<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:20:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294755" ref_strand="+" ref_description="SGN-E294755 [cLET-17-O11](-)">
      <seq>atgaagaggagtgaccagaaacaacagaagcagaagcaccggcggcaggtgcaacggcggcgattgtgtcggtggtaggcagttggagttggtcggtaagggatgcgattcgggttgtacatttggttcttcgccgccggaggaggaaattgcggcggcttcgcggcggctttgggattgacggccgccgcagcggcaccggtaatattggcagcgttgccatttggcttagctgaagggtgaactctgtcagccattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="7223" stop="6363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6923" g_stop="6663" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E294755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6923" e_stop="6663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</genome_strand>
        <mrna_strand>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294754" ref_strand="+" ref_description="SGN-E294754 [cLET-17-O11]">
      <seq>aaaaatggctgacagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6363" stop="7223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6663" g_stop="6923" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E294754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6663" e_stop="6923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCAT</genome_strand>
        <mrna_strand>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687863" ref_strand="+" ref_description="SGN-E687863 [T3_tus_81_F24]">
      <seq>tagagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatggcgtctcaagtgctcgatgcggattcaatttcatcgttgaaatcagatctgaaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgaacggaatccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6376" stop="7710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6675" g_stop="7410" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E687863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6675" e_stop="7410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTG-AAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTG-ACGGAATCCATGGA</genome_strand>
        <mrna_strand>TAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGAACGGAATCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327237" ref_strand="+" ref_description="SGN-E327237 [cTOC-19-M7]">
      <seq>agagttcacccttcagctaagccaaatggcaacgctgccaatattaccggtgccgctgcggcggccgtcaatcccaaagccgccgcgaagccgccgcaatttcctcctccggcggcgaagaaccaaatgtacaacccgaatcgcatcccttaccgaccaactccaactgcctaccaccgacacaatcgccgccgttgcacctgccgccggtgcttctgcttctgttgtttctggtcactcctcttcatctgcaccgtcctcctcctcgccacaatcgccggcgccggtttctacttcctattccgtccaaaacctccggcattctccgtttcctcactcaaaatcatccaattcaaactcaccactacctccgacgacactacacacctcaccgttaagctcaatctcacactctccactaaaaaccctaacaaaaagctgatttacagttacgatccaatttccttaactgtaaactcgaattcagttctactagctaatggatcgttcacaggattcaacagcggtcctaataacatcacaatcattcactcaactctatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6376" stop="7542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6676" g_stop="7242" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E327237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6676" e_stop="7242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</genome_strand>
        <mrna_strand>AGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539256" ref_strand="+" ref_description="SGN-E539256 [TUS-58-O18]">
      <seq>tgcggattcaatttcatcgttgaaatcagatctgaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgacggaatccatggaagaattccgacggggaaaactccggcggtggcttcaactacaaatgctaaatgtaaggctgatttacgtatgaagatcttaaaatggaccttctaaattcattttttcgggacgagcgaagggcgaaaaacacatctaaattatctcgatgaattatttatcggtgtggaggtccttttttatttgaagtatgatcaaatatttatcgaatcacacgttaaccatacgttttcacttttttctaccttaatacggtaataattcaggtagaaaacgtgaatggctatagcttacgtatgttttgataaataattggttataattcggatagaaaaagcaaacacgtgataatttggatagaaaattcaaaaaatcgagatagttaaatgtagtttttttttttttactctttaacttatttttcgttgtttttatttttatttatcaattatttgcttgatttttgcaatttattcataataatattatactatactatttatttagtagagatgaggcaaattgagggggaaaatggttttatgtagatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6960" stop="8267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7260" g_stop="7967" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E539256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7260" e_stop="7967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTT</genome_strand>
        <mrna_strand>TGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283511" ref_strand="+" ref_description="SGN-E283511 [cLER-12-M21]">
      <seq>gcggattcaatttcatcgttgaaatcagatctgaaaagaaaaaatggattaccgatgaagatcttgttggatacaatggtgctagcgaaaatggataaattgaaaagtaaggaagtcgggatcagagttacttgtgacggaatccatggaagaattccgacggggaaaactccggcggtggcttcaactacaaatgctaaatgtaaggctgatttacgtatgaagatcttaaaatggaccttctaaattcattttttcgggacgagcgaagggcgaaaaacacatctaaattatctcgatgaattatttatcggtgtggaggtccttttttatttgaagtatgatcaaatatttatcgaatcacacgttaaccatacgttttcacttttttctaccttaatacggtaataattcaggtagaaaacgtgaatggctatagcttacgtatgttttgataaataattggttataattcggatagaaaaagcaaacacgtgataatttggatagaaaattcaaaaaatcgagatagttaaatgtaggtttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="6961" stop="8115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7261" g_stop="7815" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E283511" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7261" e_stop="7815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTT</genome_strand>
        <mrna_strand>GCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGGTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539253" ref_strand="-" ref_description="SGN-E539253 [TUS-58-O18](-)">
      <seq>tgggtacgggcccccctcgagtttttttttttttctttttttttttttttttttttttttttttttttttttattaaaaataatatatcaaacccttttttttttttttgctttttgggatattataattatatcaaacactatttttccccaaaaaaaatctacataaaaccattttcccccccaatttgccccatctctactaaataaatagtatagtataatatttttatgaaaaaattgcaaaaatcaagcaaataattggtaaataaaaataaaaaccccgaaaaataagttaaagagtaaaaaaaaaaaaactccctttaactatcccgattttttgaattttctatccaaattatcacgggtttgctttttctatccgaattataaccaattttttttcaaaacatacgtaagctatagccattcccgttttctacctgaattattaccgtattaagggaaaaaaaagtgaaaacgtttggttaacgggggattcgaaaaatatttgatcatacttcaaataaaaaaggacctccccaccgataaataattcatcgagataatttagatgtgtttttcgcccttcgctcgtcccgaaaaaatgaatttagaaggcccattttaagatcttcatacgtaaatcagccttacatttagcatttgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="42276" stop="7148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9583" g_stop="9515" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.536"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9514" i_stop="8053" i_length="1462">
            <donor d_prob="0.000" d_score="0.58"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8052" g_stop="7448" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="672" r_length="604" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E539253" ref_strand="-">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539253" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9583" e_stop="9515"/>
          <exon e_start="8052" e_stop="7448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAGATTTATCTAACCAATCATGATTCATGCCGAGTAGGCTCTCTAATCGAGAAATACGAGAAGCAAATTGTTGTGTGGATGAATTAATATCTATACTTAAAAAGAGGTAGATTTTGTATCACTTCATCTAGTCGTATGAAACTCGCGAATACCTATCACTTTTGGAAAGATTTGAAATTCTTCATGTAGGGTCTAAAAATTTGATATTTTTTTGTCTAGTTACTTGTTTTTCAACATTTCTTTGCCTAAATTGTTGACCGAGGTTCCGCGCCTAGTGATTTTCCTTTCAAAAAGTCTACACGTGATTTTCCTTTATCAAGTAGATCCTCAAATATAGAAAGTAAAACTTGCCCGAGTAATTTCGTATAAAAGGTAAAAACCTCTTCAAATCGTTGTTCCTTGCCTAGTCAATCAATTAGAATTCATGTCAGGTAGGTCTTTTAAGATTTGCCCGAACTTACGTTGGGTAGGTCCTCTAATTGAGATCAACTAATTTGGATTCATGCATGTAAGGTCCTCTAATCGAGAAGGTAAAACTTGTTTCTAACCAATCACGATTGTGTAGATCTTCTATTCTAAAGAAGGTACTACGTTTCTAAATAAAGATGAAGAAATCTCATTCATACAATAACTTATGTTGTGTTTAAATAAACCCCTCTATTATAAAGAATATAATACGATTCTGAATAAAAATGAAGAAATCTCATCCACGCAATAACTCTTTAACAATGCTTATACTCAATGTTGTGTTTGAGGTTGATATTATAATGCTTTAGAATGATACATGTAAATGCAAATATACAACGTATGAATTCAATATAACTCAATCGTAAATATACTAAGAATTTCACTAAATACGTACATATTATAAACTATATGAACTCGAAAACATAAATTGATTTCGGCTTTAAATTTTGAACTAGCCTCATAAATACAAAACTATGTGTAAATTAGGAAATAATTAATGACTTAGATTGAGATCCACAATGAAATTAACTAGAGAGTAATTTTCTTTAGTACTTATTAATTATGATTGTCAAATTAACAATAAAGTATCTTATTATAATAAAATAATTATATATAACTGTACTATATCATCAACAAATCTAATGTATCCCCAAATAAGAGTTTGAAAATGCTAGAATATATATTAATTTTACATTTACCATAAAAAGATAAAGATATCTTTAAGATAAATTTTTGAATTAAAGAATATAATAGCAACAAATTGAAATAACAATAAGACAATACGAATAATCGAGACTAAAAAAACAATAATAAAAGTCTAAGTATACAAAATAATAACAAGGATAAAACCACTACTTGGAAAACATAATAAAAATTTACATAAATATAATTATTAAGTCACATTAAAGAAGAATTTATTAAGAATAATATATCAAACTCTTTTTTTTTTTTTTTGCTTTTTGGTATATTATAATTATATCAAACACTATATTTCACCAAAAAAAATCTACATAAAACCATTTTCCCCCTCAATTTGCCTCATCTCTACTAAATAAATAGTATAGTATAATATTATTATGAATAAATTGCAAAAATCAAGCAAATAATTGATAAATAAAAATAAAAACAACGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTACATTTAACTATCTCGATTTTTTGAATTTTCTATCCAAATTATCACGTGTTTGCTTTTTCTATCCGAATTATAACCAATTATTTATCAAAACATACGTAAGCTATAGCCATTCACGTTTTCTACCTGAATTATTACCGTATTAAGGTAGAAAAAAGTGAAAACGTATGGTTAACGTGTGATTCGATAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCACACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGTCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAG</genome_strand>
        <mrna_strand>TGGGTACGG-GCCCCCCTCGAGTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTAAAAATAATATATCAAACCCTTTTTTTTTTTTTT-GCTTTTTGGGATATTATAATTATATCAAACACTATTTTTCCCCAAAAAAAATCTACATAAAACCATTTTCCCCCCCAATTTGCCCCATCTCTACTAAATAAATAGTATAGTATAATATTTTTATGAAAAAATTGCAAAAATCAAGCAAATAATTGGTAAATAAAAATAAAAACCCCGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTCCCTTTAACTATCCCGATTTTTTGAATTTTCTATCCAAATTATCACGGGTTTGCTTTTTCTATCCGAATTATAACCAATTTTTTTTCAAAACATACGTAAGCTATAGCCATTCCCGTTTTCTACCTGAATTATTACCGTATTAAGGGAAAAAAAAGTGAAAACGTTTGGTTAACGGGGGATTCGAAAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCCCACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGCCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229351" ref_strand="+" ref_description="SGN-E229351 [cLEL-4-F16](-)">
      <seq>caactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttctaatgtttgatgctatatttatgtcccactgtttcgtgctcaatcaatcaaagattcatgttaggttaggtccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="9943" stop="9129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9643" g_stop="9430" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="215" polyA_stop="230"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E229351" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9643" e_stop="9430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</genome_strand>
        <mrna_strand>CAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCGTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411996" ref_strand="+" ref_description="SGN-E411996 [STM-15-H13]">
      <seq>cactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaagctcgaaacactctgtgatctttacgagaccttggccatcacccagagtgtcatctttgttaacaccaggcgaaaggttgattggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacactagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctctcttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgcaatcaactttgttaccaaggatgacgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctttgaggtgattttggctctgtgagggggaattgttccttcccaactggaagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgttattttgtttttggaagtgtccaaataactttggatttggttgtttgaattttgtttatttgaactatttttctatggacgttaggcttttagttctattttctaatggtggtgctatatttatgcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10516" stop="9218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10216" g_stop="9481" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E411996" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10216" e_stop="9481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCA</genome_strand>
        <mrna_strand>CACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAGCTCGAAACACTCTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTTAACACCAGGCGAAAGGTTGATTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCTCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCAATCAACTTTGTTACCAAGGATGACGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGATTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCAACTGGAAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGG-TTTT-TGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTTG-T-TTGAATTTTGTTTATTTGAACTATTTTTCTATGGACGTTAGGCTTTTAGTT-CTATTTTCTAATG-GTGGTGCTATATTTATGCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349352" ref_strand="+" ref_description="SGN-E349352 [cTOS-1-G6]">
      <seq>tcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10186" stop="9206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9886" g_stop="9507" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="391"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E349352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9886" e_stop="9507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</genome_strand>
        <mrna_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354549" ref_strand="+" ref_description="SGN-E354549 [cTOS-17-E22]">
      <seq>tcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgttttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10186" stop="9206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9886" g_stop="9507" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="391"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E354549" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9886" e_stop="9507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</genome_strand>
        <mrna_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734208" ref_strand="+" ref_description="SGN-E734208 [LB12AC07]">
      <seq>ctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17365" stop="9216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11058" g_stop="11035" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9512" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="866" r_length="842" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E734208" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11058" e_stop="11035"/>
          <exon e_start="10353" e_stop="9512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTT</genome_strand>
        <mrna_strand>CTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747381" ref_strand="+" ref_description="SGN-E747381 [GI|47104581]">
      <seq>tcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaactatttttctatgaatgttaggcttttagttaatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="9214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13300" g_stop="13168" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.782"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="205" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="312" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="743" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="9515" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="1582" r_length="839" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1584" polyA_stop="1603"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E747381" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1579</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13300" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="9515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCT-AAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAT</genome_strand>
        <mrna_strand>TCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544490" ref_strand="+" ref_description="SGN-E544490 [TUS-66-N15](-)">
      <seq>gatttatgatatatcccagcttttgccaccaaagatccaagtgggtgtttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaattttgtctggtttttgtgttattttgtttttggaagtgtccaaataactttggatttggtggttgttttgaattgtttatttgaacttttttcttgaaaccaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10654" stop="9234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10354" g_stop="9539" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="840"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E544490" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10354" e_stop="9539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCT</genome_strand>
        <mrna_strand>GATTTATGATATATCCCAGCTTTTGCCACCAAAGATCCAAGTGGGTG-TTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACT-TTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588178" ref_strand="+" ref_description="SGN-E588178 [41726]">
      <seq>caaaattcaaacaaccaaatccaaagttatttggacacttccaaaaacaaaataacaaaaaccagacaaaatttgcagttgttcactctgaataaatatattagactacttccagttgggaaggaacaattccccctcacagagccaaaatcacctcaaaggagatcagcaacattggctgggagctcctcaattacgacgttgtaaaacttctgtatgtcaaaaagcatcctttcgtcatccttggtaacaaagttgattgcaacacccttccttccaaatcgtccactacgaccaatacgatgcaggtagttttctggttgagttggcaggtcatagttaataacaagagagacttgttggacatcaataccacgagcaaggagatcggttgtgataagcacacgagatgagccagatcggaactccctcataatgatatctctagtgttctgatccatgtctccgtgagttgcagatactgtgtgatcacggccacgcattttatcagtgagccaatcaacctttcgcctggtgttaacaaagatgacactctgggtgatggccaaggtctcgtaaagatcacagagtgtttcgagcttccactcttccttatcgacgttgacatagaattgcttaataccttcaagagtgagctcatccacgcttcacaagaattctcaccaggcttgttcatgaacttgtctagtaatctcaagagcctctgggtggcataagtggcagaggaaaacacccacttggggattttcggtgggcaaaagctggaactatatccataaatctgatctgttgaaaacctctgggagagcatttcatccaggtttcatgccaaaacaaacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="9265" stop="10618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9557" g_stop="10340" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="787" r_length="787" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E588178" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9557" e_stop="10340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTCAAAACAACCACCAAATCCAAAGTTATTTGGACACTTCCAAAAACAAAATAACACAAAAACCAGACAAAATTTGCAGTTGTTCACTCTGAATAAATATATTAGACTACTACTTGTAGGGAAGGAACAATTCCCCCTCACAGAGCCAAAACCACCTCAAAGGAGATCAGCAACATTGGCTGGGAGCTCCTCGATTACGACGTTGTAAAACTTTTGAATGTCAAAAAGCATCCTTTCATCATCCTTGGTAACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTGATGACAAGGGAGACTTGTTGGACGTCAATACCACGAGCAAGGAGATCGGTGGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATAATGATATCCCTAGTGTTCTGATCCATGTCTCCGTGAGTTGCAGATACTGTGTGATCACGACCACGCATTTTGTCAGTGAGCCAATCAACCTTTCGCCTGGTGTTGACAAAGATGACACTCTGGGTGATGGCCAAGGTCTCGTAAAGATCACAAAGTGTTTCAAGTTTCCACTCTTCCTTATCGACGTTGACATAGAATTGCTTAATACCTTCAAGAGTGAGCTCAT-CACGCTTCACGAGAATTCTCA-CTGGCTTGTTCATGAA-TTTTCTAGTAATCTCAAGAGCCTCT-GGTGGCAT-TGTAGCAGA-GAAAACACCCACTT--GGATCTTTGGT-GGCAAAAGCTGGA</genome_strand>
        <mrna_strand>CAAAATTCAA-ACAA---CCAAATCCAAAGTTATTTGGACACTTCCAAAAACAAAATAAC--AAAAACCAGACAAAATTTGCAGTTGTTCACTCTGAATAAATATATTAGACTACTTCCAGTTGGGAAGGAACAATTCCCCCTCACAGAGCCAAAATCACCTCAAAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCGTCATCCTTGGTAACAAAGTTGATTGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGAGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATAATGATATCTCTAGTGTTCTGATCCATGTCTCCGTGAGTTGCAGATACTGTGTGATCACGGCCACGCATTTTATCAGTGAGCCAATCAACCTTTCGCCTGGTGTTAACAAAGATGACACTCTGGGTGATGGCCAAGGTCTCGTAAAGATCACAGAGTGTTTCGAGCTTCCACTCTTCCTTATCGACGTTGACATAGAATTGCTTAATACCTTCAAGAGTGAGCTCATCCACGCTTCACAAGAATTCTCACCAGGCTTGTTCATGAACTTGTCTAGTAATCTCAAGAGCCTCTGGGTGGCATAAGTGGCAGAGGAAAACACCCACTTGGGGATTTTCGGTGGGCAAAAGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418814" ref_strand="-" ref_description="SGN-E418814 [STM-28-K22]">
      <seq>catcacccagagtgtcatctttgttaacaccaggcgaaaggttgattggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacactagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctctcttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgcaatcaactttgttaccaaggatgacgaaaggatgcttttcgacattcaaaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctttgaggtgattttggctctgtgaggggaattgttccttccctactggaagttgtctaatatatttattcaaagtgaacaactgcaaattttgtctggtttttgttattttgtttttggaagtgtccaaataactttgggtttggttgtttgaattttgtttatttgaactaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10426" stop="9265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10126" g_stop="9570" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="594"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E418814" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418814" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10126" e_stop="9570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTT</genome_strand>
        <mrna_strand>CATCACCCAGAGTGTCATCTTTGTTAACACCAGGCGAAAGGTTGATTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCTCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCAATCAACTTTGTTACCAAGGATGACGAAAGGATGCTTTTCGACATTCAAAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGATTTTGGCTCTGTGA-GGGGAATTGTTCCTTCCCTACTGGAAGTTGTCTAATATATTTATTCAAAGTGAACAACTGCAAATTTTGTCTGG-TTTT-TGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGGTTTGGTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355532" ref_strand="+" ref_description="SGN-E355532 [cTOS-25-O12]">
      <seq>gttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctctgtgagggggaattgttccttccctacaagtagtagtctaatatatttattcagagtgaacaactgcaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10608" stop="9330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10308" g_stop="9630" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E355532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10308" e_stop="9630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTT</genome_strand>
        <mrna_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469914" ref_strand="+" ref_description="SGN-E469914 [cSTB-15-H19]">
      <seq>cactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaagctcgaaacactctgtgatctttacgagaccttggccatcacccagagtgtcatctttgttaacaccaggcgaaaggttgattggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacactagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctctcttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgcaatcaactttgttaccaaggatgacgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctttgaggtgattttggctctgtgagggggaattgttccttcccaactggaagtagtctaatatatttattcagagtgaacaactgcaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10516" stop="9330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10216" g_stop="9630" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E469914" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10216" e_stop="9630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTT</genome_strand>
        <mrna_strand>CACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAGCTCGAAACACTCTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTTAACACCAGGCGAAAGGTTGATTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCTCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCAATCAACTTTGTTACCAAGGATGACGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGATTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCAACTGGAAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467478" ref_strand="+" ref_description="SGN-E467478 [cSTB-49-I3]">
      <seq>aaaaatccaagtgggtgttttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattcttgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaagctcgaaacactctgtgatctttacgagaccttggccatcacccagagtgtcatctttgttaacaccaggcgaaaggttgattggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacactagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctctcttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgcaatcaactttgttaccaaggatgacgaaaggatgcttttcgacattcaaaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctttgaggtgattttggctctgtgaggggaattgttcctttcctactggaaagtgtctaatatattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10624" stop="9355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10324" g_stop="9655" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E467478" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10324" e_stop="9655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTA</genome_strand>
        <mrna_strand>AAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAGCTCGAAACACTCTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTTAACACCAGGCGAAAGGTTGATTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCTCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCAATCAACTTTGTTACCAAGGATGACGAAAGGATGCTTTTCGACATTCAAAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGATTTTGGCTCTGTGA-GGGGAATTGTTCCTTTCCTACTGGAAAGTGTCTAATATATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257987" ref_strand="+" ref_description="SGN-E257987 [cLEG-48-J17]">
      <seq>aaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaagtggttttggctctgtgagggggaattgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10464" stop="9383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10164" g_stop="9683" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E257987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10164" e_stop="9683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTT</genome_strand>
        <mrna_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAAGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282485" ref_strand="+" ref_description="SGN-E282485 [cLER-18-E2]">
      <seq>aagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgtcgtaatcgaggagctcccagccaatgttgctgatctcctttgaggtggttttggctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10472" stop="9403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10172" g_stop="9703" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E282485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10172" e_stop="9703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCT</genome_strand>
        <mrna_strand>AAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207553" ref_strand="+" ref_description="SGN-E207553 [cLEC-32-A3]">
      <seq>aaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattcaaaagttttacaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10464" stop="9461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10164" g_stop="9761" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E207553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10164" e_stop="9761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGT</genome_strand>
        <mrna_strand>AAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708139" ref_strand="+" ref_description="SGN-E708139 [FA34DG12]">
      <seq>cgtctggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttaccaaggatgatgaaaggatgctttttgacattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11615" stop="9476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11316" g_stop="11035" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9776" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="860" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E708139" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11316" e_stop="11035"/>
          <exon e_start="10353" e_stop="9776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCA</genome_strand>
        <mrna_strand>CGTCTGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700295" ref_strand="+" ref_description="SGN-E700295 [FA12CH04]">
      <seq>gttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11703" stop="9509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11403" g_stop="11035" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9809" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="914" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E700295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11403" e_stop="11035"/>
          <exon e_start="10353" e_stop="9809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTAC</genome_strand>
        <mrna_strand>GTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707655" ref_strand="+" ref_description="SGN-E707655 [FA33CE02]">
      <seq>cgataagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccagaaaactacctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11760" stop="9565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11461" g_stop="11035" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9865" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="916" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E707655" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11461" e_stop="11035"/>
          <exon e_start="10353" e_stop="9865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCAT</genome_strand>
        <mrna_strand>CGATAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707505" ref_strand="+" ref_description="SGN-E707505 [FA33AG12]">
      <seq>cgataagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactatgacctgccaactcaaccaaaaactacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11760" stop="9568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11461" g_stop="11035" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9868" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="912" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E707505" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11461" e_stop="11035"/>
          <exon e_start="10353" e_stop="9868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTG</genome_strand>
        <mrna_strand>CGATAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCA-AAAACTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305661" ref_strand="+" ref_description="SGN-E305661 [cLEX-14-F6]">
      <seq>ggcacgaggggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccgatctccttgctcgtggtattgacgtccaacaagtctcccttgtcatcaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11499" stop="9598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11200" g_stop="11035" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="10100" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="420" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10099" i_stop="9956" i_length="144">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9955" g_stop="9898" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="478" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E305661" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11200" e_stop="11035"/>
          <exon e_start="10353" e_stop="10100"/>
          <exon e_start="9955" e_stop="9898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTAT</genome_strand>
        <mrna_strand>GGCACGAGGGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAA................................................................................................................................................CACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306529" ref_strand="+" ref_description="SGN-E306529 [cLEX-13-H13]">
      <seq>cgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcgtggtattgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11484" stop="9627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11184" g_stop="11035" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9927" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="577" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E306529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11184" e_stop="11035"/>
          <exon e_start="10353" e_stop="9927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACG</genome_strand>
        <mrna_strand>CGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321368" ref_strand="+" ref_description="SGN-E321368 [cTOB-23-J24]">
      <seq>tttcatggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaaatgcgtggtcgtgatcacacaggatctgcaactcacggagacatggatcagaacactacggatatcattatgagggagttccgatctggctcatctcgtgtgcttatcaccaccgatctccttgctcggggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10658" stop="9630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10353" g_stop="9930" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="437" r_length="424" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E321368" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10353" e_stop="9930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTG</genome_strand>
        <mrna_strand>ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGGATCTGCAACTCACGGAGACATGGATCAGAACACTACGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGGGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457232" ref_strand="+" ref_description="SGN-E457232 [cPRO-1-J12]">
      <seq>agacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctccagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattcttgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaagctcgaaacactctgtgatctttacgagaccttggccatcacccagagtgtcatctttgttaacaccaggcgaaaggttgattggctcactgataaaatgcgtgggcgtgatcacacagtatctgcaactcacggagacatgggatcagaacactagagatatcatttatgaggggagttccgatctgggctcatctcgtgtacttatcacaaccgatctccctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11418" stop="9639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11118" g_stop="11035" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9939" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="503" r_length="419" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E457232" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11118" e_stop="11035"/>
          <exon e_start="10353" e_stop="9939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACAT-GGATCAGAACACTAGGGATATCA-TTATGA-GGGAGTTCCGATCT-GGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTC</genome_strand>
        <mrna_strand>AGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCCAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAGCTCGAAACACTCTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTTAACACCAGGCGAAAGGTTGATTGGCTCACTGATAAAATGCGTGGGCGTGATCACACAGTATCTGCAACTCACGGAGACATGGGATCAGAACACTAGAGATATCATTTATGAGGGGAGTTCCGATCTGGGCTCATCTCGTGTACTTATCACAACCGATCTCCCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446066" ref_strand="+" ref_description="SGN-E446066 [cSTA-19-J12]">
      <seq>ttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttctggatgaagctgatgaaatgctctcaagaggtttcaaggatcagatttatgatattttccaattgctgccaccaaagattcaagttggtgttttctctgccacaatgccaccagaggcccttgaaattactaggaagttcatgaacaagcctgtgaggatccttgtgaagcgtgatgagctcactcttgaaggtatcaagcaattttatgtgaatgttgacaaggaagagtggaagcttgaaactctttgcgatctttacgagaccttagccatcacccagagtgtgatctttgtgaacaccaggcgtaaggttgattggctcactgataagatgcgcagccgtgatcacacagtatctgccactcatggagacatggaccagaacaccagagatatcattatgcgagagttccgatctgggtcatctcgtgtgcttatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17439" stop="9656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11132" g_stop="11035" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.589" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9955" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="497" r_length="399" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E446066" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11132" e_stop="11035"/>
          <exon e_start="10353" e_stop="9955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACC</genome_strand>
        <mrna_strand>TTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTCTGGATGAAGCTGATGAAATGCTCTCAAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATTTTCCAATTGCTGCCACCAAAGATTCAAGTTGGTGTTTTCTCTGCCACAATGCCACCAGAGGCCCTTGAAATTACTAGGAAGTTCATGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAATTTTATGTGAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTACGAGACCTTAGCCATCACCCAGAGTGTGATCTTTGTGAACACCAGGCGTAAGGTTGATTGGCTCACTGATAAGATGCGCAGCCGTGATCACACAGTATCTGCCACTCATGGAGACATGGACCAGAACACCAGAGATATCATTATGCGAGAGTTCCGATCTGGGTCATCTCGTGTGCTTATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344144" ref_strand="+" ref_description="SGN-E344144 [cTOF-16-G20]">
      <seq>ttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtcaacaccaggcgaaaggttgattggctcactgacaaatgcgtggtcgtgatcacacagtatctgcaactcacggagacatggatcagaacactagggatatcattatgagggagttccgatctggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11708" stop="9675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11408" g_stop="11035" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="9975" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="752" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E344144" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11408" e_stop="11035"/>
          <exon e_start="10353" e_stop="9975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCT</genome_strand>
        <mrna_strand>TTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGAC-AAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700676" ref_strand="+" ref_description="SGN-E700676 [FA13DC12]">
      <seq>accatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggccatcacccagagtgtcatctttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11922" stop="9801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11625" g_stop="11554" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="503" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10353" g_stop="10101" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="756" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E700676" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11625" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCA</genome_strand>
        <mrna_strand>ACCATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353535" ref_strand="+" ref_description="SGN-E353535 [cTOS-15-B5]">
      <seq>gttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgatctttacgagaccttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="10608" stop="9827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10308" g_stop="10127" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E353535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>182</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10308" e_stop="10127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGC</genome_strand>
        <mrna_strand>GTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706890" ref_strand="+" ref_description="SGN-E706890 [FA31AH07]">
      <seq>gtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccactgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagagtggaaacttgaaacactttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11917" stop="9844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11617" g_stop="11554" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="495" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10353" g_stop="10144" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="705" r_length="210" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E706890" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11617" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGAT</genome_strand>
        <mrna_strand>GTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCACTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701586" ref_strand="+" ref_description="SGN-E701586 [FA16BE12]">
      <seq>ctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgcccccagaggctcttgagattactagaaaattcatggacaagccagtgagaattctcgtgaagcgtgatgacctcactcttgaaggtattaagcaattctatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12173" stop="9886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="140" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="247" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="678" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10353" g_stop="10186" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="846" r_length="168" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E701586" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTC</genome_strand>
        <mrna_strand>TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCCCCAGAGGCTCTTGAGATTACTAGAAAATTCATGGACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGACCTCACTCTTGAAGGTATTAAGCAATTCTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338658" ref_strand="+" ref_description="SGN-E338658 [cTOE-15-B12]">
      <seq>gaaagacggcaactttctgctctggagttctccagcaaccttgattaccagtttagttgaatgtcaggctcttgttcttgcacccaacccgtgagctggcacaacagattgagaaggttatgcgtgccgcctcggagactatctgggcgtgaaggttcatgccgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattactagaaaattcatgaacaagccagtgagaattctcgtgaagcgtgatgagctcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11675" stop="9912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11375" g_stop="11035" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10353" g_stop="10212" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="489" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E338658" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11375" e_stop="11035"/>
          <exon e_start="10353" e_stop="10212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAA-CTTGATTA-CAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCA-CCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTG-CG-CTCGGAGACTATCTGGGCGTGAAGGTTCATG-CGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTC</genome_strand>
        <mrna_strand>GAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACCTTGATTACCAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCCGCCTCGGAGACTATCTGGGCGTGAAGGTTCATGCCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447751" ref_strand="+" ref_description="SGN-E447751 [cSTS-2-C11]">
      <seq>cggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctccagaggtttcaaagatcagatttatgatatattccagcttttgccaccaaaatccaagtggggtgttttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagatttcttgggaagcgtgatgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12143" stop="9917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11843" g_stop="11786" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="165" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="596" r_length="431" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.589" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10353" g_stop="10217" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="733" r_length="137" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E447751" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11843" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGT-GGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCT</genome_strand>
        <mrna_strand>CGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCCAGAGGTTTCAAAGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAA-ATCCAAGTGGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGATTTCTTGGGAAGCGTGATGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727165" ref_strand="+" ref_description="SGN-E727165 [LA13DF10]">
      <seq>cggtcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgccaccagaggctcttgagattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="9967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13303" g_stop="13168" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.772"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="208" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="315" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="746" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10267" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="833" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E727165" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13303" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTTCCT-AAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACT</genome_strand>
        <mrna_strand>CGGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578567" ref_strand="+" ref_description="SGN-E578567 [85686]">
      <seq>cacatattgtcttcctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatctccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgtttggatgaagctgatgaaatgctctccaggaggtttccanagatcagatttatgatatatttccaggctttttgccaccaaaaaatccaaagtggggttgtttctctgccactatgccaccagaggctcttgagatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="9968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13310" g_stop="13168" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.769"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="214" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="321" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="753" r_length="432" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.83"/>
            <acceptor a_prob="0.589" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10272" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="841" r_length="88" r_score="0.793"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E578567" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13310" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATATTGTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTA-GAGGTTT-CAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATAT-TCCA-GC-TTTTGCCACC-AAAGATCC-AAGT-GGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGA</genome_strand>
