I  I  A  R  L  E  L  E  T  A  :  E  E  T  Q  A  D  R  T  K  S  I  I  G  R  R  R  L  M  M  M  F  T  L  I  T  R  F  L  M </second_frame>
            <third_frame>   K  A  N  A  F  F  V  L  Y  H  R  R  G  *  Q  E  H  G  G  G  T  S  S  S  S  R  K  T  F  I  Q  T  T  *  Q  Q  *  *  *  F  G  Q  W  N  L  W  N  F  I  Q  M  G  K  F  W  *  R  M  E  A  S  L  V  C  S  L  *  R  C  T  F  L  L  *  N  Q  R  K  S  F  *  F  R  N  T  E  W  L  H  C  H  R  E  E  I  I  S  F  H  Q  H  M  *  N  N  S  V  F  P  I  P  L  S  *  T  I  T  *  N  P  P  Q   : G  F  N  S  N  G  K  L  F  R  R  S  K  V  F  D  N  Y  W  E  E  E  A  A  I  E  G  R  V  *  G  R  *  V  N  M  V  G  R  I  V  C  S  K  E  G  I  Y  N  K  *  F  C  S  *  P  *  N  E  Q  *  L  Q  G  W  N  S  R  Q  R :   R  K  H  K  Q  I  E  R  R  A  L  *  A  G  G  D  *  *  *  C  S  H  *  *  L  V  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3558" stop="3926"/>
                    <exon start="4275" stop="4482"/>
                    <exon start="4846" stop="4931"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKLMHFLCCITGVADKNTVVVRHHPLGKRSSKLHNNNSNNLDNGICGILYKWANFGRGWRPRWFVLYDGVLFYYKINGKVFNFETQNGFTVIGKKSFRFINTCKTTPSSQFLSRKPLREIHLKDSTVMGSCSDDRRFLIITGKKKLQLKAESKDDRLIWLEGLFAAKKAFITSDFVHNPRMNNNCKVGTRDSGGNTSRSNEEHYRQEETDDDVHTDNSFFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3571" e_stop="3926"/>
            <exon e_start="4275" e_stop="4491"/>
            <exon e_start="4846" e_stop="5029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3571" e_stop="3926" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.970">
            <gDNA_intron_boundary i_start="3927" i_stop="4274" i_length="348"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4275" e_stop="4491" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4492" i_stop="4845" i_length="354"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="4846" e_stop="5029" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3571" stop="3926"/>
              <exon start="4275" stop="4491"/>
              <exon start="4846" stop="5029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTGTGTTGTATCACCGGCGTGGCTGACAAGAACACGGTGGTGGTACGTCATCATCCTCTCGGAAAACGTTCATCCAAACTACATAACAACAATAGTAATAATTTGGACAATGGAATTTGTGGAATTTTATACAAATGGGCAAATTTTGGTAGAGGATGGAGGCCTCGTTGGTTTGTTCTTTATGACGGTGTACTTTTCTACTATAAAATCAACGGAAAAGTTTTTAATTTCGAAACACAGAATGGCTTCACTGTCATAGGGAAGAAATCATTTCGTTTCATCAACACATGTAAAACAACTCCGTCTTCCCAATTCCTCTCTCGTAAACCATTACGTGAAATCCACCTCAAG : GATTCAACAGTAATGGGAAGTTGTTCAGACGATCGAAGGTTTTTGATAATTACTGGGAAGAAGAAGCTGCAATTGAAGGCAGAGTCTAAGGACGATAGGTTAATATGGTTGGAAGGATTGTTTGCAGCAAAGAAGGCATTTATAACAAGTGATTTTGTTCATAACCCTAGAATGAACAATAATTGCAAGGTTGGAACTCGAGACAGCGGTATGAAAG : GAGGAAACACAAGCAGATCGAACGAAGAGCATTATAGGCAGGAGGAGACTGATGATGATGTTCACACTGATAACTCGTTTTTTGATGCTCTAGATTGTCTTTCTACGTGTTCCTTAAAAACCGCCAATTGTTATGATGAAAGCTCATCTTTTGATTCAGATAATGGGGAGGTTCAGCCATCTGA</gDNA_template>
            <first_frame> I  F  C  V  V  S  P  A  W  L  T  R  T  R  W  W  Y  V  I  I  L  S  E  N  V  H  P  N  Y  I  T  T  I  V  I  I  W  T  M  E  F  V  E  F  Y  T  N  G  Q  I  L  V  E  D  G  G  L  V  G  L  F  F  M  T  V  Y  F  S  T  I  K  S  T  E  K  F  L  I  S  K  H  R  M  A  S  L  S  *  G  R  N  H  F  V  S  S  T  H  V  K  Q  L  R  L  P  N  S  S  L  V  N  H  Y  V  K  S  T  S  R :   I  Q  Q  *  W  E  V  V  Q  T  I  E  G  F  *  *  L  L  G  R  R  S  C  N  *  R  Q  S  L  R  T  I  G  *  Y  G  W  K  D  C  L  Q  Q  R  R  H  L  *  Q  V  I  L  F  I  T  L  E  *  T  I  I  A  R  L  E  L  E  T  A  V  *  K  :  E  E  T  Q  A  D  R  T  K  S  I  I  G  R  R  R  L  M  M  M  F  T  L  I  T  R  F  L  M  L  *  I  V  F  L  R  V  P  *  K  P  P  I  V  M  M  K  A  H  L  L  I  Q  I  M  G  R  F  S  H  L  </first_frame>
            <second_frame>  F  F  V  L  Y  H  R  R  G  *  Q  E  H  G  G  G  T  S  S  S  S  R  K  T  F  I  Q  T  T  *  Q  Q  *  *  *  F  G  Q  W  N  L  W  N  F  I  Q  M  G  K  F  W  *  R  M  E  A  S  L  V  C  S  L  *  R  C  T  F  L  L  *  N  Q  R  K  S  F  *  F  R  N  T  E  W  L  H  C  H  R  E  E  I  I  S  F  H  Q  H  M  *  N  N  S  V  F  P  I  P  L  S  *  T  I  T  *  N  P  P  Q   : G  F  N  S  N  G  K  L  F  R  R  S  K  V  F  D  N  Y  W  E  E  E  A  A  I  E  G  R  V  *  G  R  *  V  N  M  V  G  R  I  V  C  S  K  E  G  I  Y  N  K  *  F  C  S  *  P  *  N  E  Q  *  L  Q  G  W  N  S  R  Q  R  Y  E  R :   R  K  H  K  Q  I  E  R  R  A  L  *  A  G  G  D  *  *  *  C  S  H  *  *  L  V  F  *  C  S  R  L  S  F  Y  V  F  L  K  N  R  Q  L  L  *  *  K  L  I  F  *  F  R  *  W  G  G  S  A  I  * </second_frame>
            <third_frame>   F  L  C  C  I  T  G  V  A  D  K  N  T  V  V  V  R  H  H  P  L  G  K  R  S  S  K  L  H  N  N  N  S  N  N  L  D  N  G  I  C  G  I  L  Y  K  W  A  N  F  G  R  G  W  R  P  R  W  F  V  L  Y  D  G  V  L  F  Y  Y  K  I  N  G  K  V  F  N  F  E  T  Q  N  G  F  T  V  I  G  K  K  S  F  R  F  I  N  T  C  K  T  T  P  S  S  Q  F  L  S  R  K  P  L  R  E  I  H  L  K  :  D  S  T  V  M  G  S  C  S  D  D  R  R  F  L  I  I  T  G  K  K  K  L  Q  L  K  A  E  S  K  D  D  R  L  I  W  L  E  G  L  F  A  A  K  K  A  F  I  T  S  D  F  V  H  N  P  R  M  N  N  N  C  K  V  G  T  R  D  S  G  M  K   : G  G  N  T  S  R  S  N  E  E  H  Y  R  Q  E  E  T  D  D  D  V  H  T  D  N  S  F  F  D  A  L  D  C  L  S  T  C  S  L  K  T  A  N  C  Y  D  E  S  S  S  F  D  S  D  N  G  E  V  Q  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3573" stop="3926"/>
                    <exon start="4275" stop="4491"/>
                    <exon start="4846" stop="5027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLCCITGVADKNTVVVRHHPLGKRSSKLHNNNSNNLDNGICGILYKWANFGRGWRPRWFVLYDGVLFYYKINGKVFNFETQNGFTVIGKKSFRFINTCKTTPSSQFLSRKPLREIHLKDSTVMGSCSDDRRFLIITGKKKLQLKAESKDDRLIWLEGLFAAKKAFITSDFVHNPRMNNNCKVGTRDSGMKGGNTSRSNEEHYRQEETDDDVHTDNSFFDALDCLSTCSLKTANCYDESSSFDSDNGEVQPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="9917" PGL_stop="8065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9917" e_stop="9808"/>
            <exon e_start="9174" e_stop="9072"/>
            <exon e_start="8989" e_stop="8904"/>
            <exon e_start="8806" e_stop="8685"/>
            <exon e_start="8403" e_stop="8295"/>
            <exon e_start="8204" e_stop="8065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.717" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9917" e_stop="9808" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.930">
            <gDNA_intron_boundary i_start="9807" i_stop="9175" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9174" e_stop="9072" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.717">
            <gDNA_intron_boundary i_start="9071" i_stop="8990" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8989" e_stop="8904" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8903" i_stop="8807" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8806" e_stop="8685" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8684" i_stop="8404" i_length="281"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8403" e_stop="8295" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8294" i_stop="8205" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.957">
            <gDNA_exon_boundary e_start="8204" e_stop="8065" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9917" stop="9808"/>
              <exon start="9174" stop="9072"/>
              <exon start="8989" stop="8904"/>
              <exon start="8806" stop="8685"/>
              <exon start="8403" stop="8375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9910" stop="9808"/>
              <exon start="9174" stop="9072"/>
              <exon start="8989" stop="8904"/>
              <exon start="8806" stop="8685"/>
              <exon start="8403" stop="8295"/>
              <exon start="8204" stop="8065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9910" stop="9808"/>
              <exon start="9174" stop="9072"/>
              <exon start="8989" stop="8904"/>
              <exon start="8806" stop="8685"/>
              <exon start="8403" stop="8295"/>
              <exon start="8204" stop="8066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9909" stop="9808"/>
              <exon start="9174" stop="9072"/>
              <exon start="8989" stop="8904"/>
              <exon start="8806" stop="8685"/>
              <exon start="8403" stop="8295"/>
              <exon start="8204" stop="8134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAAGTTGACAAATAATTAAAAGATATACTTAATTAATTAATTATTATGGCTGATGATGAACAGAGGAAGCCAACTACCAGAAGAACACCTCTTAGCCAAATAGATGAG : GAAAGGGTATGTATTATGTTGTCTATGGATGAAACTGAAAGTGAAAGTGAAGATGAGGAAATTACTGCCTCTGATGAAGAATTTTTAGACAGTGAAATTCAAG : ATTTCGAGTTAGAATTCTACGACGATGACTATGATGATGATAACATGGAGGAAGATGATGTTGATCCAGATGAATTATCTTATGAG : GAATTAATTGCTTTAGGAGAATTTGTTGGAGTAGAGAACAGAGGATTAACTGAAGAAGAAATCAACAAATCCTTACATTCTTCAACATTTCAATCCAATAATTCCAAGACACTTGTCAACAA : GTGTGTTGTGTGTCAATTGGAATATGAAGAAGGAGAGAAGTTAGTAGCACTTCCATGTGATCATCCCTACCATTTAGATTGTATTAAAAAATGGCTTCAAATAAAGAAG : GTTTGCCCAATATGTAGTGATGAGGTCTCATCTACTAATGTTCCCAAGGAACTATAGCTCTATGTCACTTGTATTATAAACCAAATTATTGTATTGAAATTAATCAAAAGATTTATTGAATGTGTCAAGGGAAATTTGGA</gDNA_template>
            <first_frame> I  K  L  T  N  N  *  K  I  Y  L  I  N  *  L  L  W  L  M  M  N  R  G  S  Q  L  P  E  E  H  L  L  A  K  *  M  R :   K  G  Y  V  L  C  C  L  W  M  K  L  K  V  K  V  K  M  R  K  L  L  P  L  M  K  N  F  *  T  V  K  F  K  :  I  S  S  *  N  S  T  T  M  T  M  M  M  I  T  W  R  K  M  M  L  I  Q  M  N  Y  L  M  R :   N  *  L  L  *  E  N  L  L  E  *  R  T  E  D  *  L  K  K  K  S  T  N  P  Y  I  L  Q  H  F  N  P  I  I  P  R  H  L  S  T   : S  V  L  C  V  N  W  N  M  K  K  E  R  S  *  *  H  F  H  V  I  I  P  T  I  *  I  V  L  K  N  G  F  K  *  R  R :   F  A  Q  Y  V  V  M  R  S  H  L  L  M  F  P  R  N  Y  S  S  M  S  L  V  L  *  T  K  L  L  Y  *  N  *  S  K  D  L  L  N  V  S  R  E  I  W  </first_frame>
            <second_frame>  L  S  *  Q  I  I  K  R  Y  T  *  L  I  N  Y  Y  G  *  *  *  T  E  E  A  N  Y  Q  K  N  T  S  *  P  N  R  *   : G  K  G  M  Y  Y  V  V  Y  G  *  N  *  K  *  K  *  R  *  G  N  Y  C  L  *  *  R  I  F  R  Q  *  N  S  R :   F  R  V  R  I  L  R  R  *  L  *  *  *  *  H  G  G  R  *  C  *  S  R  *  I  I  L  *   : G  I  N  C  F  R  R  I  C  W  S  R  E  Q  R  I  N  *  R  R  N  Q  Q  I  L  T  F  F  N  I  S  I  Q  *  F  Q  D  T  C  Q  Q  :  V  C  C  V  S  I  G  I  *  R  R  R  E  V  S  S  T  S  M  *  S  S  L  P  F  R  L  Y  *  K  M  A  S  N  K  E   : G  L  P  N  M  *  *  *  G  L  I  Y  *  C  S  Q  G  T  I  A  L  C  H  L  Y  Y  K  P  N  Y  C  I  E  I  N  Q  K  I  Y  *  M  C  Q  G  K  F  G </second_frame>
            <third_frame>   *  V  D  K  *  L  K  D  I  L  N  *  L  I  I  M  A  D  D  E  Q  R  K  P  T  T  R  R  T  P  L  S  Q  I  D  E  :  E  R  V  C  I  M  L  S  M  D  E  T  E  S  E  S  E  D  E  E  I  T  A  S  D  E  E  F  L  D  S  E  I  Q   : D  F  E  L  E  F  Y  D  D  D  Y  D  D  D  N  M  E  E  D  D  V  D  P  D  E  L  S  Y  E  :  E  L  I  A  L  G  E  F  V  G  V  E  N  R  G  L  T  E  E  E  I  N  K  S  L  H  S  S  T  F  Q  S  N  N  S  K  T  L  V  N  K :   C  V  V  C  Q  L  E  Y  E  E  G  E  K  L  V  A  L  P  C  D  H  P  Y  H  L  D  C  I  K  K  W  L  Q  I  K  K  :  V  C  P  I  C  S  D  E  V  S  S  T  N  V  P  K  E  L  *  L  Y  V  T  C  I  I  N  Q  I  I  V  L  K  L  I  K  R  F  I  E  C  V  K  G  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9879" stop="9808"/>
                    <exon start="9174" stop="9072"/>
                    <exon start="8989" stop="8904"/>
                    <exon start="8806" stop="8685"/>
                    <exon start="8403" stop="8295"/>
                    <exon start="8204" stop="8148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIIMADDEQRKPTTRRTPLSQIDEERVCIMLSMDETESESEDEEITASDEEFLDSEIQDFELEFYDDDYDDDNMEEDDVDPDELSYEELIALGEFVGVENRGLTEEEINKSLHSSTFQSNNSKTLVNKCVVCQLEYEEGEKLVALPCDHPYHLDCIKKWLQIKKVCPICSDEVSSTNVPKEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37779" PGL_stop="38929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37779" e_stop="38371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="37779" e_stop="38371" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37779" stop="38371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAACCTACATGCATCTTTGTGTGGAGGACTGGAAATGGTGGTGGAAGTCATTCTTTGCTTCTGGTTCAGTCGCGATATACATTTTCCTGTACTCCATCAACTATCTAATATTCGACCTCAAGAGCTTAAGCGGCCCTGTTTCCGCCACCCTTTACCTCGGATACTCCCTCTTCATGGTCTTGGCTATTATGTTTGCAACAGGCACTGTCGGGTTCCTTTCGTCTTTCTGGTTTGTACATTATTTGTTCTCTTCAGTGAAGCTAGATTGAGGAAGCCTCTTGGTCTTGAAGAGCTGCAAGTAAACAAATCAAACATTGAAGAAGCAGTGGGCGGATTTCGAAAGAACATTCTATTTTACTTTTAATGTCATTTTGTAGGGTATTTCGAAGAGAAAAAAACAATAAAACTCCTAAAGTTTTGTTAAATTCTTTAATAGAAAAAGTCATTGCATCTACTGAAGTAAAGTTTCATCAGTTGGTAGGATGAACATCACATTGTTATCATTTCTCTAGTTTCCTATTAATAGTGTTGAATCTGTTATCTTTGAAAGGGCTTTATCATAATATTAGTGATTCTTGTAACTATGTCTA</gDNA_template>
            <first_frame> F  *  P  T  C  I  F  V  W  R  T  G  N  G  G  G  S  H  S  L  L  L  V  Q  S  R  Y  T  F  S  C  T  P  S  T  I  *  Y  S  T  S  R  A  *  A  A  L  F  P  P  P  F  T  S  D  T  P  S  S  W  S  W  L  L  C  L  Q  Q  A  L  S  G  S  F  R  L  S  G  L  Y  I  I  C  S  L  Q  *  S  *  I  E  E  A  S  W  S  *  R  A  A  S  K  Q  I  K  H  *  R  S  S  G  R  I  S  K  E  H  S  I  L  L  L  M  S  F  C  R  V  F  R  R  E  K  N  N  K  T  P  K  V  L  L  N  S  L  I  E  K  V  I  A  S  T  E  V  K  F  H  Q  L  V  G  *  T  S  H  C  Y  H  F  S  S  F  L  L  I  V  L  N  L  L  S  L  K  G  L  Y  H  N  I  S  D  S  C  N  Y  V   </first_frame>
            <second_frame>  S  N  L  H  A  S  L  C  G  G  L  E  M  V  V  E  V  I  L  C  F  W  F  S  R  D  I  H  F  P  V  L  H  Q  L  S  N  I  R  P  Q  E  L  K  R  P  C  F  R  H  P  L  P  R  I  L  P  L  H  G  L  G  Y  Y  V  C  N  R  H  C  R  V  P  F  V  F  L  V  C  T  L  F  V  L  F  S  E  A  R  L  R  K  P  L  G  L  E  E  L  Q  V  N  K  S  N  I  E  E  A  V  G  G  F  R  K  N  I  L  F  Y  F  *  C  H  F  V  G  Y  F  E  E  K  K  T  I  K  L  L  K  F  C  *  I  L  *  *  K  K  S  L  H  L  L  K  *  S  F  I  S  W  *  D  E  H  H  I  V  I  I  S  L  V  S  Y  *  *  C  *  I  C  Y  L  *  K  G  F  I  I  I  L  V  I  L  V  T  M  S  </second_frame>
            <third_frame>   L  T  Y  M  H  L  C  V  E  D  W  K  W  W  W  K  S  F  F  A  S  G  S  V  A  I  Y  I  F  L  Y  S  I  N  Y  L  I  F  D  L  K  S  L  S  G  P  V  S  A  T  L  Y  L  G  Y  S  L  F  M  V  L  A  I  M  F  A  T  G  T  V  G  F  L  S  S  F  W  F  V  H  Y  L  F  S  S  V  K  L  D  *  G  S  L  L  V  L  K  S  C  K  *  T  N  Q  T  L  K  K  Q  W  A  D  F  E  R  T  F  Y  F  T  F  N  V  I  L  *  G  I  S  K  R  K  K  Q  *  N  S  *  S  F  V  K  F  F  N  R  K  S  H  C  I  Y  *  S  K  V  S  S  V  G  R  M  N  I  T  L  L  S  F  L  *  F  P  I  N  S  V  E  S  V  I  F  E  R  A  L  S  *  Y  *  *  F  L  *  L  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37780" stop="38145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNLHASLCGGLEMVVEVILCFWFSRDIHFPVLHQLSNIRPQELKRPCFRHPLPRILPLHGLGYYVCNRHCRVPFVFLVCTLFVLFSEARLRKPLGLEELQVNKSNIEEAVGGFRKNILFYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37827" e_stop="38366"/>
            <exon e_start="38902" e_stop="38929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="37827" e_stop="38366" e_length="540"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38367" i_stop="38901" i_length="535"/>
          </intron>
          <exon e_serial="2" e_score="0.571">
            <gDNA_exon_boundary e_start="38902" e_stop="38929" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37827" stop="38366"/>
              <exon start="38902" stop="38929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249176" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCATTCTTTGCTTCTGGTTCAGTCGCGATATACATTTTCCTGTACTCCATCAACTATCTAATATTCGACCTCAAGAGCTTAAGCGGCCCTGTTTCCGCCACCCTTTACCTCGGATACTCCCTCTTCATGGTCTTGGCTATTATGTTTGCAACAGGCACTGTCGGGTTCCTTTCGTCTTTCTGGTTTGTACATTATTTGTTCTCTTCAGTGAAGCTAGATTGAGGAAGCCTCTTGGTCTTGAAGAGCTGCAAGTAAACAAATCAAACATTGAAGAAGCAGTGGGCGGATTTCGAAAGAACATTCTATTTTACTTTTAATGTCATTTTGTAGGGTATTTCGAAGAGAAAAAAACAATAAAACTCCTAAAGTTTTGTTAAATTCTTTAATAGAAAAAGTCATTGCATCTACTGAAGTAAAGTTTCATCAGTTGGTAGGATGAACATCACATTGTTATCATTTCTCTAGTTTCCTATTAATAGTGTTGAATCTGTTATCTTTGAAAGGGCTTTATCATAATATTAGTGATTCTTGTAACTAT : AAAATCAACCACATATATTTGAAAAAAT</gDNA_template>
            <first_frame> S  H  S  L  L  L  V  Q  S  R  Y  T  F  S  C  T  P  S  T  I  *  Y  S  T  S  R  A  *  A  A  L  F  P  P  P  F  T  S  D  T  P  S  S  W  S  W  L  L  C  L  Q  Q  A  L  S  G  S  F  R  L  S  G  L  Y  I  I  C  S  L  Q  *  S  *  I  E  E  A  S  W  S  *  R  A  A  S  K  Q  I  K  H  *  R  S  S  G  R  I  S  K  E  H  S  I  L  L  L  M  S  F  C  R  V  F  R  R  E  K  N  N  K  T  P  K  V  L  L  N  S  L  I  E  K  V  I  A  S  T  E  V  K  F  H  Q  L  V  G  *  T  S  H  C  Y  H  F  S  S  F  L  L  I  V  L  N  L  L  S  L  K  G  L  Y  H  N  I  S  D  S  C  N  Y  :  K  I  N  H  I  Y  L  K  K  </first_frame>
            <second_frame>  V  I  L  C  F  W  F  S  R  D  I  H  F  P  V  L  H  Q  L  S  N  I  R  P  Q  E  L  K  R  P  C  F  R  H  P  L  P  R  I  L  P  L  H  G  L  G  Y  Y  V  C  N  R  H  C  R  V  P  F  V  F  L  V  C  T  L  F  V  L  F  S  E  A  R  L  R  K  P  L  G  L  E  E  L  Q  V  N  K  S  N  I  E  E  A  V  G  G  F  R  K  N  I  L  F  Y  F  *  C  H  F  V  G  Y  F  E  E  K  K  T  I  K  L  L  K  F  C  *  I  L  *  *  K  K  S  L  H  L  L  K  *  S  F  I  S  W  *  D  E  H  H  I  V  I  I  S  L  V  S  Y  *  *  C  *  I  C  Y  L  *  K  G  F  I  I  I  L  V  I  L  V  T  I :   K  S  T  T  Y  I  *  K  N </second_frame>
            <third_frame>   S  F  F  A  S  G  S  V  A  I  Y  I  F  L  Y  S  I  N  Y  L  I  F  D  L  K  S  L  S  G  P  V  S  A  T  L  Y  L  G  Y  S  L  F  M  V  L  A  I  M  F  A  T  G  T  V  G  F  L  S  S  F  W  F  V  H  Y  L  F  S  S  V  K  L  D  *  G  S  L  L  V  L  K  S  C  K  *  T  N  Q  T  L  K  K  Q  W  A  D  F  E  R  T  F  Y  F  T  F  N  V  I  L  *  G  I  S  K  R  K  K  Q  *  N  S  *  S  F  V  K  F  F  N  R  K  S  H  C  I  Y  *  S  K  V  S  S  V  G  R  M  N  I  T  L  L  S  F  L  *  F  P  I  N  S  V  E  S  V  I  F  E  R  A  L  S  *  Y  *  *  F  L  *  L   : *  N  Q  P  H  I  F  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37828" stop="38145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VILCFWFSRDIHFPVLHQLSNIRPQELKRPCFRHPLPRILPLHGLGYYVCNRHCRVPFVFLVCTLFVLFSEARLRKPLGLEELQVNKSNIEEAVGGFRKNILFYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39246" PGL_stop="48760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39246" e_stop="39470"/>
            <exon e_start="39654" e_stop="39746"/>
            <exon e_start="40309" e_stop="40437"/>
            <exon e_start="40520" e_stop="40654"/>
            <exon e_start="41520" e_stop="41666"/>
            <exon e_start="41888" e_stop="41962"/>
            <exon e_start="42051" e_stop="42144"/>
            <exon e_start="42999" e_stop="43048"/>
            <exon e_start="43129" e_stop="43254"/>
            <exon e_start="44807" e_stop="44842"/>
            <exon e_start="44910" e_stop="44990"/>
            <exon e_start="45092" e_stop="45230"/>
            <exon e_start="45786" e_stop="45865"/>
            <exon e_start="45954" e_stop="46019"/>
            <exon e_start="46813" e_stop="46842"/>
            <exon e_start="46930" e_stop="47039"/>
            <exon e_start="48051" e_stop="48188"/>
            <exon e_start="48304" e_stop="48333"/>
            <exon e_start="48427" e_stop="48760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.315" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39246" e_stop="39470" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39471" i_stop="39653" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39654" e_stop="39746" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.992">
            <gDNA_intron_boundary i_start="39747" i_stop="40308" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40309" e_stop="40437" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.971">
            <gDNA_intron_boundary i_start="40438" i_stop="40519" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40520" e_stop="40654" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="40655" i_stop="41519" i_length="865"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41520" e_stop="41666" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41667" i_stop="41887" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41888" e_stop="41962" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.958" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41963" i_stop="42050" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42051" e_stop="42144" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.969">
            <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42999" e_stop="43048" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43129" e_stop="43254" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="44807" e_stop="44842" e_length="36"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.855">
            <gDNA_intron_boundary i_start="44843" i_stop="44909" i_length="67"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44910" e_stop="44990" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45092" e_stop="45230" e_length="139"/>
          </exon>
          <intron i_serial="12" don_prob="0.315" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45786" e_stop="45865" e_length="80"/>
          </exon>
          <intron i_serial="13" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="45954" e_stop="46019" e_length="66"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="46813" e_stop="46842" e_length="30"/>
          </exon>
          <intron i_serial="15" don_prob="0.868" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46930" e_stop="47039" e_length="110"/>
          </exon>
          <intron i_serial="16" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="47040" i_stop="48050" i_length="1011"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="48051" e_stop="48188" e_length="138"/>
          </exon>
          <intron i_serial="17" don_prob="0.991" acc_prob="0.953">
            <gDNA_intron_boundary i_start="48189" i_stop="48303" i_length="115"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="48304" e_stop="48333" e_length="30"/>
          </exon>
          <intron i_serial="18" don_prob="0.997" acc_prob="0.895">
            <gDNA_intron_boundary i_start="48334" i_stop="48426" i_length="93"/>
          </intron>
          <exon e_serial="19" e_score="0.985">
            <gDNA_exon_boundary e_start="48427" e_stop="48760" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39246" stop="39470"/>
              <exon start="39654" stop="39746"/>
              <exon start="40309" stop="40437"/>
              <exon start="40520" stop="40654"/>
              <exon start="41520" stop="41666"/>
              <exon start="41888" stop="41962"/>
              <exon start="42051" stop="42125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41914" stop="41962"/>
              <exon start="42051" stop="42144"/>
              <exon start="42999" stop="43048"/>
              <exon start="43129" stop="43254"/>
              <exon start="44807" stop="44842"/>
              <exon start="44910" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="45974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41915" stop="41962"/>
              <exon start="42051" stop="42144"/>
              <exon start="42999" stop="43048"/>
              <exon start="43129" stop="43254"/>
              <exon start="44807" stop="44842"/>
              <exon start="44910" stop="44990"/>
              <exon start="45092" stop="45168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42125" stop="42144"/>
              <exon start="42999" stop="43048"/>
              <exon start="43129" stop="43254"/>
              <exon start="44807" stop="44842"/>
              <exon start="44910" stop="44990"/>
              <exon start="45092" stop="45211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42999" stop="43048"/>
              <exon start="43129" stop="43254"/>
              <exon start="44807" stop="44842"/>
              <exon start="44910" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44950" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
              <exon start="48051" stop="48188"/>
              <exon start="48304" stop="48333"/>
              <exon start="48427" stop="48551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44976" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
              <exon start="48051" stop="48135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
              <exon start="48051" stop="48188"/>
              <exon start="48304" stop="48333"/>
              <exon start="48427" stop="48760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48188"/>
              <exon start="48304" stop="48333"/>