        <mrna_strand>CACA-TATTGTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCTCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTG-TTTGGATGAAGCTGATGAAATGCTCTCCAGGAGGTTTCCANAGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTTCCAGGCTTTTTGCCACCAAAAAATCCAAAGTGGGGTTGTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719603" ref_strand="+" ref_description="SGN-E719603 [FC08BD06]">
      <seq>tggcggccaaatcggccgaattgctctttcacacaatatcgttttcctgaactacgcggcgtaaatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcaaatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctacaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="13622" stop="9990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13319" g_stop="13168" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="177" r_length="155" r_score="0.803"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="246" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="353" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="784" r_length="431" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10290" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="848" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E719603" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13319" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCACACAATATTGTCTTCCTAAATT-CCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGC</genome_strand>
        <mrna_strand>GCTCTTTCACACAATATCGTTTTCCTGAACTACGCGGCGTAAATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAAATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485393" ref_strand="+" ref_description="SGN-E485393 [cSTE-17-D20]">
      <seq>ggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctccagaggtttcaaagatcagatttatgatatattccagcttttgccaccaaaatcccaagtgggtgttttctctgccactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="9990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13272" g_stop="13168" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.762"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="176" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="283" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="714" r_length="431" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.589" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10290" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="778" r_length="64" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E485393" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13272" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGC</genome_strand>
        <mrna_strand>GGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCCAGAGGTTTCAAAGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAATCCCAAGTGGGTGTTTTCTCTGCCACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726160" ref_strand="+" ref_description="SGN-E726160 [LA11AA05]">
      <seq>cgtttatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgcccaccaagatccaagtgggtgttttctctgctacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19731" stop="9992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13283" g_stop="13168" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.784"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="187" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="294" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="725" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10292" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="787" r_length="62" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E726160" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13283" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAAT</genome_strand>
        <mrna_strand>CGTTTATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCCACCAAGATCCAAGTGGGTGTTTTCTCTGCTACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705457" ref_strand="+" ref_description="SGN-E705457 [FA27AH01]">
      <seq>caatattgtcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaagatccaagtgggtgttttctctgctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="9994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13308" g_stop="13168" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.794"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="213" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="320" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="751" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10294" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="811" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E705457" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13308" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTGTCTTCCT-AAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACA</genome_strand>
        <mrna_strand>CAATATTGTCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719325" ref_strand="+" ref_description="SGN-E719325 [FC07CA10]">
      <seq>taattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcaccgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12173" stop="10022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="139" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="246" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="677" r_length="431" r_score="0.998"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10353" g_stop="10322" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="709" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E719325" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAAA</genome_strand>
        <mrna_strand>TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCACCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589280" ref_strand="+" ref_description="SGN-E589280 [42851]">
      <seq>ttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctccagaggtttcaaagatcagatttatgatatattccagcttttgccaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13267" g_stop="13168" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.770"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="171" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="278" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="709" r_length="431" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10323" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="740" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E589280" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13267" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGCCACCAA</genome_strand>
        <mrna_strand>TTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCCAGAGGTTTCAAAGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402942" ref_strand="+" ref_description="SGN-E402942 [PPC-9-K23]">
      <seq>caaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcagcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattatagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctccagaggtttcaaggatcagatttatgatatattccagcttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12156" stop="10029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="132" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="239" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="670" r_length="431" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10353" g_stop="10329" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="695" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E402942" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTGC</genome_strand>
        <mrna_strand>TATGGCAGGCTCAGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTATAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCCAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549051" ref_strand="+" ref_description="SGN-E549051 [TUS-66-N15]">
      <seq>aaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggttcaaggatcagatttatgatatattccagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13259" g_stop="13168" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.793"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="163" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="270" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="700" r_length="430" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10330" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="724" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E549051" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13259" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCCAGCTTTTG</genome_strand>
        <mrna_strand>AAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGG-TTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701765" ref_strand="+" ref_description="SGN-E701765 [FA16DE11]">
      <seq>gaactatgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19741" stop="10038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13294" g_stop="13168" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.772"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="198" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="305" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="736" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10353" g_stop="10338" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="752" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E701765" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13294" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
          <exon e_start="10353" e_stop="10338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTCTCCCTTCTACTTAATTTTTTTGCTGTTCTGTTCTGTTAATTCAAAGCAGTATTTGCCTTGTTAGAATTTCTTTTAGTTTCATTGCGTTATATCTAACTAGTCCCCAACACTGAATTGGATGCAAGTAAAAGAACCACCAAGTTCTGACTCTTAACTTGTCCGTATTAATATACGGATATTGTGCCTTCATTGTGTTTTATTTGAAGTCTTGTAGGATTATTATTATTCCCTCCTGCCGTGTTCAATCATCGTAGTCAGGTGCCTATGGACCAGGACACTTGAAGGTCCGTAAGACATGAGAAAATTATCTCTAGCGACTTGTTTGAAGTAGTCTTATATTTTGTGCTATTTATATTTTCATGTCAAATCATAAATGAGTGTACATATGATGTCCTTTGCATATCCACAGCCATTCATTTTGTGGATGTGTCTGGTATTAGAGGCCCAAGATTCATCGCTGTGGCCAAGTCTGGTTGATTTCATGCTGTGTAGGTTCTCACTTTCATTTACAACGTTCAGTTTGCTTGAAATATATGCCAGTTTATGATCAGCTTGTTGGTGAAACTCACCACCACCACAATCACAGCTTTGATGTGCTTTAGTGTCCTTTAACAATTACTGGTCTTTTCTTTGTTTCGATGATGAAGCCTGTCCGCTGACGCAATTATTTTTTTCTAGATTTATGATATATTCC</genome_strand>
        <mrna_strand>GAACTATGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347897" ref_strand="+" ref_description="SGN-E347897 [cTOF-31-G6]">
      <seq>ggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctctctagaggtttcaaggatcagatttatgatatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13263" g_stop="13168" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.792"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="167" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="274" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11035" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="705" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E347897" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13263" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG</genome_strand>
        <mrna_strand>GGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593196" ref_strand="+" ref_description="SGN-E593196 [36420]">
      <seq>atggttttgagaagccatcagctattcagcaaagggagtatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgttggtactggatgaagctgatgaaatgctctccagaggtttcaaggatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="11768" stop="10735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11468" g_stop="11035" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E593196" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11468" e_stop="11035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGG-GCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG</genome_strand>
        <mrna_strand>ATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGAGTATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTGGTACTGGATGAAGCTGATGAAATGCTCTCCAGAGGTTTCAAGGATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724767" ref_strand="+" ref_description="SGN-E724767 [FC25AD10]">
      <seq>gattggcggccaatcggccgaattggaactacgcggcgccatttccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcattttgatgctcgccaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgaaaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggtaattggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14474" g_stop="14448" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.519"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14447" i_stop="13294" i_length="1154">
            <donor d_prob="0.832" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.69"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13293" g_stop="13168" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="155" r_length="129" r_score="0.762"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="224" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="331" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11465" g_stop="11055" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="742" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E724767" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14474" e_stop="14448"/>
          <exon e_start="13293" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTGGTTTATATGACGGAGTGAGGTGTGTTACTAAAACTCACAAACTAAAATTGTATAATACTTTTTAAAGGTTCATTTTCTTTAGTAGTTTTGTGTTAAAATAAAATTATATCTTTTTGTTAGAGATTAGAAAACACTTATATAAAGTAAATCTCATATTCAATTAAAAAAATTTATCAGAAAAAGAGAAAATTTCTACTAGAAAATAGTCCCTTGTCTTTAATATTAGTTTCAAAATAGTCCCATATGTACCACTTTTGAGCTGTTTCAGTCCTTTTAAATTGTCAAAAAATGAGTATATTTTTCAAATATTTATCAGAAACCTAGATAAACCTAGTTATTTAATTTAAATATTGAAAAAAAATTATTAACCATAAACATTAAACACCAAAAGTCTCCATTAAAGTCTTTATATATTGCAACATACTAATAAACTACATACTACAAAAAAGTAAAAACATAACAATCATTAATCCTAAAAATTATCCCATAATTTTAAATCGACCAAAAAAAACAAATATAAATTACAATATAATGTGAATTTCTCATGAATATTTTCTACTATTTTAAATTTTAATTTGTTGATTAAAATTTATATTCTACTATTTCAAAATTAAATTGTGAAAAATGACAGAAATCTCGCCTTTAAGTTTTTTTATTACCATTATTCCCTATTAGTTTTACAAATTTTCAAAATCCCTTATTTTTCACGCATCAAATTAATGTATCAGCGCATCAAATTAATGTATCTCGTGTATCAGATTAATGTATTTCCCACATCAGATTTGTGTATCAGGTATAATATGTAATGCATCTTACTTAATGATTAATGTATCTCGCGCATCAGATTAATGTATCAGTTTTTATATTACTGTATCAGTTTGAGGAATTTCTGTAATTATAAACTTATAAGTATGCGATTTAAGTCGTTTGCCCAAATTAATAATTATAATTTAGTAAATATTTTACTAAGACCAAAAAATGCTAATAACTTTTAATAAATTATGAAAATATTTTTTAAAACTTACCACCAAAATATAATAGGTTAGGGAAATTTATTTGAATTTTTTTTCTTTTTTTATTTTCAACTCAAATTTACATAAGGAATTTGGAAACATATAAAGACAAAACATAACATAATTCATAAAACTCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAG-TTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCT</genome_strand>
        <mrna_strand>GATTGGCGGCCAATCGGCCGAATTG-G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACGCGGCGCCATTTCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCATTTTGATGCTCGCCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAAAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTAATTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449050" ref_strand="+" ref_description="SGN-E449050 [cSTS-5-O15]">
      <seq>gtcttcctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagagtttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccangcccgtgtcttgacatgttgcgcagacagtctcttcgccccgacacatcaagatgtttgttttggatgaagctgatgaaatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13301" g_stop="13168" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.769"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="206" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="313" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11055" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="723" r_length="410" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E449050" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13301" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGG-CCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCT</genome_strand>
        <mrna_strand>GTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAGTTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCANGCCCGTGTC-TTGACATGTTGCGCAGACAGTCTCTTCGCCCCGA-CACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462167" ref_strand="+" ref_description="SGN-E462167 [cPRO-10-H12]">
      <seq>ctctcacacatattgtcttcctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcagcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattatagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgatgaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13316" g_stop="13168" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.792"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="220" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="327" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11058" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="735" r_length="408" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E462167" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13316" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCACACAATATTGTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGC</genome_strand>
        <mrna_strand>CTCTCACAC-ATATTGTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCAGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTATAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458820" ref_strand="+" ref_description="SGN-E458820 [cPRO-32-D1]">
      <seq>cacatattgtcttcctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13310" g_stop="13168" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.776"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="214" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="321" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11091" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="696" r_length="375" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E458820" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13310" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATATTGTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCA</genome_strand>
        <mrna_strand>CACA-TATTGTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485399" ref_strand="+" ref_description="SGN-E485399 [cSTE-17-F20]">
      <seq>acatattgtcttcctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcatgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccccgaccacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13309" g_stop="13168" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.775"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="214" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="321" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11091" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="696" r_length="375" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E485399" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13309" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATATTGTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCC-TTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCA</genome_strand>
        <mrna_strand>AC-ATATTGTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCATGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450696" ref_strand="+" ref_description="SGN-E450696 [cSTS-10-K9]">
      <seq>aaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcagcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattatagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctcttcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13259" g_stop="13168" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.783"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="163" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="270" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11102" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="634" r_length="364" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E450696" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13259" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCC</genome_strand>
        <mrna_strand>AAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCAGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTATAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565663" ref_strand="+" ref_description="SGN-E565663 [4102]">
      <seq>gttttaggaaaaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaattttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtatagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgtacatgtagtggttggtactccaggccgtgtctttgacatgttgcgcagacagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13269" g_stop="13174" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.792"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13173" i_stop="11855" i_length="1319">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="165" r_length="67" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="271" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11109" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="628" r_length="357" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E565663" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E565663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13269" e_stop="13174"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTC</genome_strand>
        <mrna_strand>GTTTTAGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--AAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGA-ATTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTATAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTACATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307043" ref_strand="+" ref_description="SGN-E307043 [cLEY-15-K7]">
      <seq>aaagctgcagtctttacaaaccctaattctcaagaatccggtttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttcagagtggtgttcatgtggtagttggtactccaggccgtgtctttgacatgttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13258" g_stop="13168" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.769"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="162" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="269" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11120" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="615" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E307043" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13258" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCG</genome_strand>
        <mrna_strand>AAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCGGTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558111" ref_strand="+" ref_description="SGN-E558111 [17016]">
      <seq>ggttttaggaaaaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagaatctctctttaacaatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcagagtggtgttcatgtagtggttggtactccaggccgtgtctttgacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13270" g_stop="13168" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.757"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.75"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="175" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="282" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11124" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="624" r_length="342" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E558111" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13270" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCA-AATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGT</genome_strand>
        <mrna_strand>GGTTTTAGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGAATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGTGTTCATGTAGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597377" ref_strand="+" ref_description="SGN-E597377 [40880]">
      <seq>gtcttcctgaactccgcggcgtagatccgaggagttttaggaaaaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaattgttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgtggggggtacagtgtccgtgaagatcagcgtatccttcagagtgggggttcatgtagtggttggtactccagggcgtgtctttgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13301" g_stop="13168" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.776"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="206" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="313" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11126" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="653" r_length="340" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E597377" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13301" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGT-GGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACAT</genome_strand>
        <mrna_strand>GTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTAGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTGTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTGGGGGGTA-CAGTGTCCGTGAAGATCAGCGTATCCTTCAGAGTGGGGGTTCATGTAGTGGTTGGTACTCCAGGGCGTGTCTTTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567728" ref_strand="+" ref_description="SGN-E567728 [11899]">
      <seq>ggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatctcctttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaggaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttcaagtggtgtcatgtagtggttggtactccaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13272" g_stop="13168" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="176" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="283" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11140" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="607" r_length="324" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E567728" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13272" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGC</genome_strand>
        <mrna_strand>GGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCTCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAGGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTCA-AGTGGTG-TCATGTAGTGGTTGGTACTCCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481729" ref_strand="+" ref_description="SGN-E481729 [cSTD-19-E14]">
      <seq>aaaaaactctctccacatattgtcttcctgaactccgcggcgtagatccgaggagttttaggaaaaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13324" g_stop="13174" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.788"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13173" i_stop="11855" i_length="1319">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="219" r_length="67" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="326" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11175" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="617" r_length="291" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E481729" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13324" e_stop="13174"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCTCTTTCACACAATATTGTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTC</genome_strand>
        <mrna_strand>AAAAAACTCTCTC-CACA-TATTGTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTAGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--AAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320499" ref_strand="+" ref_description="SGN-E320499 [cTOB-22-E5]">
      <seq>cgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaggatcagcgtatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13275" g_stop="13168" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.787"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="179" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="286" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11175" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="577" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E320499" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13275" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTC</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482075" ref_strand="+" ref_description="SGN-E482075 [cSTD-20-D10]">
      <seq>gtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttgctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13269" g_stop="13168" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.765"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="173" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="280" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11175" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="571" r_length="291" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E482075" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13269" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTC</genome_strand>
        <mrna_strand>GTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTGCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481100" ref_strand="+" ref_description="SGN-E481100 [cSTD-16-D11]">
      <seq>ctgaactccgcggcgtagatccgaggagttttaggaaaaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtgaagatcagcgtatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19744" stop="10877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13295" g_stop="13168" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.766"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="200" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="307" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11177" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="596" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E481100" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13295" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCT</genome_strand>
        <mrna_strand>CTGAACTCCGCGGCGTAGATCCGAGGAGTTTTAGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479382" ref_strand="+" ref_description="SGN-E479382 [cSTD-9-N9]">
      <seq>ttctcagtttgatgctcgtcaattcgatgccgaaaatgacggagctaccttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattatagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgtccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12130" stop="10893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11830" g_stop="11786" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.845" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="155" r_length="109" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11465" g_stop="11193" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="428" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E479382" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11830" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAGTTTGATGCTCGTCAATTCGATG-CGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGA-CTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAG-AGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTG</genome_strand>
        <mrna_strand>TTCTCAGTTTGATGCTCGTCAATTCGATGCCGAAAATGACGGAGCT.............................................................................................................................ACCTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTATAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308980" ref_strand="+" ref_description="SGN-E308980 [cLEY-23-F19]">
      <seq>atccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttccctttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggtaccagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19726" stop="10898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13278" g_stop="13168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.793"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="289" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11198" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="558" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E308980" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13278" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCC-TTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGT</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440833" ref_strand="+" ref_description="SGN-E440833 [cSTA-27-O1]">
      <seq>cctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19745" stop="10903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13296" g_stop="13168" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.760"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="201" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="308" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11203" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="571" r_length="263" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E440833" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13296" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACC</genome_strand>
        <mrna_strand>CCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305351" ref_strand="+" ref_description="SGN-E305351 [cLEX-15-H18]">
      <seq>tcttcctgaactacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggagagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13300" g_stop="13168" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.782"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="205" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="312" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11205" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="573" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E305351" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13300" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCT-AAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTA</genome_strand>
        <mrna_strand>TCTTCCTGAACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAGAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443515" ref_strand="+" ref_description="SGN-E443515 [cSTA-38-B8]">
      <seq>ctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19744" stop="10906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13295" g_stop="13168" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.758"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="200" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="307" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11206" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="567" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E443515" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13295" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGT</genome_strand>
        <mrna_strand>CTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304281" ref_strand="+" ref_description="SGN-E304281 [cLEX-12-E5]">
      <seq>actacgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcacgctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcgctcggagactatctgggcgtgaaggttcatgcgtgtgttgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19740" stop="10906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13292" g_stop="13168" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.784"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="196" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="303" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11206" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="563" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E304281" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13292" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCC-AATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGT</genome_strand>
        <mrna_strand>ACTACGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCACGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483436" ref_strand="+" ref_description="SGN-E483436 [cSTE-9-K20]">
      <seq>ggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaaggttcatgcgtgtgttgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13272" g_stop="13168" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.762"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="176" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="283" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11206" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="543" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E483436" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13272" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGT</genome_strand>
        <mrna_strand>GGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAGGTTCATGCGTGTGTTGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486049" ref_strand="+" ref_description="SGN-E486049 [cSTE-20-D10]">
      <seq>gtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttgctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccaccacgcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttaattgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcgcaacagattgagaaagttatgcgtgcactcggtgactatctgggcgtgaaagttcatgcgtgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13269" g_stop="13168" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.765"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="173" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="280" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11213" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="533" r_length="253" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E486049" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13269" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGT</genome_strand>
        <mrna_strand>GTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTGCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCACCACGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAATTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCGCAACAGATTGAGAAAGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAAGTTCATGCGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486739" ref_strand="+" ref_description="SGN-E486739 [cSTE-23-I11]">
      <seq>atccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttgctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgtgaaggttcatgcgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19726" stop="10914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13278" g_stop="13168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.766"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="289" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11214" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="541" r_length="252" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E486739" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13278" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTG</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTGCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGTGAAGGTTCATGCGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322765" ref_strand="+" ref_description="SGN-E322765 [cTOB-30-C9]">
      <seq>cgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatcgggaactggaaagacggcaactttcttgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacacagattgagaaagttatgcgtgcgctcggagactatctgggcgtgaggttcatgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13275" g_stop="13168" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.787"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="179" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="286" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11217" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="534" r_length="248" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E322765" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13275" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTC-TGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGT</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCAC-ACAGATTGAGAAAGTTATGCGTGCGCTCGGAGACTATCTGGGCGTG-AGGTTCATGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576557" ref_strand="+" ref_description="SGN-E576557 [59793]">
      <seq>cacatattgtcttcctgaactccgcggcgtagatccgaggagttttaggaaaaaagctgcagtctttacaaaccctaattctcaaaaatcccctttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagctggcacaacagattgagaaggttatgcgtgcactcggtgactatctgggtgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="10927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13310" g_stop="13168" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.783"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="214" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="321" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11227" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="560" r_length="239" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E576557" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13310" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATATTGTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAG</genome_strand>
        <mrna_strand>CACA-TATTGTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTAGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437310" ref_strand="+" ref_description="SGN-E437310 [cSTA-3-I14]">
      <seq>cctcgtgccggtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttgctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgcgtgcactcggtgactatctgggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19739" stop="10931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13291" g_stop="13168" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.726"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="196" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="303" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11231" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="538" r_length="235" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E437310" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13291" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCCGGCG-TAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACA-ACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGT</genome_strand>
        <mrna_strand>CCTCGTGCCGGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTGCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGCGTGCACTCGGTGACTATCTGGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440835" ref_strand="+" ref_description="SGN-E440835 [cSTA-27-O5]">
      <seq>cctgaactccgcggcgtagatccgaggagtttttggaaaggagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaagcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaacagattgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19745" stop="10964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13296" g_stop="13168" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.744"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="201" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="308" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11264" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="510" r_length="202" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E440835" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13296" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAA-CCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAA</genome_strand>
        <mrna_strand>CCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAGGAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAAGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442561" ref_strand="+" ref_description="SGN-E442561 [cSTA-34-A5]">
      <seq>cgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttgctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttgcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19731" stop="10974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13283" g_stop="13168" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.767"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="187" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="294" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11274" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="486" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E442561" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13283" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAAC</genome_strand>
        <mrna_strand>CGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTGCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308891" ref_strand="+" ref_description="SGN-E308891 [cLEY-23-H1]">