              <exon start="48427" stop="48524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277728" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTCAGTCACTATGAATTTTCCTCACATTTCTACTCATAATATTTCTTCAAATCAAACGTTTTCTCCAATCTGTACTAATAATCCTTCTAATTTCTCATCATCGTCGTCTTCATCAATACCAATTTCTTCGAATTCTATCCGTTTATCATCTTCAATTGCTTACTCGGAACAACTAATCGCGTCTCACAATGTCAATCGACGTACTAAGAATCGCAAAATCAAG : GTGATATCTGCAAGAAGTGAGCCTTTAAAGGTGATGATATCAGGTGCCCCTGCATCTGGTAAAGGGACTCAATGTGAATTGATTGTACAAAAG : TTTGGATTGGTGCACATATCAACTGGTGATCTCCTACGAGCTGAATTATCGGCTGGTACAGATATTGGAAATAAAGCTAAGGAGTATATGAACGCTGGTCGCCTGGTTCCTGATGAGATTGTAACAGCT : ATGGTGACAACACGATTATCAAAGGAAGATGCAAAAGAAAAAGGGTGGCTTCTGGATGGGTATCCACGAACGTTGGCTCAAGCAGAAAGTCTGGAAAGGTTGAATATCAGACCAGATATCTACATTGTGCTTGAT : GTTCCTGATGCGATTCTTATTGACAGATGTGTTGGTAGAAGGCTAGATCCTCTCACTGGTAAAATATACCATGTTACTAATTTCCCTCCAGAGACCGAGGACATCAAAGCAAGGCTCATAACTCGTCCTGATGACACAGAGGAAAAG : GTGAAATCACGTCTGCAAATATACAAGCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAG : ATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAG : AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG : GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAG : ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG : GATGTTTATCGAATAGGTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG : GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG : GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT : GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG : GATTTACCTGCTTCAAGTGGTATCATGCAA : ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG : GATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAG : AAATCAAGAGAAAAAAGCAGAGGGATTTTG : GGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGTAAATCAATCTTCTCTTCGTTTTTGAATCCTTCGAAATGCAATCAAGTTCTGGATTTGAGGATCTGATTAATGTGTTCAGTATGAATTTAGTCTCCTGGCACATATCGATCGTAAAGTGTATATACATTTCCTATATATATCTGGTGATTTTGGTAAGTATTTCGACAAAAAGGATCGTAACATACCTTATTCTATGTGTATATATATATTTCTTGTTCATTTTTCTCTATTATG</gDNA_template>
            <first_frame> A  S  V  T  M  N  F  P  H  I  S  T  H  N  I  S  S  N  Q  T  F  S  P  I  C  T  N  N  P  S  N  F  S  S  S  S  S  S  S  I  P  I  S  S  N  S  I  R  L  S  S  S  I  A  Y  S  E  Q  L  I  A  S  H  N  V  N  R  R  T  K  N  R  K  I  K  :  V  I  S  A  R  S  E  P  L  K  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  V  Q  K  :  F  G  L  V  H  I  S  T  G  D  L  L  R  A  E  L  S  A  G  T  D  I  G  N  K  A  K  E  Y  M  N  A  G  R  L  V  P  D  E  I  V  T  A  :  M  V  T  T  R  L  S  K  E  D  A  K  E  K  G  W  L  L  D  G  Y  P  R  T  L  A  Q  A  E  S  L  E  R  L  N  I  R  P  D  I  Y  I  V  L  D  :  V  P  D  A  I  L  I  D  R  C  V  G  R  R  L  D  P  L  T  G  K  I  Y  H  V  T  N  F  P  P  E  T  E  D  I  K  A  R  L  I  T  R  P  D  D  T  E  E  K  :  V  K  S  R  L  Q  I  Y  K  Q  N  A  E  A  I  L  P  V  Y  S  D  I  M  N  K  :  I  D  G  N  R  G  K  D  S  V  F  A  E  I  D  S  L  L  S  R  V  Q  K  E  E  Q  D  A  R  K  S   : E  E  S  A  I  S  S  T  R  A  D  M  A  S  L  S  K  :  D  W  R  G  I  P  T  R  L  N  N  I  P  H  S  R  E  I  R  E  Y  F  Y  T  D  V  L  Q  A  T  Q  R  A  V  N  D  G  K  T  R  L  K  :  I  E  I  N  I  P  E  L  N  P  S  M  :  D  V  Y  R  I  G  T  L  M  E  L  I  R  V  L  A  L  S  F  A  D  D  G  K  R  V  K  :  V  C  V  Q  G  S  M  G  E  G  A  L  A  G  M  P  L  Q  L  A  G  S  R  K  I  L  E  Y  M  D  W  G  D  Y  G  A  L  G  N  F  I  N  I  G  S  I   : G  G  K  E  V  E  K  Q  D  D  V  F  I  L  V  A  P  Q  N  A  V  G  N  C  I  I  D  :  D  M  R  A  M  T  D  A  A  G  N  R  P  I  I  L  V  N  P  K  L  K  :  D  L  P  A  S  S  G  I  M  Q  :  T  M  G  R  D  K  R  L  E  Y  A  A  L  F  E  I  C  Y  Q  F  R  L  L  Y  Y  A  G  T  Q  Y  P  I  M  G  A  L  R :   M  S  Y  P  Y  P  Y  E  L  Y  K  R  V  D  E  S  P  G  K  E  K  Y  I  S  L  A  T  F  A  K  R  P  S  I  D  E  M  N  D  A  F  E  G  K  S  R :   N  Q  E  K  K  A  E  G  F  W :   G  F  L  S  G  I  L  *  A  S  M  E  N  A  Q  T  S  *  Y  L  L  C  N  I  Y  I  *  S  S  K  T  D  G  K  S  I  F  S  S  F  L  N  P  S  K  C  N  Q  V  L  D  L  R  I  *  L  M  C  S  V  *  I  *  S  P  G  T  Y  R  S  *  S  V  Y  T  F  P  I  Y  I  W  *  F  W  *  V  F  R  Q  K  G  S  *  H  T  L  F  Y  V  Y  I  Y  I  S  C  S  F  F  S  I  M </first_frame>
            <second_frame>  L  Q  S  L  *  I  F  L  T  F  L  L  I  I  F  L  Q  I  K  R  F  L  Q  S  V  L  I  I  L  L  I  S  H  H  R  R  L  H  Q  Y  Q  F  L  R  I  L  S  V  Y  H  L  Q  L  L  T  R  N  N  *  S  R  L  T  M  S  I  D  V  L  R  I  A  K  S  R :   *  Y  L  Q  E  V  S  L  *  R  *  *  Y  Q  V  P  L  H  L  V  K  G  L  N  V  N  *  L  Y  K  S :   L  D  W  C  T  Y  Q  L  V  I  S  Y  E  L  N  Y  R  L  V  Q  I  L  E  I  K  L  R  S  I  *  T  L  V  A  W  F  L  M  R  L  *  Q  L :   W  *  Q  H  D  Y  Q  R  K  M  Q  K  K  K  G  G  F  W  M  G  I  H  E  R  W  L  K  Q  K  V  W  K  G  *  I  S  D  Q  I  S  T  L  C  L  M :   F  L  M  R  F  L  L  T  D  V  L  V  E  G  *  I  L  S  L  V  K  Y  T  M  L  L  I  S  L  Q  R  P  R  T  S  K  Q  G  S  *  L  V  L  M  T  Q  R  K  R :   *  N  H  V  C  K  Y  T  S  K  M  L  K  Q  Y  Y  Q  C  T  Q  I  *  *  I  R :   L  M  G  T  A  A  K  I  Q  Y  L  Q  K  L  I  P  Y  C  H  V  C  R  K  R  N  K  M  Q  E  N  Q  :  K  N  Q  Q  F  P  V  L  E  L  I  W  H  L  *  A  R :   I  G  E  E  Y  L  L  D  *  I  I  F  L  T  Q  E  K  L  G  N  I  S  T  L  M  C  F  R  L  L  K  E  L  S  M  M  G  K  L  V  *  R :   *  K  S  I  S  R  S  *  I  L  Q  W :   M  F  I  E  *  V  L  *  W  N  L  S  V  Y  L  L  F  H  L  L  T  M  E  S  V  S  R :   F  V  S  K  G  L  W  G  K  V  H  L  Q  G  C  L  C  S  L  Q  E  V  E  R  Y  *  S  T  W  I  G  V  I  M  A  R  W  E  T  L  S  I  L  V  L  *  :  V  A  R  R  L  K  N  K  M  T  C  S  F  *  W  L  P  R  M  L  S  E  I  A  S  *  M :   I  *  E  L  *  L  M  Q  P  V  T  D  R  L  F  *  S  T  P  N  *  R :   I  Y  L  L  Q  V  V  S  C  K :   Q  W  V  E  I  K  D  W  N  M  L  H  C  L  R  Y  A  I  N  S  G  Y  S  T  M  Q  E  H  N  I  L  L  W  G  H  S   : G  C  R  T  R  I  L  M  S  Y  T  R  E  S  M  N  H  R  G  R  R  N  T  Y  P  W  Q  H  L  Q  R  G  Q  V  L  M  K  *  T  M  P  S  K  E  N  Q   : E  I  K  R  K  K  Q  R  D  F   : G  A  S  *  V  V  Y  Y  K  H  R  W  R  M  H  K  H  H  D  I  F  Y  A  T  S  T  F  D  H  P  K  L  T  V  N  Q  S  S  L  R  F  *  I  L  R  N  A  I  K  F  W  I  *  G  S  D  *  C  V  Q  Y  E  F  S  L  L  A  H  I  D  R  K  V  Y  I  H  F  L  Y  I  S  G  D  F  G  K  Y  F  D  K  K  D  R  N  I  P  Y  S  M  C  I  Y  I  F  L  V  H  F  S  L  L   </second_frame>
            <third_frame>   F  S  H  Y  E  F  S  S  H  F  Y  S  *  Y  F  F  K  S  N  V  F  S  N  L  Y  *  *  S  F  *  F  L  I  I  V  V  F  I  N  T  N  F  F  E  F  Y  P  F  I  I  F  N  C  L  L  G  T  T  N  R  V  S  Q  C  Q  S  T  Y  *  E  S  Q  N  Q   : G  D  I  C  K  K  *  A  F  K  G  D  D  I  R  C  P  C  I  W  *  R  D  S  M  *  I  D  C  T  K   : V  W  I  G  A  H  I  N  W  *  S  P  T  S  *  I  I  G  W  Y  R  Y  W  K  *  S  *  G  V  Y  E  R  W  S  P  G  S  *  *  D  C  N  S   : Y  G  D  N  T  I  I  K  G  R  C  K  R  K  R  V  A  S  G  W  V  S  T  N  V  G  S  S  R  K  S  G  K  V  E  Y  Q  T  R  Y  L  H  C  A  *   : C  S  *  C  D  S  Y  *  Q  M  C  W  *  K  A  R  S  S  H  W  *  N  I  P  C  Y  *  F  P  S  R  D  R  G  H  Q  S  K  A  H  N  S  S  *  *  H  R  G  K   : G  E  I  T  S  A  N  I  Q  A  K  C  *  S  N  I  T  S  V  L  R  Y  N  E  *   : D  *  W  E  P  R  Q  R  F  S  I  C  R  N  *  F  L  I  V  T  C  A  E  R  G  T  R  C  K  K  I  R :   R  I  S  N  F  Q  Y  S  S  *  Y  G  I  F  E  Q   : G  L  E  R  N  T  Y  *  T  E  *  Y  S  S  L  K  R  N  *  G  I  F  L  H  *  C  A  S  G  Y  S  K  S  C  Q  *  W  E  N  S  F  K   : D  R  N  Q  Y  P  G  A  E  S  F  N   : G  C  L  S  N  R  Y  S  N  G  T  Y  P  C  T  C  S  F  I  C  *  R  W  K  A  C  Q   : G  L  C  P  R  V  Y  G  G  R  C  T  C  R  D  A  F  A  A  C  R  K  S  K  D  I  R  V  H  G  L  G  *  L  W  R  V  G  K  L  Y  Q  Y  W  F  Y  R :   W  Q  G  G  *  K  T  R  *  R  V  H  S  S  G  S  P  E  C  C  R  K  L  H  H  R   : *  Y  E  S  Y  D  *  C  S  R  *  P  T  D  Y  S  S  Q  P  Q  T  K   : G  F  T  C  F  K  W  Y  H  A   : N  N  G  *  R  *  K  I  G  I  C  C  I  V  *  D  M  L  S  I  P  A  T  L  L  C  R  N  T  I  S  Y  Y  G  G  T  Q  :  D  V  V  P  V  S  L  *  V  I  Q  E  S  R  *  I  T  G  E  G  E  I  H  I  L  G  N  I  C  K  E  A  K  Y  *  *  N  E  R  C  L  R  R  K  I  K  :  K  S  R  E  K  S  R  G  I  L  :  G  L  L  E  W  Y  T  I  S  I  D  G  E  C  T  N  I  M  I  S  S  M  Q  H  L  H  L  I  I  Q  N  *  R  *  I  N  L  L  F  V  F  E  S  F  E  M  Q  S  S  S  G  F  E  D  L  I  N  V  F  S  M  N  L  V  S  W  H  I  S  I  V  K  C  I  Y  I  S  Y  I  Y  L  V  I  L  V  S  I  S  T  K  R  I  V  T  Y  L  I  L  C  V  Y  I  Y  F  L  F  I  F  L  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39246" stop="39470"/>
                    <exon start="39654" stop="39746"/>
                    <exon start="40309" stop="40437"/>
                    <exon start="40520" stop="40654"/>
                    <exon start="41520" stop="41666"/>
                    <exon start="41888" stop="41962"/>
                    <exon start="42051" stop="42144"/>
                    <exon start="42999" stop="43048"/>
                    <exon start="43129" stop="43254"/>
                    <exon start="44807" stop="44842"/>
                    <exon start="44910" stop="44990"/>
                    <exon start="45092" stop="45230"/>
                    <exon start="45786" stop="45865"/>
                    <exon start="45954" stop="46019"/>
                    <exon start="46813" stop="46842"/>
                    <exon start="46930" stop="47039"/>
                    <exon start="48051" stop="48188"/>
                    <exon start="48304" stop="48333"/>
                    <exon start="48427" stop="48451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1806</number_coding_nucleotides>
                  <number_encoded_amino_acids>602</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASVTMNFPHISTHNISSNQTFSPICTNNPSNFSSSSSSSIPISSNSIRLSSSIAYSEQLIASHNVNRRTKNRKIKVISARSEPLKVMISGAPASGKGTQCELIVQKFGLVHISTGDLLRAELSAGTDIGNKAKEYMNAGRLVPDEIVTAMVTTRLSKEDAKEKGWLLDGYPRTLAQAESLERLNIRPDIYIVLDVPDAILIDRCVGRRLDPLTGKIYHVTNFPPETEDIKARLITRPDDTEEKVKSRLQIYKQNAEAILPVYSDIMNKIDGNRGKDSVFAEIDSLLSRVQKEEQDARKSEESAISSTRADMASLSKDWRGIPTRLNNIPHSREIREYFYTDVLQATQRAVNDGKTRLKIEINIPELNPSMDVYRIGTLMELIRVLALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGSRKILEYMDWGDYGALGNFINIGSIGGKEVEKQDDVFILVAPQNAVGNCIIDDMRAMTDAAGNRPIILVNPKLKDLPASSGIMQTMGRDKRLEYAALFEICYQFRLLYYAGTQYPIMGALRMSYPYPYELYKRVDESPGKEKYISLATFAKRPSIDEMNDAFEGKSRNQEKKAEGFWGFLSGIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48529" stop="48759"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLLFVFESFEMQSSSGFEDLINVFSMNLVSWHISIVKCIYISYIYLVILVSISTKRIVTYLILCVYIYFLFIFLYY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39246" e_stop="39470"/>
            <exon e_start="39654" e_stop="39746"/>
            <exon e_start="40309" e_stop="40437"/>
            <exon e_start="40520" e_stop="40654"/>
            <exon e_start="41520" e_stop="41666"/>
            <exon e_start="41888" e_stop="41962"/>
            <exon e_start="42051" e_stop="42144"/>
            <exon e_start="42999" e_stop="43048"/>
            <exon e_start="43129" e_stop="43254"/>
            <exon e_start="44807" e_stop="44842"/>
            <exon e_start="44926" e_stop="44990"/>
            <exon e_start="45092" e_stop="45230"/>
            <exon e_start="45786" e_stop="45865"/>
            <exon e_start="45954" e_stop="46019"/>
            <exon e_start="46813" e_stop="46842"/>
            <exon e_start="46930" e_stop="47039"/>
            <exon e_start="48051" e_stop="48188"/>
            <exon e_start="48304" e_stop="48333"/>
            <exon e_start="48427" e_stop="48760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.661" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.315" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.895" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39246" e_stop="39470" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39471" i_stop="39653" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39654" e_stop="39746" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.992">
            <gDNA_intron_boundary i_start="39747" i_stop="40308" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40309" e_stop="40437" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.971">
            <gDNA_intron_boundary i_start="40438" i_stop="40519" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40520" e_stop="40654" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="40655" i_stop="41519" i_length="865"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41520" e_stop="41666" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="41667" i_stop="41887" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41888" e_stop="41962" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.958" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41963" i_stop="42050" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42051" e_stop="42144" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.969">
            <gDNA_intron_boundary i_start="42145" i_stop="42998" i_length="854"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42999" e_stop="43048" e_length="50"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="43049" i_stop="43128" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43129" e_stop="43254" e_length="126"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43255" i_stop="44806" i_length="1552"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="44807" e_stop="44842" e_length="36"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.661">
            <gDNA_intron_boundary i_start="44843" i_stop="44925" i_length="83"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44926" e_stop="44990" e_length="65"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="44991" i_stop="45091" i_length="101"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="45092" e_stop="45230" e_length="139"/>
          </exon>
          <intron i_serial="12" don_prob="0.315" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45231" i_stop="45785" i_length="555"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45786" e_stop="45865" e_length="80"/>
          </exon>
          <intron i_serial="13" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45866" i_stop="45953" i_length="88"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="45954" e_stop="46019" e_length="66"/>
          </exon>
          <intron i_serial="14" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="46020" i_stop="46812" i_length="793"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="46813" e_stop="46842" e_length="30"/>
          </exon>
          <intron i_serial="15" don_prob="0.868" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46843" i_stop="46929" i_length="87"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46930" e_stop="47039" e_length="110"/>
          </exon>
          <intron i_serial="16" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="47040" i_stop="48050" i_length="1011"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="48051" e_stop="48188" e_length="138"/>
          </exon>
          <intron i_serial="17" don_prob="0.991" acc_prob="0.953">
            <gDNA_intron_boundary i_start="48189" i_stop="48303" i_length="115"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="48304" e_stop="48333" e_length="30"/>
          </exon>
          <intron i_serial="18" don_prob="0.997" acc_prob="0.895">
            <gDNA_intron_boundary i_start="48334" i_stop="48426" i_length="93"/>
          </intron>
          <exon e_serial="19" e_score="0.985">
            <gDNA_exon_boundary e_start="48427" e_stop="48760" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39246" stop="39470"/>
              <exon start="39654" stop="39746"/>
              <exon start="40309" stop="40437"/>
              <exon start="40520" stop="40654"/>
              <exon start="41520" stop="41666"/>
              <exon start="41888" stop="41962"/>
              <exon start="42051" stop="42125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42115" stop="42144"/>
              <exon start="42999" stop="43048"/>
              <exon start="43129" stop="43254"/>
              <exon start="44807" stop="44842"/>
              <exon start="44926" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="46967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44950" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
              <exon start="48051" stop="48188"/>
              <exon start="48304" stop="48333"/>
              <exon start="48427" stop="48551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44976" stop="44990"/>
              <exon start="45092" stop="45230"/>
              <exon start="45786" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
              <exon start="48051" stop="48135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="45865"/>
              <exon start="45954" stop="46019"/>
              <exon start="46813" stop="46842"/>
              <exon start="46930" stop="47039"/>
              <exon start="48051" stop="48188"/>
              <exon start="48304" stop="48333"/>
              <exon start="48427" stop="48760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48076" stop="48188"/>
              <exon start="48304" stop="48333"/>
              <exon start="48427" stop="48524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277728" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTCAGTCACTATGAATTTTCCTCACATTTCTACTCATAATATTTCTTCAAATCAAACGTTTTCTCCAATCTGTACTAATAATCCTTCTAATTTCTCATCATCGTCGTCTTCATCAATACCAATTTCTTCGAATTCTATCCGTTTATCATCTTCAATTGCTTACTCGGAACAACTAATCGCGTCTCACAATGTCAATCGACGTACTAAGAATCGCAAAATCAAG : GTGATATCTGCAAGAAGTGAGCCTTTAAAGGTGATGATATCAGGTGCCCCTGCATCTGGTAAAGGGACTCAATGTGAATTGATTGTACAAAAG : TTTGGATTGGTGCACATATCAACTGGTGATCTCCTACGAGCTGAATTATCGGCTGGTACAGATATTGGAAATAAAGCTAAGGAGTATATGAACGCTGGTCGCCTGGTTCCTGATGAGATTGTAACAGCT : ATGGTGACAACACGATTATCAAAGGAAGATGCAAAAGAAAAAGGGTGGCTTCTGGATGGGTATCCACGAACGTTGGCTCAAGCAGAAAGTCTGGAAAGGTTGAATATCAGACCAGATATCTACATTGTGCTTGAT : GTTCCTGATGCGATTCTTATTGACAGATGTGTTGGTAGAAGGCTAGATCCTCTCACTGGTAAAATATACCATGTTACTAATTTCCCTCCAGAGACCGAGGACATCAAAGCAAGGCTCATAACTCGTCCTGATGACACAGAGGAAAAG : GTGAAATCACGTCTGCAAATATACAAGCAAAATGCTGAAGCAATATTACCAGTGTACTCAGATATAATGAATAAG : ATTGATGGGAACCGCGGCAAAGATTCAGTATTTGCAGAAATTGATTCCTTATTGTCACGTGTGCAGAAAGAGGAACAAGATGCAAGAAAATCAG : AAGAATCAGCAATTTCCAGTACTCGAGCTGATATGGCATCTTTGAGCAAG : GATTGGAGAGGAATACCTACTAGACTGAATAATATTCCTCACTCAAGAGAAATTAGGGAATATTTCTACACTGATGTGCTTCAGGCTACTCAAAGAGCTGTCAATGATGGGAAAACTCGTTTAAAG : ATAGAAATCAATATCCCGGAGCTGAATCCTTCAATG : GTACTCTAATGGAACTTATCCGTGTACTTGCTCTTTCATTTGCTGACGATGGAAAGCGTGTCAAG : GTTTGTGTCCAAGGGTCTATGGGGGAAGGTGCACTTGCAGGGATGCCTTTGCAGCTTGCAGGAAGTCGAAAGATATTAGAGTACATGGATTGGGGTGATTATGGCGCGTTGGGAAACTTTATCAATATTGGTTCTATAG : GTGGCAAGGAGGTTGAAAAACAAGATGACGTGTTCATTCTAGTGGCTCCCCAGAATGCTGTCGGAAATTGCATCATAGAT : GATATGAGAGCTATGACTGATGCAGCCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAG : GATTTACCTGCTTCAAGTGGTATCATGCAA : ACAATGGGTAGAGATAAAAGATTGGAATATGCTGCATTGTTTGAGATATGCTATCAATTCCGGCTACTCTACTATGCAGGAACACAATATCCTATTATGGGGGCACTCAG : GATGTCGTACCCGTATCCTTATGAGTTATACAAGAGAGTCGATGAATCACCGGGGAAGGAGAAATACATATCCTTGGCAACATTTGCAAAGAGGCCAAGTATTGATGAAATGAACGATGCCTTCGAAGGAAAATCAAG : AAATCAAGAGAAAAAAGCAGAGGGATTTTG : GGGCTTCTTGAGTGGTATACTATAAGCATCGATGGAGAATGCACAAACATCATGATATCTTCTATGCAACATCTACATTTGATCATCCAAAACTGACGGTAAATCAATCTTCTCTTCGTTTTTGAATCCTTCGAAATGCAATCAAGTTCTGGATTTGAGGATCTGATTAATGTGTTCAGTATGAATTTAGTCTCCTGGCACATATCGATCGTAAAGTGTATATACATTTCCTATATATATCTGGTGATTTTGGTAAGTATTTCGACAAAAAGGATCGTAACATACCTTATTCTATGTGTATATATATATTTCTTGTTCATTTTTCTCTATTATG</gDNA_template>
            <first_frame> A  S  V  T  M  N  F  P  H  I  S  T  H  N  I  S  S  N  Q  T  F  S  P  I  C  T  N  N  P  S  N  F  S  S  S  S  S  S  S  I  P  I  S  S  N  S  I  R  L  S  S  S  I  A  Y  S  E  Q  L  I  A  S  H  N  V  N  R  R  T  K  N  R  K  I  K  :  V  I  S  A  R  S  E  P  L  K  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  V  Q  K  :  F  G  L  V  H  I  S  T  G  D  L  L  R  A  E  L  S  A  G  T  D  I  G  N  K  A  K  E  Y  M  N  A  G  R  L  V  P  D  E  I  V  T  A  :  M  V  T  T  R  L  S  K  E  D  A  K  E  K  G  W  L  L  D  G  Y  P  R  T  L  A  Q  A  E  S  L  E  R  L  N  I  R  P  D  I  Y  I  V  L  D  :  V  P  D  A  I  L  I  D  R  C  V  G  R  R  L  D  P  L  T  G  K  I  Y  H  V  T  N  F  P  P  E  T  E  D  I  K  A  R  L  I  T  R  P  D  D  T  E  E  K  :  V  K  S  R  L  Q  I  Y  K  Q  N  A  E  A  I  L  P  V  Y  S  D  I  M  N  K  :  I  D  G  N  R  G  K  D  S  V  F  A  E  I  D  S  L  L  S  R  V  Q  K  E  E  Q  D  A  R  K  S   : E  E  S  A  I  S  S  T  R  A  D  M  A  S  L  S  K  :  D  W  R  G  I  P  T  R  L  N  N  I  P  H  S  R  E  I  R  E  Y  F  Y  T  D  V  L  Q  A  T  Q  R  A  V  N  D  G  K  T  R  L  K  :  I  E  I  N  I  P  E  L  N  P  S  M  :  V  L  *  W  N  L  S  V  Y  L  L  F  H  L  L  T  M  E  S  V  S  R :   F  V  S  K  G  L  W  G  K  V  H  L  Q  G  C  L  C  S  L  Q  E  V  E  R  Y  *  S  T  W  I  G  V  I  M  A  R  W  E  T  L  S  I  L  V  L  *  :  V  A  R  R  L  K  N  K  M  T  C  S  F  *  W  L  P  R  M  L  S  E  I  A  S  *  M :   I  *  E  L  *  L  M  Q  P  V  T  D  R  L  F  *  S  T  P  N  *  R :   I  Y  L  L  Q  V  V  S  C  K :   Q  W  V  E  I  K  D  W  N  M  L  H  C  L  R  Y  A  I  N  S  G  Y  S  T  M  Q  E  H  N  I  L  L  W  G  H  S   : G  C  R  T  R  I  L  M  S  Y  T  R  E  S  M  N  H  R  G  R  R  N  T  Y  P  W  Q  H  L  Q  R  G  Q  V  L  M  K  *  T  M  P  S  K  E  N  Q   : E  I  K  R  K  K  Q  R  D  F   : G  A  S  *  V  V  Y  Y  K  H  R  W  R  M  H  K  H  H  D  I  F  Y  A  T  S  T  F  D  H  P  K  L  T  V  N  Q  S  S  L  R  F  *  I  L  R  N  A  I  K  F  W  I  *  G  S  D  *  C  V  Q  Y  E  F  S  L  L  A  H  I  D  R  K  V  Y  I  H  F  L  Y  I  S  G  D  F  G  K  Y  F  D  K  K  D  R  N  I  P  Y  S  M  C  I  Y  I  F  L  V  H  F  S  L  L   </first_frame>
            <second_frame>  L  Q  S  L  *  I  F  L  T  F  L  L  I  I  F  L  Q  I  K  R  F  L  Q  S  V  L  I  I  L  L  I  S  H  H  R  R  L  H  Q  Y  Q  F  L  R  I  L  S  V  Y  H  L  Q  L  L  T  R  N  N  *  S  R  L  T  M  S  I  D  V  L  R  I  A  K  S  R :   *  Y  L  Q  E  V  S  L  *  R  *  *  Y  Q  V  P  L  H  L  V  K  G  L  N  V  N  *  L  Y  K  S :   L  D  W  C  T  Y  Q  L  V  I  S  Y  E  L  N  Y  R  L  V  Q  I  L  E  I  K  L  R  S  I  *  T  L  V  A  W  F  L  M  R  L  *  Q  L :   W  *  Q  H  D  Y  Q  R  K  M  Q  K  K  K  G  G  F  W  M  G  I  H  E  R  W  L  K  Q  K  V  W  K  G  *  I  S  D  Q  I  S  T  L  C  L  M :   F  L  M  R  F  L  L  T  D  V  L  V  E  G  *  I  L  S  L  V  K  Y  T  M  L  L  I  S  L  Q  R  P  R  T  S  K  Q  G  S  *  L  V  L  M  T  Q  R  K  R :   *  N  H  V  C  K  Y  T  S  K  M  L  K  Q  Y  Y  Q  C  T  Q  I  *  *  I  R :   L  M  G  T  A  A  K  I  Q  Y  L  Q  K  L  I  P  Y  C  H  V  C  R  K  R  N  K  M  Q  E  N  Q  :  K  N  Q  Q  F  P  V  L  E  L  I  W  H  L  *  A  R :   I  G  E  E  Y  L  L  D  *  I  I  F  L  T  Q  E  K  L  G  N  I  S  T  L  M  C  F  R  L  L  K  E  L  S  M  M  G  K  L  V  *  R :   *  K  S  I  S  R  S  *  I  L  Q  W :   Y  S  N  G  T  Y  P  C  T  C  S  F  I  C  *  R  W  K  A  C  Q   : G  L  C  P  R  V  Y  G  G  R  C  T  C  R  D  A  F  A  A  C  R  K  S  K  D  I  R  V  H  G  L  G  *  L  W  R  V  G  K  L  Y  Q  Y  W  F  Y  R :   W  Q  G  G  *  K  T  R  *  R  V  H  S  S  G  S  P  E  C  C  R  K  L  H  H  R   : *  Y  E  S  Y  D  *  C  S  R  *  P  T  D  Y  S  S  Q  P  Q  T  K   : G  F  T  C  F  K  W  Y  H  A   : N  N  G  *  R  *  K  I  G  I  C  C  I  V  *  D  M  L  S  I  P  A  T  L  L  C  R  N  T  I  S  Y  Y  G  G  T  Q  :  D  V  V  P  V  S  L  *  V  I  Q  E  S  R  *  I  T  G  E  G  E  I  H  I  L  G  N  I  C  K  E  A  K  Y  *  *  N  E  R  C  L  R  R  K  I  K  :  K  S  R  E  K  S  R  G  I  L  :  G  L  L  E  W  Y  T  I  S  I  D  G  E  C  T  N  I  M  I  S  S  M  Q  H  L  H  L  I  I  Q  N  *  R  *  I  N  L  L  F  V  F  E  S  F  E  M  Q  S  S  S  G  F  E  D  L  I  N  V  F  S  M  N  L  V  S  W  H  I  S  I  V  K  C  I  Y  I  S  Y  I  Y  L  V  I  L  V  S  I  S  T  K  R  I  V  T  Y  L  I  L  C  V  Y  I  Y  F  L  F  I  F  L  Y  Y  </second_frame>