      <seq>atccgaggagtttttggaaaaaagctgcagtctttacaaacccgtgttctcaagaatcccctttttctcaaatcttcagatctctctttaacaatcttcttgttagctacaagtatggcaggctcggcaccagagggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagattttttcacatcatatgatgaggtttatgacagctttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttccctttttgcaagggccttgatgttatccagcatgcacaatcgggaactggaaagacggcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcacgctcttgttcttgcaccaacccctgagctggcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19726" stop="10974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13278" g_stop="13168" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.775"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="182" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="289" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11274" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="482" r_length="193" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E308891" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13278" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCC-TTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAAC</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCGTGTTCTCAAGAATCCCCTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTGTTAGCTACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTTGCAAGGGCCTTGATGTTATCCAGCATGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCACGCTCTTGTTCTTGCACCAACCCCTGAGCTGGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442612" ref_strand="+" ref_description="SGN-E442612 [cSTA-34-A4]">
      <seq>cgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttgctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggagttctccagcaacttgattacagtttagttgaatgtcaggctcttgttcttgcaccaacccgtgagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19731" stop="10982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13283" g_stop="13168" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.767"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="187" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="294" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11280" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="480" r_length="186" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E442612" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13283" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGG</genome_strand>
        <mrna_strand>CGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTGCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439048" ref_strand="+" ref_description="SGN-E439048 [cSTA-10-P19]">
      <seq>gtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgctctggtgttctccagcaacttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19730" stop="11030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13282" g_stop="13168" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.765"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="186" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="293" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11330" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="429" r_length="136" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E439048" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13282" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTA</genome_strand>
        <mrna_strand>GTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGTGTTCTCCAGCAACTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445885" ref_strand="+" ref_description="SGN-E445885 [cSTA-19-K23]">
      <seq>cctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttttctcaaatcttcagatctctctttaacaatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctatggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacggcaactttctgctctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19745" stop="11049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13296" g_stop="13168" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.760"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="202" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="309" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11349" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="426" r_length="117" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E445885" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13296" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCT-AAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAG</genome_strand>
        <mrna_strand>CCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTTTCTCAAATCTTCAGATCTCTCTTTAACAATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443599" ref_strand="+" ref_description="SGN-E443599 [cSTA-39-C21]">
      <seq>attgtcttcctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcatgcacaatctggaactggaaagacagcaactttctgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="11052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13304" g_stop="13168" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.774"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="209" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="316" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11352" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="430" r_length="114" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E443599" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13304" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTCTTCCTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTG</genome_strand>
        <mrna_strand>ATTGTCTTCCTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCATGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438125" ref_strand="+" ref_description="SGN-E438125 [cSTA-6-A4]">
      <seq>aggttctcagttggatgctcgtcaattcgatgcggaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgttatccagcaggcacaatctggaactggaaagacagcaactttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="12132" stop="11056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11833" g_stop="11786" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="156" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11465" g_stop="11356" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="266" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E438125" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11833" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTCTCAGTTTGATGCTCGTCAATTCGATGC-GAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGC</genome_strand>
        <mrna_strand>AGGTTCTCAGTTGGATGCTCGTCAATTCGATGCGGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGAACTGGAAAGACAGCAACTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443907" ref_strand="+" ref_description="SGN-E443907 [cSTA-40-L23]">
      <seq>gggctgcaggaattcggcacgaggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgcaagggccttgatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19736" stop="11100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14965" g_stop="14946" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14945" i_stop="13289" i_length="1657">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13288" g_stop="13168" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="142" r_length="123" r_score="0.760"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="211" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="318" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11465" g_stop="11400" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="384" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E443907" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14965" e_stop="14946"/>
          <exon e_start="13288" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTCCAGACTTTGTGGTTATATTCTTTTAAACATAGAAGGTTGTGGTTTATGTGACCTTCGGGTGGCTCAGTTGTTTGAGCTTGAGACTTTCGTGTTGGAGGTCTCAAGTTCGAAACCCCTTTCCAGCTAAAGCAAGGGGTATGTCTTCTGGATCGAGCTTGTCGCATCAAGCTTGCCTAGTGGTTTGCGAATTATTGCATAGGAACGAGAGTTTTATTTTGTGCGCATTTAAAGAATAGTAACTGCGGGTTTTCCTTGTCATCAAAAAGAAAATTGTGGTTTATATGACGGAGTGAGGTATGGACTTTCATGTTGGAGTAATCAAGTTCGAAACCCCTTCCCAGCTAAAGCAAGGGGTTTGTCTTCTGGGTCGAGCTTGTCGCACCAAGCTTGCCTAGTGATTTGCGAGTTATTGCATATGAGAGGAAGTTTTATTCTGTGTGCACTCAAAGGATAGTGACTGCGGGTTTTCTTTGTTATCAGAAAGAAAATTGTGGTTTATATGACGGAGTGAGGTGTGTTACTAAAACTCACAAACTAAAATTGTATAATACTTTTTAAAGGTTCATTTTCTTTAGTAGTTTTGTGTTAAAATAAAATTATATCTTTTTGTTAGAGATTAGAAAACACTTATATAAAGTAAATCTCATATTCAATTAAAAAAATTTATCAGAAAAAGAGAAAATTTCTACTAGAAAATAGTCCCTTGTCTTTAATATTAGTTTCAAAATAGTCCCATATGTACCACTTTTGAGCTGTTTCAGTCCTTTTAAATTGTCAAAAAATGAGTATATTTTTCAAATATTTATCAGAAACCTAGATAAACCTAGTTATTTAATTTAAATATTGAAAAAAAATTATTAACCATAAACATTAAACACCAAAAGTCTCCATTAAAGTCTTTATATATTGCAACATACTAATAAACTACATACTACAAAAAAGTAAAAACATAACAATCATTAATCCTAAAAATTATCCCATAATTTTAAATCGACCAAAAAAAACAAATATAAATTACAATATAATGTGAATTTCTCATGAATATTTTCTACTATTTTAAATTTTAATTTGTTGATTAAAATTTATATTCTACTATTTCAAAATTAAATTGTGAAAAATGACAGAAATCTCGCCTTTAAGTTTTTTTATTACCATTATTCCCTATTAGTTTTACAAATTTTCAAAATCCCTTATTTTTCACGCATCAAATTAATGTATCAGCGCATCAAATTAATGTATCTCGTGTATCAGATTAATGTATTTCCCACATCAGATTTGTGTATCAGGTATAATATGTAATGCATCTTACTTAATGATTAATGTATCTCGCGCATCAGATTAATGTATCAGTTTTTATATTACTGTATCAGTTTGAGGAATTTCTGTAATTATAAACTTATAAGTATGCGATTTAAGTCGTTTGCCCAAATTAATAATTATAATTTAGTAAATATTTTACTAAGACCAAAAAATGCTAATAACTTTTAATAAATTATGAAAATATTTTTTAAAACTTACCACCAAAATATAATAGGTTAGGGAAATTTATTTGAATTTTTTTTCTTTTTTTATTTTCAACTCAAATTTACATAAGGAATTTGGAAACATATAAAGACAAAACATAACATAATTCATAAAACTCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTA</genome_strand>
        <mrna_strand>GGGCTGCAGGAATTC-GGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473198" ref_strand="+" ref_description="SGN-E473198 [cSTB-31-B15]">
      <seq>ctgaactccgcggcgtagatccgaggagtttttggaaaaaagctgcagtctttacaaaccctaattctcaaaaatccccttttgctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagcaaaggggcatcgttcccttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19744" stop="11116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13295" g_stop="13168" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.758"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="200" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="307" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11416" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="357" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E473198" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13295" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTCC-CGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGC</genome_strand>
        <mrna_strand>CTGAACTCCGCGGCGTAGATCCGAGGAGTTTTTGGAAAAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTGCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475629" ref_strand="+" ref_description="SGN-E475629 [cSTB-41-A4]">
      <seq>aaaagctgcagtctttacaaaccctaattctcaaaaatccccttttcctcaaatcttcagatctctctttaactatcttcttattagctataagtatggcaggctcggcaccagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacggagctacttggtactgaacaacaagaatttttcacatcatatgatgaggtttatgacagttttgatgccatgggtttgcaagaaaaccttctgagaggcatctatgcctacggttttgagaagccatcagctattcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="11139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13259" g_stop="13168" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.761"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313">
            <donor d_prob="0.000" d_score="0.73"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11854" g_stop="11786" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="163" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11660" g_stop="11554" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="270" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.339" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11465" g_stop="11439" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="297" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E475629" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13259" e_stop="13168"/>
          <exon e_start="11854" e_stop="11786"/>
          <exon e_start="11660" e_stop="11554"/>
          <exon e_start="11465" e_stop="11439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTTCCGTCTTTAC-AACCCCAATTCTAAAAAACCCCCTTTTTCCCAAAT-TTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTTTTTGTGTGGTTCAACGTTTTTGGTTTTGATTTTTATGTGTTTTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGTCAGTTGGTTTTTGTGTGGTTCAACGTTTTGGTTTTTGATTATTAGGTGTGGTTTTAGTTCCTTGCTTCACCATTTTGATGGTATTTTGAGTTTTTGATGTTCTGTCGGCATAAAGTAGTGATTTTTCAGACAGTTTGGTATTATGGAGTATGTTTCTTTGCTCTTCTCTAATTTGGATTGGTTCTGATTTGTATATGCTTGTTTTAGTTTCGATGGTTTTTGAGTTTTTGATGATTCATTGGCACAAAGTAGTGATTTTTCAGACTGTTGGGTTTTGTGGGGTTCCCGTGCTTGCTCTTCACTAATTTGGATTGGTTCTGATTTGTATATGTTTTAGTTTTGATGGTTTTTGAGTTTTTGATGATTCATCGGCACAAAGTAGTGATCTTTCAGACTGTTGGGTTTTGTGGGGTTCACGTGCTTATTCTTCACTATTCTCGGTTGGTTTGATTTGTAGGTCCGTTTTAGCATCTCCTCCAACACTCTCATTCTCGACTTTTGTAACCTTGACTCTGTGTCAAATAGCTATAGAAATAGGGTTGACCTGTCTGGCAAGTAGTCAAACAGTTCTTTCTATCTGCTTTCTGCTCCTTTTACTTCCTCAGGAAAGAAAAAGTAAAAGGAGAAATGATGTATATTGTCTCTTGTGCATGCCCCTCATGAATGAAGGAAGAACAGATAATATTATTGATATCTGGTGAATAAATTTTATTTTTGAAGTGTTTTAGGCCTTAAACTACCTTTTGTTATTATCTTATGTGCCATGGAGTCCAGTTTTGACCTTCCCTTGTTGTCTTCTTCATGATGTTTAATGAATGTCCATGTGACTGATAAGATTTGTTATTTTTTATTTTGAGAATTCTAGTTTTGATAATTAGTTAATAGTACTTGGTGAACAAATTATTTCTTTTGAGTCTTTGATGAAGTGTTTTGGGTCTCAAGATAATGTCATAGAGTTAGGCTTCTACCTTCACTGTTTATCGTCTACTATATCTTCTGATAGGATTTGTTATTCACTTGTTGAGATTGAGGCATAATTAACTGATTTATCTGCTTTTTTGTTATATTCTCTGCAGTATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCTGTAAGTTATCTCTTCTCCATCCTGTACTGAGGTTATTGATCATCAGTTTCTGCTGATATTTGTCCTCTAACCTTTTGCCATTGATTTGATTGACTTTTGTGGTTGTTTTGATATGCCAAAAACAGACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATGGTAAAATTGACATCTCCTTATATTCTGGTTTCCTTTCCTCAATTCTCAGATTTTACAGGCACTGAACAGTGTTTTGAATTTCTTGAAGGTTTTGAGAAGCCATCAGCTATTCAGC</genome_strand>
        <mrna_strand>AAAAGCTGCAGTCTTTACAAACCCTAATTCTCAAAAATCCCCTTTTCCTCAAATCTTCAGATCTCTCTTTAACTATCTTCTTATTAGCTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCAGGCTCGGCACCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT.............................................................................................................................ACTTGGTACTGAACAACAAGAATTTTTCACATCATATGATGAGGTTTATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTACG........................................................................................GTTTTGAGAAGCCATCAGCTATTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711255" ref_strand="+" ref_description="SGN-E711255 [FB01BG10]">
      <seq>cgtgtttatccaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaacctttttttttttttttgcaaattttgttgggtttgccattttatacctttaaagtacccaaataactttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccggggggggggccggaacccttttcccccttaggggggggtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15810" stop="2683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15511" g_stop="15074" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15073" i_stop="13168" i_length="1906">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.521" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13167" g_stop="13077" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="529" r_length="91" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E711255" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15511" e_stop="15074"/>
          <exon e_start="13167" e_stop="13077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACC-TTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATTATCTGTTTTTTTCTCATTTTGATGCTATATTTCATATTTGTACTCCAGACTTTGTGGTTATATTCTTTTAAACATAGAAGGTTGTGGTTTATGTGACCTTCGGGTGGCTCAGTTGTTTGAGCTTGAGACTTTCGTGTTGGAGGTCTCAAGTTCGAAACCCCTTTCCAGCTAAAGCAAGGGGTATGTCTTCTGGATCGAGCTTGTCGCATCAAGCTTGCCTAGTGGTTTGCGAATTATTGCATAGGAACGAGAGTTTTATTTTGTGCGCATTTAAAGAATAGTAACTGCGGGTTTTCCTTGTCATCAAAAAGAAAATTGTGGTTTATATGACGGAGTGAGGTATGGACTTTCATGTTGGAGTAATCAAGTTCGAAACCCCTTCCCAGCTAAAGCAAGGGGTTTGTCTTCTGGGTCGAGCTTGTCGCACCAAGCTTGCCTAGTGATTTGCGAGTTATTGCATATGAGAGGAAGTTTTATTCTGTGTGCACTCAAAGGATAGTGACTGCGGGTTTTCTTTGTTATCAGAAAGAAAATTGTGGTTTATATGACGGAGTGAGGTGTGTTACTAAAACTCACAAACTAAAATTGTATAATACTTTTTAAAGGTTCATTTTCTTTAGTAGTTTTGTGTTAAAATAAAATTATATCTTTTTGTTAGAGATTAGAAAACACTTATATAAAGTAAATCTCATATTCAATTAAAAAAATTTATCAGAAAAAGAGAAAATTTCTACTAGAAAATAGTCCCTTGTCTTTAATATTAGTTTCAAAATAGTCCCATATGTACCACTTTTGAGCTGTTTCAGTCCTTTTAAATTGTCAAAAAATGAGTATATTTTTCAAATATTTATCAGAAACCTAGATAAACCTAGTTATTTAATTTAAATATTGAAAAAAAATTATTAACCATAAACATTAAACACCAAAAGTCTCCATTAAAGTCTTTATATATTGCAACATACTAATAAACTACATACTACAAAAAAGTAAAAACATAACAATCATTAATCCTAAAAATTATCCCATAATTTTAAATCGACCAAAAAAAACAAATATAAATTACAATATAATGTGAATTTCTCATGAATATTTTCTACTATTTTAAATTTTAATTTGTTGATTAAAATTTATATTCTACTATTTCAAAATTAAATTGTGAAAAATGACAGAAATCTCGCCTTTAAGTTTTTTTATTACCATTATTCCCTATTAGTTTTACAAATTTTCAAAATCCCTTATTTTTCACGCATCAAATTAATGTATCAGCGCATCAAATTAATGTATCTCGTGTATCAGATTAATGTATTTCCCACATCAGATTTGTGTATCAGGTATAATATGTAATGCATCTTACTTAATGATTAATGTATCTCGCGCATCAGATTAATGTATCAGTTTTTATATTACTGTATCAGTTTGAGGAATTTCTGTAATTATAAACTTATAAGTATGCGATTTAAGTCGTTTGCCCAAATTAATAATTATAATTTAGTAAATATTTTACTAAGACCAAAAAATGCTAATAACTTTTAATAAATTATGAAAATATTTTTTAAAACTTACCACCAAAATATAATAGGTTAGGGAAATTTATTTGAATTTTTTTTCTTTTTTTATTTTCAACTCAAATTTACATAAGGAATTTGGAAACATATAAAGACAAAACATAACATAATTCATAAAACTCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CGTGTTTATC-CAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTTGCAAATTTTGTTGGGTTTGCCATTTTATACCTTTAAAGTACCCAAATAACTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGGGCCGGAACCCTTTTCCCCCTTAGGGGGGGGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259863" ref_strand="+" ref_description="SGN-E259863 [cLEG-51-D22]">
      <seq>tttaatccaactaaaagctttaccttccatagggaaatagatcaattaaacaattcaaacaacaccaaatacaaagttatttggatactttaaaggtataaaatgacaaaccaaacaaaatttgcaaaaaaaaaaaaaaggtttcatttgaatcaggaaaggaactggtgctgtggcaaaccatggctaccagcatttcctaattccaagtctagtacaaactgatactaaatctaagaataaatataccaaaaatcgccttagaggagatcagcaacattggctgggagctcctcaattacgacgttgtaaaacttctgtatgtcaaaaagcatcctttcatcatccttggtgacaaagttgatagcaacacccttccttccaaatcgtccactacgaccaatacgatgcaggtagttttctggttgagttggcaggtcatagttaataacaagggagacttgttggacatcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="14704" stop="15779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15002" g_stop="15479" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E259863" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15002" e_stop="15479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATAC</genome_strand>
        <mrna_strand>TTTAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262796" ref_strand="+" ref_description="SGN-E262796 [cLEG-63-N2]">
      <seq>tttaatccaactaaaagctttaccttccatagggaaatagatcaattaaacaattcaaacaacaccaaatacaaagttatttggatactttaaaggtataaaatgacaaaccaaacaaaatttgcaaaaaaaaaaaaaagggttcatttgaatcaggaaaagaactggtgctgtggcaaaccatggctaccagcatttcctaatttcaagtctagtacaaactgatactaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="14704" stop="15534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15002" g_stop="15234" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E262796" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15002" e_stop="15234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAAT</genome_strand>
        <mrna_strand>TTTAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGGTTCATTTGAATCAGGAAAAGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTTCAAGTCTAGTACAAACTGATACTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227006" ref_strand="+" ref_description="SGN-E227006 [cLED-1-D24](-)">
      <seq>aacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaaccttttttttttttttgcaaattttgtttggtttgtcattttatacctttaaagtatccaaataactttgtatttggtgttgtttgaattgtttaattgatctatttccctatggaaggtaaagcttttagttggattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15767" stop="14704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15467" g_stop="15005" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="503"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E227006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15467" e_stop="15005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</genome_strand>
        <mrna_strand>AACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348253" ref_strand="+" ref_description="SGN-E348253 [cTOF-27-G24]">
      <seq>tgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaaccttttttttttttttgcaaattttgtttggtttgtcattttatacctttaaagtatccaaataactttgtattttggtgttgtttgaattgtttaattgatctattttcctatgggaagtaaagcttttagttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15991" stop="14707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15691" g_stop="15007" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E348253" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15691" e_stop="15007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTA-TTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGA</genome_strand>
        <mrna_strand>TGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTTCCTATGGGAAGTAAAGCTTTTAGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351894" ref_strand="+" ref_description="SGN-E351894 [cTOS-8-H5]">
      <seq>tcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgatttttggtatatttattcttagatttagtatcagtttgtactagacttggaattaggaaatgctggtagccatggtttgccacagcaccagttcctttcctgattcaaatgaaacctttttttttttttgcaaattttgtttggtttgtcattttatacctttaaagtatccaaataactttgtatttggtgttgtttgaattgtttaattgatctatttccctatggaaggtaaagcttttagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="15730" stop="14709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15430" g_stop="15008" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E351894" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15430" e_stop="15008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGG</genome_strand>
        <mrna_strand>TCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACC-TTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558011" ref_strand="+" ref_description="SGN-E558011 [16899]">
      <seq>taaaagctttacttccatagggaaatagataaattaaacaattcaaacaataccaaatccaaagttatttggatgcttaaagatataaaatgacaaaccaaacaaaatttgcaaaagttgattctagaagtttcatttgaatcaggaaagtaactggtgctgtggcaaaccatagtaccagcatttcctaattccaagtctagtacaaactgaaactaaatctaagaaaaaatataccaaaatcgccttaaaggagatcagcaacattggctgggagctcctcaattacgacgttgtaaaacttctgtatgtcaaaaagcatcctttcgtcatccttggtgacaaagttgatagcaacacccttccttccaaatcgtccactacgaccaatacgatgcaggtagttttctggttgagttggcaggtcatagttaataacaagagagacttgttggacatcaataccacgagcaaggagatcggttgtgataagcacacgagatgagccagatcggaactccctcataatgatatctcttgtgtnctgatccatgtctccgtgagttgcagatactgtgtgatcacgggcacgcaatttatcagtgagccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="14713" stop="15926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15013" g_stop="15626" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E558011" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15013" e_stop="15626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAA--AAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATGATGATATCTCTTGTGTTCTGATCCATGTCTCCATGAGTTGCAGATACTGTGTGGTCACGTCCACGCATTTTATCAGTGAGCCAGT</genome_strand>
        <mrna_strand>TAAAAGCTTTA-CTTCCATAGGGAAATAGATAAATTAAACAATTCAAACAATACCAAATCCAAAGTTATTTGGATGC-TTAAAGATATAAAATGACAAACCAAACAAAATTTGCAAAAGTTGATTCTAGAAGTTTCATTTGAATCAGGAAAGTAACTGGTGCTGTGGCAAACCATAG-TACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGAAACTAAATCTAAGAAAAAATATACC-AAAATCGCCTTAAAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCGTCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGAGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATAATGATATCTCTTGTGTNCTGATCCATGTCTCCGTGAGTTGCAGATACTGTGTGATCACGGGCACGCAATTTATCAGTGAGCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E562003" ref_strand="+" ref_description="SGN-E562003 [17248]">
      <seq>taaaagcttacttccatagggaaatagataaattacacaattcaaacaatacccaaatccaaagttatttggatgcttaaagatataaaatgacaaaccaaacaaaatttgcaaaagttgattctagaagtttcatttgaatcaggaaagtaactggtgctgtggcaaaccatagtaccagcatttcctaattccaagtctagtacaaactgaaactaaatctaagaaaaaatataccaaaatcgccttaaaggagatcagcaacattggctgggagctcctcaattacgacgttgtaaaacttctgtatgtcaaaaagcatcctttcgtcatccttggtgacaaagttgatagcaacacccttccttccaaatcgtccactacgaccaatacgatgcaggtagttttctggttgagttggcaggtcatagttaataacaagagagacttgttggacatcaataccacgagcaaggagatcggttgtgataagcacacgagatgagccagatcggaactccctcataatgatatctcttgtgttctgatccatgtctccgtgagttgcagatactgtgtgatcacggccacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="14713" stop="15908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15013" g_stop="15608" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E562003" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15013" e_stop="15608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACA-CCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAA--AAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATGATGATATCTCTTGTGTTCTGATCCATGTCTCCATGAGTTGCAGATACTGTGTGGTCACGTCCACGCA</genome_strand>
        <mrna_strand>TAAAAGC-TTA-CTTCCATAGGGAAATAGATAAATTACACAATTCAAACAATACCCAAATCCAAAGTTATTTGGATGC-TTAAAGATATAAAATGACAAACCAAACAAAATTTGCAAAAGTTGATTCTAGAAGTTTCATTTGAATCAGGAAAGTAACTGGTGCTGTGGCAAACCATAG-TACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGAAACTAAATCTAAGAAAAAATATACC-AAAATCGCCTTAAAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCGTCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGAGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATAATGATATCTCTTGTGTTCTGATCCATGTCTCCGTGAGTTGCAGATACTGTGTGATCACGGCCACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578898" ref_strand="+" ref_description="SGN-E578898 [86020]">
      <seq>aaaaatccaagtgggtgtttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattcttgtgaagcgtgatgagctcactcttgaaggtattaagcaattttatgtcaatgtcgataaggaagagtggaagcttgaaacactttgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacacaagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctctcttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgacgaaaggatgctttttgacatacagaagttttacaacgtcgtagttgaggagctcccagccaatgttgctgatctcctctaaggtgattttggtatatttttcttaaatttagtttcagtttgtactagacttggaattaggaaatgctggtaccatggcttgccacagcaccagttactttcctgattcaaatgaaacttctagagtcaacttttgcaaatttggtttggtttgtcattttatatcttaaagcatccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16168" stop="14781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15868" g_stop="15081" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E578898" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15868" e_stop="15081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAAC--CTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAA</genome_strand>
        <mrna_strand>AAAAATCCAAGTGGGTG-TTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACAAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCTCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGACGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAGTTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGTGA-TTTTGGTATATTT-TTCTTAAATTTAGTTTCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTA-CCATGGCTTGCCACAGCACCAGTTACTTTCCTGATTCAAATGAAACTTCTAGAGTCAACTTTTGCAAATTTGGTTTGGTTTGTCATTTTATATC-TTAAAGCATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344362" ref_strand="+" ref_description="SGN-E344362 [cTOF-16-F22]">
      <seq>gctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgctatcaactttgtcaccaaggatgatgaaaggatgctttttgacatacagaagttttacaacgtcgtaattgaggagctcccagccaatgttgctgatctcctctaaggcgattnttggtatatttattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17377" stop="14937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17077" g_stop="17042" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15237" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="697" r_length="661" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E344362" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17077" e_stop="17042"/>
          <exon e_start="15897" e_stop="15237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTT</genome_strand>
        <mrna_strand>GCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTNTTGGTATATTTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601051" ref_strand="+" ref_description="SGN-E601051 [54077]">
      <seq>tcctggtcgtgtatttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttctggatgaagctgatgaaatgctctcaagaggtttcaaggatcagatttatgatattttccaattgctgccaccaaagattcaagttggtgttttctctgccacaatgccaccagaggcccttgaaattactaggaagttcatgaacaagcctgtgaggatccttgtgaagcgtgatgagctcactcttgaaggtatcaagcaattttatgtcaatgttgacaaggaagagtggaagcttgaaactctttgcgatctttacgagaccttagccatcacccagagtgtgatctttgtgaacaccaggcgtaaggttgattggctcactgataagatgcgcagccgtgatcacacagtatctgccactcatggagacatggaccagaacaccagagatatcattatgcgagagttccgatctgggtcatctcgtgtgcttatcactaccgatcttctggcacgtggtattgatgtgcagcaagtatcccttgtgattaactatgaccttcctactcagccagaaaactacttgcatcgtatctggtcgtagtggacgatttggaaggaagggtgtagctatcaattttgtcacaaaggatgatgaaaggatgctttttgacattcagaagttttacaatgttgtagtggaggagctaccagccaatgtgggcgatcttctttgacgtggtggtataggtagtctgagctgaaattcttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17453" stop="14945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17153" g_stop="17042" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.807" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15280" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="731" r_length="619" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E601051" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17153" e_stop="17042"/>
          <exon e_start="15897" e_stop="15280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTAT-TGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAAT</genome_strand>
        <mrna_strand>TCCTGGTCGTGTATTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTCTGGATGAAGCTGATGAAATGCTCTCAAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATTTTCCAATTGCTGCCACCAAAGATTCAAGTTGGTGTTTTCTCTGCCACAATGCCACCAGAGGCCCTTGAAATTACTAGGAAGTTCATGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTACGAGACCTTAGCCATCACCCAGAGTGTGATCTTTGTGAACACCAGGCGTAAGGTTGATTGGCTCACTGATAAGATGCGCAGCCGTGATCACACAGTATCTGCCACTCATGGAGACATGGACCAGAACACCAGAGATATCATTATGCGAGAGTTCCGATCTGGGTCATCTCGTGTGCTTATCACTACCGATCTTCTGGCACGTGGTATTGATGTGCAGCAAGTATCCCTTGTGATTAACTATGACCTTCCTACTCAGCCAGAAAACTACTTGCATCGTATCTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTAGCTATCAATTTTGTCACAAAGGATGATGAAAGGATGCTTTTTGACATTCAGAAGTTTTACAATGTTGTAGTGGAGGAGCTACCAGCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483759" ref_strand="+" ref_description="SGN-E483759 [cSTE-10-H2]">
      <seq>tttgccaccaaaaatccaagtgggtgttttctctgccactatgccaccagaagctcttgagattactagaaagttcatgaacaagcctgtgagaattcttgtgaagcgtgatgagctcactcttgaaggtattaagcaattctatgtcaacgtcgataaggaagaagtggaagctcgaaacactctgtgatctttacgagaccttggccatcacccagagtgtcatctttgttaacaccaggcgaaaggttgattggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacactagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctctcttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgtagtggacgatttggaaggaagggtgttgcaatcaactttgttaccaaggatgacgaaaggatgctttttgacatacagaagttttacaacgtcgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16177" stop="14999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15877" g_stop="15299" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E483759" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15877" e_stop="15299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAG-AGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAAT</genome_strand>
        <mrna_strand>TTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAAGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAAGTGGAAGCTCGAAACACTCTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTTAACACCAGGCGAAAGGTTGATTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCTCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCAATCAACTTTGTTACCAAGGATGACGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231723" ref_strand="+" ref_description="SGN-E231723 [cLED-4-N17]">
      <seq>tgaacaagcctgtgaggatccttgtgaagcgtgatgagctcactcttgaaggtatcaagcaattttatgtcaatgttgacaaggaagagtggaagcttgaaactctttgcgatctttacgagaccttagccatcacccagagtgtcatctttgtgaacaccaggcgcaaggttgattggctcactgataagatgcgcagccgtgatcacacagtatctgccactcatggagacatggaccagaacactagagatatcattatgcgagagttccgatctggatcatctcgtgtgctcatcactactgatcttctggcacgtggtattgatgtgcagcaagtatcccttgtgattaactatgacctgcctactcagccagaaaactacttgcatcgtattggtcgtagtggacgatttggaaggaagggtgtagctatcaattntgtcacaaaggatgatgaaaggatgctttttgacattcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16100" stop="15016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15800" g_stop="15316" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E231723" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15800" e_stop="15316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAG</genome_strand>
        <mrna_strand>TGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTACGAGACCTTAGCCATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTTGATTGGCTCACTGATAAGATGCGCAGCCGTGATCACACAGTATCTGCCACTCATGGAGACATGGACCAGAACACTAGAGATATCATTATGCGAGAGTTCCGATCTGGATCATCTCGTGTGCTCATCACTACTGATCTTCTGGCACGTGGTATTGATGTGCAGCAAGTATCCCTTGTGATTAACTATGACCTGCCTACTCAGCCAGAAAACTACTTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTAGCTATCAATTNTGTCACAAAGGATGATGAAAGGATGCTTTTTGACATTCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239509" ref_strand="+" ref_description="SGN-E239509 [cLED-23-J8]">
      <seq>tgaacaagcctgtgaggatccttgtgaagcgtgatgagctcactcttgaaggtatcaagcaattttatgtcaatgttgacaaggaagagtggaagcttgaaactctttgcgatctttacgagaccttagccatcacccagagtgtcatctttgtgaacaccaggcgcaaggttgattggctcactgataagatgcgcagccgtgatcacacagtatctgccactcatggagacatggaccagaacactagagatatcattatgcgagagttccgatctggatcatctcgtgtgctcatcactactgatcttctggcacgtggtattgatgtgcagcaagtatcccttgtgattaactatgacctgcctactcagccagaaaactacttgcatcgtattggtcgtagtggacgatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16100" stop="15082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15800" g_stop="15382" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E239509" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15800" e_stop="15382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGA</genome_strand>
        <mrna_strand>TGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTACGAGACCTTAGCCATCACCCAGAGTGTCATCTTTGTGAACACCAGGCGCAAGGTTGATTGGCTCACTGATAAGATGCGCAGCCGTGATCACACAGTATCTGCCACTCATGGAGACATGGACCAGAACACTAGAGATATCATTATGCGAGAGTTCCGATCTGGATCATCTCGTGTGCTCATCACTACTGATCTTCTGGCACGTGGTATTGATGTGCAGCAAGTATCCCTTGTGATTAACTATGACCTGCCTACTCAGCCAGAAAACTACTTGCATCGTATTGGTCGTAGTGGACGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272429" ref_strand="+" ref_description="SGN-E272429 [cLEM-19-D21]">
      <seq>acgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacctgccaactcaaccagaaaactacctgcatcgtattggtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17373" stop="15097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17073" g_stop="17042" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15397" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="533" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E272429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17073" e_stop="17042"/>
          <exon e_start="15897" e_stop="15397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGT</genome_strand>
        <mrna_strand>ACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709460" ref_strand="+" ref_description="SGN-E709460 [FA52AD12]">
      <seq>cgctcaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggacgtgaccacacagtatctgcaactcatggagacatggatcagaacacaagagatatcatcatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatctccttgctcgtggtattgatgtccaacaagtctcccttgttattaactatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17604" stop="15137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17306" g_stop="17042" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15437" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="725" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E709460" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17306" e_stop="17042"/>
          <exon e_start="15897" e_stop="15437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCT</genome_strand>
        <mrna_strand>CGC-TCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362679" ref_strand="+" ref_description="SGN-E362679 [cLPP-1-O11]">
      <seq>ttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcccgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattttatgtcaatgtcgataaggaagagtggaagctcgaaacactttgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactgataaaatgcgtggccgtgatcacacagtatctgcaactcacggagacatggatcagaacacaagagatatcattatgagggagttccgatctggctcatctcgtgtgcttatcacaaccgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16195" stop="15191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15895" g_stop="15491" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E362679" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15895" e_stop="15491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCT</genome_strand>
        <mrna_strand>TTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCCGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTCGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACAAGAGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591835" ref_strand="+" ref_description="SGN-E591835 [45556]">
      <seq>ctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaagcacaatctggtactggaaagaccgcaactttctgctctggaatcctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagaagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattcttgtgaagcgtgatgagctcactcttgaaggtattaagcaattttatgtcaatgtcgataaggaagagtggaagcttgaaacactttgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgacttggctcactgataaaatgcgtggcccgtgatcacacagtatctgcaactcacggagacatggatcagaacacaagagatatccttatgagggagttccgatctggctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17754" stop="15215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17454" g_stop="17042" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15515" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="799" r_length="385" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E591835" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17454" e_stop="17042"/>
          <exon e_start="15897" e_stop="15515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAG-AGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGAC-TGGCTCACTGATAAAATGCGTGG-ACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATC</genome_strand>
        <mrna_strand>CTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAAGCACAATCTGGTACTGGAAAGACCGCAACTTTCTGCTCTGGAATCCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTTGGCTCACTGATAAAATGCGTGGCCCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACAAGAGATATCCTTATGAGGGAGTTCCGATCTGGCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408622" ref_strand="+" ref_description="SGN-E408622 [PPI-11-N7]">
      <seq>ctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctcggtgtgaaggttcatgcttgtgttggcggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgccactatgccaccagaggctcttgagattactagaaagttcatgaacaagcccgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcaattttatgtcaatgtcgataaggaagagtggaagctcgaaacactttgtgatctttacgagaccttggccatcacccagagcgtcatctttgttaacactaggcgaaaggttgactggctcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17614" stop="15314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17314" g_stop="17042" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15614" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="557" r_length="284" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E408622" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17314" e_stop="17042"/>
          <exon e_start="15897" e_stop="15614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGA</genome_strand>
        <mrna_strand>CTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTCGGTGTGAAGGTTCATGCTTGTGTTGGCGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCCGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTCGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271901" ref_strand="+" ref_description="SGN-E271901 [cLEM-8-J22]">
      <seq>atgtgtaagtctctctttcttttataattttcaatttgcttgacaatatatgccagttattgatcagcttgttggcgagtcctccctccccccaaattgtagctttgatgtgctctaactaacctttgtcaacaattgctgccacatctttctggtttattcctcctttgttttgatgatttaacttttcccatgacacaaatattattttccagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaggaagagtggaagcttgaaacactatgtgatctttacgagaccttggccatcaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16412" stop="15363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16112" g_stop="15663" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E271901" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16112" e_stop="15663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCC</genome_strand>
        <mrna_strand>ATGTGTAAGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450149" ref_strand="+" ref_description="SGN-E450149 [cSTS-8-F3]">
      <seq>tttgcaagggtcttgatgtgatccaacaggcacaatctggtacaaggaaagactgcaactttctgctctgggattctccagcagcttgattacagcttagtcgaatgtcaggctctggttctggctccaacccgtgagcttgcccaacagattgagaaggttatgcgagcacttggtgactatcttggtgtgaaggttcatgcctgtgtaggaggtaccagtgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggttgttggtactcctggtcgtgtatttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttctggatgaagctgatgaaatgctctcaagaggtttcaaggatcagatttatgatattttccaattgctgccaccaaagattcaagttggtgttttctctgccacaatgccaccagaggcccttgaaattactaggaagttcatgaacaagcctgtgaggatccttgtgaagcgtgatgagctcactcttgaaggtatcaagcaattttatgtcaatgttgacaaggaagagtggaagcttgaaactctttgcgatcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17727" stop="15383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17427" g_stop="17042" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.807" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15683" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="602" r_length="215" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E450149" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17427" e_stop="17042"/>
          <exon e_start="15897" e_stop="15683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTAC-TGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTA</genome_strand>
        <mrna_strand>TTTGCAAGGGTCTTGATGTGATCCAACAGGCACAATCTGGTACAAGGAAAGACTGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCTTAGTCGAATGTCAGGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTTCATGCCTGTGTAGGAGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTTGTTGGTACTCCTGGTCGTGTATTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTCTGGATGAAGCTGATGAAATGCTCTCAAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATTTTCCAATTGCTGCCACCAAAGATTCAAGTTGGTGTTTTCTCTGCCACAATGCCACCAGAGGCCCTTGAAATTACTAGGAAGTTCATGAACAAGCCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACTCTTGAAGGTATCAAGCAATTTTATGTCAATGTTGACAAGGAAGAGTGGAAGCTTGAAACTCTTTGCGATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703897" ref_strand="+" ref_description="SGN-E703897 [FA22DB03]">
      <seq>ctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgtcaatgtcgataaagaagagtggaagcttgaaacactatgtgatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19674" stop="15384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19374" g_stop="19335" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="101" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="208" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="639" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15684" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="853" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E703897" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19374" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTT</genome_strand>
        <mrna_strand>CTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAAGAAGAGTGGAAGCTTGAAACACTATGTGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309977" ref_strand="+" ref_description="SGN-E309977 [cTOA-4-K9]">
      <seq>gagaactagtctctctttcttttataattttcaatttgcttgacaatatatgccagttattgatcagcttgttggcgagtcctccctccccccaaattgtagctttgatgtgctctaactaacctttgtcaacaattgctgccacatctttctggtttattcctcctttgttttgatgatttaacttttcccatgacacaaatattattttccagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagctttatgtcaatgtcgataaggaagagtggaagcttgaaacactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16407" stop="15393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16104" g_stop="15693" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="420" r_length="412" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E309977" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16104" e_stop="15693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTAT</genome_strand>
        <mrna_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGCTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309980" ref_strand="+" ref_description="SGN-E309980 [cTOA-4-M1]">
      <seq>gagaactagtctctctttcttttataattttcaatttgcttgacaatatatgccagttattgatcagcttgttggcgagtcctccctccccccaaattgtagctttgatgtgctctaactaacctttgtcaacaattgctgccacatctttctggtttattcctcctttgttttgatgattcaacttttcccatgacacaaatattattttccagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaagtattaagcagttttatgtcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="16407" stop="15427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16104" g_stop="15727" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="386" r_length="378" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E309980" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16104" e_stop="15727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAAT</genome_strand>