            <third_frame>   F  S  H  Y  E  F  S  S  H  F  Y  S  *  Y  F  F  K  S  N  V  F  S  N  L  Y  *  *  S  F  *  F  L  I  I  V  V  F  I  N  T  N  F  F  E  F  Y  P  F  I  I  F  N  C  L  L  G  T  T  N  R  V  S  Q  C  Q  S  T  Y  *  E  S  Q  N  Q   : G  D  I  C  K  K  *  A  F  K  G  D  D  I  R  C  P  C  I  W  *  R  D  S  M  *  I  D  C  T  K   : V  W  I  G  A  H  I  N  W  *  S  P  T  S  *  I  I  G  W  Y  R  Y  W  K  *  S  *  G  V  Y  E  R  W  S  P  G  S  *  *  D  C  N  S   : Y  G  D  N  T  I  I  K  G  R  C  K  R  K  R  V  A  S  G  W  V  S  T  N  V  G  S  S  R  K  S  G  K  V  E  Y  Q  T  R  Y  L  H  C  A  *   : C  S  *  C  D  S  Y  *  Q  M  C  W  *  K  A  R  S  S  H  W  *  N  I  P  C  Y  *  F  P  S  R  D  R  G  H  Q  S  K  A  H  N  S  S  *  *  H  R  G  K   : G  E  I  T  S  A  N  I  Q  A  K  C  *  S  N  I  T  S  V  L  R  Y  N  E  *   : D  *  W  E  P  R  Q  R  F  S  I  C  R  N  *  F  L  I  V  T  C  A  E  R  G  T  R  C  K  K  I  R :   R  I  S  N  F  Q  Y  S  S  *  Y  G  I  F  E  Q   : G  L  E  R  N  T  Y  *  T  E  *  Y  S  S  L  K  R  N  *  G  I  F  L  H  *  C  A  S  G  Y  S  K  S  C  Q  *  W  E  N  S  F  K   : D  R  N  Q  Y  P  G  A  E  S  F  N   : G  T  L  M  E  L  I  R  V  L  A  L  S  F  A  D  D  G  K  R  V  K  :  V  C  V  Q  G  S  M  G  E  G  A  L  A  G  M  P  L  Q  L  A  G  S  R  K  I  L  E  Y  M  D  W  G  D  Y  G  A  L  G  N  F  I  N  I  G  S  I   : G  G  K  E  V  E  K  Q  D  D  V  F  I  L  V  A  P  Q  N  A  V  G  N  C  I  I  D  :  D  M  R  A  M  T  D  A  A  G  N  R  P  I  I  L  V  N  P  K  L  K  :  D  L  P  A  S  S  G  I  M  Q  :  T  M  G  R  D  K  R  L  E  Y  A  A  L  F  E  I  C  Y  Q  F  R  L  L  Y  Y  A  G  T  Q  Y  P  I  M  G  A  L  R :   M  S  Y  P  Y  P  Y  E  L  Y  K  R  V  D  E  S  P  G  K  E  K  Y  I  S  L  A  T  F  A  K  R  P  S  I  D  E  M  N  D  A  F  E  G  K  S  R :   N  Q  E  K  K  A  E  G  F  W :   G  F  L  S  G  I  L  *  A  S  M  E  N  A  Q  T  S  *  Y  L  L  C  N  I  Y  I  *  S  S  K  T  D  G  K  S  I  F  S  S  F  L  N  P  S  K  C  N  Q  V  L  D  L  R  I  *  L  M  C  S  V  *  I  *  S  P  G  T  Y  R  S  *  S  V  Y  T  F  P  I  Y  I  W  *  F  W  *  V  F  R  Q  K  G  S  *  H  T  L  F  Y  V  Y  I  Y  I  S  C  S  F  F  S  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39246" stop="39470"/>
                    <exon start="39654" stop="39746"/>
                    <exon start="40309" stop="40437"/>
                    <exon start="40520" stop="40654"/>
                    <exon start="41520" stop="41666"/>
                    <exon start="41888" stop="41962"/>
                    <exon start="42051" stop="42144"/>
                    <exon start="42999" stop="43048"/>
                    <exon start="43129" stop="43254"/>
                    <exon start="44807" stop="44842"/>
                    <exon start="44926" stop="44934"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASVTMNFPHISTHNISSNQTFSPICTNNPSNFSSSSSSSIPISSNSIRLSSSIAYSEQLIASHNVNRRTKNRKIKVISARSEPLKVMISGAPASGKGTQCELIVQKFGLVHISTGDLLRAELSAGTDIGNKAKEYMNAGRLVPDEIVTAMVTTRLSKEDAKEKGWLLDGYPRTLAQAESLERLNIRPDIYIVLDVPDAILIDRCVGRRLDPLTGKIYHVTNFPPETEDIKARLITRPDDTEEKVKSRLQIYKQNAEAILPVYSDIMNKIDGNRGKDSVFAEIDSLLSRVQKEEQDARKSEESAISSTRADMASLSKDWRGIPTRLNNIPHSREIREYFYTDVLQATQRAVNDGKTRLKIEINIPELNPSMVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46018" stop="46019"/>
                    <exon start="46813" stop="46842"/>
                    <exon start="46930" stop="47039"/>
                    <exon start="48051" stop="48163"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIYLLQVVSCKQWVEIKDWNMLHCLRYAINSGYSTMQEHNILLWGHSGCRTRILMSYTRESMNHRGRRNTYPWQHLQRGQVLMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48529" stop="48759"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INLLFVFESFEMQSSSGFEDLINVFSMNLVSWHISIVKCIYISYIYLVILVSISTKRIVTYLILCVYIYFLFIFLYY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="45979" e_stop="46734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="45979" e_stop="46734" e_length="756"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45979" stop="46734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698485" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGTAACCGACCGATTATTCTAGTCAACCCCAAACTAAAGGTTTGGATCTTAATACCTCGTTAATGAATGTGACTTCCTTTTTAACTAAAAAACAGCTCATGGCTTACCATGAATCTCAATCGCAGCAGCAAAAGTTGTTTGAATGATAAATTAGTCTCACGTCCCTTCCAATACTTAATATCACCTACCAAAGTGAAGCTTGTGGTTGATGCATATACAACAATGCTCATTTTAAATTTCTTTTTGTAGCTTATCGTAAAATACATTTTGATTCTGGCGGTGTCCAAGAACTTAAATGCAACGTCTCATACCCAAGTCCATCTGTCCATGTAACCTAGAGAGTACTGTTTGACATGTAGATATGCAAATGAGACGAATTCATTAATCTACTGAAAGTGTTTATTCTAGAAATTTTTTAAAATTTGAAAACTGTGCTTAAGCCTTCTAATCTGGATAAGGGTGTTTTACCATCTATGTTACTCTGACTTTTCATAAATGTCAGCGGGTGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGAGTATCCGTGTGAGTGCGGCATCGAAAGTAGAGAGTCACACAACTTACTTTACCATTATACACTAAAATATTGATTACGAACTCAAACCATCCATGTATTATCCATTTATTCGTCTTGCATTTATACTGATTTTTCTCTCAGAGAAAACAATATTTTTTAGTTGCACTAGAAAACCCGTTAAATAAATTTTGCTTACACTTCCGGTGTTCAT</gDNA_template>
            <first_frame> P  V  T  D  R  L  F  *  S  T  P  N  *  R  F  G  S  *  Y  L  V  N  E  C  D  F  L  F  N  *  K  T  A  H  G  L  P  *  I  S  I  A  A  A  K  V  V  *  M  I  N  *  S  H  V  P  S  N  T  *  Y  H  L  P  K  *  S  L  W  L  M  H  I  Q  Q  C  S  F  *  I  S  F  C  S  L  S  *  N  T  F  *  F  W  R  C  P  R  T  *  M  Q  R  L  I  P  K  S  I  C  P  C  N  L  E  S  T  V  *  H  V  D  M  Q  M  R  R  I  H  *  S  T  E  S  V  Y  S  R  N  F  L  K  F  E  N  C  A  *  A  F  *  S  G  *  G  C  F  T  I  Y  V  T  L  T  F  H  K  C  Q  R  V  H  V  E  F  S  K  S  S  V  F  L  E  Y  P  C  E  C  G  I  E  S  R  E  S  H  N  L  L  Y  H  Y  T  L  K  Y  *  L  R  T  Q  T  I  H  V  L  S  I  Y  S  S  C  I  Y  T  D  F  S  L  R  E  N  N  I  F  *  L  H  *  K  T  R  *  I  N  F  A  Y  T  S  G  V  H </first_frame>
            <second_frame>  R  *  P  T  D  Y  S  S  Q  P  Q  T  K  G  L  D  L  N  T  S  L  M  N  V  T  S  F  L  T  K  K  Q  L  M  A  Y  H  E  S  Q  S  Q  Q  Q  K  L  F  E  *  *  I  S  L  T  S  L  P  I  L  N  I  T  Y  Q  S  E  A  C  G  *  C  I  Y  N  N  A  H  F  K  F  L  F  V  A  Y  R  K  I  H  F  D  S  G  G  V  Q  E  L  K  C  N  V  S  Y  P  S  P  S  V  H  V  T  *  R  V  L  F  D  M  *  I  C  K  *  D  E  F  I  N  L  L  K  V  F  I  L  E  I  F  *  N  L  K  T  V  L  K  P  S  N  L  D  K  G  V  L  P  S  M  L  L  *  L  F  I  N  V  S  G  C  M  S  N  S  P  K  V  V  Y  F  W  S  I  R  V  S  A  A  S  K  V  E  S  H  T  T  Y  F  T  I  I  H  *  N  I  D  Y  E  L  K  P  S  M  Y  Y  P  F  I  R  L  A  F  I  L  I  F  L  S  E  K  T  I  F  F  S  C  T  R  K  P  V  K  *  I  L  L  T  L  P  V  F   </second_frame>
            <third_frame>   G  N  R  P  I  I  L  V  N  P  K  L  K  V  W  I  L  I  P  R  *  *  M  *  L  P  F  *  L  K  N  S  S  W  L  T  M  N  L  N  R  S  S  K  S  C  L  N  D  K  L  V  S  R  P  F  Q  Y  L  I  S  P  T  K  V  K  L  V  V  D  A  Y  T  T  M  L  I  L  N  F  F  L  *  L  I  V  K  Y  I  L  I  L  A  V  S  K  N  L  N  A  T  S  H  T  Q  V  H  L  S  M  *  P  R  E  Y  C  L  T  C  R  Y  A  N  E  T  N  S  L  I  Y  *  K  C  L  F  *  K  F  F  K  I  *  K  L  C  L  S  L  L  I  W  I  R  V  F  Y  H  L  C  Y  S  D  F  S  *  M  S  A  G  A  C  R  I  L  Q  K  *  C  I  F  G  V  S  V  *  V  R  H  R  K  *  R  V  T  Q  L  T  L  P  L  Y  T  K  I  L  I  T  N  S  N  H  P  C  I  I  H  L  F  V  L  H  L  Y  *  F  F  S  Q  R  K  Q  Y  F  L  V  A  L  E  N  P  L  N  K  F  C  L  H  F  R  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0215O16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="59275" PGL_stop="56644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59275" e_stop="59209"/>
            <exon e_start="59133" e_stop="58824"/>
            <exon e_start="58544" e_stop="58030"/>
            <exon e_start="57784" e_stop="57611"/>
            <exon e_start="57496" e_stop="57314"/>
            <exon e_start="57219" e_stop="56644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.739" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.270" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59275" e_stop="59209" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="59208" i_stop="59134" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59133" e_stop="58824" e_length="310"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.739">
            <gDNA_intron_boundary i_start="58823" i_stop="58545" i_length="279"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="58544" e_stop="58030" e_length="515"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58029" i_stop="57785" i_length="245"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57784" e_stop="57611" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.270" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57610" i_stop="57497" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57496" e_stop="57314" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.978">
            <gDNA_intron_boundary i_start="57313" i_stop="57220" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57219" e_stop="56644" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59275" stop="59209"/>
              <exon start="59133" stop="58824"/>
              <exon start="58544" stop="58191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58215" stop="58030"/>
              <exon start="57784" stop="57611"/>
              <exon start="57496" stop="57324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57474" stop="57314"/>
              <exon start="57219" stop="56644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333834" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGCTCATGAAATCATCGACAACTTTGCTAACCGCGGTCTTCGTTCTTTGGGTGTTGCAAGACAG : ACTGTGCCAGAGAAAGATAAGGAAAGTGCTGGTTCACCTTGGGAATTCGTCGGGCTTTTACCTCTCTTTGATCCACCAAGGCACGACAGTGCAGAGACAATTCGCAAAGCTCTCGAGCTTGGTGTTAATGTTAAGATGATCACTGGTGACCAGCTTGCTATCGGTAAGGAAACTGGTCGTAGGCTCGGTATGGGAACCAACATGTATCCATCTTCAGCTCTTCTTGGTGATCACAAGGATGAGTCCATTGCTCAAATTCCTGTTGAGGAGCTTATTGAGCAGGCTGATGGCTTTGCTGGAGTCTTCCCAG : AACACAAGTACGAGATCGTGAAGAAGCTGCAAGAAAGAAAGCACATTTGTGGTATGACTGGAGATGGTGTGAATGATGCACCAGCACTGAAGAAGGCAGACATTGGTATTGCAGTTGCTGATTCAACAGATGCAGCTCGTGGTGCATCTGATATCGTTTTGACCCAACCAGGTCTTGGTGTCATTATTAGTGCCGTTTTGACAAGCAGAGCCATTTTCCAGAGGATGAAGAACTATACTATCTATGCAGTCTCAATCACAATCCGTGTCGTGATGGGATTCATGCTCATTGCACTCATCTGGGAATTCGACTTCCCTCCCTTCATGGTCCTCATCATTGCCATCCTCAACGATGGAACCATCATGACCATCTCTAAGGACAGGGTCAAGCCATCTCCTTTGCCCGACTCATGGAAGCTCAACGAGATCTTTGCCACTGGGATTGTCCTCGGAACCTATCAAGCTCTCATGACTGTTCTGTTCTTCTATCTTGCAGCCTCTACTGATTTCTTTACA : GAGAAGTTCGGTGTTAGATCAATCAGGGAGAACGAACACGGTCTTACAGCTGCTGTATACCTTCAAGTGAGTATTATCAGTCAGGCTCTCATCTTTGTGACAAGATCAAGAAGCTGGTCATTTGTTGAACGCCCCGGTGTTTTTCTTGTGGTTGCGTTCTTTCTAGCCCAATTC : GTGGCTACACTTATCACCGTCTACGCGAACTGGGACTTTGCTAGGATCCATGGAATTGGATGGGGATGGGCAGCAATCATATGGATCTACACAATCATTACATATCTCCCTCTTGATGTTCTTAAATTCATTAGTCGTTACGCGTTGAGTGGTGATGCCTGGGATTCAATGATCCAGAATAAG : ACCGCCTTCACAACAAAGAAGGACTATGGAAAAGGCGAAAGAGAAGCACAATGGGCCGTGGCTCAACGTACACTTCATGGTCTCCAGACTGCAGAAAGCGATGGCTTGTTCCACGACAAGAACTACAGGGAATTGAACGAGATTGCTGAACAAGCTAAACGTCGTGCTGAAGTTGCCAAATATACACACGAGTAATTACTCGACATTTTCAAGGACCATGTTGCTGAGCTTGAGGAATTTTACACTCTAAAAGGAACATGCTGAAATGATCTAATAATAAAGCAATATTGTCTAAAGATTATGCAATGATCACATTTTTGGTGAAGGGCATTTTTGCAGCTAATTTTTGTTTTCTTCAAAAAACAACAACAAGTGTATGTACATATGATGTTATCAATGTTGGATGAGTTCCTAAATTGGTGAACCACAAAGGCTGCATATTAAAAAAAAAGTGAGTACTAGTAGCTATATACATAAACAATAGCTATAATATTATCATTTATGTTTTTTTTTCTGTAAATATTTATTTATTATTAATTCATATATTTAGTTTTCCTAAAATACGTCCAAAAGGAA</gDNA_template>
            <first_frame> E  S  S  *  N  H  R  Q  L  C  *  P  R  S  S  F  F  G  C  C  K  T   : D  C  A  R  E  R  *  G  K  C  W  F  T  L  G  I  R  R  A  F  T  S  L  *  S  T  K  A  R  Q  C  R  D  N  S  Q  S  S  R  A  W  C  *  C  *  D  D  H  W  *  P  A  C  Y  R  *  G  N  W  S  *  A  R  Y  G  N  Q  H  V  S  I  F  S  S  S  W  *  S  Q  G  *  V  H  C  S  N  S  C  *  G  A  Y  *  A  G  *  W  L  C  W  S  L  P  R :   T  Q  V  R  D  R  E  E  A  A  R  K  K  A  H  L  W  Y  D  W  R  W  C  E  *  C  T  S  T  E  E  G  R  H  W  Y  C  S  C  *  F  N  R  C  S  S  W  C  I  *  Y  R  F  D  P  T  R  S  W  C  H  Y  *  C  R  F  D  K  Q  S  H  F  P  E  D  E  E  L  Y  Y  L  C  S  L  N  H  N  P  C  R  D  G  I  H  A  H  C  T  H  L  G  I  R  L  P  S  L  H  G  P  H  H  C  H  P  Q  R  W  N  H  H  D  H  L  *  G  Q  G  Q  A  I  S  F  A  R  L  M  E  A  Q  R  D  L  C  H  W  D  C  P  R  N  L  S  S  S  H  D  C  S  V  L  L  S  C  S  L  Y  *  F  L  Y   : R  E  V  R  C  *  I  N  Q  G  E  R  T  R  S  Y  S  C  C  I  P  S  S  E  Y  Y  Q  S  G  S  H  L  C  D  K  I  K  K  L  V  I  C  *  T  P  R  C  F  S  C  G  C  V  L  S  S  P  I   : R  G  Y  T  Y  H  R  L  R  E  L  G  L  C  *  D  P  W  N  W  M  G  M  G  S  N  H  M  D  L  H  N  H  Y  I  S  P  S  *  C  S  *  I  H  *  S  L  R  V  E  W  *  C  L  G  F  N  D  P  E  *   : D  R  L  H  N  K  E  G  L  W  K  R  R  K  R  S  T  M  G  R  G  S  T  Y  T  S  W  S  P  D  C  R  K  R  W  L  V  P  R  Q  E  L  Q  G  I  E  R  D  C  *  T  S  *  T  S  C  *  S  C  Q  I  Y  T  R  V  I  T  R  H  F  Q  G  P  C  C  *  A  *  G  I  L  H  S  K  R  N  M  L  K  *  S  N  N  K  A  I  L  S  K  D  Y  A  M  I  T  F  L  V  K  G  I  F  A  A  N  F  C  F  L  Q  K  T  T  T  S  V  C  T  Y  D  V  I  N  V  G  *  V  P  K  L  V  N  H  K  G  C  I  L  K  K  K  *  V  L  V  A  I  Y  I  N  N  S  Y  N  I  I  I  Y  V  F  F  S  V  N  I  Y  L  L  L  I  H  I  F  S  F  P  K  I  R  P  K  G  </first_frame>
            <second_frame>  K  A  H  E  I  I  D  N  F  A  N  R  G  L  R  S  L  G  V  A  R  Q  :  T  V  P  E  K  D  K  E  S  A  G  S  P  W  E  F  V  G  L  L  P  L  F  D  P  P  R  H  D  S  A  E  T  I  R  K  A  L  E  L  G  V  N  V  K  M  I  T  G  D  Q  L  A  I  G  K  E  T  G  R  R  L  G  M  G  T  N  M  Y  P  S  S  A  L  L  G  D  H  K  D  E  S  I  A  Q  I  P  V  E  E  L  I  E  Q  A  D  G  F  A  G  V  F  P   : E  H  K  Y  E  I  V  K  K  L  Q  E  R  K  H  I  C  G  M  T  G  D  G  V  N  D  A  P  A  L  K  K  A  D  I  G  I  A  V  A  D  S  T  D  A  A  R  G  A  S  D  I  V  L  T  Q  P  G  L  G  V  I  I  S  A  V  L  T  S  R  A  I  F  Q  R  M  K  N  Y  T  I  Y  A  V  S  I  T  I  R  V  V  M  G  F  M  L  I  A  L  I  W  E  F  D  F  P  P  F  M  V  L  I  I  A  I  L  N  D  G  T  I  M  T  I  S  K  D  R  V  K  P  S  P  L  P  D  S  W  K  L  N  E  I  F  A  T  G  I  V  L  G  T  Y  Q  A  L  M  T  V  L  F  F  Y  L  A  A  S  T  D  F  F  T  :  E  K  F  G  V  R  S  I  R  E  N  E  H  G  L  T  A  A  V  Y  L  Q  V  S  I  I  S  Q  A  L  I  F  V  T  R  S  R  S  W  S  F  V  E  R  P  G  V  F  L  V  V  A  F  F  L  A  Q  F  :  V  A  T  L  I  T  V  Y  A  N  W  D  F  A  R  I  H  G  I  G  W  G  W  A  A  I  I  W  I  Y  T  I  I  T  Y  L  P  L  D  V  L  K  F  I  S  R  Y  A  L  S  G  D  A  W  D  S  M  I  Q  N  K  :  T  A  F  T  T  K  K  D  Y  G  K  G  E  R  E  A  Q  W  A  V  A  Q  R  T  L  H  G  L  Q  T  A  E  S  D  G  L  F  H  D  K  N  Y  R  E  L  N  E  I  A  E  Q  A  K  R  R  A  E  V  A  K  Y  T  H  E  *  L  L  D  I  F  K  D  H  V  A  E  L  E  E  F  Y  T  L  K  G  T  C  *  N  D  L  I  I  K  Q  Y  C  L  K  I  M  Q  *  S  H  F  W  *  R  A  F  L  Q  L  I  F  V  F  F  K  K  Q  Q  Q  V  Y  V  H  M  M  L  S  M  L  D  E  F  L  N  W  *  T  T  K  A  A  Y  *  K  K  S  E  Y  *  *  L  Y  T  *  T  I  A  I  I  L  S  F  M  F  F  F  L  *  I  F  I  Y  Y  *  F  I  Y  L  V  F  L  K  Y  V  Q  K  E </second_frame>
            <third_frame>   K  L  M  K  S  S  T  T  L  L  T  A  V  F  V  L  W  V  L  Q  D  R :   L  C  Q  R  K  I  R  K  V  L  V  H  L  G  N  S  S  G  F  Y  L  S  L  I  H  Q  G  T  T  V  Q  R  Q  F  A  K  L  S  S  L  V  L  M  L  R  *  S  L  V  T  S  L  L  S  V  R  K  L  V  V  G  S  V  W  E  P  T  C  I  H  L  Q  L  F  L  V  I  T  R  M  S  P  L  L  K  F  L  L  R  S  L  L  S  R  L  M  A  L  L  E  S  S  Q  :  N  T  S  T  R  S  *  R  S  C  K  K  E  S  T  F  V  V  *  L  E  M  V  *  M  M  H  Q  H  *  R  R  Q  T  L  V  L  Q  L  L  I  Q  Q  M  Q  L  V  V  H  L  I  S  F  *  P  N  Q  V  L  V  S  L  L  V  P  F  *  Q  A  E  P  F  S  R  G  *  R  T  I  L  S  M  Q  S  Q  S  Q  S  V  S  *  W  D  S  C  S  L  H  S  S  G  N  S  T  S  L  P  S  W  S  S  S  L  P  S  S  T  M  E  P  S  *  P  S  L  R  T  G  S  S  H  L  L  C  P  T  H  G  S  S  T  R  S  L  P  L  G  L  S  S  E  P  I  K  L  S  *  L  F  C  S  S  I  L  Q  P  L  L  I  S  L  Q :   R  S  S  V  L  D  Q  S  G  R  T  N  T  V  L  Q  L  L  Y  T  F  K  *  V  L  S  V  R  L  S  S  L  *  Q  D  Q  E  A  G  H  L  L  N  A  P  V  F  F  L  W  L  R  S  F  *  P  N  S :   W  L  H  L  S  P  S  T  R  T  G  T  L  L  G  S  M  E  L  D  G  D  G  Q  Q  S  Y  G  S  T  Q  S  L  H  I  S  L  L  M  F  L  N  S  L  V  V  T  R  *  V  V  M  P  G  I  Q  *  S  R  I  R :   P  P  S  Q  Q  R  R  T  M  E  K  A  K  E  K  H  N  G  P  W  L  N  V  H  F  M  V  S  R  L  Q  K  A  M  A  C  S  T  T  R  T  T  G  N  *  T  R  L  L  N  K  L  N  V  V  L  K  L  P  N  I  H  T  S  N  Y  S  T  F  S  R  T  M  L  L  S  L  R  N  F  T  L  *  K  E  H  A  E  M  I  *  *  *  S  N  I  V  *  R  L  C  N  D  H  I  F  G  E  G  H  F  C  S  *  F  L  F  S  S  K  N  N  N  K  C  M  Y  I  *  C  Y  Q  C  W  M  S  S  *  I  G  E  P  Q  R  L  H  I  K  K  K  V  S  T  S  S  Y  I  H  K  Q  *  L  *  Y  Y  H  L  C  F  F  F  C  K  Y  L  F  I  I  N  S  Y  I  *  F  S  *  N  T  S  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59274" stop="59209"/>
                    <exon start="59133" stop="58824"/>
                    <exon start="58544" stop="58030"/>
                    <exon start="57784" stop="57611"/>
                    <exon start="57496" stop="57314"/>
                    <exon start="57219" stop="57025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAHEIIDNFANRGLRSLGVARQTVPEKDKESAGSPWEFVGLLPLFDPPRHDSAETIRKALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGDHKDESIAQIPVEELIEQADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADSTDAARGASDIVLTQPGLGVIISAVLTSRAIFQRMKNYTIYAVSITIRVVMGFMLIALIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGTYQALMTVLFFYLAASTDFFTEKFGVRSIRENEHGLTAAVYLQVSIISQALIFVTRSRSWSFVERPGVFLVVAFFLAQFVATLITVYANWDFARIHGIGWGWAAIIWIYTIITYLPLDVLKFISRYALSGDAWDSMIQNKTAFTTKKDYGKGEREAQWAVAQRTLHGLQTAESDGLFHDKNYRELNEIAEQAKRRAEVAKYTHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60039" PGL_stop="59446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60039" e_stop="59817"/>
            <exon e_start="59733" e_stop="59614"/>
            <exon e_start="59519" e_stop="59446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60039" e_stop="59817" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59816" i_stop="59734" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59733" e_stop="59614" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.945" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59613" i_stop="59520" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59519" e_stop="59446" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60039" stop="59817"/>
              <exon start="59733" stop="59614"/>
              <exon start="59519" stop="59446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333066" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGACAACTTGTTGGTGTTGCTTATTGGAGGTATCCCAATTGCCATGCCAACAGTCTTGTCTGTTACCATGGCTATTGGATCTCATCGGTTGTCCCAACAAGGCGCTATCACTAAGAGGATGACTGCTATCGAGGAAATGGCTGGTATGGATGTCCTCTGCAGTGACAAGACCGGTACCCTCACGCTTAACAAGCTTACTGTTGACCAAACCTTGATTGAG : GTATTCACTAAGAACGCAGATGCAGACACCGTTATGTTACTTGCAGCTAGAGCTTCGAGGGTTGAAAACCAGGATGCTATTGATACTTGTATCGTTAATATGTTGGGTGATGCTAAACTG : GCAAGAGAAGGCATCCAAGAGGTTCATTTCTTTCCATTCAACCCCGTTGATAAGCGCACTGCAATCACCTATAT</gDNA_template>
            <first_frame> N  *  Q  L  V  G  V  A  Y  W  R  Y  P  N  C  H  A  N  S  L  V  C  Y  H  G  Y  W  I  S  S  V  V  P  T  R  R  Y  H  *  E  D  D  C  Y  R  G  N  G  W  Y  G  C  P  L  Q  *  Q  D  R  Y  P  H  A  *  Q  A  Y  C  *  P  N  L  D  *   : G  I  H  *  E  R  R  C  R  H  R  Y  V  T  C  S  *  S  F  E  G  *  K  P  G  C  Y  *  Y  L  Y  R  *  Y  V  G  *  C  *  T   : G  K  R  R  H  P  R  G  S  F  L  S  I  Q  P  R  *  *  A  H  C  N  H  L  Y </first_frame>
            <second_frame>  I  D  N  L  L  V  L  L  I  G  G  I  P  I  A  M  P  T  V  L  S  V  T  M  A  I  G  S  H  R  L  S  Q  Q  G  A  I  T  K  R  M  T  A  I  E  E  M  A  G  M  D  V  L  C  S  D  K  T  G  T  L  T  L  N  K  L  T  V  D  Q  T  L  I  E  :  V  F  T  K  N  A  D  A  D  T  V  M  L  L  A  A  R  A  S  R  V  E  N  Q  D  A  I  D  T  C  I  V  N  M  L  G  D  A  K  L  :  A  R  E  G  I  Q  E  V  H  F  F  P  F  N  P  V  D  K  R  T  A  I  T  Y   </second_frame>
            <third_frame>   L  T  T  C  W  C  C  L  L  E  V  S  Q  L  P  C  Q  Q  S  C  L  L  P  W  L  L  D  L  I  G  C  P  N  K  A  L  S  L  R  G  *  L  L  S  R  K  W  L  V  W  M  S  S  A  V  T  R  P  V  P  S  R  L  T  S  L  L  L  T  K  P  *  L  R :   Y  S  L  R  T  Q  M  Q  T  P  L  C  Y  L  Q  L  E  L  R  G  L  K  T  R  M  L  L  I  L  V  S  L  I  C  W  V  M  L  N  W :   Q  E  K  A  S  K  R  F  I  S  F  H  S  T  P  L  I  S  A  L  Q  S  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60038" stop="59817"/>
                    <exon start="59733" stop="59614"/>
                    <exon start="59519" stop="59448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDQTLIEVFTKNADADTVMLLAARASRVENQDAIDTCIVNMLGDAKLAREGIQEVHFFPFNPVDKRTAITY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="69794" PGL_stop="69156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69794" e_stop="69744"/>
            <exon e_start="69658" e_stop="69555"/>
            <exon e_start="69465" e_stop="69156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69794" e_stop="69744" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69743" i_stop="69659" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69658" e_stop="69555" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69554" i_stop="69466" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="69465" e_stop="69156" e_length="310"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69794" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69794" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69793" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620928" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69793" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609444" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69793" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595103" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69789" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69788" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69786" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69780" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69757" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69751" stop="69744"/>
              <exon start="69658" stop="69555"/>
              <exon start="69465" stop="69260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609949" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69648" stop="69555"/>
              <exon start="69465" stop="69272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612133" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATCAGCATCAGAGCTTAAGCGCCGGGAATCTCCAACAGCAAAAATG : CCTTCGCACAAGTCATTCATGATTAAGAAGAAGCTAGCGAAGAAGCAGAGGCAGAACAGGCCAATTCCTTACTGGATCCGTATGAGGACTGATAACACAATCAG : GTACAATGCTAAGCGTAGACACTGGCGTAGGACCAAGCTAGGATTTTAAGGTGGAAGAATCGTGTTTTATTTAAGTTTTTAATGGAAAAACTTCTCGGATTATGTTTTATTTTCGAGTTCAATAGGAGCTCATTTGCTGAGGAAACAGACTGTGCTTTTAATTTTGGAAGAGATTTATATATTAATGACCGATTATGAAGTCGTTTTGTTTAATTTGAGCTGTTAAATGTTGGTTAATAGTAGTATTTTGTTATTGCATTTTCATGCATTGAGTTATCTGTTTGTGATTTATATATTAATGACCGATTAT</gDNA_template>
            <first_frame> F  Q  S  A  S  E  L  K  R  R  E  S  P  T  A  K  M  :  P  S  H  K  S  F  M  I  K  K  K  L  A  K  K  Q  R  Q  N  R  P  I  P  Y  W  I  R  M  R  T  D  N  T  I  R :   Y  N  A  K  R  R  H  W  R  R  T  K  L  G  F  *  G  G  R  I  V  F  Y  L  S  F  *  W  K  N  F  S  D  Y  V  L  F  S  S  S  I  G  A  H  L  L  R  K  Q  T  V  L  L  I  L  E  E  I  Y  I  L  M  T  D  Y  E  V  V  L  F  N  L  S  C  *  M  L  V  N  S  S  I  L  L  L  H  F  H  A  L  S  Y  L  F  V  I  Y  I  L  M  T  D  Y </first_frame>
            <second_frame>  F  N  Q  H  Q  S  L  S  A  G  N  L  Q  Q  Q  K  C :   L  R  T  S  H  S  *  L  R  R  S  *  R  R  S  R  G  R  T  G  Q  F  L  T  G  S  V  *  G  L  I  T  Q  S   : G  T  M  L  S  V  D  T  G  V  G  P  S  *  D  F  K  V  E  E  S  C  F  I  *  V  F  N  G  K  T  S  R  I  M  F  Y  F  R  V  Q  *  E  L  I  C  *  G  N  R  L  C  F  *  F  W  K  R  F  I  Y  *  *  P  I  M  K  S  F  C  L  I  *  A  V  K  C  W  L  I  V  V  F  C  Y  C  I  F  M  H  *  V  I  C  L  *  F  I  Y  *  *  P  I   </second_frame>
            <third_frame>   S  I  S  I  R  A  *  A  P  G  I  S  N  S  K  N   : A  F  A  Q  V  I  H  D  *  E  E  A  S  E  E  A  E  A  E  Q  A  N  S  L  L  D  P  Y  E  D  *  *  H  N  Q  :  V  Q  C  *  A  *  T  L  A  *  D  Q  A  R  I  L  R  W  K  N  R  V  L  F  K  F  L  M  E  K  L  L  G  L  C  F  I  F  E  F  N  R  S  S  F  A  E  E  T  D  C  A  F  N  F  G  R  D  L  Y  I  N  D  R  L  *  S  R  F  V  *  F  E  L  L  N  V  G  *  *  *  Y  F  V  I  A  F  S  C  I  E  L  S  V  C  D  L  Y  I  N  D  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69794" stop="69744"/>
                    <exon start="69658" stop="69555"/>
                    <exon start="69465" stop="69417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSASELKRRESPTAKMPSHKSFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73568" PGL_stop="70398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73568" e_stop="73506"/>
            <exon e_start="71039" e_stop="70398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73568" e_stop="73506" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="73505" i_stop="71040" i_length="2466"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="71039" e_stop="70398" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73568" stop="73506"/>
              <exon start="71039" stop="70499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73539" stop="73506"/>
              <exon start="71039" stop="70468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73539" stop="73506"/>
              <exon start="71039" stop="70474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73539" stop="73506"/>