        <mrna_strand>GTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTCAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAAGTATTAAGCAGTTTTATGTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705533" ref_strand="+" ref_description="SGN-E705533 [FA27BF10]">
      <seq>cggtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttgaaggtattaagcagttttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19717" stop="15431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19419" g_stop="19335" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="146" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="253" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="684" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15731" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="851" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E705533" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19419" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGT</genome_strand>
        <mrna_strand>CGGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721884" ref_strand="+" ref_description="SGN-E721884 [FC15CD02]">
      <seq>gggcgattggcggccaatcggccgaattgctcaactccgcggcgccgatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaacaagcctgtgagaattctcgtgaagcgtgatgagctcactcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19747" stop="15452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19444" g_stop="19335" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="139" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="200" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="307" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="738" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15752" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="884" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E721884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19444" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGA</genome_strand>
        <mrna_strand>CTCAACTCCGCGGCGCCGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472339" ref_strand="+" ref_description="SGN-E472339 [cSTB-28-I24]">
      <seq>tgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtacgagtgtacgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgagatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgccactatgccaccagaggctcttgagattactagaaaattcatgaacaaacctgtgagaattctcgtgaagcgtgatgagctcactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17714" stop="15453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17414" g_stop="17042" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15897" g_stop="15753" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="518" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E472339" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17414" e_stop="17042"/>
          <exon e_start="15897" e_stop="15753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTG</genome_strand>
        <mrna_strand>TGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACGAGTGTACGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAGATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAACCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598904" ref_strand="+" ref_description="SGN-E598904 [51880]">
      <seq>gtagatccgaggagtttcagacagtctttacaaaccctaacccccaatcgcttttacccacttctcctcctactctttactctttattcctcagatctttaactcatctttatcagtcatggctggcttggcaccggaaggttctcaatttgatgctcgtcaatttgatgctaaaatgaccgagctgcttgggactgaacagcaggagttcttcacatcatatgatgaggttcatgacagttttgatgccatgggtttgcaagaaaaccttcttaggggaatctatgcctatggttttgagaagccatctgctatccagcaaaggggtattgttcctttttgcaagggtcttgatgtgatccaacaggcacaatctggtacaggaaagactgcaactttctgctctgggattctccagcagcttgattacagcttagtcgaatgtcaggctctggttctggctccaacccgtgagcttgcccaacagattgagaaggttatgcgagcacttggtgactatcttggtgtgaaggttcatgcctgtgtaggaggtaccagtgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggttgttggtactcctggtcgtgtatttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttctggatgaagctgatgaaatgctctcaagaggtttcaaggatcagatttatgatattttccaaattgctgccaccaaagattcaagttggtgttttctctgccacaatgccaccagaggcccttgaaattactaggaagttcatgaaccagcctgtgaggatcttgtgaagcgtgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19730" stop="9920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19367" g_stop="19335" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="113" r_length="34" r_score="0.576"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="18667" i_length="668">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18666" g_stop="18656" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="125" r_length="12" r_score="0.636"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18655" i_stop="17905" i_length="751">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.396" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="186" r_length="61" r_score="0.852"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="293" r_length="107" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.92"/>
            <acceptor a_prob="0.033" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="724" r_length="431" r_score="0.928"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.807" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15897" g_stop="15763" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="859" r_length="135" r_score="0.859"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E598904" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19367" e_stop="19335"/>
          <exon e_start="18666" e_stop="18656"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTTGACAAA-CTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCAT-GCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTT-TTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAG</genome_strand>
        <mrna_strand>CTCTTTATTCCTCAGATCTTTAACTCATCTTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCATGGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGCACCGGAAGGTTCTCAATTTGATGCTCGTCAATTTGATGCTAAAATGACCGAGCT................................................................................................................................................................................GCTTGGGACTGAACAGCAGGAGTTCTTCACATCATATGATGAGGTTCATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTTAGGGGAATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCTTTTTGCAAGGGTCTTGATGTGATCCAACAGGCACAATCTGGTACAGGAAAGACTGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCTTAGTCGAATGTCAGGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTTCATGCCTGTGTAGGAGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTTGTTGGTACTCCTGGTCGTGTATTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTCTGGATGAAGCTGATGAAATGCTCTCAAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATTTTCCAAATTGCTGCCACCAAAGATTCAAGTTGGTGTTTTCTCTGCCACAATGCCACCAGAGGCCCTTGAAATTACTAGGAAGTTCATGAACCAGCCTGTGAGGA-TCTTGTGAAGCGTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450621" ref_strand="+" ref_description="SGN-E450621 [cSTS-9-L22]">
      <seq>cgtagatccgaggagtttttttggaagaagaaaaaaagctgcagtctttgaaaaccctaattcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggaatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtacgagtgtacgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgagatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtggggtgttttctctgccactatgccaccagaggctcttgagattactagaaaattcatgaacaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19731" stop="15490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17624" g_stop="17561" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="123" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="554" r_length="431" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15897" g_stop="15790" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="663" r_length="109" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E450621" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17624" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGT-GGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCT</genome_strand>
        <mrna_strand>ATTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGAATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACGAGTGTACGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAGATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGGTGTTTTCTCTGCCACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721163" ref_strand="+" ref_description="SGN-E721163 [FC12DH06]">
      <seq>aatcggccgaattgaactccgcggcgtagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcaaatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcaaagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19743" stop="15496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19438" g_stop="19335" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="121" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="182" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="289" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="720" r_length="431" r_score="0.998"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="822" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E721163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19438" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAAC</genome_strand>
        <mrna_strand>TCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAAATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAAAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719473" ref_strand="+" ref_description="SGN-E719473 [FC07DH09]">
      <seq>gggcgattggcggccaaatcggccgaattaactccgcggcgtagctctaaggagtttttgtaaaactgcagtctttgaaaaccctacttctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttgagattactagaaagttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19743" stop="15500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19438" g_stop="19335" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="136" r_length="104" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="197" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="304" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="735" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15800" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="833" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E719473" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19438" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCAT</genome_strand>
        <mrna_strand>TCCGCGGCGTAGCTCTAAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTACTTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709531" ref_strand="+" ref_description="SGN-E709531 [FA52BC12]">
      <seq>cactcttaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgccaccagaggctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19725" stop="15519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19428" g_stop="19335" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="155" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="262" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="693" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15819" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="772" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E709531" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19428" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTG</genome_strand>
        <mrna_strand>CACTCTTAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320231" ref_strand="+" ref_description="SGN-E320231 [cTOB-21-I8]">
      <seq>cgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgacacatcaagatgtttgttttggatgaagctgacgaatgctctctagaggtttncaggatcagatttatgatatattccagcttttgccaccaaaaatccaagtgggtgttttctctgcgactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19723" stop="15534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19423" g_stop="19335" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="150" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="686" r_length="429" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15834" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="750" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E320231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19423" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGC</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGA-CACATCAAGATGTTTGTTTTGGATGAAGCTGACG-AATGCTCTCTAGAGGTTTNCAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447830" ref_strand="+" ref_description="SGN-E447830 [cSTS-3-G17]">
      <seq>agtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattccaaatctttcagacctttctttacaaacttcaaatcgttactcaatcctggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggaatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattaccagtttagttgagtgtcaggcttctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtacgagtgtaccgtgaggatcagcgcatccttcagnagcggtgttcatgtttgtgggttggtactccagggccgtgtctttgacatgttgcgccaggcagtctcttcgccccgacccatcaagaatgtttgttttggatgaagctgacgagatgctctctagaggtttcaaggatcagatttatgatatattccagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="15574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="96" r_length="69" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.84"/>
            <acceptor a_prob="0.396" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="264" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="703" r_length="439" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15874" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="727" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E447830" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCA-TCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTA-CAGTTTAGTTGAGTGTCAGGC-TCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGT-CCGTGAGGATCAGCGCATCCTTCAG-AGCGGTGTTCATG-TTGT-GGTTGGTACTCCA-GGCCGTGTCTTTGACATGTTGCG-CAGGCAGTCTCTTCGCCCCGACCACATCAAG-ATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTG</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTC-CAAATCTTTCAGACCTTTCTTT-ACAAACTTCAAATCGTTACTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGAATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACCAGTTTAGTTGAGTGTCAGGCTTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACGAGTGTACCGTGAGGATCAGCGCATCCTTCAGNAGCGGTGTTCATGTTTGTGGGTTGGTACTCCAGGGCCGTGTCTTTGACATGTTGCGCCAGGCAGTCTCTTCGCCCCGACC-CATCAAGAATGTTTGTTTTGGATGAAGCTGACGAGATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCCAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455793" ref_strand="+" ref_description="SGN-E455793 [cSTS-27-I6]">
      <seq>ggagtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattctcaaatctttcagactctttctttaacaaaacttcaaatcgctatcagtcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggagttctccagcagcttgattacagtttagttgagtgtcaagctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctcggtgtgaaggttcatgcttgtgttggcggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcangcagtctcttcgccctgacccatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatcagatttatgatatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="10038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="101" r_length="72" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.83"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="162" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="269" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17042" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="699" r_length="430" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15897" g_stop="15882" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="715" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E455793" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17042"/>
          <exon e_start="15897" e_stop="15882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGA-TCTTTCTTTGAC-AAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAGGTTGCCCTTTTACTTGAATTTTTGCTGTATTTTTTCTTAGTTCAGAGCAGGATTTGCCCTTATTTTCTGTCACTAAATGATGTTTCTGTGTTTGAAGGTTAACTAACATTTAACAATCTAGAAGTGGAGATTGTTATATCATTTTATCAACAACATATAAGAATTCACCCTTTCTAATTCTGATCAAGTGAAACAGAATTCGATTTTATGTGTGTTTATGTAGTTGATAGTGAACTAATAAAGCTAGGGCTAATTTGTTAGTAATATATTTCTCCCTCAAATTATAAATCAACAATTCCTCAGTCCTAAACTAGAGTTCAGTTCTATGGATTTTCTTTATCTAGCTTGAAATGCAATCCTTTTCAGGCCTAAGCTAAATAATCTGAAATCTAAAACAAGTTAAGAGGTTCTCTAAACTTCAAAGTTCCTTGAGTCTCACAGCTTAGCTCTATCTAGTACAAAGATCTCCTGCACTACTAGATCAAATGCAAGGGCGACAACAATTAAGTGTTGACTCTCAACTAGTTGGTATTGTTATATGGATCAATTACTAAGTACTCTGTGAAATACAAATGTTGCAGTTTCAAAAAAAAAAAGAAGAAACAAAAGAAAAAAAGTTTGCATTTGTTTCTAGAGATCGCAAGTCTTCTCCGATAATTAATCTTCCATGATATTTGAGGTTTACCTTTTTCGTTGATACTATGTTCAATCATCATAGTCCTGTGCCTACGGATCAAGATCATTTGAAAGTCAGATAGGCCCTTTTTTGATGTTATCTTATATGTGTAATATTTATATACTCTCTCGAATGTTATCATGTCGAATCTTGTCAAATCACATATGAGTGCACATCTGTAATCCTTTGCATATACATGACACTTATTTTGTGGACGTTTCACCCTCATGGTCAAGTCCGCATAGATTTCAAGATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCC</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGACTCTTTCTTTAACAAAACTTCAAATCGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAAGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTCGGTGTGAAGGTTCATGCTTGTGTTGGCGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCANGCAGTCTCTTCGCCCTGACC-CATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATGATATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728189" ref_strand="+" ref_description="SGN-E728189 [LA17AA03]">
      <seq>agatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctctctagaggtttcaaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19728" stop="16744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19428" g_stop="19335" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="155" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="262" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17044" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="691" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E728189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19428" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATC</genome_strand>
        <mrna_strand>AGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561778" ref_strand="+" ref_description="SGN-E561778 [19105]">
      <seq>aagaaagaaaaaaaagctgcagtctttgaaaaccctaattcacaaatctttcagatctttctttaacaaacttcaaatcgttatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggtccatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttggttggatgaagctgacgaaatgctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="87" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="148" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="255" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17060" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="667" r_length="412" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E561778" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCT</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCACAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTCCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTG-GTTGGATGAAGCTGACGAAATGCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450491" ref_strand="+" ref_description="SGN-E450491 [cSTS-9-D1]">
      <seq>tagatccgaggagtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattctcaaatctttcagatctttcattaacaaacttcaaatcgttatcaattatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgactgagctgcttggtactgaacagcaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaagcacaatctggtactggaaagaccgcaactttctgctctggaatcctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19729" stop="16763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="108" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="169" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="276" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.98"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17063" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="686" r_length="410" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E450491" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTC</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCATTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACTGAGCT................................................................................................................................................................................GCTTGGTACTGAACAGCAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAAGCACAATCTGGTACTGGAAAGACCGCAACTTTCTGCTCTGGAATCCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483731" ref_strand="+" ref_description="SGN-E483731 [cSTE-10-P3]">
      <seq>ccgaggagtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattcacaaatctttcagatctttctttaacaaacttcaaatcgttatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgngtgtgaaggtccatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccangccgtgtctttgacatgttgcgcaggcagtctcttcgccccgaccacatcaagatgtttgttttggatgaagctgacgaaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="103" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="164" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="271" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17063" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="681" r_length="410" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E483731" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTC</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCACAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGNGTGTGAAGGTCCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCANGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558373" ref_strand="+" ref_description="SGN-E558373 [17703]">
      <seq>aaaaactgcagtctttgaaaaccctaattcacaaatctttcagatctttctttaacaaacttcaaatcgttatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacatagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagtttagatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggtccatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccagggcgtgtctttgacatgttgcgcaggcagtctcttcgacccgaccacatcaagatgtttgtctgggatgaagctgacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19410" g_stop="19335" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="137" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="244" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.94"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17069" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="648" r_length="404" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E558373" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19410" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAA</genome_strand>
        <mrna_strand>AAAAACTGCAGTCTTTGAAAACCCTAATTCACAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACATAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTAGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTCCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGGCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGACCCGACCACATCAAGATGTTTGTCTGGGATGAAGCTGACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257526" ref_strand="+" ref_description="SGN-E257526 [cLEG-45-K7]">
      <seq>gcttctctttccctcagatcttttactcttctttatcagtcatggctggcttggcaccggaaggttctcaatttgatgctcgtcaatttgatgctaaaatgacagagctgcttgggactgaacagcaggagttctttacatcatatgatgaagttcatgacagtttcgatgccatgggtttgcaagaaaatcttcttaggggcatctatgcctatggttttgagaagccatctgctatccagcaaaggggtattgttcctttttgcaagggtcttgatgtgattcaacaggcacaatctggtacaggaaagacagcaactttctgctctgggattctccagcagcttgattacagcttagtcgaatgtcaggctctggttctggctccaacccgtgagcttgcccaacagattgagaaggttatgcgagcacttggtgactatcttggtgtgaaggttcatgcctgtgtangaggtaccantgtccgtgaggatcagcgtatccttcaaagtggtgttcatgtggttgttggtactcctggtcgtgtatttgatatgttgcgtaagcagtctcttcgccctgaccacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18238" stop="16798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="109" r_length="61" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="216" r_length="107" r_score="0.916"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.94"/>
            <acceptor a_prob="0.033" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17472" g_stop="17098" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="591" r_length="375" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E257526" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCA</genome_strand>
        <mrna_strand>GCTTGGCACCGGAAGGTTCTCAATTTGATGCTCGTCAATTTGATGCTAAAATGACAGAGCT................................................................................................................................................................................GCTTGGGACTGAACAGCAGGAGTTCTTTACATCATATGATGAAGTTCATGACAGTTTCGATGCCATGGGTTTGCAAGAAAATCTTCTTAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCTTTTTGCAAGGGTCTTGATGTGATTCAACAGGCACAATCTGGTACAGGAAAGACAGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCTTAGTCGAATGTCAGGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTTCATGCCTGTGTANGAGGTACCANTGTCCGTGAGGATCAGCGTATCCTTCAAAGTGGTGTTCATGTGGTTGTTGGTACTCCTGGTCGTGTATTTGATATGTTGCGTAAGCAGTCTCTTCGCCCTGACCACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481843" ref_strand="+" ref_description="SGN-E481843 [cSTD-19-F2]">
      <seq>ctcaactccgcggcgtagatccgaggagtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattcacaaatctttcagatctttctttaacaaacttcaaatcgttatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggaatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtacgagtgtacgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtctccaggccgtgtctttgacatgttgcgcaggcagtctcttcgccccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19744" stop="16807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="123" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="184" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="291" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17107" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="656" r_length="365" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E481843" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCG</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCACAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGAATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACGAGTGTACGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGT-CTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249752" ref_strand="+" ref_description="SGN-E249752 [cLEF-57-I22]">
      <seq>aaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaagctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaagccgtgtctttgacatgttgcgcaggcagtctcttcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19409" g_stop="19335" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="136" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="243" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17109" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="607" r_length="364" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E249752" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19409" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCC</genome_strand>
        <mrna_strand>AAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAAGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAAGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329365" ref_strand="+" ref_description="SGN-E329365 [cTOD-2-M7]">
      <seq>cgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttcagagcggtgttcatgttgtggttggtactccaggccgtgtctttgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19723" stop="16832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19423" g_stop="19335" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="150" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17132" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="598" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E329365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19423" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATG</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404472" ref_strand="+" ref_description="SGN-E404472 [PPC-14-K3]">
      <seq>aaaaagctgcagtctttgaaaaccctaattctcaaatctttcagatctttctttaacaaacttcaaatcgctatcagtcatggcagcagaaagttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggagttctccagcagcttgattacagtttagttgagtgtcaagctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctcggtgtgaaggttcatgcttgtgttggcggtaccagtgtccgtgaagatcagcgcatccttcagagcggtgttcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19411" g_stop="19335" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.396" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="138" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="245" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17165" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="553" r_length="308" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E404472" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19411" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTT</genome_strand>
        <mrna_strand>AAAAAGCTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAAGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAAGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTCGGTGTGAAGGTTCATGCTTGTGTTGGCGGTACCAGTGTCCGTGAAGATCAGCGCATCCTTCAGAGCGGTGTTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317832" ref_strand="+" ref_description="SGN-E317832 [cTOA-30-H9]">
      <seq>atccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgngtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19726" stop="16882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19426" g_stop="19335" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="153" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="260" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17182" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="551" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E317832" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19426" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGNGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572581" ref_strand="+" ref_description="SGN-E572581 [31758]">
      <seq>gtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattctcaaatctttcagatctttcattaacaaacttcaaatcgttatcaattatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgactgagctgcttggtactgaacagcaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaagcacaatctggtactggaaagaccgcaactttctgctctggaatcctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcgcatccttccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="96" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="264" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.98"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17182" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="555" r_length="291" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E572581" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCATTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACTGAGCT................................................................................................................................................................................GCTTGGTACTGAACAGCAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAAGCACAATCTGGTACTGGAAAGACCGCAACTTTCTGCTCTGGAATCCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439539" ref_strand="+" ref_description="SGN-E439539 [cSTA-12-F13]">
      <seq>gaggatccgaggagtttttttggattaagaaaaaaaagctgcagtctttgaaaaccctaattctcaaatctttcagatctttctttaacaaacttcaaatcgctatcagtcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggagttctccagcagcttgattacagtttagttgagtgtcaagctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctcggtgtgaaggttcatgcttgtgttggcggtaccagtgtccgtgaggatcagcgcatccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="170" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="277" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17182" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="568" r_length="291" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E439539" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAAGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTCGGTGTGAAGGTTCATGCTTGTGTTGGCGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333404" ref_strand="+" ref_description="SGN-E333404 [cTOD-20-J3]">
      <seq>tccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaagttcatgcttgtgttgggggtaccagtgtccgtgaagatcagcgcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19725" stop="16884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19425" g_stop="19335" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="152" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="259" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17184" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="547" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E333404" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19425" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCT</genome_strand>
        <mrna_strand>TCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAA-GTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAAGATCAGCGCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237690" ref_strand="+" ref_description="SGN-E237690 [cLED-19-D13]">
      <seq>caaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgtttggggtaccagtgtccgtgaggatcagcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19679" stop="16888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19379" g_stop="19335" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="106" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="213" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17188" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="498" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E237690" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19379" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCA</genome_strand>
        <mrna_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTTGGGGTACCAGTGTCCGTGAGGATCAGCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233208" ref_strand="+" ref_description="SGN-E233208 [cLED-6-L12]">
      <seq>caaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgtccgtgaggatcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19679" stop="16890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19379" g_stop="19335" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="106" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="213" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17190" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="496" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E233208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19379" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCG</genome_strand>
        <mrna_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310454" ref_strand="+" ref_description="SGN-E310454 [cTOA-9-G13]">
      <seq>atccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggggtaccagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19726" stop="16905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19426" g_stop="19335" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="153" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="260" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17205" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="528" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E310454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19426" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGT</genome_strand>
        <mrna_strand>ATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484326" ref_strand="+" ref_description="SGN-E484326 [cSTE-12-N24]">
      <seq>tggcagcagaaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgaacagagctgcttggtacctgaacaacaggaaattcttcacatcatatgatgaggttcacgaacagttttgatgccatgggtttgcaagaaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggtccatgcttgtgttgggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18201" stop="16912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17901" g_stop="17844" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="171" r_length="111" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.92"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17472" g_stop="17212" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="432" r_length="261" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E484326" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17901" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCAG-AAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATG-ACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTA-CTGAACAACAGG-AATTCTTCACATCATATGATGAGGTTCACG-ACAGTTTTGATGCCATGGGTTTGCAAG-AAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTA</genome_strand>
        <mrna_strand>TGGCAGCAGAAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGAACAGAGCT................................................................................................................................................................................GCTTGGTACCTGAACAACAGGAAATTCTTCACATCATATGATGAGGTTCACGAACAGTTTTGATGCCATGGGTTTGCAAGAAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTCCATGCTTGTGTTGGGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313131" ref_strand="+" ref_description="SGN-E313131 [cTOA-18-K17]">
      <seq>tagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtgaaggttcatgcttgtgttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19729" stop="16915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19429" g_stop="19335" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="156" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="263" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17215" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="521" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E313131" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19429" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGG</genome_strand>
        <mrna_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274069" ref_strand="+" ref_description="SGN-E274069 [cLEN-8-D18]">
      <seq>ttgggactgaacagcaggagttctttacatcatatgatgaagttcatgacagtttccatgccatgggtttgcacgaaaatcttcttaggggcatctatgcctatggttttgagaagccatctgctatccagcaaaggggtattgttcctttttgcaagggtcttgatgtgattcaacaggcacaatctggtacaggaaagacagcaactttctgctctgggattctccagcagcttgattacagcttagtctaatgtcaagctctggttctggctccaacccgtgagcttgcccaacagattgagaaggttatgcgagcacttggtgactatcttggtgtgaaggttcatgcctgtgtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="17965" stop="16917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17665" g_stop="17561" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.90"/>
            <acceptor a_prob="0.033" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17472" g_stop="17216" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="362" r_length="257" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E274069" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17665" e_stop="17561"/>
          <exon e_start="17472" e_stop="17216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGG</genome_strand>
        <mrna_strand>TTGGGACTGAACAGCAGGAGTTCTTTACATCATATGATGAAGTTCATGACAGTTTCCATGCCATGGGTTTGCACGAAAATCTTCTTAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCTTTTTGCAAGGGTCTTGATGTGATTCAACAGGCACAATCTGGTACAGGAAAGACAGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCTTAGTCTAATGTCAAGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTTCATGCCTGTGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484331" ref_strand="+" ref_description="SGN-E484331 [cSTE-12-P10]">
      <seq>ctttaacctcatctttatcagtcatggctggcttggcacccggaaggttctcaatttgatgctcgtcaatttgatgctaaaatgaccgagctgcttgggactgaacagcaggagttcttcacatcatatgatgaggttcatgacagttttgatgccatgggtttgcaagaaaaccttcttaggggaatctatgcctatggttttgagaagccatctgctatccagcaaaggggtattgttcctttttgcaagggtcttgatgtgatccaacaggcacaatctggtacaggaaagactgcaactttctgctctgggattctccagcagcttgattacagcttagtcgaatgtcaggctctggttctggctccaacccgtgagcttgcccaacagattgagaaggttatgcgagcacttggtgactatcttggtgtgaaggttcatgcctgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="18195" stop="16920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="92" r_length="62" r_score="0.820"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="199" r_length="107" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.92"/>
            <acceptor a_prob="0.033" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17472" g_stop="17220" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="452" r_length="253" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E484331" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCA-GCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGT</genome_strand>
        <mrna_strand>GCTTGGCACCCGGAAGGTTCTCAATTTGATGCTCGTCAATTTGATGCTAAAATGACCGAGCT................................................................................................................................................................................GCTTGGGACTGAACAGCAGGAGTTCTTCACATCATATGATGAGGTTCATGACAGTTTTGATGCCATGGGTTTGCAAGAAAACCTTCTTAGGGGAATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATCCAGCAAAGGGGTATTGTTCCTTTTTGCAAGGGTCTTGATGTGATCCAACAGGCACAATCTGGTACAGGAAAGACTGCAACTTTCTGCTCTGGGATTCTCCAGCAGCTTGATTACAGCTTAGTCGAATGTCAGGCTCTGGTTCTGGCTCCAACCCGTGAGCTTGCCCAACAGATTGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGTGTGAAGGTTCATGCCTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268134" ref_strand="+" ref_description="SGN-E268134 [cLEI-15-E22]">
      <seq>cgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcatgcacaatctggtactggaaagacagcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcacgctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgactacctgggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19723" stop="16937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19423" g_stop="19335" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="150" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="257" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17237" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="493" r_length="236" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E268134" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19423" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTG</genome_strand>
        <mrna_strand>CGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCATGCACAATCTGGTACTGGAAAGACAGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCACGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246419" ref_strand="+" ref_description="SGN-E246419 [cLEF-52-E24]">
      <seq>ggagtttttgtacaactgcagtctttgcaaacccgaattgtcaaatctttcagatcgttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcatgcacaatctggtactggaaagactgcaactctctgctctggaattctccatcagcttgattacagtttagttgagtgtcacgctctggttcttgcaccaacccgtgagcttgcacaacagattgagaatgttatgagagcacttggtgactacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19720" stop="16942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19420" g_stop="19335" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="147" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="254" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17242" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="485" r_length="231" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E246419" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19420" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGG</genome_strand>
        <mrna_strand>GGAGTTTTTGTACAACTGCAGTCTTTGCAAACCCGAATTGTCAAATCTTTCAGATCGTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCATGCACAATCTGGTACTGGAAAGACTGCAACTCTCTGCTCTGGAATTCTCCATCAGCTTGATTACAGTTTAGTTGAGTGTCACGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAATGTTATGAGAGCACTTGGTGACTACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467911" ref_strand="+" ref_description="SGN-E467911 [cSTB-2-G21]">
      <seq>gtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattctcaaatctttcagatctttctttaacaaacttcaaatcgctatcagtcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggagttctccagcagcttgattacagtttagttgagtgtcaagctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="96" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="264" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17244" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="493" r_length="229" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E467911" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCT</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAAGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438464" ref_strand="+" ref_description="SGN-E438464 [cSTA-8-I5]">