              <exon start="71039" stop="70605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73533" stop="73506"/>
              <exon start="71039" stop="70440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73529" stop="73506"/>
              <exon start="71039" stop="70573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71039" stop="70540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70942" stop="70488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70834" stop="70398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70834" stop="70398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70747" stop="70446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348741" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCATTTCTCTGCAGCTAAACCCCTGCGGCTTTAGGTTCCAGAAACTTCGCTCATCGATTCAG : GTTAAGACGTCACTGCTAGAAATATGGCCAAGCATCATCCCGATTTGATCATGTGCCGGAAGCAGCCAGGAATAGCTATCGGTCGACTTTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCATACGTCCGGCCTTGCACACTTGTCCGAGTTTGTGATGAATGCAACTATGGATCCTTTCAAGGCCGTTGTGTCATCTGTGGTGGTGTTGGTATCTCTGATGCTTACTATTGCAAGGAGTGTACTCAGCAGGAGAAAGATAGGGATGGCTGTCCAAAGATAGTCAATCTTGGTAGTGCCAAGACCGATCTGTTTTATGAACGTAAAAAATATGGTTTCAAGAAGAGATGAGAGGGTCGGATACCTCTTTCACCCTTCGGTGAAGTTCACTACTGGAATTTTGTACTAGCATAATTGTGTCAAAATTAGGCATTTGAGTATAGCCTATGTACTTACTCACTATATTGCCTTGCAACTTGCTGTATTACATACTGATATCACAAGTTTAACCCATTGTAATTTCGTTTTGTGCAAGGGTATGCAACAAAATGCCAACGCTAATCGACTTCCGATCTAGTTTCTTTTGGGTGTAATTTGTGAAAATTTTACTTCAGTTAATTTTCTATCATGATGTACA</gDNA_template>
            <first_frame> V  I  S  L  Q  L  N  P  C  G  F  R  F  Q  K  L  R  S  S  I  Q  :  V  K  T  S  L  L  E  I  W  P  S  I  I  P  I  *  S  C  A  G  S  S  Q  E  *  L  S  V  D  F  V  R  N  V  M  G  S  V  *  F  V  I  H  T  S  G  L  A  H  L  S  E  F  V  M  N  A  T  M  D  P  F  K  A  V  V  S  S  V  V  V  L  V  S  L  M  L  T  I  A  R  S  V  L  S  R  R  K  I  G  M  A  V  Q  R  *  S  I  L  V  V  P  R  P  I  C  F  M  N  V  K  N  M  V  S  R  R  D  E  R  V  G  Y  L  F  H  P  S  V  K  F  T  T  G  I  L  Y  *  H  N  C  V  K  I  R  H  L  S  I  A  Y  V  L  T  H  Y  I  A  L  Q  L  A  V  L  H  T  D  I  T  S  L  T  H  C  N  F  V  L  C  K  G  M  Q  Q  N  A  N  A  N  R  L  P  I  *  F  L  L  G  V  I  C  E  N  F  T  S  V  N  F  L  S  *  C  T </first_frame>
            <second_frame>  S  F  L  C  S  *  T  P  A  A  L  G  S  R  N  F  A  H  R  F  R :   L  R  R  H  C  *  K  Y  G  Q  A  S  S  R  F  D  H  V  P  E  A  A  R  N  S  Y  R  S  T  L  *  E  M  *  W  E  V  C  D  L  *  F  I  R  P  A  L  H  T  C  P  S  L  *  *  M  Q  L  W  I  L  S  R  P  L  C  H  L  W  W  C  W  Y  L  *  C  L  L  L  Q  G  V  Y  S  A  G  E  R  *  G  W  L  S  K  D  S  Q  S  W  *  C  Q  D  R  S  V  L  *  T  *  K  I  W  F  Q  E  E  M  R  G  S  D  T  S  F  T  L  R  *  S  S  L  L  E  F  C  T  S  I  I  V  S  K  L  G  I  *  V  *  P  M  Y  L  L  T  I  L  P  C  N  L  L  Y  Y  I  L  I  S  Q  V  *  P  I  V  I  S  F  C  A  R  V  C  N  K  M  P  T  L  I  D  F  R  S  S  F  F  W  V  *  F  V  K  I  L  L  Q  L  I  F  Y  H  D  V   </second_frame>
            <third_frame>   H  F  S  A  A  K  P  L  R  L  *  V  P  E  T  S  L  I  D  S   : G  *  D  V  T  A  R  N  M  A  K  H  H  P  D  L  I  M  C  R  K  Q  P  G  I  A  I  G  R  L  C  E  K  C  D  G  K  C  V  I  C  D  S  Y  V  R  P  C  T  L  V  R  V  C  D  E  C  N  Y  G  S  F  Q  G  R  C  V  I  C  G  G  V  G  I  S  D  A  Y  Y  C  K  E  C  T  Q  Q  E  K  D  R  D  G  C  P  K  I  V  N  L  G  S  A  K  T  D  L  F  Y  E  R  K  K  Y  G  F  K  K  R  *  E  G  R  I  P  L  S  P  F  G  E  V  H  Y  W  N  F  V  L  A  *  L  C  Q  N  *  A  F  E  Y  S  L  C  T  Y  S  L  Y  C  L  A  T  C  C  I  T  Y  *  Y  H  K  F  N  P  L  *  F  R  F  V  Q  G  Y  A  T  K  C  Q  R  *  S  T  S  D  L  V  S  F  G  C  N  L  *  K  F  Y  F  S  *  F  S  I  M  M  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71034" stop="70684"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DVTARNMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="70398" PGL_stop="70834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70398" e_stop="70834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="70398" e_stop="70834" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70398" stop="70834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACATCATGATAGAAAATTAACTGAAGTAAAATTTTCACAAATTACACCCAAAAGAAACTAGATCGGAAGTCGATTAGCGTTGGCATTTTGTTGCATACCCTTGCACAAAACGAAATTACAATGGGTTAAACTTGTGATATCAGTATGTAATACAGCAAGTTGCAAGGCAATATAGTGAGTAAGTACATAGGCTATACTCAAATGCCTAATTTTGACACAATTATGCTAGTACAAAATTCCAGTAGTGAACTTCACCGAAGGGTGAAAGAGGTATCCGACCCTCTCATCTCTTCTTGAAACCATATTTTTTACGTTCATAAAACAGATCGGTCTTGGCACTACCAAGATTGACTATCTTTGGACAGCCATCCCTATCTTTCTCCTGCTGAGTACACTCCTTGCAATAGTAAGCATCAGAGATACCAACACCACCA</gDNA_template>
            <first_frame> C  T  S  *  *  K  I  N  *  S  K  I  F  T  N  Y  T  Q  K  K  L  D  R  K  S  I  S  V  G  I  L  L  H  T  L  A  Q  N  E  I  T  M  G  *  T  C  D  I  S  M  *  Y  S  K  L  Q  G  N  I  V  S  K  Y  I  G  Y  T  Q  M  P  N  F  D  T  I  M  L  V  Q  N  S  S  S  E  L  H  R  R  V  K  E  V  S  D  P  L  I  S  S  *  N  H  I  F  Y  V  H  K  T  D  R  S  W  H  Y  Q  D  *  L  S  L  D  S  H  P  Y  L  S  P  A  E  Y  T  P  C  N  S  K  H  Q  R  Y  Q  H  H   </first_frame>
            <second_frame>  V  H  H  D  R  K  L  T  E  V  K  F  S  Q  I  T  P  K  R  N  *  I  G  S  R  L  A  L  A  F  C  C  I  P  L  H  K  T  K  L  Q  W  V  K  L  V  I  S  V  C  N  T  A  S  C  K  A  I  *  *  V  S  T  *  A  I  L  K  C  L  I  L  T  Q  L  C  *  Y  K  I  P  V  V  N  F  T  E  G  *  K  R  Y  P  T  L  S  S  L  L  E  T  I  F  F  T  F  I  K  Q  I  G  L  G  T  T  K  I  D  Y  L  W  T  A  I  P  I  F  L  L  L  S  T  L  L  A  I  V  S  I  R  D  T  N  T  T  </second_frame>
            <third_frame>   Y  I  M  I  E  N  *  L  K  *  N  F  H  K  L  H  P  K  E  T  R  S  E  V  D  *  R  W  H  F  V  A  Y  P  C  T  K  R  N  Y  N  G  L  N  L  *  Y  Q  Y  V  I  Q  Q  V  A  R  Q  Y  S  E  *  V  H  R  L  Y  S  N  A  *  F  *  H  N  Y  A  S  T  K  F  Q  *  *  T  S  P  K  G  E  R  G  I  R  P  S  H  L  F  L  K  P  Y  F  L  R  S  *  N  R  S  V  L  A  L  P  R  L  T  I  F  G  Q  P  S  L  S  F  S  C  *  V  H  S  L  Q  *  *  A  S  E  I  P  T  P  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0215O16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="81492" PGL_stop="86984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81492" e_stop="81612"/>
            <exon e_start="82667" e_stop="82819"/>
            <exon e_start="82991" e_stop="83383"/>
            <exon e_start="83489" e_stop="83565"/>
            <exon e_start="84122" e_stop="85405"/>
            <exon e_start="86719" e_stop="86984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.699" acc_prob="0.993" e_score="0.959"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.991" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="81492" e_stop="81612" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.699" acc_prob="0.993">
            <gDNA_intron_boundary i_start="81613" i_stop="82666" i_length="1054"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82667" e_stop="82819" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="82820" i_stop="82990" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="82991" e_stop="83383" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.991">
            <gDNA_intron_boundary i_start="83384" i_stop="83488" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83489" e_stop="83565" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="83566" i_stop="84121" i_length="556"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="84122" e_stop="85405" e_length="1284"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85406" i_stop="86718" i_length="1313"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="86719" e_stop="86984" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81492" stop="81612"/>
              <exon start="82667" stop="82819"/>
              <exon start="82991" stop="83383"/>
              <exon start="83489" stop="83550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83142" stop="83383"/>
              <exon start="83489" stop="83565"/>
              <exon start="84122" stop="84592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83142" stop="83383"/>
              <exon start="83489" stop="83565"/>
              <exon start="84122" stop="84395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84485" stop="85259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84485" stop="85038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84486" stop="84999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84793" stop="85405"/>
              <exon start="86719" stop="86908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422262" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84860" stop="85405"/>
              <exon start="86719" stop="86956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84979" stop="85405"/>
              <exon start="86719" stop="86838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84979" stop="85405"/>
              <exon start="86719" stop="86809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85021" stop="85405"/>
              <exon start="86719" stop="86984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426105" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85021" stop="85405"/>
              <exon start="86719" stop="86983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85021" stop="85405"/>
              <exon start="86719" stop="86981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85232" stop="85405"/>
              <exon start="86719" stop="86946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGGTGGTGAAAGGGAAAACTATGATAATTTTCCAGTTGGTATGAGGGTTCTTGCTGTTGATGATGACCCAATTTGTTTGAAGTTGTTGGATGGACTGCTTAGGAAATGCCAGTATCACG : TTACTACGACGAGTCAGGCAAGATCGGCGTTGAAGATGTTGAGGGAAAACAAAGATAGATTTGACTTGGTGATCAGTGATGTCCACATGCCTGATATGGATGGCTTTAAACTTCTGGAGCTTGTTGGTCTCGAGATGGATCTTCCCGTCATAA : TGTTGTCAGCAAACAGTGATAGCAAACTTGTAATGAAGGGAATAACTCACGGTGCTTGTGACTATTTGGTGAAGCCTGTCCGGCTTGAGGAGCTAAAGAATATATGGCAACATGTAATAAGGAGAAAGAAAGTTGAGCCTAAGAAGCAAAACAAGTCTGATGATCAAGACAAGGCTCACCAGGGAGGAGGAGAAGGCGAAAGAGGATCACAGGTTTCAGGTAATGCAGATCAAAACGGGAAGGTTAACAAGAAAAGGAAGGATGAAGAATATGAAAGCGATGAAAATGGAAATGATGATGAAGATCCCGGAACTCAGAAGAAACCTCGTGTAGTTTGGGCTATAGAGCTTCACAAGAAGTTTGTTACAGCAGTTCATCAGTTAGGCCTTGAAA : AAGCTGTGCCTAAGAGGATTCTTGATCTGATGAATGTTGAAGGACTTACAAGAGAGAATGTGGCGAGCCATCTCCAG : AAGTATAGGCTCTTCTTGAAAAGGATCAATGCGGCAGATGCCCAGCAAGCCAACTTGGCTGCCGCTGCATTAGGGGGTAAAGATTCTGCATACATGCGAATGGGTTCACTGGACGGGCTTGGTGGTTTTCGAACGTTGGCTGGATCAGGTAGGTTCGGTCAAGCTAGCTTATCATCATCATATGCATCAGGAGGCATGCTTGGCAGACTAAATAGTCCTTCTGGTGTAAGCCTTCGCAATCTAGCATCTACACCTATTCTCCAACCTAATCATGGTCAAAATATGAGTAATAACTCCCTCAATGCCTTGATGAAATTTAACGCAAATGTTCCACCTGCTAGCCAGAATGCTAATTTTTTCCAAGGGATTCCTGCATCTTTGGAGCTTGATCAACTGCAGCAGAGCAAGTGTGCCACACACATAGGAGAGTTGAATCCTTTGGATGAGTCAGGACTGCATACAGTGGCCAGTACATTCACGAACTCTAGATTGGTTGGTAGCGCAAACAGCTCTATGCCCAATGTATCAAATAATCCTATTTTGCTTCAAGTAAATTCCCAGCAACCACTGACGGGGATGGGATTTGGAAATCAGACTTCTCTCAACGTAGCCTCTTTTAGCTCTGAGGCCTTCAATACTGGTGTAAGTGGTTCTTCCAATTTTCTGGACCATGATAGATATTCTAACGAGAATTGGCAAACTTCTCTCCAGCCTCTGAAGTTCCAGTCAACCTCCTTTCCGTTAAATGAACCTTTCAGCAACAGCCATTTGCCTCAAGACAGAGTACGAGACAATGATACTTCAACTGGCCCTCATTTGCAGAACAATCCTGTTGATTTTTCAACCTCCACCATAGTTTCCGTACCTTTCGAAGCTTCAAGAGGAGAAACACAATGCCGTGAAAGTTTAGGGGCTGCTGTTCAGATTATGAACCAAGCAACCTGCCAACGGTGGCCAGATCAGAACCAACATTATTCCCACAATTCAAACAATATTTTTGGTAACATGAGCTCTCAAGTTTCTAGCAATGGTGGAATGGCCTCTTTAACTCATCCTGTGGACCAAAACAATGATATGTTCTGCACAAGGGTGGAGACTTCTTTGAACTGCATATCAAATGGTAGTTCTTCAATGCACACACACAATCGTGAAAGTGAAAAATTAACTCATGACTCGAGGACAAAAACAAATGAAGACTACCTCTTCCAGACAACAAAGCAACAAGTTGGTTTTCTTCCTCAGGGCTATGGCTCCCTTGATGATCTTATGGGTGAAATGAAACAG : GATCAAGATGGAGCCATGTTAGACGGAGGAGAATTCGGATTTGATGCTTATTCACTTGGTTCAGGTTTATGAGGTTTTTGTAACTAGCAAGTTAGGAAGGAGAGGATCTAGTGATATAGCAAAATTTTATTTGCTCATTTAAGAGTCTCAACAACATATGCATACTATGCCTTCTTTTTCATTGTTATTTTCCTGTCCAGGAACGGTGTTATCGATCGTAGAAAACTCTTAAACGCTAATTACTTGTTGCTTTTAAAGGGCCGGTT</gDNA_template>