      <seq>atccgaggagtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattctcaaatctttcagatctttctttaacaaacttcaaatcgctatcagtcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggagttctccagcagcttgattacagtttagttgagtgtcaagctctggttcttgcaccaacccgcgagcttgcacaacagattgagaaggttatgagagcacttggtgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="105" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="166" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="273" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17247" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="499" r_length="226" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E438464" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTA</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGCTATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAAGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200207" ref_strand="+" ref_description="SGN-E200207 [cLEC-12-C15]">
      <seq>ttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacacacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaatgcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgtgagcttgcacaacagattgagaaggttatgagagcacttggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19715" stop="16949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19415" g_stop="19335" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="142" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="249" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17249" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="473" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E200207" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19415" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGAC</genome_strand>
        <mrna_strand>TTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACACACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATGCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473476" ref_strand="+" ref_description="SGN-E473476 [cSTB-32-D15]">
      <seq>gtttttttggaagaagaaaaaaaaagctgcagtctttgaaaaccctaattctcaaatctttcagatctttcttcaacaaacttcaaatcgttatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagaccgcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgcaccaacccgcgagcttgcacaacagattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="16974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="97" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="158" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="265" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17274" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="464" r_length="199" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E473476" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGA</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTCAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACCGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGCGAGCTTGCACAACAGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725908" ref_strand="+" ref_description="SGN-E725908 [LA08CH01]">
      <seq>tagatccgaggagtttttgtaaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttatgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgagtacagtttagttgactgtcaagctctggttcttgcaccaacccgtgagcttgctcaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19729" stop="16978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19429" g_stop="19335" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="156" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="263" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17278" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="458" r_length="195" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E725908" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19429" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGA</genome_strand>
        <mrna_strand>TAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTATGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGAGTACAGTTTAGTTGACTGTCAAGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCTCAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227005" ref_strand="+" ref_description="SGN-E227005 [cLED-1-D24]">
      <seq>caaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttaattgagtgtcaggctctggttcttgcaccaacccgtgagcttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19679" stop="16984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19379" g_stop="19335" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="106" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="213" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17284" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="402" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E227005" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19379" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCAC</genome_strand>
        <mrna_strand>CAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAATTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310574" ref_strand="+" ref_description="SGN-E310574 [cLEZ-19-D10]">
      <seq>tttttgttaaactgcagtctttgaaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgtcatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtgtcaggctctggttcttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19716" stop="17003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19416" g_stop="19335" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="143" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="250" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17303" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="420" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E310574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19416" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCA</genome_strand>
        <mrna_strand>TTTTTGTTAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440446" ref_strand="+" ref_description="SGN-E440446 [cSTA-16-H10]">
      <seq>gtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattcacaaatctttcagatctttctttaacaaacttcaaatcgttatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcaaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctgctgaggggcatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattctccagcagcttgattacagtttagttgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19709" stop="17022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="96" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="264" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17322" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="415" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E440446" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTG</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCACAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTGCTGAGGGGCATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473579" ref_strand="+" ref_description="SGN-E473579 [cSTB-33-I19]">
      <seq>gtagatccgaggagtttttttggaagaagaaaaaaaagctgcagtctttgaaaaccctaattcacaaatctttcagatctttctttaacaaacttcaaatcgttatcaatcatggcagcagaaggttctcagtttgatgctcgtcaattcgatgcgaaaatgacagagctgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggaatctatgcgtatggttttgagaagccatctgctattcagcaaaggggcattgttcctttttgcaagggccttgatgttatccagcaggcacaatctggtactggaaagacggcaactttctgctctggaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19730" stop="17052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19404" g_stop="19335" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="109" r_length="70" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="170" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="277" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="0.96"/>
            <acceptor a_prob="0.033" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17352" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="398" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E473579" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19404" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCT</genome_strand>
        <mrna_strand>TGCAGTCTTTGAAAACCCTAATTCACAAATCTTTCAGATCTTTCTTTAACAAACTTCAAATCGTTATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACAGAGCT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGAATCTATGCGTATG........................................................................................GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313244" ref_strand="+" ref_description="SGN-E313244 [cTOA-18-C16]">
      <seq>gtagatccgaggagtttttgtaaaactgcagtctttggaaaccctaattctcaaatctttcagatctttctttgacaaacttcaaatcaccatcaatcatggcagcagaagggtctcagtttgatgctcgtcaattcgatgcaaaaatgacagaactgcttggtactgaacaacaggaattcttcacatcatatgatgaggttcacgacagttttgatgccatgggtttgcaagaaaatctcctgaggggcatctatgcctatggttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="19730" stop="17259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19430" g_stop="19335" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.396" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17904" g_stop="17844" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="157" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17667" g_stop="17561" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="264" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88">
            <donor d_prob="0.719" d_score="1.00"/>
            <acceptor a_prob="0.033" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17472" g_stop="17465" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="272" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E313244" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19430" e_stop="19335"/>
          <exon e_start="17904" e_stop="17844"/>
          <exon e_start="17667" e_stop="17561"/>
          <exon e_start="17472" e_stop="17465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAAGTAGGTTACTCTTCTTATGCTTGTTTTCTTGTATTTTTTAGATTTTTTTATGTTAAAGTTTTTGTTTGATTGAAAGTTTGTGTTTTTATGATATATTTGTGTTTGAGTAGTGGTTTTGGTGAGTTGGGTGTTGATGGTTTTGCTGTTTTGTAGTGTGGGTTGGTTTTGGTTTTTGTTTTAAATGATTGGGAAAACGAGCGATCTAGTGATTCTTGTTTTATCTTTGTGTATCTAGGATTCATATAGCACCCCTTCCAAGCTGTTGTAGTTGTAGATGAGTGGTGTGTTAAAAGGGGTTAGCTTTGTAAAGATTAGAGGGGGTGGTAAGTTGGGATGCAGAAGAGGAGACTATGATTCCTAGATGTGCTTTGTTTAACTGTGTTGTTGACGTTCTTCTCGTTGTTTTGATGTATATTTGGAGCTCTCTTAGCTCCATGAGTTATGTGTGTCTTAGTGGTGTGCTAAAGGAGTTAGCTTTTTGCAAGGATTGGATGGGGTGGTGAGTTGGGAGGTAGGTAAGATAGGAGACTATAATATCTTGATGTGCCTGTGTTGTTGACATTCTTTTTGTTGTTTGGATGTTTATTTTCAACTCGCTCAGCTCCATGAGTGATGTGTGTCTTAATGGAGAGTTAGCTTTGCAAAGATTAGAGGGGGTGGTGACTTGGGAGTCATGCAGGCACGGAGACTATAATTCCTCGATGTGCCCTGTGTTGTTGACACTCCTCCTGATATTTTTTGACGTATATTTTCCACTATCTCAGCTCCATTAATAATGTGTGTCTAAGTGGTGTGCTAAAGGAGTTAGCTTTGCAAAGATTAGAGGGGGCGATAAGTTGGGAGGCAGGCAAGGAGACTATAATTCCTTGATGTGCCCTGTGTTATTGACATTCTTCCCGTTGTTTTGATTTATATTTTTCACTATCTCAGCTCTACTAGTAATTTGTGTCTGAGTGGCGTGCCAAAGGGGTTAGCTTTCCCAAAGATAATTGGAGTGGGGGGAGGGTGATAGGTTGGGAGGCAGGCGAGGAGATTATAATTACTCAATGTGCCGTGTGCTGTTGACATTCTTACTGTTGTTTTGGGAGAGAGGATGCATCTTGATTCTTGTGTATGACCTCTATAATAATTTGAAGAAAGAATAGATAATTTTTTTTGTACTTAATGAAAAAAAAATTTATATGTGACTTTGTTGAAGTGTTTTGGGTCTTTAACTGACTTACCTATTATTTTTTATGTCATGGAGTTGAGCTTTGACCTTCACTTTTTTATCATCTACAAAATGTTCAATGAATTGCCATATGACTTATAAGATTTATTATTTGTTAATAGAAAATATTAATCCCGAATAAATTAAATTTTTGCTTAGACTAGTATCCCAAAACTATTTTGAGATTGAGGTGCAGTTAATTAATTAAAAATTCCTGCAGTCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACTGTAAGTTATCTCTTTCCATCATACACGATGTCATGTTAATCTGGCTGGAAAGCATCCTTGATCCCCCCCCCCCCCCTCTTTCCAATTTATTGATTATCACTTTCTGCTGATATTTGGCGTCTGGTTTAGCCATTGATTTGATTGACTTTTGTTGTTATTTGATATGCCAAAAACAGGCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATGGTAAATTGATATCTCCTCCTAAGTCGGCTTCTTTTCCTCCATTCCCAGATTTTACAGGGCCCTGAACAGTCTTTTGAATTTCTTTAAGGTTTTGAG</genome_strand>
        <mrna_strand>GTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGGAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGCAGCAGAAGGGTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT................................................................................................................................................................................GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG........................................................................................GTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330684" ref_strand="+" ref_description="SGN-E330684 [cTOD-8-M1]">
      <seq>ttgcaaagaagcggtcgtggccaaccaagcggctgatgagcttaataaatggaaaattgaagaagctcgcaagttcgaacaagcgcgttttgctgaagaggcggctcttgcaattgctgagaccgaaaaggcgaaatgcagagctgctatcgaagctgctaagaaagcacaaaagatggctgaaatagaagcgcaaagaaggaagtatgcagagttgaaagctaagcgagaggcagaaaaaaagaaacaagcaattaatgttcgatctcagaatgatatacgttataggaagtatacaatagaagagattgaggcagccaccaaaaagttctcaaatgcacaaaaaattggagaaggtggatatggacctgtttttaagggtaaactagatcacacacctgttgccattaaagttctgagtcctgatgctgcacaagggaagaaacagttccaacaagaggttgaggtcctcagtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="24776" stop="22819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24476" g_stop="24446" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24445" i_stop="23974" i_length="472">
            <donor d_prob="0.229" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23973" g_stop="23545" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="460" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23544" i_stop="23139" i_length="406">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23138" g_stop="23119" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="480" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E330684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24476" e_stop="24446"/>
          <exon e_start="23973" e_stop="23545"/>
          <exon e_start="23138" e_stop="23119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCGGTAATAGCCCATTTTCTAACTGCCTAGAACCATAAAGATGAACACCATCTAAAACAGCAAAAAAGAGAGAAATTTATGGGCCCAACTATCTGAAATGTATTAAGCAAATCATAATTTCAAGAAACCTTGTTTTATAGTTCAATGATTTAAAAGATATTATAAGGGAACTCATGTGTCTACAAATTTTATCCATGCGTAGAACGAAGCGGCTCCCAACTCCCAAAACTACATGAATGCATTCTGCATTTTTATGGGAAGTTATTCCTCCAAGGAATATATAAGGTCTGAAATAATTGTTATTAGTTAGTACAATTCTCATCTATATGTGAGTAAGAAATAGCATTGCATCAGTTGTTTACGTTTCTGAAAAACAAGTTACAAATTTATGACATCAAGCTTAAGGACCAAGGCTTTCTCCCTCTTCTTATCCAGGAGTAAGTTTTTCATGTGTCATATTTCTACTGAGTTTCAGGCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAGGTAACCGTTTTTATTACTAATTCAATGATAGCCTCTCTTTTACAATATGTATTTAAGATATGAAACATTCTGCATTATGAGGGCTGAACAACTTCATTTTCCGTAGAATTTGTGCATTCATTGAGTCACTTCTGGAGTTAATTACACGCTATGCAATTGAGGGAATTTATGATAAATTGTAGAAAGTGGAAAATGCATTTATACTGATGATTTATTAATGTAAATGGGACATATTTTAACTTGCTATAACTAGAATGTCTAAAAGATGTTGTAGCTTGTACTCTCTCATCTATGCTACACTATTATTAGAATCCCTCTCTCTTAGTTAAATTGTTGATTGGTGTTAGTATGAGTATTTGACAAGCCGCTTACTGATGCACATGAAAAATGTTTTTTTCATTTACAGGTTGAGGTCCTCAGTCTCAT</genome_strand>
        <mrna_strand>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGTCCTCAGTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334361" ref_strand="+" ref_description="SGN-E334361 [cTOD-21-L5]">
      <seq>tgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggtttaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctangtcaagtaactctggatcagaagattcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28307" stop="25324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28007" g_stop="27737" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26475" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="357" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26474" i_stop="26025" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26024" g_stop="25903" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="479" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25902" i_stop="25825" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25824" g_stop="25624" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="680" r_length="201" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E334361" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28007" e_stop="27737"/>
          <exon e_start="26560" e_stop="26475"/>
          <exon e_start="26024" e_stop="25903"/>
          <exon e_start="25824" e_stop="25624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATCAGAAGATTCAAT</genome_strand>
        <mrna_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTANGTCAAGTAACTCTGGATCAGAAGATTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330344" ref_strand="+" ref_description="SGN-E330344 [cTOD-4-P10]">
      <seq>aaacgtgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggtttaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctaggtcaagtaactctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28312" stop="25336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28012" g_stop="27737" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26475" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="362" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26474" i_stop="26025" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26024" g_stop="25903" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="484" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25902" i_stop="25825" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25824" g_stop="25636" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="673" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E330344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28012" e_stop="27737"/>
          <exon e_start="26560" e_stop="26475"/>
          <exon e_start="26024" e_stop="25903"/>
          <exon e_start="25824" e_stop="25636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</genome_strand>
        <mrna_strand>AAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334235" ref_strand="+" ref_description="SGN-E334235 [cTOD-21-L4]">
      <seq>tgaaagaaaaactaagaatttttttttcagccaccgttatggtggcggaaaggggcggagcaaagtagcggcagcctctttccgatctgttttaatatataaatatatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattgattcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggtttaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgtcaccaacattgttcttggtgcatcgtctaggagtgctcttggcaggaaatattggactcatgatgtgccaacattggtaaataaggctgcaccagagttttgttctgtctacgtagtttcaaaaggcaagcaacaatctgtccgaccagcagcaaaatctcttccttcttgtgtaccagcaagacaaccatcttcgtcagcatggtcagcacctangtcaagtaactctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28307" stop="25336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28007" g_stop="27737" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26475" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="357" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26474" i_stop="26025" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26024" g_stop="25903" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="479" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25902" i_stop="25825" i_length="78">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25824" g_stop="25636" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="668" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E334235" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28007" e_stop="27737"/>
          <exon e_start="26560" e_stop="26475"/>
          <exon e_start="26024" e_stop="25903"/>
          <exon e_start="25824" e_stop="25636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATC</genome_strand>
        <mrna_strand>TGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTANGTCAAGTAACTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364341" ref_strand="+" ref_description="SGN-E364341 [cLPP-20-N2]">
      <seq>aaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaaggatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagtgttaccaacattgttcttggtgcatcgtctagaagtgctcttggcaggaaatattggactcatgatgtgccaacattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28301" stop="25492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28001" g_stop="27737" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26475" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="350" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26474" i_stop="26025" i_length="450">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26024" g_stop="25903" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="472" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25902" i_stop="25825" i_length="78">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25824" g_stop="25792" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="505" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E364341" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28001" e_stop="27737"/>
          <exon e_start="26560" e_stop="26475"/>
          <exon e_start="26024" e_stop="25903"/>
          <exon e_start="25824" e_stop="25792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAGGTTATTATCTCTCAGTGTATCTGTTGCTTATTCTTCATGACAAAGAAAAGAGCTTGGCTTATATTACTTCTGTTGCAGGAAATATTGGACTCATGATGTGCCAACATTGGT</genome_strand>
        <mrna_strand>AAAAACTAAGAATTTTT-TTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTTACCAACATTGTTCTTGGTGCATCGTCTAGAAGTGCTCTTGGCAG..............................................................................GAAATATTGGACTCATGATGTGCCAACATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361486" ref_strand="+" ref_description="SGN-E361486 [cLPP-6-I11]">
      <seq>aaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggccaaaaattcaccaaagcgtagctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgcacgcaaaagggttattgcagatagtagtgaaagagattgtcattgagaatactgaagcatcgaagggacttcttgagtacatcaacagtaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28301" stop="25650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28001" g_stop="27733" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27732" i_stop="26561" i_length="1172">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26475" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="354" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26474" i_stop="26035" i_length="440">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.740" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26034" g_stop="25950" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="439" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E361486" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28001" e_stop="27733"/>
          <exon e_start="26560" e_stop="26475"/>
          <exon e_start="26034" e_stop="25950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGGGTACGTGAATTAATCCATGATAAGTTAGCACTCTCTTTTCCTCTCCAAGCATGGTTTGATCCTTTATTTTCCTTTGTAATCCGTTATGTTTAACACAATACTCCTATATTTGAAAGCTCGTTAACTTTAACCTTCGCATTTTACAATATCGAAGAAGTCTTGATTTGTCTTTTACGTTAGTAACATAGGTTAAGAAGCTTAAACACCACATTGTCCTCTGTATGTTTTTTAAGATCACTAGAATTAGGTGTTTTTGCCTCGTAAAGTCTGTTTTATGTTCTTTTTTCCTTCTAAAACCTCTTATTCTTCTCAAGTGTTTTGCACATTCAAAGTAATTTATAAGTTACCTAGTGTAGCATCATGTAAGTTTAGAATGAAACCGAGCTACTTCCATGATGGAAATTTAACTAAATCCTACTTTATTCTAAATGGTTGTTGAGGTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</genome_strand>
        <mrna_strand>AAAAACTAAGAATTTTT-TTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGCCAAAAATTCACCAAAGCGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361275" ref_strand="+" ref_description="SGN-E361275 [cLPP-15-C19]">
      <seq>aaaggggcggatcttattaacggtagcctccttccgatctgttttaatatataaatttatgaacaaaaaatgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataaaaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaattcttgtattggttcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggattaagtgattaagctactcaaaatgtcttgacacctttcaaggcttattctgcacgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28259" stop="26176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27959" g_stop="27737" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26476" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="308" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E361275" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27959" e_stop="27737"/>
          <exon e_start="26560" e_stop="26476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAG</genome_strand>
        <mrna_strand>AAAGGGGCGGATCTTATTAACGGTAGCCTCCTTCCGATCTGTTTTAATATATAAATTTATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAAAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATTCTTGTATTGGTTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATTAAGCTACTCAAAATGTCTTGACACCTTTCAAGGCTTATTCTGCACGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363520" ref_strand="+" ref_description="SGN-E363520 [cLPP-4-B18]">
      <seq>tcaaacgtgaaagaaaaactaagaattttttttcagccaccgttatggtggcggaaaggggcggagctaagtagcggcagcctctttccgatctgttttaatatataaatttatgaacaaannntgggttcccaaaatcctggagaagatcctattgttgttgccgttgataaagataagaatagcagctctgcggtgaaatgggctattgataatctgcttggaaacaatcaaatccttgtattggttcatgttcgggtcaaaaattcaccaaagcctactttagattcaaatggaggattaagtgatgaagctactcaaaatgtcttcacacctttcaaggcttattctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="28314" stop="26184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28014" g_stop="27737" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26560" g_stop="26484" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="354" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E363520" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28014" e_stop="27737"/>
          <exon e_start="26560" e_stop="26484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAGGTACCTTCTCTCTCTTTCATTTACATTTCTAGGTTTAGTTTGCCCTAATGGTGAAATGGCAATGAATTGAATTGAAATATGTAATCGTTGATAGAGTAATCCGACACATGTGCTGGTGAAAGATAATAGGTATCCGGGAAATTAGTTTAGGATAATGTAATTGGGATCTATAAATTGGTGATGAGAAAGGGGACCTTGACGTAACTATTAAAGTTGTTGTAGGAGGTTATGAGTTTGAATCCTAGTAGAAACAACCTCTCGTAGAAATGCTAGTTTAGGGTAATGTAATAGGGATCTATAGATTGATAATGAGAAAGGGGACCTTGACGTAACTGGTAAAGTTGTTGTAGGAGGTTACGAGTTTTGATTCGTAGTAGAAACAACCTCTTGTAGAAATGTAGGTTCCCTACGATAGACCTTTGTAGTCCGGTCATAGTGGGAGCTTAGTGCGTCCTTTTTGTATTCATTTGATAATGTAATTGGGATCAGTAATTTGGTTTGGGAAGAAATTTGGAATTTTATTTTATATTAAAAAAGAAGTCTTTGTAAGGGGAACTTATTGCTTTTTAGTGCACCTATGATTGTTGGTTCAATGTGCATTTCGTTTATCACCAAGGAATACTAAAATCGATAGGATCCTTTCCTTGATCCTAGTACTGGACGGAGTTAATAGGTACGCGGAGTTAGTTGAGGTGCGCACAGACGGACTCAAACACTACTTTTTCTTATTATAAAAAAGTCATTTATTTGATAAATGTAATTGGGATCAATAATTTTGTTTGGGAAGAAATTTAAAATTCTATTTTCTATTAGAAAATAAGTCTTTGTTAGAGGAACTTAAATGCTTTTTATTGCACCAACATTAGTTAAATGTGCTTTTGATTTACGGCGAAGAGTGTGGTAGATGGATAGGATCTCTCCGCGCTTAACCAAAGGTATCAGGTTTGAGTCTTAAGAATGGAGAAACTCTTGTTAGGGAGTTGTTTCCCTTTTATGGACCCTATAGGACCCAAAACCGCATTAGTCAAGCTAGTGGGCTTTGAATATTGGATTAATTTTTTTAAAAAGAAGTTTTTTTGATTTCCCAAATTGCCATCTTTCTATATCTCAAATAATTTGAACTTTTGGTTGTTTACTGTGACACTGATGCTAATTTGTTGGTGGAAATGAAGCTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCA</genome_strand>
        <mrna_strand>TCAAACGTGAAAGAAAAACTAAGAA-TTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCTAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATTTATGAACAAANNNTGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGGTTCATGTTCGGGTCAAAAATTCACCAAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTTTAGATTCAAATGGAGGATTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618903" ref_strand="+" ref_description="SGN-E618903 [69586]">
      <seq>tcacatcaacatcggttgttcacaacgacacagtggggacgagttgaggtgtctagatgtgtattctcaaagttgaagtgtataattgtccgttgaggccaaggtaagtcttctatttgtgttacattttttttaccttgggataaatataatggctattattggagtaggtttctgtatttattttagtacatgctccattctatatgtaattttctttatttagctatttgaagtagcaaaaactactacattataatcaaatgtaatatggtcattctgcctccatagttaaaaggcactatgtaggtattttaacctactgtttgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="29630" stop="28694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29330" g_stop="28995" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="346"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E618903" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29330" e_stop="28995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATCAACGTCGGTTGTTCACAACGACACAGTGGGGACGAGTTGAGGTGTCTAGATGTGTATTCTCAAAGTTGAAGTGTATAATTGTCCATTGAGGCCAAGGTAAGTCGTCTATTTATGTGTTACATTTTTTTCTTTACCTTGGGATAAATATAATGGCTATTATTGGAGTAGGTTTCTATATGTATTTTAGTGAATGTTCCATTATGTATGTAATTTTCTTTATTTAGCTATTTGAAGTAGCAAAAACTACTACACTATAATCAAATGTAATATGGTCCTTATGCCTCCATAGTTAAAAGGCTCTATGTAGGTATTTTAATCTATTGTTTGAC</genome_strand>
        <mrna_strand>TCACATCAACATCGGTTGTTCACAACGACACAGTGGGGACGAGTTGAGGTGTCTAGATGTGTATTCTCAAAGTTGAAGTGTATAATTGTCCGTTGAGGCCAAGGTAAGTCTTCTA-TT-TGTGTTACA--TTTTT-TTTACCTTGGGATAAATATAATGGCTATTATTGGAGTAGGTTTCTGTATTTATTTTAGTACATGCTCCATTCTATATGTAATTTTCTTTATTTAGCTATTTGAAGTAGCAAAAACTACTACATTATAATCAAATGTAATATGGTCATTCTGCCTCCATAGTTAAAAGGCACTATGTAGGTATTTTAACCTACTGTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698318" ref_strand="+" ref_description="SGN-E698318 [FA05DG05]">
      <seq>ccccttcatcatctgtgcctgaagagagcagaagtgaagggactatgtcgcttgatgtgatatctgaaaatgaaagcaactggattgctggtgatgctgttgttagggaaagtgaggatgatgattccttatcactggagggtgatcaaattctcgataattcgtgttccctgtcagtggtgagcgattgtagtagtttatgcgctgatgattttataggctttgagatagcgtctgacatagaaggtcaggatttcgtggattctcagaaaagcatcagccatgatgaacttattggtaagactggggttttggttgagtcagatgttgaggatactttgattagacccgcggcagttcctgagagacttgaggagcagatcactgataaagatttgaatgcaacagtcagccgcagtgtttttgaagtggactacatacccttatggggatatacatctatctgtggaaggagaccagaaatggaagacgcattcgcaactgttcctagattcatgaaaattcctctaccgatgttaattggtgatcgcgtgcttgatggactgtctagacgcttgagtcatttgacgactcatttctttggagtttatgatggccatggtggttctcaggtggcaaattactgccgagaccggattcatgctgtattggctgaggagttggaaacttttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="31933" stop="30549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31639" g_stop="31008" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31007" i_stop="30913" i_length="95">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30912" g_stop="30849" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="696" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E698318" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31639" e_stop="31008"/>
          <exon e_start="30912" e_stop="30849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAGGTCTCTGTCTCTCTTTCTGACTTTGGTTCATCCAATTCCTTGTTACCTAAATATGAACAAAAATTAATTGATTCCTTTTTTTTTGTCTCTTTCAGGTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</genome_strand>
        <mrna_strand>CCCCTTCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG...............................................................................................GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598602" ref_strand="+" ref_description="SGN-E598602 [74276]">
      <seq>cttgaagtgactaaaagtagtgttggaactgcaactgttcagttgggattctctgaggcatcgtcttcgactattgctagtgctgctgctgggctaagcgcggcgatggcagctcaattggtgtggacaccaattgatgttgtgagtcagaggttgatggttcaagggaagtggaaattctagctgtggtgttgttggattgaagtgttatgacggtgggatcgatgcgtttaggaagattatttgtagtgatggtttgaggggattgtatagaggatttggtatttcaatactgacttatgcaccttcaaatgctgtgtggtggggttcatactcgatagctcatagattgatttggggctcaattggttgttattgttgcaagaaagacgacgagggcggttataagccagatgggaaggcaatgcttgcagttcaaggagtgagtgcagctatggctagtggagtgtctgcattagtgacaatgccactcgacaccgtgaaaacgagattacaagtattagatgatgattgttgtagtagtagtagtagtagtagtaggagaacaccaacagttttacaaacagtgaagaatttacgtgaaggaaggtggatttagtgccttgttatagcaagattaagtccaagatgggcatcaatgtcattgtctgcaataactatgatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="39094" stop="40252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39394" g_stop="40070" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E598602" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39394" e_stop="40070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAGTAACTAAAAGTAGTGTTGGAACTGCAACTGTTCAGTTGGGATTCTCCGAGGCATCGTCTTCGACTATTGCTAGTGCTGCTGCTGGGCTTAGCGCGGCGATGGCTGCTCAATTGGTGTGGACACCAATTGATGTTGTGAGTCAGAGGTTGATGGTTCAA-GGAAGTGGGAATTCTAGTTGTGGTGTTGTTGGATTGAAATGTTATAGCGGTGGGATTGACGCGTTTAGGAAGATTATTCGTAGTGATGGCTTGAGGGGATTGTATAGAGGATTTGGTATTTCAATACTGACTTATGCACCTTCAAATGCAGTGTGGTGGGGTTCATACACTACAGCTCATAGATTGGTTTGGGGCTCCATTGGTTGCTATTGTTGCAAGAAAGACAACGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCTGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTCAAAACAAGATTACAAGTATTAGATGATGA---TTGT--T-GCAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTAC-TGAAGGAAGGTGGATTTAGTG-CTTGTTATAG-AGGATTAGGTCCAAGATGGGCATCAATGTCCATGTCTGCAATAACTATGATCAC</genome_strand>
        <mrna_strand>CTTGAAGTGACTAAAAGTAGTGTTGGAACTGCAACTGTTCAGTTGGGATTCTCTGAGGCATCGTCTTCGACTATTGCTAGTGCTGCTGCTGGGCTAAGCGCGGCGATGGCAGCTCAATTGGTGTGGACACCAATTGATGTTGTGAGTCAGAGGTTGATGGTTCAAGGGAAGTGGAAATTCTAGCTGTGGTGTTGTTGGATTGAAGTGTTATGACGGTGGGATCGATGCGTTTAGGAAGATTATTTGTAGTGATGGTTTGAGGGGATTGTATAGAGGATTTGGTATTTCAATACTGACTTATGCACCTTCAAATGCTGTGTGGTGGGGTTCATACTCGATAGCTCATAGATTGATTTGGGGCTCAATTGGTTGTTATTGTTGCAAGAAAGACGACGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCAGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTGACAATGCCACTCGACACCGTGAAAACGAGATTACAAGTATTAGATGATGATTGTTGTAGTAGTAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTACGTGAAGGAAGGTGGATTTAGTGCCTTGTTATAGCAAGATTAAGTCCAAGATGGGCATCAATGTCATTGTCTGCAATAACTATGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452669" ref_strand="+" ref_description="SGN-E452669 [cSTS-17-F11]">
      <seq>gatttggggctcaattggttgctattgttgcaagaaagacaccgagggcggttataagccagatgggaaggcaatgcttgcagttcaaggagtgagtgcagctatggctagtggagtgtctgcattagttacaatgccactcgacaccgtgaaaacgagattacaagtattagatgatgattgttgtagtagtagtagtagtaggagaacaccaacagttttacaaacagtgaagaatttagtgaaggaaggtggatttagtgcttgttatagaggattaggtccaagatgggcatcaatgtcaatgtctgcaataactatgatcactacttatgagttcctcaagaaactatctaccaagaattaagaaacctttgtttgatgaaatcatggattgacattgagcacagataccaatgagggaaaatggagcccttctgaacacacggcgaaatctgaattagtctggccagtgtttatatggcgcgaatccagattagtcgggctagtgagataacaatggtttaaacctaaagaaaagggaagatgttctatatttagaatcctattgaagtttacttttttcttatgttttacctaacctaatgtaaatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="39444" stop="40669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39744" g_stop="40372" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E452669" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39744" e_stop="40372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGGGCTCCATTGGTTGCTATTGTTGCAAGAAAGACAACGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCTGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTCAAAACAAGATTACAAGTATTAGATGATGATTGTTGCAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTACTGAAGGAAGGTGGATTTAGTGCTTGTTATAGAGGATTAGGTCCAAGATGGGCATCAATGTCCATGTCTGCAATAACTATGATCACTACTTATGAGTTCCTCAAGAAACTATCCACCAAGAATCAAGAAACCTTTGTTTGATGAAATCTTGGATTGACATAGAGGCACAGATGCCAATGAGGGACAATGGAGCCATTCTGAACACACAACG-AATCTGAATTAGTTTGGCCAGTGTTTATATGGCGCGAATCCAGAGTAGTCGGGCTAGTGGTTTAAAAACCTAAAGAAAAGGGTAG-ATGGAGAAGATGTTTCTATATTTAGAATCCTTTTGAAGTTTTC-TTTTTCTTATGTTTTTACCTAACCTAATGTAAATTTTTGTAAAAAAGGT</genome_strand>
        <mrna_strand>GATTTGGGGCTCAATTGGTTGCTATTGTTGCAAGAAAGACACCGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCAGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTGAAAACGAGATTACAAGTATTAGATGATGATTGTTGTAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTAGTGAAGGAAGGTGGATTTAGTGCTTGTTATAGAGGATTAGGTCCAAGATGGGCATCAATGTCAATGTCTGCAATAACTATGATCACTACTTATGAGTTCCTCAAGAAACTATCTACCAAGAATTAAGAAACCTTTGTTTGATGAAATCATGGATTGACATTGA-GCACAGATACCAATGAGGGAAAATGGAGCCCTTCTGAACACACGGCGAAATCTGAATTAGTCTGGCCAGTGTTTATATGGCGCGAATCCAGATTAGTCGGGCTAGTGAGATAACAA-TGGTTTAAACCTAAAGAAAAGGGAAGATG-TTCTATATTTAGAATCCTATTGAAGTTTACTTTTTTCTTATG-TTTTACCTAACCTAATGTAAATTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448798" ref_strand="+" ref_description="SGN-E448798 [cSTS-4-B15]">
      <seq>gatttggggctcaattggttgctattgttgcaagaaagacaccgagggcggttataagccagatgggaaggcaatgcttgcagttcaaggagtgagtgcagctatggctagtggagtgtctgcattagttacaatgccactcgacaccgtgaaaacgagattacaagtattagatgatgattgttgtagtagtagtagtagtaggagaacaccaacagttttacaaacagtgaagaatttagtgaaggaaggtggatttagtgcttgttatagaggattaggtccaagatgggcatcaatgtcaatgtctgcaataactatgatcactacttatgagttcctcaagaaactatctaccaagaattaagaaacctttgtttgatgaaatcatggattgacattgagcacagataccaatgagggaaaatggagcccttctgaacacactgcgaaatctgaattagtctggccagtgtttatatggcgcgaatccagattagtcgggctagtgagataacaatggtttaaacctaaagaaaagggaagatgttctatatttaaaatcctattgaagtttactttttcttatgttttacctaacctaatgtaaatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="39444" stop="40669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39744" g_stop="40372" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E448798" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39744" e_stop="40372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGGGCTCCATTGGTTGCTATTGTTGCAAGAAAGACAACGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCTGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTCAAAACAAGATTACAAGTATTAGATGATGATTGTTGCAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTACTGAAGGAAGGTGGATTTAGTGCTTGTTATAGAGGATTAGGTCCAAGATGGGCATCAATGTCCATGTCTGCAATAACTATGATCACTACTTATGAGTTCCTCAAGAAACTATCCACCAAGAATCAAGAAACCTTTGTTTGATGAAATCTTGGATTGACATAGAGGCACAGATGCCAATGAGGGACAATGGAGCCATTCTGAACACACAACG-AATCTGAATTAGTTTGGCCAGTGTTTATATGGCGCGAATCCAGAGTAGTCGGGCTAGTGGTTTAAAAACCTAAAGAAAAGGGTAG-ATGGAGAAGATGTTTCTATATTTAGAATCCTTTTGAAGTTTTCTTTTTCTTATGTTTTTACCTAACCTAATGTAAATTTTTGTAAAAAAGGT</genome_strand>
        <mrna_strand>GATTTGGGGCTCAATTGGTTGCTATTGTTGCAAGAAAGACACCGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCAGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTGAAAACGAGATTACAAGTATTAGATGATGATTGTTGTAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTAGTGAAGGAAGGTGGATTTAGTGCTTGTTATAGAGGATTAGGTCCAAGATGGGCATCAATGTCAATGTCTGCAATAACTATGATCACTACTTATGAGTTCCTCAAGAAACTATCTACCAAGAATTAAGAAACCTTTGTTTGATGAAATCATGGATTGACATTGA-GCACAGATACCAATGAGGGAAAATGGAGCCCTTCTGAACACACTGCGAAATCTGAATTAGTCTGGCCAGTGTTTATATGGCGCGAATCCAGATTAGTCGGGCTAGTGAGATAACAA-TGGTTTAAACCTAAAGAAAAGGGAAGATG-TTCTATATTTAAAATCCTATTGAAGTTTACTTTTTCTTATG-TTTTACCTAACCTAATGTAAATTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422670" ref_strand="+" ref_description="SGN-E422670 [STM-40-F12]">
      <seq>gatttggggctcaattggttgctattgttgcaagaaagacaccgagggcggttataagccagatgggaaggcaatgcttgcagttcaaggagtgagtgcagctatggctagtggagtgtctgcattagttacaatgccactcgacaccgtgaaaacgagattacaagtattagatgatgattgttgtagtagtagtagtagtaggagaacaccaacagttttacaaacagtgaagaatttagtgaaggaaggtggatttagtgcttgttatagaggattaggtccaagatgggcatcaatgtcaatgtctgcaataactatgatcactacttatgagttcctcaagaaactatctaccaagaattaagaaacctttgtttgatgaaatcatggattgacattgagcacagataccaatgagggaaaatggagcccttctgaacacacggcgaaatctgaattagtctggccagtgtttatatggcgcgaatccagattagtcgggctagtgagataacaatggtttaaacctaagaaaaagggagatggtctatatttagaatcctattgaagtttactttttcctatgttttacctaacctaatgtaatttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="39444" stop="40669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39744" g_stop="40369" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E422670" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39744" e_stop="40369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGGGCTCCATTGGTTGCTATTGTTGCAAGAAAGACAACGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCTGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTCAAAACAAGATTACAAGTATTAGATGATGATTGTTGCAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTACTGAAGGAAGGTGGATTTAGTGCTTGTTATAGAGGATTAGGTCCAAGATGGGCATCAATGTCCATGTCTGCAATAACTATGATCACTACTTATGAGTTCCTCAAGAAACTATCCACCAAGAATCAAGAAACCTTTGTTTGATGAAATCTTGGATTGACATAGAGGCACAGATGCCAATGAGGGACAATGGAGCCATTCTGAACACACAACG-AATCTGAATTAGTTTGGCCAGTGTTTATATGGCGCGAATCCAGAGTAGTCGGGCTAGTGGTTTAAAAACCTAAAGAAAAGGGTAGATGGA-GAAGATGTTTCTATATTTAGAATCCTTTTGAAGTTTTCTTTTTCTTATGTTTTTACCTAACCTAATGTAAATTTTTGTAAAAAA</genome_strand>
        <mrna_strand>GATTTGGGGCTCAATTGGTTGCTATTGTTGCAAGAAAGACACCGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCAGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTGAAAACGAGATTACAAGTATTAGATGATGATTGTTGTAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTAGTGAAGGAAGGTGGATTTAGTGCTTGTTATAGAGGATTAGGTCCAAGATGGGCATCAATGTCAATGTCTGCAATAACTATGATCACTACTTATGAGTTCCTCAAGAAACTATCTACCAAGAATTAAGAAACCTTTGTTTGATGAAATCATGGATTGACATTGA-GCACAGATACCAATGAGGGAAAATGGAGCCCTTCTGAACACACGGCGAAATCTGAATTAGTCTGGCCAGTGTTTATATGGCGCGAATCCAGATTAGTCGGGCTAGTGAGATAACAA--TGGTTTAAACCTAAGAAAAAGGGAGATG-GTCTATATTTAGAATCCTATTGAAGTTTACTTTTTCCTATG-TTTTACCTAACCTAATGTAATTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422671" ref_strand="+" ref_description="SGN-E422671 [STM-40-F12]">
      <seq>tttttttttttaaaaatttacattaggttaggtaaaacataagaaaaagtaaacttcaataggattctaaatatagaacatcttcccttttctttaggtttaaaccattgttatctcactagcccgactaatctggattcgcgccatataaacactggccagactaattcagatttcgccgtgtgttcagaagggctccattttccctcattggtatctgtgctcaatgtcaatccatgatttcatcaaacaaaggtttcttaattcttggtagatagtttcttgaggaactcataagtagtgatcatagttattgcagacattgacattgatgcccatcttggacctaatcctctataacaagcactaaatccaccttccttcactaaattcttcactgtttgtaaaactgttggtgttctcctactactactactactacaacaatcatcatctaatacttgtaatctcgttttcacggtgtcgagtggcattgtaactaatgcagacactccactagccatagctgcactcactccttgaactgcaagcattgccttcccatctggcttataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="40669" stop="39495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40372" g_stop="39795" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E422671" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40372" e_stop="39795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTTTTACAAAAATTTACATTAGGTTAGGTAAAAACATAAGAAAAAGAAAACTTCAAAAGGATTCTAAATATAGAAACATCTTCTC-CATCTACCCTTTTCTTTAGGTTTTTAAACCACTAGCCCGACTACTCTGGATTCGCGCCATATAAACACTGGCCAAACTAATTCAGA-TTCGTTGTGTGTTCAGAATGGCTCCATTGTCCCTCATTGGCATCTGTGCCTCTATGTCAATCCAAGATTTCATCAAACAAAGGTTTCTTGATTCTTGGTGGATAGTTTCTTGAGGAACTCATAAGTAGTGATCATAGTTATTGCAGACATGGACATTGATGCCCATCTTGGACCTAATCCTCTATAACAAGCACTAAATCCACCTTCCTTCAGTAAATTCTTCACTGTTTGTAAAACTGTTGGTGTTCTCCTACTACTACTACTACTGCAACAATCATCATCTAATACTTGTAATCTTGTTTTGACGGTGTCGAGTGGCATTGTAACTAATGCAGACACTCCACTAGCCATAGCTGCACTCACTCCTTGAACAGCAAGCATTGCCTTCCCATCTGGCTTATAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTAAAAATTTACATTAGGTTAGGT-AAAACATAAGAAAAAGTAAACTTCAATAGGATTCTAAATATAG-AACATCTTCCCTTTTCTTTAGGTTT-AAACCATTGTTATCTCACTAGCCCGACTAATCTGGATTCGCGCCATATAAACACTGGCCAGACTAATTCAGATTTCGCCGTGTGTTCAGAAGGGCTCCATTTTCCCTCATTGGTATCTGTG-CTCAATGTCAATCCATGATTTCATCAAACAAAGGTTTCTTAATTCTTGGTAGATAGTTTCTTGAGGAACTCATAAGTAGTGATCATAGTTATTGCAGACATTGACATTGATGCCCATCTTGGACCTAATCCTCTATAACAAGCACTAAATCCACCTTCCTTCACTAAATTCTTCACTGTTTGTAAAACTGTTGGTGTTCTCCTACTACTACTACTACTACAACAATCATCATCTAATACTTGTAATCTCGTTTTCACGGTGTCGAGTGGCATTGTAACTAATGCAGACACTCCACTAGCCATAGCTGCACTCACTCCTTGAACTGCAAGCATTGCCTTCCCATCTGGCTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695195" ref_strand="+" ref_description="SGN-E695195 [LH_Ea05O09](-)">
      <seq>aaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttattgaggtccatcctttgtgaagtcatgaaagatctttttgcggtatgagaagtggatttcttatgggaagctctttgatgccatatgttctattctacattacaattatctattatctagttgcaagaatgttgttgtctagtgtctttttctagtatgtcgtgctgtgaatgatgtaggttgccactctaaattagtcgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctggactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaatcttttgtttcctgtggcctgcaatttcttttgttccctctcccctcttatttgattcattctgaagtagctgatacagttcagtgcacgaagcatcttgtgtttacgtgggttcgggaaaggactgtatgcaagggatataatgtggttagtacatcttaattcttgaagtaacaagtctagctgtgtatttgattaagctatttcaagggcctatatcttttttggttttctttctcatgtgcttgattggtttgaagtttaactaatttggatttacgcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43510" stop="42052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43210" g_stop="42352" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42351" i_stop="42209" i_length="143">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42208" g_stop="42198" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="866" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E695195" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43210" e_stop="42352"/>
          <exon e_start="42208" e_stop="42198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGC-----ATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTA-TT-----GCCTATATATTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAAGTTCCACTTTGGAGGGTAAATTAAGTGTATGGTGACTCCATATCTGAACTCGAATGTAAGACTCCTTTCGATTTTACCATAACCTTTGGTGTAATGAATACCTTGCAATCAAATTTTGCTCTTTTCTCTTTTTGTTTTCGTAGAAGGAAAATAT</genome_strand>
        <mrna_strand>AAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTATTGAGGTCCATCCTTTGTGAAGTCATG---A-----AAGATCTTTTTGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTTGATGCCATATGTTCTATTCTACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGTGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCACTCTAAATTAGTC---GTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGGACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTCTTTTGTT-CC-CT-CTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTTGTGTTTACGTGGGTTCGGGAAAGGACTGTATGCAAGGGATATAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTAAGCTATTTCAAGGGCCTATATCTTTTTTGGTTTTCTTTCTCATGTGCT-TGATTGGTTTGAAGTTTAACTAATTTGGATTTACGCTTAAAA...............................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695196" ref_strand="+" ref_description="SGN-E695196 [LH_Ea05O10](-)">
      <seq>aaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttattgaggtccatcctttgtgaagtcatgaaagatctttttgcggtatgagaagtggatttcttatgggaagctctttgatgccatatgttctattctacattacaattatctattatctagttgcaagaatgttgttgtctagtgtctttttctagtatgtcgtgctgtgaatgatgtaggttgccactctaaattagtcgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctggactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaatcttttgtttcctgtggcctgcaatttcttttgttccctctcccctcttatttgattcattctgaagtagctgatacagttcagtgcacgaagcatcttgtgtttacgtgggttcgggaaaggactgtatgcaagggatataatgtggttagtacatcttaattcttgaagtaacaagtctagctgtgtatttgattaagctattgcataggcctatatcttttttggttttctttctcatgtgtcgtgattgtttgaagtttaactaatttggatttacgctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43510" stop="42052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43210" g_stop="42352" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="855" r_length="855" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42351" i_stop="42209" i_length="143">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42208" g_stop="42199" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="865" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E695196" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43210" e_stop="42352"/>
          <exon e_start="42208" e_stop="42199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGC-----ATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTATTGCCTA----TATA--TTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAAGTTCCACTTTGGAGGGTAAATTAAGTGTATGGTGACTCCATATCTGAACTCGAATGTAAGACTCCTTTCGATTTTACCATAACCTTTGGTGTAATGAATACCTTGCAATCAAATTTTGCTCTTTTCTCTTTTTGTTTTCGTAGAAGGAAAATA</genome_strand>
        <mrna_strand>AAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTATTGAGGTCCATCCTTTGTGAAGTCATG---A-----AAGATCTTTTTGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTTGATGCCATATGTTCTATTCTACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGTGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCACTCTAAATTAGTC---GTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGGACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTCTTTTGTT-CC-CT-CTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTTGTGTTTACGTGGGTTCGGGAAAGGACTGTATGCAAGGGATATAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTAAGCTATTGCATAGGCCTATATCTTTTTTGGTTTTCTTTCTCATGTGTCGTGATTG-TTTGAAGTTTAACTAATTTGGATTTACGCTAAAAA...............................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415695" ref_strand="-" ref_description="SGN-E415695 [STM-21-D16]">
      <seq>aagtcaaactcaaaggtggcacaacgtggtttncgaatctcagatcaagtattcaagaccacaaccaaaaagatgaggatgaagatggtttggatgaagatgacgagcaaggagaaacactatgtggtgcttgcggggaaaactatgcatctgatgaattctggatctgctgtgacatatgtgagatatggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagtaagagaacacgcccttgattgcacctgtgttattgaggttcatcctttgtgaagtcatgaaactgttaagatcttttcgcggtatgagaaatggatttcttatgggaagctcttcgatgccatatgttctattctacattacaatcatctattatctagttgcaagaatgtctagtttctttttctagtatgttgtggtgtgaatgatgtaggttaccactctgaattagttgtgtaggttgaagttattgtgtcatgactgttcaaatctcgagtagttgtctctgtactgttgagggaagccctttttctcagttatgtgatgttaaggagatattgttcttccccaaatttgttgtcaatcttttgtttcctgtggcctgcaatttctaaattccctctctccccctctgaaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43577" stop="42304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43261" g_stop="42617" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="650" r_length="635" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="696"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E415695" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415695" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43261" e_stop="42617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTACAACGTGG-TTCTGAATCTCAGATCAAGTATTCAAGACCACAACC-AAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTG</genome_strand>
        <mrna_strand>GTGGCACAACGTGGTTTNCGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAAGATGAGGATGAAGATGGTTTGGATGAAGATGACGAGCAAGGAGAAACACTATGTGGTGCTTGCGGGGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGATATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGTAAGAGAACACGCCCTTGATTGCACCTGTGTTATTGAGGTTCATCCTTTGTGAAGTCATG-AAACTGTTAAGATCTTTTCGCGGTATGAGAAATGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCTACATTACAATCATCTATTATCTAGTTGCAAGAA------TGTCTAGTTTCTTTTTCTAGTATGTTGTGGTGTGAATGATGTAGGTTACCACTCTGAATTA---GTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCGAGTAGTTGTCTCTGTACTGTTGAGGGAAGCCCTTTTTCTCAGTTATGTGATGTTAAGGAGATATTGTTCTTCCCCAAATTTG--TTGTCAATCTTTTGTTTCCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319672" ref_strand="+" ref_description="SGN-E319672 [cTOB-12-P15]">
      <seq>gtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgttaagatcttttcgcggtatgagaagtggatttcttatgggaagctcttcgatgccatatgttctattcaacattacaattatctattatctagttgcaagaatgttgttgtctagcgtctttttctagtatgtcgtgctgtgaatgatgtaggttgcctctctaaattagtcgttgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctgcactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccaaatttgttttgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43334" stop="42333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43034" g_stop="42634" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="413"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E319672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43034" e_stop="42634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCA</genome_strand>
        <mrna_strand>GTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217330" ref_strand="+" ref_description="SGN-E217330 [cLEL-21-L10](-)">
      <seq>actatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatggaaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgttaagatcttttcgcggtatgagaagtggatttcttatgggaagctcttcgatgccatatgttctattcaacattacaattatctattatctagttgcaagaatgttgttgtctagcgtctttttctagtatgtcgtgctgtgaatgatgtaggttgcctctctaaattagtcgttgtgtaggttgaagttattgtgtcatgactgttcaaatctcaagtagttgtctctgcactgttgagggaagccatttttctcagttatgtgatgttaagaagatgctgttcttccccccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="43437" stop="42349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43137" g_stop="42649" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="509"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E217330" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43137" e_stop="42649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCC</genome_strand>
        <mrna_strand>ACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGAAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538028" ref_strand="+" ref_description="SGN-E538028 [TUS-56-O23]">
      <seq>tgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagaagacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50980" stop="42638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50680" g_stop="50582" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="132" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="361" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="494" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="42938" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="818" r_length="324" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E538028" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50680" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="42938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTA</genome_strand>
        <mrna_strand>TGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAAGACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706475" ref_strand="+" ref_description="SGN-E706475 [FA30AC07]">
      <seq>ccctccattctctctctctgtctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtgtctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgcacctgcgttattgaggtttatcctttgtgaagtcatgaaaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51058" stop="42640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50758" g_stop="50582" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="210" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="439" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="572" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="42940" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="894" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E706475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50758" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="42940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGT</genome_strand>
        <mrna_strand>CCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691356" ref_strand="+" ref_description="SGN-E691356 [LH_Ea05O10]">
      <seq>ttctctctctctctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtatctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggaataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggcacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttgcaccagcagcaagagaacacgcccttgattgaacgtgcgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51048" stop="42674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50749" g_stop="50582" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="201" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="430" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="563" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="42974" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="851" r_length="288" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E691356" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50749" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="42974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTAT</genome_strand>
        <mrna_strand>TTCTCTCTCTCTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTATCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGAATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGAACGTGCGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691355" ref_strand="+" ref_description="SGN-E691355 [LH_Ea05O09]">
      <seq>cattatggctctctctctaagctttctctctctaaactttctcttctcatcagcaaagccatttctgtatctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggaataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggcacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgatgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgcggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtgtggttccatgggaagtgtgttaaaatcactcctgccagggctgagcatatcaagcagtacaagtgcccatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51053" stop="42717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50753" g_stop="50582" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="206" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="435" r_length="229" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="568" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="43017" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="813" r_length="245" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E691355" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50753" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="43017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTC-TCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTG</genome_strand>
        <mrna_strand>CATTATGGCTCTCTCTCTAAGCTTTCTCTCTCTAAACTTTCTCTTCTCATCAGCAAAGCCATTTCTGTATCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGAATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGATGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGCGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTGTGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456580" ref_strand="+" ref_description="SGN-E456580 [cSTS-29-N24]">
      <seq>atcagcaaagccatttctgtgtctcatgatggacggagctcagcagtacaatcctcgaactgttgaagaaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgtggaagaattttatcaacaatgtgacccagagaaggagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagcggaagaagtgcccccagagcttcctgagcctgctttgggcataaactttgcccgagatggcatgcaagagaaagactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgaggatgaagatgacgagcaaggagaaacactatgtggtgcttgcggggaaaactatgcatctgatgaattctggatctgctgtgacatatgtgagatatggttccatgggaagtgtgttaaaatcactcctgccagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51006" stop="42748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50706" g_stop="50582" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="159" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="388" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="521" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="43048" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="720" r_length="199" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E456580" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50706" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="43048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAA-GTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTG</genome_strand>
        <mrna_strand>ATCAGCAAAGCCATTTCTGTGTCTCATGATGGACGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTGGAAGAATTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCGGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTTGCCCGAGATGGCATGCAAGAGAAAGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACC--AA-A--A-GAT---GA------GGATGAAGATGACGAGCAAGGAGAAACACTATGTGGTGCTTGCGGGGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGATATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729756" ref_strand="+" ref_description="SGN-E729756 [LA22AA07]">
      <seq>cccaaaattttcattttccccctctcccttccctccattctctctctctgtctaagctttctctctctaaactttctctctcatcagcaaagccatttctgtgtctcatgatggatggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaacttcgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggtacaacgtggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgacgatgaagatggtttggatgaagatgatgagcaaggagaaacactatgtggtgcttgtggtgaaaactatgcatctgatgaattctggatctgctgtgacatatgtgaggtatggttccatgggaagtgtgttaaaatcactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51088" stop="42758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50788" g_stop="50582" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="240" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="469" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="602" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="43058" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="806" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E729756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50788" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="43058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCT</genome_strand>
        <mrna_strand>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436771" ref_strand="+" ref_description="SGN-E436771 [cSTA-1-E15]">
      <seq>gtctagctttctctctctaactttatctctcatcagcaaagccatttctgtgtctcatgatggacggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgtggaagaattttatcaacaatgtgacccagagaaggagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaactttgcccgagatggcatgcaagagaaagactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggcaaaccgtgggttctgaatctcagatcaagtattcaagaccacaaccaaaagatgaggatgaagatggtttggatgaagatgacgagcaaggagaaacactatgtggtgcttgcggggaaaactatgcatctgatgaattctggatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51039" stop="42808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50739" g_stop="50582" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="189" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="418" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="551" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43261" g_stop="43108" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="706" r_length="155" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E436771" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50739" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="43261" e_stop="43108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTACGTGAAACCCATATCGTCTAAATATTTATGGCAACTAAAGCCTACAACTAGATTCTTTTTGTATGAGTTTCTCTAAGTTCGCATGGGGAAGTGAATTGAGCCCCACGGCATCATCTCCCTTCATTATACTCATCCCGCTGAACATCCACTGATTGAATTGATCAGTTACATGTCACTTTATGTTGTGGAGTGGTGTGAAACGGCAGAGTAGCACTTCAAGGTGCTGAAGCGAAGCAGTTGAAGAGAAGTGTGTGCTTCAATGGCAGATGTATTGAAGTGGTGCGTAGCGTGAAGGCGCTTTTCTGTTTTAAAAGGTTTAATTTTTAAGAAAAAGGTTTAATTTCTGTGTTGCTGATTTTTTTTATTAACAGTGATTTCTTATTAACAGTGATTATTTTTCCGAAATCTTAGCAGTGATTAAAAAAATGGGTGACCCAGCTTCGAACCATGAGTAACTTTGATTTTGTTTCTCCCAATGGTCTATGGAGGATTTGTGTTATCTACTTTTTATTTTTTAATATAAACTTTACTTATATTTAGTCTCTCTCTATATATTTTGGACTTCTTTTACTTTAAATTGCTCATCACTTCAATGAAGCAAGCACTTCACTTATAGTCTGAAGCAAGGCCTTGTCGCCTTTTTCTCACTTCATGCTTTCCTGAACATTGCCATAGATAGACTGCATAAAGTCAAGCTTCACTTTTTGAGAGGGTCAAGAGTATAATAATTTATCAATTTTCTAAAGTTTTTAGCATCTTCAGGTTCGGTAAATTTTTTAGCAAAAAGGTAACCACCGCATCCGATCTTGATATCTACGAGTGCACATACCTTACAACAACCAATGTGTCATTGATTGAAACTAGGTTGAGTAGTAGTACAGGATGATGGTAATTTGAGCCTTAGAAGATCACTCTCGCACCTCAAGGTTAGGCCTACATGATGAGGACTCACCAACTTCTCAAAGATGCATGGTGAGTCCACATCATGTAAGCTAGTGTTTTATAAAGTGAGAAAAGGAAAGTGATGCATTAAGCAGAACAAACTTTTTCCATCTAAAGCGTGGTTTGATAAAAATATTAAATTTGCATAGACAAATAGCCAAAAACTCAATAGAAATATCATATTAAACAACAACATACTTAGTGAAATCCCACAAAAAGGGTCTACAGGTTCTCTGGTGAGGGTATAGTGTACATTCCTTACTCCAACTTCGTGGAGGTAGAGAGGTTCTTTCCAAAGATCCTGACGCTATTGCAACAATCAGTATGTGCAGTAAAAAGCAGAAGCAAGACAGTAAAAGAATAAAGCTACTACCACGAGACACTAGTAAGTCTAAACTCTACGGGAAGCAAGACAGTTATTCACCAGCTATTGTTTGAGTTCGTCAAGCTCTATGGTGAATTGCTACATGAAATTGCTCAATATAATCCCAACTTATATGTAATATGAAGCATATGACAAAAACAGTTATTGGTGTGGGGCTTGGTTTACTTCCCCTTGTGAGTTTAGAGACACACATGAAAGAAGTTAGTTGTGGGCTTCGATAGCCAAAGATTGGGAAGCTCATGTATATGACCTCTTAATGATGTGTGGCTTTTTGAGGAAAATTATGCGGGCTCAACCCAAAATGGTCAATATCCATCATTTTATGTGGATTTTTGGGTTGTCTTAGCCCATACTCCAAATGTCTACTCACCCCCCCCCCCCCAACACACACACACGTTGGGCATGAGGGTAGCCATTGAAGAATTAAAAAGTCTCACATTGGTGGTTTAAATGAGATGGCTGGTCTCTTTAGAAGACTTGAGCAATCTTGCTCCCTTTGAGCTAACTTTTGGATTTGAGTTAGGCTCAAGATTCATTTTTTACATGGTATCAAGCTCATGTGCATTCCAACCTATGATATACCAATATTGTTGAGCACCCATATTAATTTTTTTTGGACATGAGGCTTGGTGTTAAGTCCCTCATCAATAGGATGATAAAATTTGGACTCCTTTAATGGACTTGGGCAATCCTCTCCTAATGAATTAAGTTTTGGGGTTGAATTAAGCCTAAGATTCATTCCTTTACATGTCATAAATGATATACTTAGATTTTTTAAAATTTTTTGAAAAGAGCCAACTTGTATTATAAACAAATAATACACCGAGTGTTCTAAAGAAGAAAATGCCCCTCACTGAGGACAATGTTCTGCTGGATCTATAGAGGTACTGTAGAATCAGATGTTGGTTTGATAGTTTCTGGCTATTGAGCAGAATTCAATGGAATGGCTTCCTCAACATTTAAGGATCCCACTTCTTTGTTTCCTTGCTCTGCATGTTCATCTAATTCTAATCTACTGTCCACTTGAATGATTGACATAGCATCATCATCCCTTGGTGTCACATCCTGTGGCTCTTGATCAAGTCCTTTTCCATCGATATGTAAATCCATTGATGAGGTTCAAAAGGACTTTCTCCTCTGATATGTTGAAGGATCTGAGCTCCTTTAGTTTGGTTTGCTAGTATCTCAACAATAAAAGGATAAGAGGGCCTTTTGAAGGATGTGTGGGATGAACCCCTCACGTGACACATGTTTGGACAGCTGTATAATTCTTCAGCTTCTCTTACCTTCAATCTGACCCATTTTAGATGATTCTGGAGCTCTGTTTGTATCCATCCACTGCAGAGATCTCCAATATCTTGAAGGATCTTTTAAGACCAAAACAGAGTGGAAGTCCTACCAGTCTGACCCAAACTTCCTTCAGGCTTTCCTAGATGGAGTTTGAGAATGGCATCTACCAGTCTAAGTTGGAATTTCTGAGATTTCTAGAACCATTTCCCTTCAGTTCATGGTCTGCAGCTGTTGTTGGAAACTCAGAGAAACTGATTGCATCCCATCTCATATATTAATGTCATGGTGGTTTTTCCAGGAGCTATTTGCCCGTCAGCAAATCTCAGAAAGATGTACACTCTGTATCTCCTCTGATAGGCGTCCTACCATGCCCTATCCAGTGGTTCATTCTGAGCTTTTTTGGCATCTTCAGGAACAATTAAGGATTTCCCTTTCCTGTTTACGCTAGCAGCATTCATTTCTCTGGTAGACCATTTATTATTCTTGACAGTATCTGCATAAAGGAGCCCTTCCTCTGTGGTTTGATGTAATAGATTGGATGTCCTTACCTTTTTGACATCTATGAAATCGGTTAGCTAAAATATCCAACCACCCTGAATGAAAGTCTATTTTTGGTATTATAACTGTTTTCCTCTTTCCTTGCACATATAATGATACTGAAGTAACAACCAAATTTGTTTTAAGTTTCTTGAAAAGAAAAACTCAAAAGTAATGGTTGTGGAATTTCCATCTCCTGACAGAGTTCCTCTTTGTTTTCGACTCTTCCTTCAGAGTGTGCTGTCCACTCCATTTCTTTTGACTGAAGCTAGCCCTTGTCATCATGTTTCAACCTCTTTTCACCCATTGTACCAAGTCTCAGCCCTTGAGACCTTCCTTGTGATGTCAAAAGATTTAGAGTCTATTGCAAATAAATGACAGCGCCACTCATGGCGAAAATCGAAATGTGAGATTGAAGAAGGGTGAGAGAATTCCGATGACAATTTTACTTGGATTTTATGCCTATTAGATTCTTGAATCATGGGTGTGAGTTTCTTCGGCATTTACCTCTCTATTTCAGCATTGTAATTGTACCCTCCAGTATTTGATACCTTATTTTTCTTATGTAAAATAGCTCCCTATTTGCTTCAAGATTTAGTCTAATGAGGGTTGTCAATGATGTTGCAAGTTTCCTTTTGGTCTTCAAGATGTGGCTGGATATTTCAATGGATTAAATGCACTTTGTTCAATTATGTTCTAGGTTTTTCCTGGCCCTTATCTCACTGGTACATAGGCTGTGTATGTCTTTCAGCTCATGAACCAAATTTTATCAGTTTTTCCAACCAACATTAATGGAGATTGAGTAGGCTAACTTAGCCCACTTAGTCCTTGAAGATTTGTGGGTTATTCCTAATTAAGCCATCCTCAAACTTTTTCTATTCAGGTTTATTGTGGCATTTGACACTTGTTAGTTTTATTGTGTCGATATTATTCTGTAAAAACTGCAAGTGGAATTACCATTTTTAACCTCAAATGATCTGATCACAGGTGGTACAACGT-GGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCT</genome_strand>
        <mrna_strand>GTCTA-GCTTTCTCTCTCT-AACTTTATCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGACGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTGGAAGAATTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTTGCCCGAGATGGCATGCAAGAGAAAGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAACCGTGGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGAGGATGAAGATGGTTTGGATGAAGATGACGAGCAAGGAGAAACACTATGTGGTGCTTGCGGGGAAAACTATGCATCTGATGAATTCTGGATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581574" ref_strand="+" ref_description="SGN-E581574 [6737]">
      <seq>ctctgtctgtctgtctagttttctctctctaactttctctctcatcagcaaagccatttctgtgtctcatgatggacggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgtggaagaattttatcaacaatgtgacccagagaaggagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtccccccagagcttcctgagcctgctttgggcataaactttgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaatttttgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggccacaacgttggtctctgaatctcagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51050" stop="42931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50751" g_stop="50582" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="201" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="430" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="563" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47685" i_stop="47436" i_length="250">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47435" g_stop="47402" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="596" r_length="33" r_score="0.559"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E581574" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50751" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
          <exon e_start="47435" e_stop="47402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAGGTATACTTGTGTGACAGATGGAAGTTTTGCCTTTTTTTGTTTGTTTTTGGATTGAATATGGTAGTGTTACATATTCTTCATAAAAAGCTCATTGCTATGAAGTGTGCACAGGAACATTTTCTAGCATTAATTTTTTATAATTGGACTTACTCCTTATATAGAGTTGGGCAGTCCTCCCCTCATTGACTAGCTATTGGGGGTGTGAGTTAGGTCTCCTCTTAAACTTAGAACTACGTGGCCCCATCACCAGTTCACCACAATGTCAATTTCCAAGATATCACTAC</genome_strand>
        <mrna_strand>CTCTGTCTGTCTGTCT-AGTTTTCTCTCTCT-AACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGACGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTGGAAGAATTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTCCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTTGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTTGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG..........................................................................................................................................................................................................................................................GTGGCCACAACGTTGGTCTCTGA-ATCTCAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415694" ref_strand="+" ref_description="SGN-E415694 [STM-21-D16]">
      <seq>gtctagctttctctctctaactttatctctcatcagcaaagccatttctgtgtctcatgatggacggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgtggaagaattttatcaacaatgtgacccagagaaggagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaactttgcccgagatggcatgcaagagaaagactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggtttgatagagctgataggagaaggttgttcaatatgataaatgatctccctacaattttcgaggttgtgtctgggacagccaagaaacaatcaaaagacaagtcatcaatgtcaaatcacagcagcaccaagtctaagtcaaactcaaaggtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51039" stop="47384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50739" g_stop="50582" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="189" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="418" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47686" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="551" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E415694" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50739" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG</genome_strand>
        <mrna_strand>GTCTA-GCTTTCTCTCTCT-AACTTTATCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGACGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTGGAAGAATTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTTGCCCGAGATGGCATGCAAGAGAAAGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267860" ref_strand="+" ref_description="SGN-E267860 [cLEI-12-K16]">
      <seq>gatggatggagctcatcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgttgaagagttttatcaacaatgtgacccagagaaagagaacctctgcctttatggatttcccagcgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaactatccccgagatggcatgcaagagaaggactggctctccttggttgctgtgcatagtgatgcatggttactttctgacgccttttatttcggcgctagatttgggtttgatagagctgatacgagaaggttgttcaatatgataaatgatctccctacaattctcgaggttgagtctgggacagccaagagacattcaaaagacaagtcatcaatgtcaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="50979" stop="47417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50679" g_stop="50582" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="131" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48341" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="360" r_length="229" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.829" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47818" g_stop="47717" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="462" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E267860" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50679" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48341"/>
          <exon e_start="47818" e_stop="47717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAGGTATGTTTCTTTTTTTAAAAAAACAAATCACTTTAGAGCTGATAGGTATCTATCTCAACTCACTTATGTACTTTCACACCTTGTAATATTTCCCTGCTGTTTCATCTGATATGGTTTACAAGTATGTGTCACTAATAAACACAATGGTGCAAGCACATGGCTTGTTAACTTATGTTATACACATTTATCTTGTAGCTAGTTCCTTTCCTATCTCTTCTCTACTTCAATCATATTGTTCTCTACTTCTATCATATTGTGGAGTTAAACTGATGCAATTATTGTTTCTATTGATTAATCTGTATATTGGGGTACCATTTTCTTTTTTTCAGCTTTATGGTGTAGGATATCTGCCGACTCCTGTCATTTACTTAATTTATTCCTTATTCTTGCAACTATAACAGCAAGACTGTACTTCTTGGGTTTGAACTCTTACGTGGGAGTGACTGAGTGAGATCGAGAGCTTTCATTTCTAAAATAAGCTTATTCATATTGTCTAAGTAGCTATTTTTTCTTGAGTTGCAGGAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCA</genome_strand>
        <mrna_strand>GATGGATGGAGCTCATCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTTGAAGAGTTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGCGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTATCCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGACGCCTTTTATTTCGGCGCTAGATTTGGGTTTGATAGAGCTGATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTCTCGAGGTTGAGTCTGGGACAGCCAAGAGACATTCAAAAGACAAGTCATCAATGTCAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453035" ref_strand="+" ref_description="SGN-E453035 [cSTS-18-N11]">
      <seq>ctctgtctagctttctctctctaactttatctctcatcagcaaagccatttctgtgtctcatgatggacggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgtggaagaattttatcaacaatgtgacccagagaaggagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgcccccagagcttcctgagcctgctttgggcataaactttgcccgagatggcatgcaagagaaagactggctctccttggttgctgtgcatagtgatgcgtggttactttctgttgccttttattttggtgctagatttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51043" stop="48057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50743" g_stop="50582" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="193" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48357" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="406" r_length="213" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E453035" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50743" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGT</genome_strand>
        <mrna_strand>CTCTGTCT-AGCTTTCTCTCTCT-AACTTTATCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGACGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTGGAAGAATTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTTGCCCGAGATGGCATGCAAGAGAAAGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCGTGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561849" ref_strand="+" ref_description="SGN-E561849 [19723]">
      <seq>ctctctgtctagtctagttttctctctctaactttctctctcatcagcaaagccatttctgtgtctcatgatggacggagctcagcagtacaatcctcgaactgttgaagaagtgtttagagattttaagggtcgaagagctgcacttgtcaaagcccttactactgatgtggaagaattttatcaacaatgtgacccagagaaggagaacctctgcctttatggatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtccccccagagcttcctgagcctgctttgggcataaactttgcccgagatggcatgcaagagaaggactggctctccttggttgctgtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51049" stop="48109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50749" g_stop="50582" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="200" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48409" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="361" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E561849" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50749" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCT-GTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCAT</genome_strand>
        <mrna_strand>CTCTCTGTCTAGTCTA-GTTTTCTCTCTCT-AACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGACGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTGGAAGAATTTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTCCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTTGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404618" ref_strand="+" ref_description="SGN-E404618 [PPC-14-L11]">
      <seq>agcttccctccattctctatctgtctgtctagttttctctctctaactttctctctcatcagcaaagccatttctgtgtctcatgatggacggagctcagcagtacaatcctcgaactggtgaagaagtgtttagagattttaaaggtcgaagagctgcacttgtcaaagcccttactactgatgtggaagaatttatcaacaatgtgacccagagaaagagaacctctgcctttatgnatttcccagtgaaagttgggaagtcaatttaccagctgaagaagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="51061" stop="48198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50763" g_stop="50582" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50256" g_stop="50224" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="214" r_length="32" r_score="0.909"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48569" g_stop="48498" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="286" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E404618" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50763" e_stop="50582"/>
          <exon e_start="50256" e_stop="50224"/>
          <exon e_start="48569" e_stop="48498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCCCTCCATTCTCTCTCTCTGTCT-AAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTGGTAAAAAAAAAAAACTAAACTCAAATTCACGATTTTGATAGTTGATATGTAACCCCTTTTTGATTTTTAGTTGTGGGTTTGTTTTTTATTTTTGTTTTGTTTTTGAGTTTTTTTGGGTGCTGTGCTAATTTTTTTTTTTTTGTTTATTTGTTGTTGTTTCATGCAAGTATATGACTTTTAACTCATAAATCACAATTTTTTGACAGTTTTTAAGTAACCCCTTTTTGTTATTTTAGTTTTTTTGGGTGTTGTGCTGGTTTTTTGTGTTTGTTTTATGTTAGTATATGACTTCAATTTGATTTTGTTTGATGTGGGGTTGTTGCAGATGTTGAAGAGTTTTATCAACAATGTGACCCAGGTAAAAAAAGAACTTTTTTCTTTTGGATTGTTGTGTGCATTTTTTTATGCTTTTGTTTTTACCGTATGTGTTTTTATATGTGATTGTTGTGGAGTTCCTGGTGCTAGTGTTTCAATGAATTAGTAATCAGTTTGTATATTTATGTTTACATGTTTACTTTTAAGTGAAACCACTTTGCAGTGTTACTGGTTTTTATTGTTCACATCAGATTGCAGTGTTTTACTGGTTCTTTTTTATAGTAAAATGAATGGTGCATTTTCTCTACCTTCGAAGGTAGGGATAGGGTTTGCGTACTCTCTACTCTCCCTAGACCCCATTTTGTGGGATTACACTTGGTATGTTGTTGCTGTTGTTGGTTGTATGCTTCAAATAACTATTTTAGTCTATTCTTCCTGTTATTGCATTTTACTGACCAGTTATGGAATAGTCATTTAATCCAAGTTTTCTCGAGTTGCTTTGATGTGTCACTTTGCTACTGGGCACTGTCTCAAAGTTTGGTGAAACAGTGACACCTTTTGAATGTCTTTTCTTATCTCAACAGTAGTTTACTAAGTGCAAGAGAAGTCATTTGTAGTGTCTTTGTTTAATAGTTCTTGCTAAACTTGGGTTAAGATTTATCGTGGACTTGCAATTTTCGATACTAAACTACCTCATTGTATAATTGTGCAACACAAATATCTCACAGATCTACAAAACAACCCCTAGTTCTACAAGTTTATTAAGAATCATCTTAGCAACATTTTTAATCAAGTTAGATAACTCTCTTTTAGCTGTTACCTGCCATCTCCTACCAGCATTGATATGTGTGTATTAGCTTATTGAGACTTAAGTAGATTGGAAGAAATGACCTATGGTTTTTTTCCCCGTTGAGACTTGAATCTTGATCTCCAAGGTTTGCACCCACTTTATTATGGACGAGGCCAGACAATTTGGGTTTCAACTTTCTCTTATGGTCTTGATACTCGGATTCTCTCTTTTTCGATGTAGATTTAATAGATGACAACAAAACAGAGGCATAAATTACAAATGAAGAGTACAAAGAAAAGATTAATTCAACTTCAGTACAAAAGCGATTAATAGCTTGCTTAGCCAAGCTTTTGTGAAGAAAAAAGTGCTTTTTAAAATTTTAAAAATGCTTATCTAAGGGAGTTTGGGTGTTTGGCTAAACTTCTAAGTAAAAAGTAATTGGTGTACAACTGAAACAACTTTAAAATTCAGGTCTAGATGGAAGCTCAATGAGTCTTGTGACCAGTGGACAAAGAGAGAAGAAATCCTTGGTCCAAAAGACTGTAGAGAAACCCGAGCTTATGGAGGGTAGGGGGGGTTTGTCCACATGGGTATCATGACATGCGGGCACGACAATGTTGCTAGAAATTTTGAATATTTCAGCTAGCAAAACAAACACATGCTCATGTGAGGAGAATAATATAGTAATTTTGACCCAGTTGCCCACGTTGGATTAAAAGGAAATTACAAGCAATCCATATCTATATGTAGCTATTTTCCAAGGCTACCTTCTACAGTTTCTTTCAATATTTTCAATTTTTCCAGACGCTATCTTGTCATTGCACAATGTATTGCATTACACTCTTGTGATTTATTCATAACCCAGTCTGAAGCTTAAACTATGTATTTTATTCTCAATCGAATGCAGAGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGC</genome_strand>
        <mrna_strand>AGCTTCCCTCCATTCTCTATCTGTCTGTCTAGTTTTCTCTCTCT-AACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGACGGAGCTCAGCAGTACAATCCTCGAACTGGTGAAGAAGTGTTTAGAGATTTTAAAGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG.....................................................................................................................................................................................................................................................................................................................................ATGTGGAAGA-ATTTATCAACAATGTGACCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAGAACCTCTGCCTTTATGNATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595157" ref_strand="+" ref_description="SGN-E595157 [38424]">
      <seq>ccaaaattggagcctgatactacagagtaggtcaaaccacacacatagttcaccttcttcagaagttgattcttgaaacatatgtatacgtagatgtagttcctttctatttttcgttcatcgtgttcttaaaattcgtttcagctcagaatggaactaagtctgtttatagacgtcaacttcattaaattcttttttttctgagctctttcgattatcagtaagagcaatgaactattgccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="52659" stop="51814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52359" g_stop="52107" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E595157" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52359" e_stop="52107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTA-TTTTCGTTCATCGTGTTCTTAAAATTTGTTTCAGCTCAGAATGGAACTAAGTCTGTTTATAGACGTCGACTTCATTAAATTCTTTTTTTTTTCTGTTCTCTTTCGATTATCAGTAAGAGCAATGAACTATTGCCTTATTTCCAG</genome_strand>
        <mrna_strand>CCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATATGTATACGTAGATGTAGTTCCTTTCTATTTTTCGTTCATCGTGTTCTTAAAATTCGTTTCAGCTCAGAATGGAACTAAGTCTGTTTATAGACGTCAACTTCATTAAATTC--TTTTTTTTCTGAGCTCTTTCGATTATCAGTAAGAGCAATGAACTATTGCCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698884" ref_strand="+" ref_description="SGN-E698884 [FA07DE12]">
      <seq>ttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatattcgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttttcttgtacagggaaactctcccgatgagttgcctgagcaactaataggcgctgtacgtgcatctcatatagaactctcagctgctgttgtaccaaaattggagcctgatactacagagtaggtcaaaccacacacatagttcaccttcttcagaagttgattcttgaaacatacgtatacatagatgtagttcctttctattttcgttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="57527" stop="51939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57227" g_stop="57209" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="121" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="166" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="307" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55083" g_stop="54988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="403" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54987" i_stop="54898" i_length="90">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54897" g_stop="54796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="505" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54795" i_stop="52441" i_length="2355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52440" g_stop="52239" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="707" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E698884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57227" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
          <exon e_start="55083" e_stop="54988"/>
          <exon e_start="54897" e_stop="54796"/>
          <exon e_start="52440" e_stop="52239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAGGTATGTGAATGGACCTTCACCTGCAAGATTTTTTTTTCTTGTTGATATATTTATCTGTACAGTTTGTTGAACTCTGTCAAAGTATGTTGGGTCCAACTATCTTGGAATGTTGGAATAATTTTGAGTTATATAGGTACAAGTATGAGATACGTCTTCTGTCCCATTTTATATTGCTCCATTATTATTTGGAGAAGTCAAAAATGTTTTGCATTGTACGATTTTTAAATACAGTAATAGAAAATTGTGACTTGTAATGCTTTCTATGTAGTTCTTGATTATGTATAAATTCATTTTAAAAACTAAGGAATTGATGTTCGAATAGAGACCTAAAGTCAGATGACTACTCCTCATACTTCTGGTCCTATCATTCATTTTGGGATGAGAAAGTAACAAAATGAATTAATGAAGTTAGTCTAATACTCTAATACATAAAACTTGAAAGTCGGATGTTTTCCGGTATAGACTTGTAAGTTGGATAGCTGGACTCCCATTTAAGTTACCATAAAGCCAGAAATTGATAACTAGATAGATAACAACAACATACACAATTTAAGTGGGGTCTGGGAACGGCAATGAGTACACAGCCTACCATACCTTTGTGAAGGTAGAGAGGTTGTTCCCGATAGACCTTCGGCTCAAGAAAAGGAAATATGGTAGTGAAGAAGTCATGTAGAAATAATAAAGAAAATCTTTACGTAAATTGCAGAGAATTTCCTGACTCAACCAAAAAGCTAGAAAAAGATTTCCTGATAAGAACATAGTAGTACACACCTTTGAATTGAGAAAAAAAGAAAAGGAGGCAGTAGCAACAAGAACAGAGCATCATTATAGTTTTATATTATACTCCCATAATACCTAATTAAATATTAACATTTCTCTGTTTGGTATATCCCAAAATAAGTATTCACTTTCTTAAAAAACAGATATCTATTCAAATATTATATGCGGAAGAAATTATGCACGGGGTACTTTTACACTTTTTGATAAACTTTTTTCCCTTGTAAACAATCTAAAAGTAGTGGCAAGGAACTTAATACTTACTCTTAGTGATAGTCAAAGCAAAACATTGATTTGAAGCAGATGGTTTAATAGGACAATCTCTCCTTCTTTTTCTATAATGATGCCATGGTGTTCGGATCTGCATGCACCTAGACTATTCTACTGGATACTTCTCATCTCCTAAGTCCCACCAACCTAGTTGCTCAGACTCTTCACTTTTGATGCCGCACCCATGTCGACAAGACGTGGGTGTAAGTGTGGGATACGTGTCCGATTTGGTCAACCGATTATGGGTACTTTGACCAAAATCGACGGGAAAAGTCTGGATAGTTTTTATGATTTCTGTAGTCAATACAGAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTCTATATAGAATTTTTTTTTTATGACAAGGGAAACTGCACCCGTATCCATTCATGGATACTTATCCCCGAATCTTAAAAATTAGATCATGAAGGATCCGACTTCCAAATCCGCACCCCTATCGGACACCCCCACCCGAGTCAGAGCAACTTAGCATCACCAACATAGGGACTAGGTAACTTTGCCCATCAAGGTTTTGTTGATATGAAATCTTTGTTCAAGAATATGGAAATCATGGGAAAACATAAGGAAGATAGGTGGACCATTCATTTCGGTAGGATGGAAATTAATCAACTGTACGATGCTTGATCTTCCAGTGATGGTTTCATCTCACTGCATAGAATATAGAAAGTTTTTCAATGTGGAGTGATTTCTTTATTGGAATGAAATCGTCACAGTGTCAAAAAAGCATTCAGGTTTACAGATAAGGCCTCTAGAACCATTTCACTCACCGCTCAAGTAATTCTCCACAAACACTATACAATATCTTGAACTTTAAGAATATTTAGCAGTGCCTGCATCGTTGTATGTAAAGTGGATTACAGTGCCAAATAAACTATCAAAAGGAAGCATTTGAATTACTAGAGCCTAGAGGGAAATAAAAAAGGGAACTCTTATCTGCTTAGTAATGAAGATGAATTAAAGGAGATATCCCAGTGTACTATTTTAGTTTGGTCATTGTATTTTCAGTGTATGTTCATGATTTTTTTGTAAACATTCATTTCTAGTCGAAAATTTCTGTAATAATAAAACTATATCCCCGCCATCCCCTATGCATCCTCCCTCCCTAATGACAAAAAGAAGATGAAATTGATTCGAAATGATGTGTTTGACATTTTCTTTCTCGAAGTCATGCAAATGTGTTATCCATCTTTTCTCTAAAAACTTCCTTACTAATTGTTACCTCTCAACGAGGTTGCTATGTATATGCTGAATCTGATAATGTCATTCGCTAATTTGTGTTAGGGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</genome_strand>
        <mrna_strand>TTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATTCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377138" ref_strand="+" ref_description="SGN-E377138 [TUS-21-G3]">
      <seq>agaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttttcttgtacagggaaactctcccgatgagttgcctgagcaactaataggcgctgtacgtgcatctcatatagaactctcagctgctgttgtaccaaaattggagcctgatactacagagtaggtcaaaccacacacatagttcaccttcttcagaagttgattcttgaaacatacgtatacatagatgtagttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="57571" stop="51955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57271" g_stop="57209" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="351" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55083" g_stop="54988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="447" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54987" i_stop="54898" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54897" g_stop="54796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="549" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54795" i_stop="52441" i_length="2355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52440" g_stop="52255" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="735" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E377138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57271" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
          <exon e_start="55083" e_stop="54988"/>
          <exon e_start="54897" e_stop="54796"/>
          <exon e_start="52440" e_stop="52255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAGGTATGTGAATGGACCTTCACCTGCAAGATTTTTTTTTCTTGTTGATATATTTATCTGTACAGTTTGTTGAACTCTGTCAAAGTATGTTGGGTCCAACTATCTTGGAATGTTGGAATAATTTTGAGTTATATAGGTACAAGTATGAGATACGTCTTCTGTCCCATTTTATATTGCTCCATTATTATTTGGAGAAGTCAAAAATGTTTTGCATTGTACGATTTTTAAATACAGTAATAGAAAATTGTGACTTGTAATGCTTTCTATGTAGTTCTTGATTATGTATAAATTCATTTTAAAAACTAAGGAATTGATGTTCGAATAGAGACCTAAAGTCAGATGACTACTCCTCATACTTCTGGTCCTATCATTCATTTTGGGATGAGAAAGTAACAAAATGAATTAATGAAGTTAGTCTAATACTCTAATACATAAAACTTGAAAGTCGGATGTTTTCCGGTATAGACTTGTAAGTTGGATAGCTGGACTCCCATTTAAGTTACCATAAAGCCAGAAATTGATAACTAGATAGATAACAACAACATACACAATTTAAGTGGGGTCTGGGAACGGCAATGAGTACACAGCCTACCATACCTTTGTGAAGGTAGAGAGGTTGTTCCCGATAGACCTTCGGCTCAAGAAAAGGAAATATGGTAGTGAAGAAGTCATGTAGAAATAATAAAGAAAATCTTTACGTAAATTGCAGAGAATTTCCTGACTCAACCAAAAAGCTAGAAAAAGATTTCCTGATAAGAACATAGTAGTACACACCTTTGAATTGAGAAAAAAAGAAAAGGAGGCAGTAGCAACAAGAACAGAGCATCATTATAGTTTTATATTATACTCCCATAATACCTAATTAAATATTAACATTTCTCTGTTTGGTATATCCCAAAATAAGTATTCACTTTCTTAAAAAACAGATATCTATTCAAATATTATATGCGGAAGAAATTATGCACGGGGTACTTTTACACTTTTTGATAAACTTTTTTCCCTTGTAAACAATCTAAAAGTAGTGGCAAGGAACTTAATACTTACTCTTAGTGATAGTCAAAGCAAAACATTGATTTGAAGCAGATGGTTTAATAGGACAATCTCTCCTTCTTTTTCTATAATGATGCCATGGTGTTCGGATCTGCATGCACCTAGACTATTCTACTGGATACTTCTCATCTCCTAAGTCCCACCAACCTAGTTGCTCAGACTCTTCACTTTTGATGCCGCACCCATGTCGACAAGACGTGGGTGTAAGTGTGGGATACGTGTCCGATTTGGTCAACCGATTATGGGTACTTTGACCAAAATCGACGGGAAAAGTCTGGATAGTTTTTATGATTTCTGTAGTCAATACAGAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTCTATATAGAATTTTTTTTTTATGACAAGGGAAACTGCACCCGTATCCATTCATGGATACTTATCCCCGAATCTTAAAAATTAGATCATGAAGGATCCGACTTCCAAATCCGCACCCCTATCGGACACCCCCACCCGAGTCAGAGCAACTTAGCATCACCAACATAGGGACTAGGTAACTTTGCCCATCAAGGTTTTGTTGATATGAAATCTTTGTTCAAGAATATGGAAATCATGGGAAAACATAAGGAAGATAGGTGGACCATTCATTTCGGTAGGATGGAAATTAATCAACTGTACGATGCTTGATCTTCCAGTGATGGTTTCATCTCACTGCATAGAATATAGAAAGTTTTTCAATGTGGAGTGATTTCTTTATTGGAATGAAATCGTCACAGTGTCAAAAAAGCATTCAGGTTTACAGATAAGGCCTCTAGAACCATTTCACTCACCGCTCAAGTAATTCTCCACAAACACTATACAATATCTTGAACTTTAAGAATATTTAGCAGTGCCTGCATCGTTGTATGTAAAGTGGATTACAGTGCCAAATAAACTATCAAAAGGAAGCATTTGAATTACTAGAGCCTAGAGGGAAATAAAAAAGGGAACTCTTATCTGCTTAGTAATGAAGATGAATTAAAGGAGATATCCCAGTGTACTATTTTAGTTTGGTCATTGTATTTTCAGTGTATGTTCATGATTTTTTTGTAAACATTCATTTCTAGTCGAAAATTTCTGTAATAATAAAACTATATCCCCGCCATCCCCTATGCATCCTCCCTCCCTAATGACAAAAAGAAGATGAAATTGATTCGAAATGATGTGTTTGACATTTTCTTTCTCGAAGTCATGCAAATGTGTTATCCATCTTTTCTCTAAAAACTTCCTTACTAATTGTTACCTCTCAACGAGGTTGCTATGTATATGCTGAATCTGATAATGTCATTCGCTAATTTGTGTTAGGGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTT</genome_strand>
        <mrna_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466014" ref_strand="+" ref_description="SGN-E466014 [cPRO-22-N18]">
      <seq>atcaagaggtaatgccacccagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggcaaccttcgacgtgatgaccgtgataatagtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacggatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaattgtaaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggatcatggattgtgcgtcagagtgttggaagtactccttgtttactggggaaggcagttgactgcaactatatccgcggtcccaagtatttggaaattgatgttgacattggttcttccactgtggcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttttcttgtacagggaaacacccccgatgagttgcctgagcaactaataggcgctgtacgtgcatctcatatagaactctcagctgctattgtaccaaaattggagcctgatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="57803" stop="52038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57599" g_stop="57592" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="48" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.558" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="203" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="305" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="350" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="0.96"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="491" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55083" g_stop="54988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="587" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54987" i_stop="54898" i_length="90">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54897" g_stop="54796" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="689" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54795" i_stop="52441" i_length="2355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52440" g_stop="52338" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="792" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E466014" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57599" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