            <first_frame> M  G  G  E  R  E  N  Y  D  N  F  P  V  G  M  R  V  L  A  V  D  D  D  P  I  C  L  K  L  L  D  G  L  L  R  K  C  Q  Y  H   : V  T  T  T  S  Q  A  R  S  A  L  K  M  L  R  E  N  K  D  R  F  D  L  V  I  S  D  V  H  M  P  D  M  D  G  F  K  L  L  E  L  V  G  L  E  M  D  L  P  V  I   : M  L  S  A  N  S  D  S  K  L  V  M  K  G  I  T  H  G  A  C  D  Y  L  V  K  P  V  R  L  E  E  L  K  N  I  W  Q  H  V  I  R  R  K  K  V  E  P  K  K  Q  N  K  S  D  D  Q  D  K  A  H  Q  G  G  G  E  G  E  R  G  S  Q  V  S  G  N  A  D  Q  N  G  K  V  N  K  K  R  K  D  E  E  Y  E  S  D  E  N  G  N  D  D  E  D  P  G  T  Q  K  K  P  R  V  V  W  A  I  E  L  H  K  K  F  V  T  A  V  H  Q  L  G  L  E   : K  A  V  P  K  R  I  L  D  L  M  N  V  E  G  L  T  R  E  N  V  A  S  H  L  Q  :  K  Y  R  L  F  L  K  R  I  N  A  A  D  A  Q  Q  A  N  L  A  A  A  A  L  G  G  K  D  S  A  Y  M  R  M  G  S  L  D  G  L  G  G  F  R  T  L  A  G  S  G  R  F  G  Q  A  S  L  S  S  S  Y  A  S  G  G  M  L  G  R  L  N  S  P  S  G  V  S  L  R  N  L  A  S  T  P  I  L  Q  P  N  H  G  Q  N  M  S  N  N  S  L  N  A  L  M  K  F  N  A  N  V  P  P  A  S  Q  N  A  N  F  F  Q  G  I  P  A  S  L  E  L  D  Q  L  Q  Q  S  K  C  A  T  H  I  G  E  L  N  P  L  D  E  S  G  L  H  T  V  A  S  T  F  T  N  S  R  L  V  G  S  A  N  S  S  M  P  N  V  S  N  N  P  I  L  L  Q  V  N  S  Q  Q  P  L  T  G  M  G  F  G  N  Q  T  S  L  N  V  A  S  F  S  S  E  A  F  N  T  G  V  S  G  S  S  N  F  L  D  H  D  R  Y  S  N  E  N  W  Q  T  S  L  Q  P  L  K  F  Q  S  T  S  F  P  L  N  E  P  F  S  N  S  H  L  P  Q  D  R  V  R  D  N  D  T  S  T  G  P  H  L  Q  N  N  P  V  D  F  S  T  S  T  I  V  S  V  P  F  E  A  S  R  G  E  T  Q  C  R  E  S  L  G  A  A  V  Q  I  M  N  Q  A  T  C  Q  R  W  P  D  Q  N  Q  H  Y  S  H  N  S  N  N  I  F  G  N  M  S  S  Q  V  S  S  N  G  G  M  A  S  L  T  H  P  V  D  Q  N  N  D  M  F  C  T  R  V  E  T  S  L  N  C  I  S  N  G  S  S  S  M  H  T  H  N  R  E  S  E  K  L  T  H  D  S  R  T  K  T  N  E  D  Y  L  F  Q  T  T  K  Q  Q  V  G  F  L  P  Q  G  Y  G  S  L  D  D  L  M  G  E  M  K  Q  :  D  Q  D  G  A  M  L  D  G  G  E  F  G  F  D  A  Y  S  L  G  S  G  L  *  G  F  C  N  *  Q  V  R  K  E  R  I  *  *  Y  S  K  I  L  F  A  H  L  R  V  S  T  T  Y  A  Y  Y  A  F  F  F  I  V  I  F  L  S  R  N  G  V  I  D  R  R  K  L  L  N  A  N  Y  L  L  L  L  K  G  R   </first_frame>
            <second_frame>  W  V  V  K  G  K  T  M  I  I  F  Q  L  V  *  G  F  L  L  L  M  M  T  Q  F  V  *  S  C  W  M  D  C  L  G  N  A  S  I  T  :  L  L  R  R  V  R  Q  D  R  R  *  R  C  *  G  K  T  K  I  D  L  T  W  *  S  V  M  S  T  C  L  I  W  M  A  L  N  F  W  S  L  L  V  S  R  W  I  F  P  S  *  :  C  C  Q  Q  T  V  I  A  N  L  *  *  R  E  *  L  T  V  L  V  T  I  W  *  S  L  S  G  L  R  S  *  R  I  Y  G  N  M  *  *  G  E  R  K  L  S  L  R  S  K  T  S  L  M  I  K  T  R  L  T  R  E  E  E  K  A  K  E  D  H  R  F  Q  V  M  Q  I  K  T  G  R  L  T  R  K  G  R  M  K  N  M  K  A  M  K  M  E  M  M  M  K  I  P  E  L  R  R  N  L  V  *  F  G  L  *  S  F  T  R  S  L  L  Q  Q  F  I  S  *  A  L  K  :  K  L  C  L  R  G  F  L  I  *  *  M  L  K  D  L  Q  E  R  M  W  R  A  I  S  R :   S  I  G  S  S  *  K  G  S  M  R  Q  M  P  S  K  P  T  W  L  P  L  H  *  G  V  K  I  L  H  T  C  E  W  V  H  W  T  G  L  V  V  F  E  R  W  L  D  Q  V  G  S  V  K  L  A  Y  H  H  H  M  H  Q  E  A  C  L  A  D  *  I  V  L  L  V  *  A  F  A  I  *  H  L  H  L  F  S  N  L  I  M  V  K  I  *  V  I  T  P  S  M  P  *  *  N  L  T  Q  M  F  H  L  L  A  R  M  L  I  F  S  K  G  F  L  H  L  W  S  L  I  N  C  S  R  A  S  V  P  H  T  *  E  S  *  I  L  W  M  S  Q  D  C  I  Q  W  P  V  H  S  R  T  L  D  W  L  V  A  Q  T  A  L  C  P  M  Y  Q  I  I  L  F  C  F  K  *  I  P  S  N  H  *  R  G  W  D  L  E  I  R  L  L  S  T  *  P  L  L  A  L  R  P  S  I  L  V  *  V  V  L  P  I  F  W  T  M  I  D  I  L  T  R  I  G  K  L  L  S  S  L  *  S  S  S  Q  P  P  F  R  *  M  N  L  S  A  T  A  I  C  L  K  T  E  Y  E  T  M  I  L  Q  L  A  L  I  C  R  T  I  L  L  I  F  Q  P  P  P  *  F  P  Y  L  S  K  L  Q  E  E  K  H  N  A  V  K  V  *  G  L  L  F  R  L  *  T  K  Q  P  A  N  G  G  Q  I  R  T  N  I  I  P  T  I  Q  T  I  F  L  V  T  *  A  L  K  F  L  A  M  V  E  W  P  L  *  L  I  L  W  T  K  T  M  I  C  S  A  Q  G  W  R  L  L  *  T  A  Y  Q  M  V  V  L  Q  C  T  H  T  I  V  K  V  K  N  *  L  M  T  R  G  Q  K  Q  M  K  T  T  S  S  R  Q  Q  S  N  K  L  V  F  F  L  R  A  M  A  P  L  M  I  L  W  V  K  *  N  R :   I  K  M  E  P  C  *  T  E  E  N  S  D  L  M  L  I  H  L  V  Q  V  Y  E  V  F  V  T  S  K  L  G  R  R  G  S  S  D  I  A  K  F  Y  L  L  I  *  E  S  Q  Q  H  M  H  T  M  P  S  F  S  L  L  F  S  C  P  G  T  V  L  S  I  V  E  N  S  *  T  L  I  T  C  C  F  *  R  A  G  </second_frame>
            <third_frame>   G  W  *  K  G  K  L  *  *  F  S  S  W  Y  E  G  S  C  C  *  *  *  P  N  L  F  E  V  V  G  W  T  A  *  E  M  P  V  S  R :   Y  Y  D  E  S  G  K  I  G  V  E  D  V  E  G  K  Q  R  *  I  *  L  G  D  Q  *  C  P  H  A  *  Y  G  W  L  *  T  S  G  A  C  W  S  R  D  G  S  S  R  H  N :   V  V  S  K  Q  *  *  Q  T  C  N  E  G  N  N  S  R  C  L  *  L  F  G  E  A  C  P  A  *  G  A  K  E  Y  M  A  T  C  N  K  E  K  E  S  *  A  *  E  A  K  Q  V  *  *  S  R  Q  G  S  P  G  R  R  R  R  R  K  R  I  T  G  F  R  *  C  R  S  K  R  E  G  *  Q  E  K  E  G  *  R  I  *  K  R  *  K  W  K  *  *  *  R  S  R  N  S  E  E  T  S  C  S  L  G  Y  R  A  S  Q  E  V  C  Y  S  S  S  S  V  R  P  *  K :   S  C  A  *  E  D  S  *  S  D  E  C  *  R  T  Y  K  R  E  C  G  E  P  S  P   : E  V  *  A  L  L  E  K  D  Q  C  G  R  C  P  A  S  Q  L  G  C  R  C  I  R  G  *  R  F  C  I  H  A  N  G  F  T  G  R  A  W  W  F  S  N  V  G  W  I  R  *  V  R  S  S  *  L  I  I  I  I  C  I  R  R  H  A  W  Q  T  K  *  S  F  W  C  K  P  S  Q  S  S  I  Y  T  Y  S  P  T  *  S  W  S  K  Y  E  *  *  L  P  Q  C  L  D  E  I  *  R  K  C  S  T  C  *  P  E  C  *  F  F  P  R  D  S  C  I  F  G  A  *  S  T  A  A  E  Q  V  C  H  T  H  R  R  V  E  S  F  G  *  V  R  T  A  Y  S  G  Q  Y  I  H  E  L  *  I  G  W  *  R  K  Q  L  Y  A  Q  C  I  K  *  S  Y  F  A  S  S  K  F  P  A  T  T  D  G  D  G  I  W  K  S  D  F  S  Q  R  S  L  F  *  L  *  G  L  Q  Y  W  C  K  W  F  F  Q  F  S  G  P  *  *  I  F  *  R  E  L  A  N  F  S  P  A  S  E  V  P  V  N  L  L  S  V  K  *  T  F  Q  Q  Q  P  F  A  S  R  Q  S  T  R  Q  *  Y  F  N  W  P  S  F  A  E  Q  S  C  *  F  F  N  L  H  H  S  F  R  T  F  R  S  F  K  R  R  N  T  M  P  *  K  F  R  G  C  C  S  D  Y  E  P  S  N  L  P  T  V  A  R  S  E  P  T  L  F  P  Q  F  K  Q  Y  F  W  *  H  E  L  S  S  F  *  Q  W  W  N  G  L  F  N  S  S  C  G  P  K  Q  *  Y  V  L  H  K  G  G  D  F  F  E  L  H  I  K  W  *  F  F  N  A  H  T  Q  S  *  K  *  K  I  N  S  *  L  E  D  K  N  K  *  R  L  P  L  P  D  N  K  A  T  S  W  F  S  S  S  G  L  W  L  P  *  *  S  Y  G  *  N  E  T   : G  S  R  W  S  H  V  R  R  R  R  I  R  I  *  C  L  F  T  W  F  R  F  M  R  F  L  *  L  A  S  *  E  G  E  D  L  V  I  *  Q  N  F  I  C  S  F  K  S  L  N  N  I  C  I  L  C  L  L  F  H  C  Y  F  P  V  Q  E  R  C  Y  R  S  *  K  T  L  K  R  *  L  L  V  A  F  K  G  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81492" stop="81612"/>
                    <exon start="82667" stop="82819"/>
                    <exon start="82991" stop="83383"/>
                    <exon start="83489" stop="83565"/>
                    <exon start="84122" stop="85405"/>
                    <exon start="86719" stop="86790"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2097</number_coding_nucleotides>
                  <number_encoded_amino_acids>699</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGGERENYDNFPVGMRVLAVDDDPICLKLLDGLLRKCQYHVTTTSQARSALKMLRENKDRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANSDSKLVMKGITHGACDYLVKPVRLEELKNIWQHVIRRKKVEPKKQNKSDDQDKAHQGGGEGERGSQVSGNADQNGKVNKKRKDEEYESDENGNDDEDPGTQKKPRVVWAIELHKKFVTAVHQLGLEKAVPKRILDLMNVEGLTRENVASHLQKYRLFLKRINAADAQQANLAAAALGGKDSAYMRMGSLDGLGGFRTLAGSGRFGQASLSSSYASGGMLGRLNSPSGVSLRNLASTPILQPNHGQNMSNNSLNALMKFNANVPPASQNANFFQGIPASLELDQLQQSKCATHIGELNPLDESGLHTVASTFTNSRLVGSANSSMPNVSNNPILLQVNSQQPLTGMGFGNQTSLNVASFSSEAFNTGVSGSSNFLDHDRYSNENWQTSLQPLKFQSTSFPLNEPFSNSHLPQDRVRDNDTSTGPHLQNNPVDFSTSTIVSVPFEASRGETQCRESLGAAVQIMNQATCQRWPDQNQHYSHNSNNIFGNMSSQVSSNGGMASLTHPVDQNNDMFCTRVETSLNCISNGSSSMHTHNRESEKLTHDSRTKTNEDYLFQTTKQQVGFLPQGYGSLDDLMGEMKQDQDGAMLDGGEFGFDAYSLGSGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="98621" PGL_stop="97794"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98621" e_stop="97794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="98621" e_stop="97794" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98621" stop="97794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710412" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAAATCATGTCTAGTGACCGAGTCCTTCAACATGCTAGTTTTTCTGTCATTGTTATGTTGACTGCTCTCACTTGTAATTTCCTTGAAGAGTTCTATCAAGTCTTTAATACTTTTAGTTCTTCAAGCCTGTGATACCTTATTTGCATGAACCAATTATATAGTTTGTGGTATCTCAGTTTGTTGTTTATGTTAAATTTCATGAATGATCCTCGCGTTGAGCATGTTCATTCCATTAGATATAATTTGAAGCTTTTGCTTTCCTAAGATCCTCGACGTGTCATTGACGACATTAAACGCTCTGCTGATTAGATTTGTAGAAAACCATATTTGTCTACCTTTCTCTTCCTCTTCGTATTGAAATGAATATCGTTTACTAATAAAACATTAGGCATTATTCCTTCCATACCCAATTCTGAAACTTTTGTTTCATGTAAACTAAAGAAGTCAATAGTATATTTAGTTACACAGACTCCCTATTTTATTTCAAGCCTTCTGTTTGTTGGTCTATCAAATGTGCATTTTTTTTATTCGACTGTGGTGTCTTGGCCAAGTTTTCACGCACGTCAATTAGTACCTCCCTCTCACTAAGGCTTGGACAAGTCGAAAGAAATCACCTAGTGTTTTTGCATGTTTTTTCCAATGGATTCTTGTTTTTCGTCTTAACAAAATGTATTTTGTTGGCAGATATTAAGTAGGCAAACACGTCTTGACGATGAGATTTACAACCAGCTTGTTGAGAAGGCTAAAGAAGAAGGCTACGACGTGAGTAAGCTCCACAAGACGCCACAATCTGATTCCCCACCAGATAGTGAAGATAGCCCCAAAG</gDNA_template>
            <first_frame> V  K  S  C  L  V  T  E  S  F  N  M  L  V  F  L  S  L  L  C  *  L  L  S  L  V  I  S  L  K  S  S  I  K  S  L  I  L  L  V  L  Q  A  C  D  T  L  F  A  *  T  N  Y  I  V  C  G  I  S  V  C  C  L  C  *  I  S  *  M  I  L  A  L  S  M  F  I  P  L  D  I  I  *  S  F  C  F  P  K  I  L  D  V  S  L  T  T  L  N  A  L  L  I  R  F  V  E  N  H  I  C  L  P  F  S  S  S  S  Y  *  N  E  Y  R  L  L  I  K  H  *  A  L  F  L  P  Y  P  I  L  K  L  L  F  H  V  N  *  R  S  Q  *  Y  I  *  L  H  R  L  P  I  L  F  Q  A  F  C  L  L  V  Y  Q  M  C  I  F  F  I  R  L  W  C  L  G  Q  V  F  T  H  V  N  *  Y  L  P  L  T  K  A  W  T  S  R  K  K  S  P  S  V  F  A  C  F  F  Q  W  I  L  V  F  R  L  N  K  M  Y  F  V  G  R  Y  *  V  G  K  H  V  L  T  M  R  F  T  T  S  L  L  R  R  L  K  K  K  A  T  T  *  V  S  S  T  R  R  H  N  L  I  P  H  Q  I  V  K  I  A  P  K </first_frame>
            <second_frame>  *  N  H  V  *  *  P  S  P  S  T  C  *  F  F  C  H  C  Y  V  D  C  S  H  L  *  F  P  *  R  V  L  S  S  L  *  Y  F  *  F  F  K  P  V  I  P  Y  L  H  E  P  I  I  *  F  V  V  S  Q  F  V  V  Y  V  K  F  H  E  *  S  S  R  *  A  C  S  F  H  *  I  *  F  E  A  F  A  F  L  R  S  S  T  C  H  *  R  H  *  T  L  C  *  L  D  L  *  K  T  I  F  V  Y  L  S  L  P  L  R  I  E  M  N  I  V  Y  *  *  N  I  R  H  Y  S  F  H  T  Q  F  *  N  F  C  F  M  *  T  K  E  V  N  S  I  F  S  Y  T  D  S  L  F  Y  F  K  P  S  V  C  W  S  I  K  C  A  F  F  L  F  D  C  G  V  L  A  K  F  S  R  T  S  I  S  T  S  L  S  L  R  L  G  Q  V  E  R  N  H  L  V  F  L  H  V  F  S  N  G  F  L  F  F  V  L  T  K  C  I  L  L  A  D  I  K  *  A  N  T  S  *  R  *  D  L  Q  P  A  C  *  E  G  *  R  R  R  L  R  R  E  *  A  P  Q  D  A  T  I  *  F  P  T  R  *  *  R  *  P  Q   </second_frame>
            <third_frame>   E  I  M  S  S  D  R  V  L  Q  H  A  S  F  S  V  I  V  M  L  T  A  L  T  C  N  F  L  E  E  F  Y  Q  V  F  N  T  F  S  S  S  S  L  *  Y  L  I  C  M  N  Q  L  Y  S  L  W  Y  L  S  L  L  F  M  L  N  F  M  N  D  P  R  V  E  H  V  H  S  I  R  Y  N  L  K  L  L  L  S  *  D  P  R  R  V  I  D  D  I  K  R  S  A  D  *  I  C  R  K  P  Y  L  S  T  F  L  F  L  F  V  L  K  *  I  S  F  T  N  K  T  L  G  I  I  P  S  I  P  N  S  E  T  F  V  S  C  K  L  K  K  S  I  V  Y  L  V  T  Q  T  P  Y  F  I  S  S  L  L  F  V  G  L  S  N  V  H  F  F  Y  S  T  V  V  S  W  P  S  F  H  A  R  Q  L  V  P  P  S  H  *  G  L  D  K  S  K  E  I  T  *  C  F  C  M  F  F  P  M  D  S  C  F  S  S  *  Q  N  V  F  C  W  Q  I  L  S  R  Q  T  R  L  D  D  E  I  Y  N  Q  L  V  E  K  A  K  E  E  G  Y  D  V  S  K  L  H  K  T  P  Q  S  D  S  P  P  D  S  E  D  S  P  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98185" stop="97925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKEVNSIFSYTDSLFYFKPSVCWSIKCAFFLFDCGVLAKFSRTSISTSLSLRLGQVERNHLVFLHVFSNGFLFFVLTKCILLADIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0215O16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98256" stop="98032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFTNKTLGIIPSIPNSETFVSCKLKKSIVYLVTQTPYFISSLLFVGLSNVHFFYSTVVSWPSFHARQLVPPSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 238 chains have been computed
$ 
$ memory statistics:
$ 248304 bytes spliced alignments in total
$ 78 spliced alignments have been stored
$ 3183 bytes was the average size of a spliced alignment
$ 22296 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1715 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 268 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:00:08
-->