          <exon e_start="55083" e_stop="54988"/>
          <exon e_start="54897" e_stop="54796"/>
          <exon e_start="52440" e_stop="52338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAGGTATGTGAATGGACCTTCACCTGCAAGATTTTTTTTTCTTGTTGATATATTTATCTGTACAGTTTGTTGAACTCTGTCAAAGTATGTTGGGTCCAACTATCTTGGAATGTTGGAATAATTTTGAGTTATATAGGTACAAGTATGAGATACGTCTTCTGTCCCATTTTATATTGCTCCATTATTATTTGGAGAAGTCAAAAATGTTTTGCATTGTACGATTTTTAAATACAGTAATAGAAAATTGTGACTTGTAATGCTTTCTATGTAGTTCTTGATTATGTATAAATTCATTTTAAAAACTAAGGAATTGATGTTCGAATAGAGACCTAAAGTCAGATGACTACTCCTCATACTTCTGGTCCTATCATTCATTTTGGGATGAGAAAGTAACAAAATGAATTAATGAAGTTAGTCTAATACTCTAATACATAAAACTTGAAAGTCGGATGTTTTCCGGTATAGACTTGTAAGTTGGATAGCTGGACTCCCATTTAAGTTACCATAAAGCCAGAAATTGATAACTAGATAGATAACAACAACATACACAATTTAAGTGGGGTCTGGGAACGGCAATGAGTACACAGCCTACCATACCTTTGTGAAGGTAGAGAGGTTGTTCCCGATAGACCTTCGGCTCAAGAAAAGGAAATATGGTAGTGAAGAAGTCATGTAGAAATAATAAAGAAAATCTTTACGTAAATTGCAGAGAATTTCCTGACTCAACCAAAAAGCTAGAAAAAGATTTCCTGATAAGAACATAGTAGTACACACCTTTGAATTGAGAAAAAAAGAAAAGGAGGCAGTAGCAACAAGAACAGAGCATCATTATAGTTTTATATTATACTCCCATAATACCTAATTAAATATTAACATTTCTCTGTTTGGTATATCCCAAAATAAGTATTCACTTTCTTAAAAAACAGATATCTATTCAAATATTATATGCGGAAGAAATTATGCACGGGGTACTTTTACACTTTTTGATAAACTTTTTTCCCTTGTAAACAATCTAAAAGTAGTGGCAAGGAACTTAATACTTACTCTTAGTGATAGTCAAAGCAAAACATTGATTTGAAGCAGATGGTTTAATAGGACAATCTCTCCTTCTTTTTCTATAATGATGCCATGGTGTTCGGATCTGCATGCACCTAGACTATTCTACTGGATACTTCTCATCTCCTAAGTCCCACCAACCTAGTTGCTCAGACTCTTCACTTTTGATGCCGCACCCATGTCGACAAGACGTGGGTGTAAGTGTGGGATACGTGTCCGATTTGGTCAACCGATTATGGGTACTTTGACCAAAATCGACGGGAAAAGTCTGGATAGTTTTTATGATTTCTGTAGTCAATACAGAAGCTAAGGTGAAATTGAAGAAAATGGAATACCTTCTATATAGAATTTTTTTTTTATGACAAGGGAAACTGCACCCGTATCCATTCATGGATACTTATCCCCGAATCTTAAAAATTAGATCATGAAGGATCCGACTTCCAAATCCGCACCCCTATCGGACACCCCCACCCGAGTCAGAGCAACTTAGCATCACCAACATAGGGACTAGGTAACTTTGCCCATCAAGGTTTTGTTGATATGAAATCTTTGTTCAAGAATATGGAAATCATGGGAAAACATAAGGAAGATAGGTGGACCATTCATTTCGGTAGGATGGAAATTAATCAACTGTACGATGCTTGATCTTCCAGTGATGGTTTCATCTCACTGCATAGAATATAGAAAGTTTTTCAATGTGGAGTGATTTCTTTATTGGAATGAAATCGTCACAGTGTCAAAAAAGCATTCAGGTTTACAGATAAGGCCTCTAGAACCATTTCACTCACCGCTCAAGTAATTCTCCACAAACACTATACAATATCTTGAACTTTAAGAATATTTAGCAGTGCCTGCATCGTTGTATGTAAAGTGGATTACAGTGCCAAATAAACTATCAAAAGGAAGCATTTGAATTACTAGAGCCTAGAGGGAAATAAAAAAGGGAACTCTTATCTGCTTAGTAATGAAGATGAATTAAAGGAGATATCCCAGTGTACTATTTTAGTTTGGTCATTGTATTTTCAGTGTATGTTCATGATTTTTTTGTAAACATTCATTTCTAGTCGAAAATTTCTGTAATAATAAAACTATATCCCCGCCATCCCCTATGCATCCTCCCTCCCTAATGACAAAAAGAAGATGAAATTGATTCGAAATGATGTGTTTGACATTTTCTTTCTCGAAGTCATGCAAATGTGTTATCCATCTTTTCTCTAAAAACTTCCTTACTAATTGTTACCTCTCAACGAGGTTGCTATGTATATGCTGAATCTGATAATGTCATTCGCTAATTTGTGTTAGGGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTA</genome_strand>
        <mrna_strand>ATCAAGAG..........................................................................................GTAATGCCACCCAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGCAACCTTCGACGTGATGACCGTGATAATAGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGGATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTGTAAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCATGGATTGTGCGTCAGAGTGTTGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCAACTATATCCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGACATTGGTTCTTCCACTGTGGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACACCCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTATTGTACCAAAATTGGAGCCTGATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231152" ref_strand="+" ref_description="SGN-E231152 [cLED-5-M15]">
      <seq>agaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttggaaattgatgttgatattggttcttccactgtcgcgaatggagttttggggcttgtgattggtgtaattacgagcctagtagttgacatggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="57571" stop="54506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57271" g_stop="57209" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="351" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55083" g_stop="54988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="447" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54987" i_stop="54898" i_length="90">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54897" g_stop="54806" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="539" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E231152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57271" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
          <exon e_start="55083" e_stop="54988"/>
          <exon e_start="54897" e_stop="54806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAAGTATAGACTTCTGTCCCTTTTCTTTGAGTTATTTAACAAATAGACACAATGTTGTCTCGGATTTGATCATGTGTTGTTTATATTCTGTAGATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTT</genome_strand>
        <mrna_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA..........................................................................................ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236480" ref_strand="+" ref_description="SGN-E236480 [cLED-13-H10]">
      <seq>agaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaatttttaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtctgtgccaaagggctcatggattgtgcgtcagagtgtcggaagtactccttgtttactggggaaggcagttgactgcacctatatccgcggtcccaagtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="57571" stop="54691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57271" g_stop="57209" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="210" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="351" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55083" g_stop="54991" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="444" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E236480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57271" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
          <exon e_start="55083" e_stop="54991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAGGTACCTTTGTTTCTATCAACTTTTTAAATGACTTCCGGTAGTAGAATGTTTATTGATGACACTTCTGATACTATGACGAATACAACCATAGAGATGCTTTTAATTACTTATGATTTTATATGATTCTAGGACAAACTTGTTGGTTTTAATTTAAACTCATCTCTTCACAAAAAAATTGTTCTGGATGGGCTGAGATAGATAATTGCTCTCAGGTTCATGCAATTATTATGGGTAGTGGATGACAACGGAGCAGTATAAGTGAGAACTTCACTTTTTGAGATTGAATAAGTGAGATAACTGAACTATTACATTGGAACTTTAACCAATTGCTGAAGATTAAAGATGTCACCAATACAGAATTTTCTTGAGAAATCAGGGACAATATCTTGGAATGAAATGTATAAGACTCCTTTTTCAAGAAGATTTTCTCGGTTGAGATTGTTTTGCACTTTTATTCGTCAGAAAATTTTATTGGTTCTCTGGATTGAAAATTTCTGTTTCTATTCCCTGGTTTGAAGTTGCCAGTGTTTGGTCAATCTCTGCATGGAAAGTAGTTTGATGTCATAACAAGTTTCCTTTTACGACATGCATGTGATCATTAAATGCATATTAAACAGATGCGCATGCTGAAACTTGTGGGCTATCTTTGAGAGATTTTGCTGTGTTCTCCACTTCCTTCTATATTTTTATTACAATGTATATGTGCTTCGAATTGAAAACTGTCATGTACATGAAGGGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTG</genome_strand>
        <mrna_strand>AGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436781" ref_strand="+" ref_description="SGN-E436781 [cSTA-1-G21]">
      <seq>ggcgggacttcgtgaatacttttctcaaactgatgaaaggactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttccaagaggaatcaaaaactccaggagactcctcatcaccgtactcgttcattggaccaaatacgggctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacccagccctgaacgtgaagtgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgtgataatagtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacggatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaattgtaaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttacatctggttctcttttgcacggtttgttgaggggatgacgagttcccgtatagtagaatgaactcatcccgtctgtgcaaagggatctggatagtgcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58124" stop="55514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="235" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="275" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="0.95"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="430" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="532" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="577" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="0.96"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="713" r_length="136" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E436781" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG</genome_strand>
        <mrna_strand>GACTTCGTGAATACTTTTCTCAAACTGATGAAAGGACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCCAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCACCGTACTCGTTCATTGGACCAAATACGGGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCCAGCCCTGAACGTGAAGTGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGTGATAATAGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGGATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTGTAAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTT-ACATCTGGTTCTCTTTTGC-ACGGTTTGTTGA-GGGGATGACGAGTTCCCGTATAGTAGAATGAA-CTCATCCCGTCTGTG-CAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445580" ref_strand="+" ref_description="SGN-E445580 [cSTA-4-G21]">
      <seq>ggcgggacttcgtgaatacttttctcaaactgatgaaaggactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttccaagaggaatcaaaaactccaggagactcctcatcaccgtactcgttcattggaccaaatacgggctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacccagccctgaacgtgaagtgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgtgataatagtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacggatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaattgtaaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttacatctggttctcttttgcacggtttgttgaggggatgacgagttcccgtatagtagaatgaactcatcccgtctgtgcaaagggatctggatagtgcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58124" stop="55514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="235" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="275" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="0.95"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="430" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="532" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="577" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="0.96"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55960" g_stop="55820" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="713" r_length="136" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E445580" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG</genome_strand>
        <mrna_strand>GACTTCGTGAATACTTTTCTCAAACTGATGAAAGGACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCCAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCACCGTACTCGTTCATTGGACCAAATACGGGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCCAGCCCTGAACGTGAAGTGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGTGATAATAGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGGATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTGTAAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTT-ACATCTGGTTCTCTTTTGC-ACGGTTTGTTGA-GGGGATGACGAGTTCCCGTATAGTAGAATGAA-CTCATCCCGTCTGTG-CAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409495" ref_strand="+" ref_description="SGN-E409495 [PPI-14-A12]">
      <seq>cgtactcgttcattggaccaaatacgggctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacccagccctgaacgtgaagtgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgtgataatagtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacggatggaccatgttgctagacgtcctggttgtgcagcacaagttgcttcagaaaaaggactgttttctttaattgtaaatgtgcaagttcctggatcaacacactacagcatggttttctattttgtcatgaaagagttaacatctggttctcttttgcaacggtttgttgatggggatgacgagttccgtaatagtagaatgaagctcatcccgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="57993" stop="55529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57693" g_stop="57592" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="142" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="0.95"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="297" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57111" g_stop="57010" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="399" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.865" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56094" g_stop="56050" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="444" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89">
            <donor d_prob="0.787" d_score="0.96"/>
            <acceptor a_prob="0.083" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55960" g_stop="55829" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="576" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E409495" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57693" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57010"/>
          <exon e_start="56094" e_stop="56050"/>
          <exon e_start="55960" e_stop="55829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAAGTAAGTAATACATTAGCTTAGTTTCAGGAGATGACTACCCATTTAGGGTATTTCGTGTTGATAATTGAATGTTAACCAGCAATCGAAAACATCACATTGCAGTCAAGATGTTTTCTTCATTTTCATTTGGTTCCAATAGAAAATGTTAAAAGGAAGAAAAGATGTCATAGTCACACACACCGTTAATCAAAATTTTCTATGAAGGTTATACATAGAAATAAGAGACGCACTGAAAGAATGGGAAATGAATAATGTCTTCGCTTTTGCATAACTGTGTTTTTTCTATGGAGAACACTTACACTAAGTATAACTATTTATATACATTGCTACTTAACTACTATATACACATTACTACTTTACTATCGAAAACTCTCTCTCAAGCCGGTGCATACAAGTCATCGTACTGTGCTTGTTATATAGGTGACTAAAGTGGTGACAAGTGACAGATTTCGTGAAGTTCAACGAGCCCCTTTGTATTCTTCCAACTCACTTTAATAAATTAGAAGTATTAGGCTTACATCTTTTCATCAATTTTGTTTCACTCTTAAGCAATAGCTTTTGTACAGATTTATTACACTGAGCATTATAATACTAGTGAACTTTAAAAATCAGAAGTCCATTTTGCCATAGGCTAGTGTTCAAGTCCCAGAGATGGACTGTTAATTTTCACTGGTAATTGGCTTATGTTGGAGTAGGGCTCTCCAGAAGACCTGTATGTTTTTTTAGGTTATGGTTTCTTTACCAAGGACAGAAAAGTCACATTCCTAATAGCACTGTGGTCCTGCTTAAGTCTCCAATTATGTGCTTTAATTTTGTGCATGCTTTCACTTTTAGCTGTAGAACTTAAGCTTACCCTATTTGTAGTCAAGACATCAAGTACCATAATTTAATTTGTTTTGGTGCATTTATTTCCAGGTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAAGTAAGTCATTCCGCAGCTACTTTCTGTTTTGAGTTAAACTTGCAAGTGCTTGGGAAAGAAATAAGTGAATAACATTTGTCTTCTGAAAGGTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCT</genome_strand>
        <mrna_strand>CGTACTCGTTCATTGGACCAAATACGGGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCCAGCCCTGAACGTGAAGTGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGTGATAATAGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGGATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTGTAAATGTGCAA.........................................................................................GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550786" ref_strand="+" ref_description="SGN-E550786 [TUS-50-K7]">
      <seq>atcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaagatacaaaacgaatggaccatgttgctagacgtcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58934" stop="56722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58634" g_stop="58553" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="312" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="352" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="507" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57111" g_stop="57022" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="596" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E550786" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58634" e_stop="58553"/>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</genome_strand>
        <mrna_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTT-AAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688471" ref_strand="+" ref_description="SGN-E688471 [t3_tus_50_k07]">
      <seq>atcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaagatacaaaacgaatggaccatgttgctagacgtcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58934" stop="56722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58634" g_stop="58553" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="312" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="352" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="507" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57111" g_stop="57022" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="596" r_length="89" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E688471" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58634" e_stop="58553"/>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</genome_strand>
        <mrna_strand>ATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTT-AAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591574" ref_strand="+" ref_description="SGN-E591574 [45289]">
      <seq>ttgatggattcaatatttccccactcaaacctcttaatgggaggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttaaacagtgtggcaggacttcgtgaatacttttctcaaactgatgaaaggactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttccaagaggaatcaaaaactccaggagactcctcatcaccgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacccagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggcaaccttcgacgtgatgaccgtgataatagtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacggatggaccatgttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="59007" stop="56733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58708" g_stop="58553" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="386" r_length="230" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="426" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.558" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="581" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57111" g_stop="57033" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="660" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E591574" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58708" e_stop="58553"/>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTA</genome_strand>
        <mrna_strand>TTGATGGATTCAATATTTCCCCACTCAAACCTCTTAATGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTAAACAGTGTGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGGACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCCAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCACCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCCAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGCAACCTTCGACGTGATGACCGTGATAATAGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGGATGGACCATGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329282" ref_strand="+" ref_description="SGN-E329282 [cTOD-2-E15]">
      <seq>caacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaagatacaaaacgaatggaccatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58949" stop="56735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58649" g_stop="58553" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="327" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="367" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="522" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57111" g_stop="57035" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="599" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E329282" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58649" e_stop="58553"/>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGC</genome_strand>
        <mrna_strand>CAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273486" ref_strand="+" ref_description="SGN-E273486 [cLEN-3-F10]">
      <seq>aggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaacttttgctatgataaatcaaagattcctgctggtaaacctctgatggatcttgttgctgctgactggtttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58967" stop="56761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58667" g_stop="58553" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="345" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="385" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="540" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57111" g_stop="57061" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="591" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E273486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58667" e_stop="58553"/>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAA</genome_strand>
        <mrna_strand>AGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213236" ref_strand="+" ref_description="SGN-E213236 [cLEC-72-H6]">
      <seq>gaattgtggtccactacctggatatgttcgagctcatattgagagtggtggattcaatatttccccactcaaacctattaacgggaggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcagatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccagttatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaacctttggatcaaattgatttttccatcttttcgggtaaccttcgacgtgatgaccgcgataatggtcgtaactgctggagaatatctgatggaaataacttcagagttcgtagcaagaaactttgctatgataaatcaaagattcctgctgggtaacctctgatgggatctgntgctgctgactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="59193" stop="56902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58893" g_stop="58850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58849" i_stop="58709" i_length="141">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58708" g_stop="58553" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="200" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57821" g_stop="57592" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="430" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="470" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57363" g_stop="57209" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="625" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97">
            <donor d_prob="0.703" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57111" g_stop="57066" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="671" r_length="46" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E213236" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58893" e_stop="58850"/>
          <exon e_start="58708" e_stop="58553"/>
          <exon e_start="57821" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57209"/>
          <exon e_start="57111" e_stop="57066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGAGTAACCTCTATTTCCTTCCACTCATTTAGTTAGATGCTCTGAATACATATGAAAACCATAATTGATGATTCTCTATATATCTTTGGCAGAAGTACTCTGACGGTTTTATCTTAGATACTAACCAATTCTCACCACTCACAGGTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAGGTGTGCTTTAGTTGTACCTCATTTCCTTGATAATCTCTTCGGTTCTTAGATAATCTATGTCACCATGATCTAAAATCACTTTGGAAAATGCTTGTAGATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGT</genome_strand>
        <mrna_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA.............................................................................................................................................GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAAACTTTGCTATGATAAATCAAAG.................................................................................................ATTCCTGCTGGGTAACCTCTGATGGGATCTGNTGCTGCTGACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209275" ref_strand="+" ref_description="SGN-E209275 [cLEC-53-O14]">
      <seq>tccgcttcaggctcttctaagaggaatcataaactccaggagactcctcatcatcgtactcgttcattggatcaaatacgagctgcaaatagaaatgcttcaatgatggatgagtactctgatgaggaggaagatttccaaggggctgatcaagaggtaatgccacctagccctgaacgtgaaatgaagagaactgcactcgaagaagaaccttcggatcaaatagattttcccatcttttggggggaccttcgacgtgatgaccgccataatggtcgaaactgctggagaatatctgatggaaataacttcagagttcggtgcacgaactttggctatgataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="58047" stop="56913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57747" g_stop="57592" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57501" g_stop="57462" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="196" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.558" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57363" g_stop="57213" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="347" r_length="151" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E209275" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57747" e_stop="57592"/>
          <exon e_start="57501" e_stop="57462"/>
          <exon e_start="57363" e_stop="57213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAGGTGAGGACTTTATGCATATTCATAGTACTTTCAGCATCTCCTTCATAAATACGTTCTGACTGCTGAGAATGTGATTTGGAATTTTTGCAGGTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTGGTATGTGCTGTCCATTATGTATCATGTTCGTAGTATTCACTAAATATTTGTGTTGTCTGCACAAGTTCTTTACTGACATTAGTTTTGTACTTGTGAAGCACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATC</genome_strand>
        <mrna_strand>TCCGCTTCAGGCTCTTCTAAGAGGAATCATAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG..........................................................................................GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG..................................................................................................CACTCGAAGAAGAACCTTCGGATCAAATAGATTTTCCCATCTTTTGGGGGGACCTTCGACGTGATGACCGCCATAATGGTCGAAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGGTGCACGAACTTTGGCTATGATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208601" ref_strand="+" ref_description="SGN-E208601 [cLEC-39-A15]">
      <seq>gaattgtggtccactacctggatatgttcgagctcatattgagagtggtggattcaatatttccccactcaaacctattaacgggaggcccagaacacaagtgcaacatcttatgcagatcgatttaaaaggatggggtgtgggctatgtctcgtcatttcagcaacattgtctgttgcaaatgttgaacagtgtggctggacttcgtgaatacttttctcaaactgatgaaagaactgctgctccaagaatcccaattatggttaatatgacatccgcttcagtctcttctaagaggaatcaaaaactccaggagactcctcatcatcgtactcgttcattggatcaaattcgagctgcaaatagaaatgcttcaatgatggatgagtactctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="59193" stop="57324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58893" g_stop="58850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58849" i_stop="58709" i_length="141">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.721" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58708" g_stop="58553" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="200" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731">
            <donor d_prob="0.751" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57821" g_stop="57624" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="398" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E208601" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58893" e_stop="58850"/>
          <exon e_start="58708" e_stop="58553"/>
          <exon e_start="57821" e_stop="57624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGAGTAACCTCTATTTCCTTCCACTCATTTAGTTAGATGCTCTGAATACATATGAAAACCATAATTGATGATTCTCTATATATCTTTGGCAGAAGTACTCTGACGGTTTTATCTTAGATACTAACCAATTCTCACCACTCACAGGTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTGGTTAGCTTTTCTTATGCTCTGCTGAAGTCACATAGTTGAGAAACTTCAAGTTTGTTGTGACAAACTTTTTCATTTGCATTAAATTTGCTAATGCATCATCTGTTTAAGATATAAACTGTTTGGCATTGGAGAGTCGCTAGTGCTTTTAAGCGATTTCAGGAAGCTTCAGCCTTCCTCTTCCACCTCTTCACTTAGTGTTGCATGTAAGATAGTTGAATTGACAGTTGTTTGGTCAACAGAGGCGAGAAGGCAAAAGTAACTAAGTTAATGATTCTTTTCCCTTTGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGTTCTTTTTCTTTTGATCAAATAAATGTAAGTACAACCAATAGGAATGGTCAAACAGAAGCAACAAATTTTATGGGTTGTGTGCGTGGAAAAGGTTAATGAAAGGGGTTTGGGAGACTTGCATAAATAAATTGATTTCTTATAAATGGAACCCAGACACATCTTTGTCTGGATATTTGTTGTGGGGGATTAACATTAAAGCCATGTTCCTTTTTATATAGGTTGTTGGATAGAACTGTTAGAAACTTAAAGTTGTACATTCAGTAAAAATTTCGGCATCATCTTGGTTCTATTATAGAATTGATTTGATTTATTTAAAAAAAATGGAAAAGAAACTGTACTTTCTTGACTGATATTTTTATGAAAGCTTAATGTGTAACTTACTTTTAAATTGTCCTCCTTCAGGACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATG</genome_strand>
        <mrna_strand>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA.............................................................................................................................................GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAAATGTTGAACAGTGTGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAATTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATTCGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584692" ref_strand="+" ref_description="SGN-E584692 [10519]">
      <seq>ggcagatcctatattcacatgcggtattttgttctcgagatgcgattgttggcttactacaagagaaagcctcaggataatgtggttccaatcaagactcttcccatagatggtaattgtcgggtggaggaccgaggcctgaagactcatcatggacatatggtttatgtcttatcaggtttacaacaagaaagacaagtataaccgtgtcacgatggcagctttcaacattcaggaggcacttttctggaaagaaaacattgaatcaatcattgatcagcatcaggcagtctcaagggaactcaatggccattcagtacaattcgtcttgaggtatacaatctgatatggacaatgggaggaatgcttcctcatcagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="65880" stop="61501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65580" g_stop="65497" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65496" i_stop="64787" i_length="710">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64786" g_stop="64712" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="159" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64711" i_stop="62837" i_length="1875">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62836" g_stop="62783" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="214" r_length="55" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62782" i_stop="62080" i_length="703">
            <donor d_prob="0.935" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62079" g_stop="62014" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="280" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62013" i_stop="61897" i_length="117">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.373" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61896" g_stop="61801" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="383" r_length="103" r_score="0.823"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E584692" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65580" e_stop="65497"/>
          <exon e_start="64786" e_stop="64712"/>
          <exon e_start="62836" e_stop="62783"/>
          <exon e_start="62079" e_stop="62014"/>
          <exon e_start="61896" e_stop="61801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGATCCTATATTCATATGCGGTATTTTGTTCTGGAGACGCGATTGTTGGCTTACTACAAGAGAAAGCCTCAGGATAATGTGGTTAGTTTCATGAATTTGAATAATTTGTTTGAAGTTTTAAGGCTATTATTAGTAACATTATAATTTGCTGGTCTTATGTTCACTAGGAAGAGTAGTATTATTGCTCTTTTTGTTTCAATTTAAAATTAAGCTAGATTAAATTTTATGGTGTTAAACTAAATATGTTTGTAATGTATCACAAATCAACATGCCTTTGGATCTTGTGATCACATGCTATGTAGAAAGTCAGAGTTAGATAGTTATAAAATGTATAAAGAGGCATACTTTTTAAAACAAACCGAAAAGGGAAGTAGAACTTTGAATTTGAAACGGATGGAGTATACCTTTTCTTATTGAGATTTGAATGTCACTAGCAAATTTAGAGAACTTCAAACTACTGAATATCGGATAAAAGGAGTCCAAATGGAATGAAATGTAAAGTGAGAATTCATATTATTCGGTTCGGAACTAGGTTGGAATTGAGCCTTGTGACTTTGAGCTCAATGTACTTGACCTTTTGATTTGATAGACAGATAGAGAATAATTTCTTGATTGAAGTCTTACATAAATGATGCATTTTCAGGATACCATCTTTGCTTAGTGTAGGATGTTGAAATGTGAGTCGAGGAATTTCAATTGGATAGCTGTTTATAATAGTGCAGGTTCAGTGGAGAAACTTGTAGTCTCTTAAATCCCTAATAATTGATTTATGATGTTGCTGTGATTATAAGGTTCCAATCAAGACACTTCCCATCGATGGTAATTGTCGGGTGGAGGACCGAGGCCTGAAGACTCATCATGGACACGTGAGTTGTTCTTTACCGTTGTTGTTTGCTTTCTGACAAGTATACATGGAGTAATAAATTTATTTGAGAGAACCTGATCGATTTAATGGAACATCAAACTCTTTTTCTAGCATTAAGTGTCAATTTATCGTTGTTCATCTAGCATTTGCTTGTATGGACTTCTTATACAACAAACAACAACATACCCTGGTGTAATCTCACAAGTGGTGTCTAGGTAGGGTAATGTGTATGCAGCCTTACCTTTACCTTGAGGAGGTACAGAGGCTGGACTTCTAATATGCATGAAAAATTAGGTATTAAGAAAATGTGAGCATGGTTGTAATAATTTGATTTGTTTATTCATGATATCTGGTTTTGCGTTATATATTGAGGGGATAGTCCAGTTAAGAATGTATGACAAATGTTTTAGGTAAATAGAACCTTTCTTACTGTTTGATTTTTGCCTTAAATAACAAGAGCTGTGTTTGCTAGTGAAGCACAAAATATTGTTACTAAATCTAAAAGTGGCACAATAGGCTTAAAATGTGTAATTCTAGTATTCTTTAAGCCATCAATGGTTGAATTGCATTGTTGGCTGACCTGGATGCGTAATGCTAGTATTGTTTAATCCATCAATGGTTAAATTGAGTTGTGGTTTGACCTAAATGTCTCAAGTACTTAATTGTACTGTTACTTGTTATGGTCAAATTTAGAGTGATTTTTAGATTTGAAAAATCTTGGATTAAAAGGTTTTTATGATGGATAAGGGCCTAGAGATGCTTGAACCAGTGTGGGCCAAAAAAGATGAGAAACATGCTGCGTTAGAGCTGGGAAATCGATGATAGTTCTCGAAAGGGAGGGGGAGTTGACGGGGGAGATGTTGTAGGAGTCCCTCTTACATCCAAGTGATACAAATAAAAAACAATAGAATTCTTCTGATTAGAAAAAAGTAGCTTAAATTTCTTGAACTTAAAACATTTGAAATGTCACTCACTTATAGATTCCATGACTTAATCCTACCCTATAAGAATTCCACAAAGCCCACTCTCTTACATATCATTCAATTGATTCAGATTACCGAAATAATAGGCATACTGAATTGTGAGATGGGGTATGCACCATCTTGCATTTGCTTCATACTGTTAGAATTTTTTGAAGTTATTTCTCAAATTATGAAAGGTCAAAAATCATATTCGGGCTCCATCTTTGTGAGGTAAATTAATCTTCACTGTCAACTTTTAGTTGTAGGGATTCACCCCTACCTGTTTGGGTATTTCAGTATACAATAACTGAGGTGGTTTGTATGGGCAAAGTCTAGGTTATTCTTTATATTATTAATCTGCCTCATGTGGAATTCTTTTAGTATTCCGTCATGTGTAATTCCATCACTAAAGCGTCCCAATCCGATGTGTATTTTGCATTTCAAATTGTTAACCTACCTCAGTATATAAATTTTTAATATCAATTTTCGCTTTCCATTATATATGGCATAACAAAAAGAAAAAGCTTTTTTGGGAAAAGAAGAATGGGAAAAGAAGAAAACGAAGGGCATGTACATCTACAGAAGCAGTGAGCTTGATCAAATTTAGTGAAACATATTGAAAATTGACATGATGAACATTTCAACCAAAATCTTAACTAGGTCCCAAGTTAAAAGAAGGGCTGTTACATCTTTACTTTAATGTTTATTTGTGCATTATTTGCTTTATTATAAAAGTGAATCCATTTTCTTGAATTCTGAAGTATTTGTGCCTACAACAATTTATTGCAGTTGAATTCTGAAATTTTGAAAGATGTCCTACAATAACTTTTTGACGCGTGTCGTGATATAAGCTTGATGAATAGTCATACTTAACATTTCTGTTTGAGGATGTTAATCTTATGTATATCTTTCAGATGGTTTATGTCTTATCA-GTTTACAACAAGAAAGACAAGTATAACCGTGTCACGGTGCGTGATCTTCTCTATCCACTCTGTTCTTGCTCCAAACAGTTTACTTCACCATCTCAAATGTGTATGCAAGTTTTCAAATGCATATTTCATTCTTGTCGTATTACATCTCAACTTAATCTAATTCTTGAATTTCTTTAGCCCCTTCTCATAGTTATTGTTGTTGTTGTTCTCCTGATAGTTATGTCACATCAGTCCAACCTTTGCTGATAAAATTAATGCAGATGGATACTGAGGGCTCTTTTCTAATGTTGTTAATGGAACTTTTCAGGACTATCTCACGTATATTGGGGATATTACATTTTCCCATTCAATTATGCATACAAAGTTCAATTTGCAATGCAAACAATATACTGTTAGATTAAATAGCTGTCAGTGATCAGATTCGAAAGCCATAACTAAGCATACTTGACCTTTATTTGACTGTTATTAGGGTCAAACACTGCCTTCTGAATTGGTAACTGTATTAATAAAAACACCTAGAAGGTGCAAGAAAAGTGTTTACAGAAAAAAAGCAAAACTATGTCCTTCTCTTCTTAGAGAGATCCTATCTCTAAATCTCTAATTCATTTTGATTTTCTGAATAGAACTTCTTTTTATCTTCAAAGCACCCCATATTTTGTTCCCTCCAAATAGACAGCCAAATATATGAAGGTCTAGATGTGGAAGAAACTTATTCATATTAATCATTATCTTGTTCCAGATGGCAGCTTTCAACATTCAGGAGGCACTTATTTGGAAAGAAAAAATTGAATCAATCATTGATCAGGTTGTTTTCTCTTGTGTATTAAAGCTTCTCTTTGATATTTCCTCCTCAGATATATAGTTCTTCCACCTCTTCTTGTCTAGATATACTTGAAGGTAGTAATATTTCTTCAGTTTGCAGCATCAGG-AGTCTCAA-GGAACT-AATGG-CAATAAGTACAATTCGT-TTGA-GTATA-AATCTGATATGGACAATGGAAGGAATGCTTCCTCATCAGATCAT</genome_strand>
        <mrna_strand>GGCAGATCCTATATTCACATGCGGTATTTTGTTCTCGAGATGCGATTGTTGGCTTACTACAAGAGAAAGCCTCAGGATAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATCAAGACTCTTCCCATAGATGGTAATTGTCGGGTGGAGGACCGAGGCCTGAAGACTCATCATGGACAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTTATGTCTTATCAGGTTTACAACAAGAAAGACAAGTATAACCGTGTCACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCAGCTTTCAACATTCAGGAGGCACTTTTCTGGAAAGAAAACATTGAATCAATCATTGATCAG.....................................................................................................................CATCAGGCAGTCTCAAGGGAACTCAATGGCCATTCAGTACAATTCGTCTTGAGGTATACAATCTGATATGGACAATGGGAGGAATGCTTCCTCATCAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395062" ref_strand="+" ref_description="SGN-E395062 [TUS-35-F13](-)">
      <seq>ccactccaagatttcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattgtgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68262" stop="67478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67962" g_stop="67779" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="185" polyA_stop="199"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E395062" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>184</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67962" e_stop="67779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</genome_strand>
        <mrna_strand>CCACTCCAAGATTTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395057" ref_strand="+" ref_description="SGN-E395057 [TUS-35-F5](-)">
      <seq>cttattaatcatcttctttcagtttttgcttttaacttatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattgtgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68228" stop="67478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67928" g_stop="67779" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="151" polyA_stop="165"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E395057" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>150</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67928" e_stop="67779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</genome_strand>
        <mrna_strand>CTTATTAATCATCTTCTTTCAGTTTTTGCTTTTAACTTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396381" ref_strand="+" ref_description="SGN-E396381 [TUS-35-H11](-)">
      <seq>ccaacaatgaccgcaggccccaagtatgagtataggtgggctgagggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatttcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattggcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="69978" stop="67478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69678" g_stop="69656" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="157" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="321" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67995" g_stop="67783" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="534" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="552"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E396381" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69678" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</genome_strand>
        <mrna_strand>CCAACAATGACCGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGAGGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATTTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396380" ref_strand="+" ref_description="SGN-E396380 [TUS-35-H9](-)">
      <seq>tatatgcacatatttatcattcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgtttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaatatcattattgatattggcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="68774" stop="67478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68474" g_stop="68374" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67995" g_stop="67783" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="314" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="332"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E396380" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68474" e_stop="68374"/>
          <exon e_start="67995" e_stop="67783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</genome_strand>
        <mrna_strand>TATATGCACATATTTATCATTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGTTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262170" ref_strand="+" ref_description="SGN-E262170 [cLEG-58-B22]">
      <seq>atttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatngaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaantgagtatggtggtgataaaaatgtatttttaccattctataataagtatggtagtctaaaagtttgacattttaatatcattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73887" stop="67488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73587" g_stop="73554" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682">
            <donor d_prob="0.421" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71823" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="83" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="192" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="286" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="420" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="584" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67995" g_stop="67788" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="797" r_length="213" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E262170" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73587" e_stop="73554"/>
          <exon e_start="71871" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAG-GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACT-AATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAA-TGAGTATGGT-GTGATAAAAATGTATTTTTACCATTCTATAATAAGTAT-GTAGTCTAAAAGTTTGACATTTTAATATCATTATTG</genome_strand>
        <mrna_strand>ATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................NGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAANTGAGTATGGTGGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGGTAGTCTAAAAGTTTGACATTTTAATATCATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714657" ref_strand="+" ref_description="SGN-E714657 [FB12AC09]">
      <seq>ggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagtttgacattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="71208" stop="67497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70908" g_stop="70877" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="126" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="260" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="424" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67995" g_stop="67800" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="620" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="630"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E714657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70908" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTA</genome_strand>
        <mrna_strand>GGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719634" ref_strand="+" ref_description="SGN-E719634 [FC08BG02]">
      <seq>aaaaatcattttttaaaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcaaaaaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaaaacagcacattgattctactttaggcagcgaaaacttgaaagaggctgtaaggcttcctcctggggaaaatattaatgaatggctagctgtcaacactgtaaatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccaaaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaaaaagcctattgaagtttctgctccaaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaaaacaatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcaaaaaatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgtgccttactaatcatcttctttcagtttttgcttttaacctatttttaataggaaattaatgagtatggtgtgataaaaatgtatttttaccattctataataagtatgtagtctaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73925" stop="67511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73625" g_stop="73554" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71823" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="121" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="230" r_length="109" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="324" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="458" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="622" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67995" g_stop="67811" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="807" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E719634" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73625" e_stop="73554"/>
          <exon e_start="71871" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGT</genome_strand>
        <mrna_strand>AAAAATCATTTTTTAAAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAAAAAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAAACAGCACATTGATTCTACTTTAGGCAGCGAAAACTTGAAAGAGGCTGTAAGGCTTCCTCCTGGGGAAAATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAAATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAAAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAAAAGCCTATTGAAGTTTCTGCTCCAAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAAACAATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAAAAAATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275457" ref_strand="+" ref_description="SGN-E275457 [cLEN-10-L2]">
      <seq>atcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaattcgggttgattgacaaaaaggagctagctccactccaagatctcatagattctattattgggccttactaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72169" stop="67616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71869" g_stop="71823" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="156" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="250" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="384" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="548" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67995" g_stop="67916" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="628" r_length="80" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E275457" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71869" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATC</genome_strand>
        <mrna_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTCGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGGGCCTTACTAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398389" ref_strand="+" ref_description="SGN-E398389 [TUS-35-H9]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72170" stop="67672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71870" g_stop="71823" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67995" g_stop="67972" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="573" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E398389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71870" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAAG</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395058" ref_strand="+" ref_description="SGN-E395058 [TUS-35-F7]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72170" stop="67673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71870" g_stop="71823" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67995" g_stop="67973" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="572" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E395058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71870" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395070" ref_strand="+" ref_description="SGN-E395070 [TUS-35-H11]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatttgggttgattgacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72170" stop="67673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71870" g_stop="71823" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67995" g_stop="67973" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="572" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E395070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71870" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395063" ref_strand="+" ref_description="SGN-E395063 [TUS-35-F13]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccctgaatttgggttgattgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72170" stop="67674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71870" g_stop="71823" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67995" g_stop="67974" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="571" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E395063" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71870" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
          <exon e_start="67995" e_stop="67974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCATGTAAGTCGTCTAAATCGTTGATCCTGAATGAACTTCCTTCATTGTTTGTGCATGTTACTGGATTTTCTTTCTTCCCAAGTCTTAGACATGGTCATTGCATATGTCTACGAGTCTATCGTGTAAATTTGGGGGTAGCGGAAAGGGGAAATGGTAGATGTCACAAGGTAGGAAATCCGAAATCCGAAACCCTTCACCAACAAGGTAAAAGTTCAGGTAGCCACCAACTAACTGAGCTACTAAGATTCCCCGTTGCTTTGAAAATATTGGTTATGTCAATAACTTCATTATGCACCATTATTTGTTCATATGGTTTTCATTGATCCTTAATCTATAGAATTTATGATGTTAATTCTTATAATATAATGTTTTATTTTGCAGGAATTTGGGTTGATTGACAAAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCCT..........................................................................................................................................................................................................................................................................................................................................................................................GAATTTGGGTTGATTGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275635" ref_strand="+" ref_description="SGN-E275635 [cLEN-18-G21]">
      <seq>gaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaagaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73926" stop="68068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73626" g_stop="73554" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71823" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="122" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="325" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="459" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="623" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E275635" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73626" e_stop="73554"/>
          <exon e_start="71871" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</genome_strand>
        <mrna_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAAGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398387" ref_strand="+" ref_description="SGN-E398387 [TUS-35-F5]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72170" stop="68068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71870" g_stop="71823" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="549" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E398387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71870" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275458" ref_strand="+" ref_description="SGN-E275458 [cLEN-10-L4]">
      <seq>atcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaagatcgtgagtcttaaggaggaagcacatttgaatacgtgcttcaagcatttcattctcttcacccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72169" stop="68073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71869" g_stop="71823" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="156" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="250" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="384" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68374" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="548" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E275458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71869" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</genome_strand>
        <mrna_strand>ATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394145" ref_strand="+" ref_description="SGN-E394145 [TUS-42-A9]">
      <seq>cgaaaaatcattttttacaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttccgaaaatcgtgagtcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73927" stop="68126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73627" g_stop="73554" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71823" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="123" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="232" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="326" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="460" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68537" g_stop="68426" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="572" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E394145" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73627" e_stop="73554"/>
          <exon e_start="71871" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAA</genome_strand>
        <mrna_strand>CGAAAAATCATTTTTTACAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCCGAAAATCGTGAGTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395061" ref_strand="+" ref_description="SGN-E395061 [TUS-35-F11]">
      <seq>aatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactgcccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactcaattggatgatgaatctttatttcctcaaaggcttggtgcaccttttccacctaacttcaaggatgttgtcaagacgatattcaaacgtctctttcgtgtatatgcacatatctatcactcccattttcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="72170" stop="68141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71870" g_stop="71823" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="157" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="251" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69048" g_stop="68915" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="385" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68537" g_stop="68441" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="482" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E395061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71870" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68915"/>
          <exon e_start="68537" e_stop="68441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTGGTAAGTACTAATTACACAGCTTCCAGACTCATGTTTTAATGTCATATTGGAGATGTAAACCATACTCCTCTCTGTCCCAACTCATATGACATACTTTTTCATTTCGGAATGTCGAAATTGTTTTGGATTCTTCTAAGTCCTCAGTATTCTAGTTACGATCTTAAGTTTGAAAATGTCCTGTTTCTTTCAGCAATTTGATTTGGACTATCTCGAGTGAAGTGAAAACTTACCTCTTGAGAGCCAAGACGGTGGGTGTGTAAGAGTAGGTGGCGTTGAGTTGGATGGGGAATTCTAGCTAACTAAAATCAACTGCTTTCGTTGTTAAGACAATACTATGTTACCTATTTCTCATTGTCAACTGGACTATGTTTTTGTAGGTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAA</genome_strand>
        <mrna_strand>AATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338274" ref_strand="+" ref_description="SGN-E338274 [cTOE-13-I24]">
      <seq>gaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcatggagtaagggtgcacaattaagacagcacattgattctactttatgcagcggaaacttgagagaggctgtaaggcttcctcctgaggaagatattaatgaatggctagctgtcaacactgtagatttcttcaaccaggtgaatctgctttatggcaccctcactgagttctgtacaccagaaaactggccaacaatgactgcaggccccaagtatgagtataggtgggctgatggtgtacaaatcaagaagcctattgaagtttctgctccgaaatatgttgaatatttgatggactggattgaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73926" stop="68651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73626" g_stop="73554" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71823" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="122" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69749" g_stop="69656" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="325" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69048" g_stop="68951" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E338274" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73626" e_stop="73554"/>
          <exon e_start="71871" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
          <exon e_start="69749" e_stop="69656"/>
          <exon e_start="69048" e_stop="68951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACAGTACGTACATCCCCTCTCTCCCTTTTTCCTCTTGTTTACTCATACATAATGATGGGCATCCATTGGCACATTAATATTACCTCTATTTCTGCTGTTGATATGATTGAATGTGATTGCCCGACTCGGCATCTTAATTGAATTGCAGAGTAAAACTTCCGCTCACTCTTGGTTTCCGAACTCTCGACTTCTGGAACCAGAACTTCAGTCTATCCTCCCCTTTTCTCTTCGGGCTATAAGGAAGTAGGAAAAAAAGAACAGAGACCATCTACTTTATTTCTTTGAGTTGTCCTAAAACTGTGTTCATTTTTTGGAAATGATGTTTTTGCTTGCTATATATTGTTATACCTTTAAGTTACCGATTCAATAAAAATATGTATTCTTATACCTTTTCAGTACACAAATCCTAAAGAGGTGTCATGTAACCTACTTTTGTACTAGTAAAACTTCACATTCACCAAAACATTAATTCTATCTCTATTGTAGACCTAATTTTAATGTAGATACTATAAAAACATGATTAAACTTTGGTTCATTCTCAAACAAAAGAAGTGTGATTGAACGCTGGTCTTAATCTTAAAGCAATGCTTAGGGCCTATTGAAGGACTGTGTAGATCCTATCTGAGTATCATGAATGAAGTCCTTAGTAATGCTTATCCGTTCCAAGACCACTTCTTTGATACCAAGTAATTGCAGGTCCCCTGAAACCACTTCCCTCCATGTATTCTAGGTCTTCCTCATCCCCTTTGAAATCCTTCACTTACCATAGTTTCACACCTACGGACCGGTGCATCTATAAGTTGACGTAAAACATGTCCAAACCATATCAAGCAACCTTTTTGCCTTTTCTCCTAAATTTGTGCTACTTGGATCTTCCGGCGAATGTGATCATTTCTAATCTTATTCAATCTGGTATGACCACACATCCATCTTAACATTCAATATTTTCACTAATTACCAATATTTGCTGGTGGAATGTACCATATTCAGCATGTGTAGCTATGATGATGCTTATTATGTGACTCACCGTTTGAAGCCAATGCTGGATATTTTACATTCTGTTTGCTTACTTGTTGCTGTAAGCTGATCAAGTTTAATTTAATGGTGGTTGTTTATTCTTTACTATGCAGCTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAAGTATGTTTGTAAATAAGCTGTTTCAAGGTTAATTCTATTATATACATTCACTTAAGTTGTCCTAGGTTATGGGAGTTGATTCTTGCAAATCGCTTAAGGACCATTTTCGAATTCTACTGTCCAACAGTGGAATTTGTGTGTCTTTCAATCACAGGGATATGGAAAAACGCTGCGGTTTTCTTTGTTCCATATTACCTGCCGATAGTCACAAGTTATAAGGGGTGCTTGATTCTTTCCTAAGCTATAATTAGAAATTAATCTGAACAGTCTTCTTACGTGACATGACATTAAGTCATTTGGTCTAGGATTTCATAGACATGTAATACTCTGCCCAGAACATCGTAACTTGAACAGTTTGAGAACTTCATGAACATTGCTGTAGCGCGTTCCAAGTGTGCAGCAATCTTGAGAAAGATGTCTTGATGGAGTTTTGACCAAAATAATTAGAAGTGACAATATGTTTCCTTCATTTTGCGATTTAACTCCGAAAAGACCCAAGTATATATGAGAAAGCGTTAACACTAGGATTAGACTAGGTGGAAATTTAATCCGGAGTATTCTTCAACGGGCAACACCATTCTTAGCTTCTTCATATATTGTGTTTCAGGTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTC</genome_strand>
        <mrna_strand>GAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCATGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTATGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGAGGAAGATATTAATGAATGGCTAGCTGTCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGGCCAACAATGACTGCAGGCCCCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393838" ref_strand="+" ref_description="SGN-E393838 [TUS-41-B9]">
      <seq>cgaaaaatcattttttagaaatccatttttcatatatataatttttttaaaatgagtctatttggtcttggaaggaatcagagaacattccgtcccaaaaagagtgcaccctcagggagtaagggtgcacaattaagacagcacattgattctactttaggcagcggaaacttgagagaggctgtaaggcttcctcctggggaagatattaatgaatggctagctgtcagcactgtatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="73927" stop="70575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73627" g_stop="73554" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682">
            <donor d_prob="0.421" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71871" g_stop="71823" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="123" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70985" g_stop="70877" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="232" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E393838" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>232</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73627" e_stop="73554"/>
          <exon e_start="71871" e_stop="71823"/>
          <exon e_start="70985" e_stop="70877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAGGTAAAATTAATCACTTTTTTTTTTAATTTTTGGTATGATTTTGAATTGATGCATGATATGTAGAATATTTTTGTTTCTAAATATATGATTTTTTGTTGTTGTTGTTGTTGTTTCATTGATGTTTTATTGGTTGTAGAATTTTAGGTTTGTTTTATTTTCTCCTTTGAATGAGTTTTTAGAAGATTTTAATTTCATTCACTATATTTGGATGTGCATTATATGAGATTGAAATTTGTTAGGAGTTCAGTTTTTTAGGTTTACAACTTTTACATGTGGGATTGGGGATACTTTACATGTATATATTTAGAGGCGGATTCAGGATTTGAGGTTTATGTATTCGTATAAATTATTGCTCAAGTTAATAGATAAATAACTTTGTTTTGCGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGATCTGGTTAACAACAATATATCTAGTGTAATCCCACAAAAGTGAGGTCTGAGGAGGGTAAAGTGTATGCAGAGCTACTACCTTGGAGGTAGAGAGAGACTGTTCTGTTTCTGATAGATCCTTAGCTCATAGAAATACAATCGACGTAGTACTATAGAGAAAGGTATATGAAAATGGAGAAAGTCTGGGCAAAACACTATAGAAAACTGATTGAATCATCCTAAACAATAGTTTGTGACTGTGAAACCAGTTACTATAGGGATCGTTTGGTTCGTGGACTAAGTTATCCTGCAGACTAATTTAATAACACCAACTTTGATGGGGTAAGGTGGGATATCTAAGATTAAGTTTGTGATTAAACTTATACTTTGTTTGGTTGAAGGTCCTGGGATATCCACTTTTATCCATGAACTAAATAACCCCTTAGTGGTCCATGTTTGATAGTAGTCTTTTATCAAACTCATAAGCTAGCTCCGCCGCTGATGTATATTACCATTATACTGTTAGTTTCACTTGTTTTGGGCAAGAAATCTAGTACATTTAGGTATTACTATTTCAAGATCAAATATTTGATCTGGTGTTGTATTCAGTGAATAGTCGCCAGCCCTTTTTTTTTTTTGATTGGAGATGAACTTGTCAAAACAGAAGGATAGCTTGCATATATTTGTCTACTGTACAGATTGTTTGTACTTTGTAGAATGATCAAACTTTACCACATAGTTTTTATTTGACGAGATCAAATGGGAGGTTGGATGTTCTGTTGTGTATAAGAAGAGAGAATAATGCTTCATAACTTATCTCCTTTTCTGATCCATAGAAAGTTTCACATGTCACAGAAAACATGACCAAAGTCTTCTCTATCTCTTTATCTCTATGTGTCCTCACGGTTTTGTTTTAATGCCCGACTTGGCTTTGTTTTAACGTCCAACGTACTCGAAAATTGTAATCATGGTCTGAATATAAAAGGGTAACACATTCTCTTAGCAAGTTTGCGCTTCTAAGGCTTTAGCTCAATGAAGATAATGATATTTCTGCTATTCGTATCTCACATATAAATTATATCTTTTAACAGGTGACTATCACATTAATTCTCTAGTTTAGTAGTTCCATTTAACCTTCTTGTAGAATATTGCATACTTCGCATTATGTTTCTTGTCATTATTTTAGCTTCATTTTAAAAGTGTGTTTTGCTATCCTATTTGGCGTTTTGGGACATAAGCATTATTCATCTGATGTCTTACTTCTTATTGGTTTATAGGAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAGGTTATGCTCTTTCCTAGTTTAAAGGAATTATTGCTGTTTTCTCGTCTTGGTTTTTTGGTAGTTACTTTTTGTATGTTAAGTGTTTGGCTGCACGTGCTGATGTTGATACCACCAATTTCTAGAACTTGTTCAAACAAAAGACATATTCAAGAAATCAAGTTTAAAAGGACACTAGATTTTTCGTAATTTCTCAAGGCATGCTTCAGTTTCTACTTGATTATTTTTCTTGTGCTAATTATAAGCTTTTAAGTAGTTGAATTTTGAAACGAATAAAAACTATGTTTTTAGTTGCATAATTGTATGCTTGTTGTTATGATTTTATCGGACATGGTATACCCTACACTAAACCTCAGGGTCATTGGTGACTTTTCACATCCGCACCTTTGGTGACTGATCTCAAATTCATTGTAGGAGATGGAGTGCCTTTTTTCACTGGACTATCCTTCCCTTGTTATGCATGCTATCTGTTCAATAGTTTTGTGGTTTAGTTGACTTGTTTTCTAATTTGTAAGTATTATTATGACAACAAGTTTGCATCTATGACACGAAAATTGTCAGGAGCTTTTAGAAGTTTATCCAACTTCAAATTTTGGCATGTTAAAGTTGGTATAGTTGGCTAGTTCTAAATCTATAGTATCTCATCCTAAGAGTTTAGATCCTTGATGGTGAAAATTTTCATTTTCCTTAGTCTTCTTGCTTGTTATTCATTCTTCCCTTATGTCTTTATTTTAATTTGCAAGTTGATCTAAACCATTGAATTATGAGTAGAGAAGTGTAATTTTTTTTGTCCTGAACGGGTCAACTTTCTTGCTTTGCTCATCGTTTTCTTTGTTGCAGGGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA</genome_strand>
        <mrna_strand>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315898" ref_strand="+" ref_description="SGN-E315898 [cTOA-26-M8]">
      <seq>atgtcccaatgcttccttttagcttaatctctcaattaactcatccaaatttgtactaaatcaacctcaaaaatctccatttttaagctaatggaggtactaatcaaacttaatcaacccccttaatgataattatccaaaaccctagatctgtccccttattaggtaactccaacaacttttgctctctatatctcatacactgaaagtctgaaacacctttatattaactccagtggtgataataatttctgggtacagctttttttggtgaattgtgaagtgggtatttggggatttttgttttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatggggagaaagttgatcctgagccaggaaggtgtagaaggacagatgggaagaaagtggangtgcgcccaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcactactgggagcagcaaaacaagcggcaatttccaacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="75977" stop="78707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76277" g_stop="76783" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78407" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="769" r_length="262" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E315898" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76277" e_stop="76783"/>
          <exon e_start="78147" e_stop="78407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAG-AAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTA</genome_strand>
        <mrna_strand>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGGAGAAAGTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGGAAGAAAGTGGANGTGCGCCCAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313306" ref_strand="+" ref_description="SGN-E313306 [cTOA-13-K23]">
      <seq>cttttaacttaatctctcaattaactcatccaaatttgtactaaatcaacctcaaaaatctccatttttaagctaatggaagtactaatcaaacttaatcaacccccttaatgataattatccaaaaccctagatctgtccccttattaggtaactccaacaacttttgctctctatatctcatacactgaaagtctgaaacacctttatattaactccagtggtgataataatttctgggtacagctttttttggtgaattgtgaagtgggtatttggggatttttgttttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="75992" stop="78471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76292" g_stop="76783" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78171" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="517" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E313306" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76292" e_stop="76783"/>
          <exon e_start="78147" e_stop="78171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAA</genome_strand>
        <mrna_strand>CTTTTAACTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAAGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475043" ref_strand="+" ref_description="SGN-E475043 [cSTB-39-G1]">
      <seq>gtctgaaacacctttatattaactccagttgtgataataatttctgggtacagcttttttcggtgaattgtgaagtgggtatttggggatttttgttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccattcacggcggtgcagtggcaggaattggagcatcaagcaatgatatataagtatttggtggcgggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttctgcgaggttctttcatcatcctagcttgggttattgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcagcaaaacaagtggaaacttccaacgtagcagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="76185" stop="78714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76485" g_stop="76783" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78365" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="516" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E475043" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76485" e_stop="76783"/>
          <exon e_start="78147" e_stop="78365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGA</genome_strand>
        <mrna_strand>GTCTGAAACACCTTTATATTAACTCCAGTTGTGATAATAATTTCTGGGTACAGCTTTTTTCGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTG--TTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCATTCACGGCGGTGCAGTGGCAGGAATTGGAGCATCAAGCAATGATATATAAGTATTTGGTGGCGGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCTGCGAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTATTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470158" ref_strand="+" ref_description="SGN-E470158 [cSTB-17-M5]">
      <seq>gtgaagtgggtatttggggatttttgttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccattcacggcggtgcagtggcaggaattggagcatcaagcaatgatatataagtatttggtggcgggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttctgcgaggttctttcatcatcctagcttgggttattgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcagcaaaacaagtggaaacttccaacgtagcagtagtggcaatttccaacgtagcagcagtggaagcttccagaacacgccactatattctgctgctaatactgaaggaccaagttatggaagtgccacaacaaagatgcagatggagcctgccacctatgcagtanatagcaaggggtatgggtatttccatggaatgactgctgatgctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="76254" stop="79809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76554" g_stop="76783" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78537" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="631" r_length="403" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78538" i_stop="79477" i_length="940">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.653" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79478" g_stop="79509" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="663" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E470158" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76554" e_stop="76783"/>
          <exon e_start="78147" e_stop="78537"/>
          <exon e_start="79478" e_stop="79509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCA-C--TAC---TGGGAGC-AGCAA---AACA--AGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATTCTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGCCTCCCACCTATGCAATAGATAGCAAGGGGTATGGGTAAATCTTCTTTTTCTCTATGTTTCCTCTTATCCTGAGATGCATTTTCTCTGATGGTCATTTTTAATTACTTGTTACCTTAGAAGAAATCTGAATTAGTTAGCATTTTACAAGTTAAGAGGATCTTCCTGCATTGAATTTGGTCTTTGGCTGCACAAGTGATGTTCAATACTAGTTGGTTACATGTGAAAATGCTTGTTTTAATAATCTATGTTTTCTATTGCCAATTAAAGATAAAAATGTTACACTAAAATCTTTTACATTTGGAAGGATTCGAAATAGGATATGTTGGACTATCATCCACCTTTTCCCCCTCCGTTGAGCTTAATTTCCAAGTGGTAAACAGAACTTGGCGTTCTAACTCTGCATTATGTTTCAGATACACGGTGATCTTTTATTTTTAACTATAGTGATCTAGTATGTGATATTTCTGTTTAGGTGATTATGACCCGAGTCTTCCACCTAAAGTATTCTGCATGGTAGAATTGGTTATGCTACTACAAGGAGTCATTTATACTTCTTTGTTTTATTTTTCTGCCTCTTTTTGACATGCCTGATTATTTGGAGTTTGTTGTGCAGTCTTAACGAAGTAGTAAGAAGATAGTTGAGAAAACAAACTTTTATCATTTAAGATTCGACCTTTCAGACCTTATCTCAGATAAGGAAAAAAAACATTGTTTGGTCTGTAAATATTGTGGTGTATAGTGTTTGGTACATAGGTAGGTCCATCGGTCTCATGTCATACTATTATTGAGTGCAATGCTGCAGTTGCATCTGTCTAATACGCCCTCCTGTCTTCCGAGAAATAAGTGGTGTAACTTGGAACTAGACTACATGACTTACAAAATAAGAATTCGGTAAAACATATTAAGTTATTGAGATAGCAAATTGGGCTACACTTGTGTAACATCCAGTTTCATGAAATGCAAATTGGCAACAGGTATTTCCATGGAATGACTGCTGATGCTGATG</genome_strand>
        <mrna_strand>GTGAAGTGGGTATTTGGGGATTTTTG--TTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCATTCACGGCGGTGCAGTGGCAGGAATTGGAGCATCAAGCAATGATATATAAGTATTTGGTGGCGGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCTGCGAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTATTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCAGCAAAACAAGTGGAAACTTCCAACGTAGCAGTAGTGGCAATTTCCAACGTAGCAGCAGTGGAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATACTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGCCTGCCACCTATGCAGTANATAGCAAGGGGTATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCCATGGAATGACTGCTGATGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470129" ref_strand="+" ref_description="SGN-E470129 [cSTB-17-G7]">
      <seq>gtgaagtgggtatttggggatttttgttcttttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccattcacggcggtgcagtggcaggaattggagcatcaagcaatgatatataagtatttggtggcgggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttctgcgaggttctttcatcatcctagcttgggttattgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcagcaaaacaagtggaaacttccaacgtagcagtagtggcaatttccaacgtagcagcagtggaagcttccagaacacgccactatattctgctgctaatactgaaggaccaagttatggaagtgccacaacaaagatgcagatggagcctgccacctatgcagtagatagcaaggggtatgggtatttccatggaatgactgctgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="76254" stop="79806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76554" g_stop="76783" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78537" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="631" r_length="403" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78538" i_stop="79477" i_length="940">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.653" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79478" g_stop="79506" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="660" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E470129" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76554" e_stop="76783"/>
          <exon e_start="78147" e_stop="78537"/>
          <exon e_start="79478" e_stop="79506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCA-C--TAC---TGGGAGC-AGCAA---AACA--AGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATTCTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGCCTCCCACCTATGCAATAGATAGCAAGGGGTATGGGTAAATCTTCTTTTTCTCTATGTTTCCTCTTATCCTGAGATGCATTTTCTCTGATGGTCATTTTTAATTACTTGTTACCTTAGAAGAAATCTGAATTAGTTAGCATTTTACAAGTTAAGAGGATCTTCCTGCATTGAATTTGGTCTTTGGCTGCACAAGTGATGTTCAATACTAGTTGGTTACATGTGAAAATGCTTGTTTTAATAATCTATGTTTTCTATTGCCAATTAAAGATAAAAATGTTACACTAAAATCTTTTACATTTGGAAGGATTCGAAATAGGATATGTTGGACTATCATCCACCTTTTCCCCCTCCGTTGAGCTTAATTTCCAAGTGGTAAACAGAACTTGGCGTTCTAACTCTGCATTATGTTTCAGATACACGGTGATCTTTTATTTTTAACTATAGTGATCTAGTATGTGATATTTCTGTTTAGGTGATTATGACCCGAGTCTTCCACCTAAAGTATTCTGCATGGTAGAATTGGTTATGCTACTACAAGGAGTCATTTATACTTCTTTGTTTTATTTTTCTGCCTCTTTTTGACATGCCTGATTATTTGGAGTTTGTTGTGCAGTCTTAACGAAGTAGTAAGAAGATAGTTGAGAAAACAAACTTTTATCATTTAAGATTCGACCTTTCAGACCTTATCTCAGATAAGGAAAAAAAACATTGTTTGGTCTGTAAATATTGTGGTGTATAGTGTTTGGTACATAGGTAGGTCCATCGGTCTCATGTCATACTATTATTGAGTGCAATGCTGCAGTTGCATCTGTCTAATACGCCCTCCTGTCTTCCGAGAAATAAGTGGTGTAACTTGGAACTAGACTACATGACTTACAAAATAAGAATTCGGTAAAACATATTAAGTTATTGAGATAGCAAATTGGGCTACACTTGTGTAACATCCAGTTTCATGAAATGCAAATTGGCAACAGGTATTTCCATGGAATGACTGCTGATGCTG</genome_strand>
        <mrna_strand>GTGAAGTGGGTATTTGGGGATTTTTG--TTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCATTCACGGCGGTGCAGTGGCAGGAATTGGAGCATCAAGCAATGATATATAAGTATTTGGTGGCGGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCTGCGAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTATTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCAGCAAAACAAGTGGAAACTTCCAACGTAGCAGTAGTGGCAATTTCCAACGTAGCAGCAGTGGAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATACTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGCCTGCCACCTATGCAGTAGATAGCAAGGGGTATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCCATGGAATGACTGCTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449589" ref_strand="+" ref_description="SGN-E449589 [cSTS-6-N24]">
      <seq>tgggtatttggggatttttgttcctttttaggtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggcggtgcagtggcaggaattggagcatcaagcaatgatatataagtatttggtggcgggtattcctgtgccggcggaccttgttgtacctatacgacgtagctttgaacccatttctgcgaggttctttcatcatcctagcttgggttattgctcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcagcaaaacaagtggaaacttccaacgtagcagtagtggcaatttccagcgtagcagcagtgaaagcttccagaacacgccactatattctgctgctaatactgaaggaccaagttatggaagtgccacaacaaagatgcagatggagtctgccacctatgcagtagatagcaaggggtttttccatggaatgactgctgatgctgatgagcagaatttctctctcgaagcttcggcaggcacgagaaagttagggatgggatctaacacagacagcatgtggtgtctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="76260" stop="79892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76560" g_stop="76783" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78531" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="619" r_length="397" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78532" i_stop="79477" i_length="946">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.653" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79478" g_stop="79592" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="734" r_length="115" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E449589" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76560" e_stop="76783"/>
          <exon e_start="78147" e_stop="78531"/>
          <exon e_start="79478" e_stop="79592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCA-C--TAC---TGGGAGC-AGCAA---AACA--AGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATTCTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGCCTCCCACCTATGCAATAGATAGCAAGGGGTATGGGTAAATCTTCTTTTTCTCTATGTTTCCTCTTATCCTGAGATGCATTTTCTCTGATGGTCATTTTTAATTACTTGTTACCTTAGAAGAAATCTGAATTAGTTAGCATTTTACAAGTTAAGAGGATCTTCCTGCATTGAATTTGGTCTTTGGCTGCACAAGTGATGTTCAATACTAGTTGGTTACATGTGAAAATGCTTGTTTTAATAATCTATGTTTTCTATTGCCAATTAAAGATAAAAATGTTACACTAAAATCTTTTACATTTGGAAGGATTCGAAATAGGATATGTTGGACTATCATCCACCTTTTCCCCCTCCGTTGAGCTTAATTTCCAAGTGGTAAACAGAACTTGGCGTTCTAACTCTGCATTATGTTTCAGATACACGGTGATCTTTTATTTTTAACTATAGTGATCTAGTATGTGATATTTCTGTTTAGGTGATTATGACCCGAGTCTTCCACCTAAAGTATTCTGCATGGTAGAATTGGTTATGCTACTACAAGGAGTCATTTATACTTCTTTGTTTTATTTTTCTGCCTCTTTTTGACATGCCTGATTATTTGGAGTTTGTTGTGCAGTCTTAACGAAGTAGTAAGAAGATAGTTGAGAAAACAAACTTTTATCATTTAAGATTCGACCTTTCAGACCTTATCTCAGATAAGGAAAAAAAACATTGTTTGGTCTGTAAATATTGTGGTGTATAGTGTTTGGTACATAGGTAGGTCCATCGGTCTCATGTCATACTATTATTGAGTGCAATGCTGCAGTTGCATCTGTCTAATACGCCCTCCTGTCTTCCGAGAAATAAGTGGTGTAACTTGGAACTAGACTACATGACTTACAAAATAAGAATTCGGTAAAACATATTAAGTTATTGAGATAGCAAATTGGGCTACACTTGTGTAACATCCAGTTTCATGAAATGCAAATTGGCAACAGGTATTTCCATGGAATGACTGCTGATGCTGATGAGCAGAATTTCTCTCTCGAAGCTTCGGAAGGCACGAGAAGTTTAGGTATGGGTTCTAACACAGACAGCATGTGGTGTCTGATG</genome_strand>
        <mrna_strand>TGGGTATTTGGGGATTTTTG--TTCCTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCGGTGCAGTGGCAGGAATTGGAGCATCAAGCAATGATATATAAGTATTTGGTGGCGGGTATTCCTGTGCCGGCGGACCTTGTTGTACCTATACGACGTAGCTTTGAACCCATTTCTGCGAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTATTGCTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCAGCAAAACAAGTGGAAACTTCCAACGTAGCAGTAGTGGCAATTTCCAGCGTAGCAGCAGTGAAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATACTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGTCTGCCACCTATGCAGTAGATAGCAAGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTCCATGGAATGACTGCTGATGCTGATGAGCAGAATTTCTCTCTCGAAGCTTCGGCAGGCACGAGAAAGTTAGGGATGGGATCTAACACAGACAGCATGTGGTGTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276242" ref_strand="+" ref_description="SGN-E276242 [cLEN-21-P22]">
      <seq>tttcttttttatgtgggagatgagtatggcggcggagaatgggtacagaccgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="76281" stop="78670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76581" g_stop="76783" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78370" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="427" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E276242" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76581" e_stop="76783"/>
          <exon e_start="78147" e_stop="78370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACT</genome_strand>
        <mrna_strand>TTTCTTTTTTATGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267144" ref_strand="+" ref_description="SGN-E267144 [cLEI-4-L6]">
      <seq>cgccgttcacggctgtgcagtggcaggaattggagcatcaagctatgatatataagtatttggtggctggtattccggtgccggcggaccttgttgtgcctatacgacgtagctttgaacccatttcagcaaggttctttcatcatcctagcttggggtactgttcctattatgggaagaagtttgatcctgagccaggaaggtgtagaaggacagatggaaagaagtggaggtgcgccaaagatgcatatcctgactcaaagtattgcgagcggcacatgcatcgaggccgcaaccgttcaagaaagcatgtggaatctcaatcgactgcccagtccttgttgactagtatgtcacataatactactgggagcactactgggagcagcaaaacaagcggcaatttccaacgtaacagcagtgaaagcttccagaacacgccactatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="76331" stop="78744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76631" g_stop="76783" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78147" g_stop="78444" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="451" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E267144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76631" e_stop="76783"/>
          <exon e_start="78147" e_stop="78444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCTGTATGTATCTCTTTCTAGTTTCTTATGGTTGTCAATATTTTTTATTTGTTTTTCAGTAATTTTGGTATTGGTCAGCTTGCATGCAAAGATGGATTCAGATTTAAGCTTGTTGGGTTGTAATTTTTGAAGTTTTTTAGCATTTTATTCATTGTAATGTTAACATTATGTGTTAAAAATCTTATCTTTATCGAAAAATTTGTGTTTTTTTTTCACTAGATATCATCTTCTAGTCTTAAAAAGATACTGGGTTCCTTGTTCGCATCTGTTCAAATCTTGATAGACAGAGTTATCCGGTACTTGTGCTGGAAAGATTGGCGCAAGTTGGCTCGGACACCACGGTTATCCAAAAGAAAAATACTGTGTTTGGATAAACTAGATCTGCTTCTCACTAGAAAAAGCATATCTTATAATATAGTGTTCAGACCGATAGGAAGAAATCAGATGTTCTTTTTTATCATTGTAAACTGAAAACAATTCCTCTCTTCATTTTGTAAGTTAGCTTGTTTGTTTGTTATAGTTATATATTTCATTTAGCTTCTTTCAGTTAAGTAGTATGATGGAAATGTCTGCATTTCTGAAATGGAAGTTTAGTAAGGTTTGATAATGAATTTGGAGATTGTAGATGAAGTCATAAAGATAACTCTTTTGTCATTGTTTCCTTTTTGGCTCAATATTTTGTAAAGGCAGCATTGGGGAAGGCAAGATTTTTGCCAAAGGGTTCATTGTCTACTATATATACTTAAAAATAGTTGACTTTGTATATACAATGTGATTTTCTTGTGAAGCACTTCTTCCCCGCTAGCTCTGTGCCTGTAAGGCAGTTCAATCATTGGTAGCCATTCATTTTGTTTTCATCTCATTCCATTTCCTTGTATGAAGATTTGCTGATCCATTCATTTCAGCATATTTCTGTAATTAGTTATTGTAGGGGAAACATTTATTTCTTTTATTCGTTGGGTAGGACTGCAGGATAAGCCGATTTTGGGTTTAGTAGGTTGCTAATGTATTCTAAATATATGACTTGGTGGACTATACGTTTGCACGTCTTTATTGTACAATAATGTTAATAGGCGGCATATTAGTGCTTTTGTACTGGCTTATCTGGTGTCTGTTTTGGTTTTATGCCATAATTTACAAGTAATTTATATTTCAATGTCTGTGGAGCGGATAAATTTCACTATCTATTCTGGTTAAACTCCTATCTGCTGGAGTTCCAACTGCGGATAACTCAATCAAATGTAGTAAAGTGTTCTCTTTTCGTGCTATAGAGCACTTCCTTTTTAAGGAGTCTGAGGGAGGGGTGTTGCAGCCTTACTGCGTTTGCTAAATATGAAGCTTATTAGTTTGTATCTTGTGCTGTCAGTGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</genome_strand>
        <mrna_strand>CGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746769" ref_strand="+" ref_description="SGN-E746769 [GI|47104513]">
      <seq>actactatattaacaaaatttcaatttcaaataatttttccttcgagcttcgcgaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaacaaggcatcaatagcttatttcatccttgcaaaggttcaaaggattaagcaacatgttgaggagcacaatcccagaagggttaatatacattgcacacttcacagcattggccttagtttttttgccttcccacagatagtagggagcatataggtagaagaaaaaagagcatttacagttgcagttgttaacatgctttcatttcttttagtttggtaaacattgtttgaatgaaagtgagaatttgaattaatacggaaaagggtcaaaaatgtctctgaactatcgcgaaaggtcataatatacccttcgtctttgtccatctattatgctaataatacttttcggatttttagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88435" stop="2683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88135" g_stop="88053" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86540" g_stop="86294" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="330" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86136" g_stop="85864" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="603" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85863" i_stop="84915" i_length="949">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84914" g_stop="84576" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="942" r_length="339" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E746769" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88135" e_stop="88053"/>
          <exon e_start="86540" e_stop="86294"/>
          <exon e_start="86136" e_stop="85864"/>
          <exon e_start="84914" e_stop="84576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAGGTATGCTACAGAGTGCTCACAAATGGAAGTAGTACTGTATTACAGTTAAACCATGATTAGACTTTTCATGCTACTTTGTTCTGATTCTTTAAACAGTGTAATATCGGTGTCATCAAATGTGATTATTGACGGGGAAGGAACTTGATCTACCCTTGGTCAAAATGGTTATTGGTTCGGATTGGTGTGCAATTTGCAACTAAGATTGCTTTTTCATTTTACAATCATATCAACCACTTTTTTCCAACATTGACCATCTCCGACTGTTTTATGTTACTATGATTGAAGAAGTACTCACCAATTATATTCGTTTTTCATGGAGCACAAAGTCAATTCAAGACGACATTTTGGTGATAAAAGTGGGAAGAAGTAAAGAGTGTGTGTTGTGTGGGGGTAGATGGCGGATTAGATAGGACGAGAAACAGGACATAACTCCTACTTTCCTATGTATGAATCTTTTATGTCAAGTTTGTTACATTTATTAGGTGTAATCTGAAGCTAGATAATGATATCGATGTTTTTGTCAACGTTTTAGATTGAACATGAGCACTGTTTCCTTCATGACTTGTTCGGGGATCGTTACTGTTTCCTTCTGGTTCACTGAAACTGTGTTATGTATAGTCTTATCTTGAATCTGTGTTGAACTGTTAAATGTTGTTGAATAACAAAGCCGGTACTCTATCTGCAATCATTTGTTCCCTTTACTGATACTTCCACGCTAATATACAACGCGTTGTCATCTGTGTAGTCTATCGTGCTGTCATTTATAACTGTTCTACAACCATGACATTGCCAGTGTTGAGTACCTCATATGGATACTTGCACACACTCATATATCTGATATATACCATAAATGAATCCGCGTAACGTACATGTATTCAGTATCCACCTCTTACTGCAATTCAGAGAACACAAATAACTTCTCACGTTGTCGTGTATCGATTTCTTGCAGGTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGTACTGTGTGTATGTAA</genome_strand>
        <mrna_strand>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371382" ref_strand="+" ref_description="SGN-E371382 [TUS-27-M3](-)">
      <seq>tatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaacaaggcatcaatagcttatttcatccttgcaaaggttcaaaggattaagcaacatgttgaggagcacaatcccagaagggttaatatacattgcacacttcacagcattggccttagtttttttgccttcccacagatagtagggagcatataggtagaagaaaaaagagcatttacagttgcagttgttaacatgctttcatttcttttagtttggtaaacattgtttgaatgaaagtgagaatttgaattaatacggaaaagggtcaaaaatgtctctgaactatcgcgaaaggtcataatatacccttcgtctttgtccatctattatgctaataatacttttcggatttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86696" stop="84293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86396" g_stop="86294" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86136" g_stop="85864" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="376" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85863" i_stop="84915" i_length="949">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84914" g_stop="84593" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="698" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="709"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E371382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86396" e_stop="86294"/>
          <exon e_start="86136" e_stop="85864"/>
          <exon e_start="84914" e_stop="84593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAGGTATGCTACAGAGTGCTCACAAATGGAAGTAGTACTGTATTACAGTTAAACCATGATTAGACTTTTCATGCTACTTTGTTCTGATTCTTTAAACAGTGTAATATCGGTGTCATCAAATGTGATTATTGACGGGGAAGGAACTTGATCTACCCTTGGTCAAAATGGTTATTGGTTCGGATTGGTGTGCAATTTGCAACTAAGATTGCTTTTTCATTTTACAATCATATCAACCACTTTTTTCCAACATTGACCATCTCCGACTGTTTTATGTTACTATGATTGAAGAAGTACTCACCAATTATATTCGTTTTTCATGGAGCACAAAGTCAATTCAAGACGACATTTTGGTGATAAAAGTGGGAAGAAGTAAAGAGTGTGTGTTGTGTGGGGGTAGATGGCGGATTAGATAGGACGAGAAACAGGACATAACTCCTACTTTCCTATGTATGAATCTTTTATGTCAAGTTTGTTACATTTATTAGGTGTAATCTGAAGCTAGATAATGATATCGATGTTTTTGTCAACGTTTTAGATTGAACATGAGCACTGTTTCCTTCATGACTTGTTCGGGGATCGTTACTGTTTCCTTCTGGTTCACTGAAACTGTGTTATGTATAGTCTTATCTTGAATCTGTGTTGAACTGTTAAATGTTGTTGAATAACAAAGCCGGTACTCTATCTGCAATCATTTGTTCCCTTTACTGATACTTCCACGCTAATATACAACGCGTTGTCATCTGTGTAGTCTATCGTGCTGTCATTTATAACTGTTCTACAACCATGACATTGCCAGTGTTGAGTACCTCATATGGATACTTGCACACACTCATATATCTGATATATACCATAAATGAATCCGCGTAACGTACATGTATTCAGTATCCACCTCTTACTGCAATTCAGAGAACACAAATAACTTCTCACGTTGTCGTGTATCGATTTCTTGCAGGTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTA</genome_strand>
        <mrna_strand>TATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311314" ref_strand="+" ref_description="SGN-E311314 [cLEZ-18-G21]">
      <seq>gaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaagcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88382" stop="85598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88082" g_stop="88053" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86540" g_stop="86294" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="277" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86136" g_stop="85898" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="516" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E311314" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88082" e_stop="88053"/>
          <exon e_start="86540" e_stop="86294"/>
          <exon e_start="86136" e_stop="85898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAA</genome_strand>
        <mrna_strand>GAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAAGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271279" ref_strand="+" ref_description="SGN-E271279 [cLEM-5-H7]">
      <seq>atgattattaaagggtctgttcaggagaataccaaagaatggaatccagtgcatcctaccatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggcttccaagaaagagtgattcagtctttttcaagcataaggttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatggatcgtctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="86834" stop="85599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86534" g_stop="86294" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86136" g_stop="85899" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="483" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E271279" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86534" e_stop="86294"/>
          <exon e_start="86136" e_stop="85899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTA-TAAAGGGTCTGTTCAGGAG-ATACGAAAG-ATGGAATCCAGTGCATCCTA-CATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAA</genome_strand>
        <mrna_strand>ATGATTATTAAAGGGTCTGTTCAGGAGAATACCAAAGAATGGAATCCAGTGCATCCTACCATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371383" ref_strand="+" ref_description="SGN-E371383 [TUS-27-M3]">
      <seq>aacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatcaactgatattcgaagcatgagaaacattgtggaagagagtcggtgttacctcgattcaaatattgctggctttcaagaaagagtgattcagtctttttcaagcataaggtttcaaagaatcagtagggaaggcggtagattcgtctgaaatgccaatcaaaatgtcttttccggatcaatgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88381" stop="85608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88081" g_stop="88053" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86540" g_stop="86294" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="276" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86136" g_stop="85908" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="506" r_length="230" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E371383" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88081" e_stop="88053"/>
          <exon e_start="86540" e_stop="86294"/>
          <exon e_start="86136" e_stop="85908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGG-TTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGA</genome_strand>
        <mrna_strand>AACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTTCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471510" ref_strand="+" ref_description="SGN-E471510 [cSTB-24-C8]">
      <seq>attaacaacattccgatcaaatttcaatttcaaattatgtttcctccaagcttcgagaacattacactgagcagcaccctttcatggtagaaatgattataaagggcctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcattggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggttgtggtgttggattcagcgttggcttctctctactcggcgttggcattggtctacctgccaattacatctacacaggtccttacaatgcattcacagctgccagaagtggtgctattgagatgtctcgatccactgatatacaaagcatgagaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88424" stop="85766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88121" g_stop="88053" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="86" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86540" g_stop="86294" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="333" r_length="247" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86136" g_stop="86066" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="404" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E471510" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88121" e_stop="88053"/>
          <exon e_start="86540" e_stop="86294"/>
          <exon e_start="86136" e_stop="86066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATGGTAAAAATAACCAACTTTTCATATTCAGCTTCTTAATGAATTTGGACGTTACATTTCTGTTACTTTTCGTTTATATTTGATGATTATTGCCAACTTTCTGAGAGTCGAAACTACTGTTGAAGTTGATTTATTGATTTACCCGTATATCCTTTCGTAGCATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATT</genome_strand>
        <mrna_strand>CAAATTTCAATTTCAAATTATGTTTCCTCCAAGCTTCGAGAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAATGATTATAAAGGGCCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCATTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGTTGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTACTCGGCGTTGGCATTGGTCTACCTGCCAATTACATCTACACAGGTCCTTACAATG.............................................................................................................................................................CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCCACTGATATACAAAGCATGAGAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200784" ref_strand="+" ref_description="SGN-E200784 [cLEC-9-M18]">
      <seq>ctactatattaacaaaatttcaatttcaaataatttttccttcgagcttcgcgaacattacactgagcagcaccctttcatggtagagatgattataaagggtctgttcaggagatacgaaagatggaatccagtgcatcctacatatggagccttctggggcatgggaataggcgttggctgtggggtgggatggggtcctggatttggtcctgaggctattggttatgttggagctggatgtggtgttggattcagcgttggcttctctctgctcggcgttggcattggtctacctgccaattacatttacacaggtcccttacaatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88434" stop="85994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88134" g_stop="88053" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86540" g_stop="86294" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="330" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E200784" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88134" e_stop="88053"/>
          <exon e_start="86540" e_stop="86294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATGGTAGAAACTTAAATCTCTGTATTTTTTTTATTTTTTGTTTCATTTCTATGTGTTGATGCTTGTTTTCATATGATTTCATTATTTGTATAAAGGGTATTTTGTGCTATTTTGTTCTTGGATTTTTGGCTAATTTGTAAGTGCATAACTTGTGTGAATCAATTATATTGAAGTATCCATTTGGTTTCTTGTTGTTGTTGCTTACTTTGAAATTTCATTGTTTTAAAAAAAAGGGGGCTTTTTGGGCTATTTTGATCTTTTGGGTATTTTCTAGTTCCTTAAGAGCACAATTTTGTGTGATTTGTCCATTTCAATTCCAAGTGTTGTGTTTATTTTGAGGTTTCTTTGTATAAAAGAGGGCTATTTTGTTCTTGGGGTTTCTCTAAATTATTGTTTGTTTGGTTCTCCACACGGTATCTGGTACCCACATTAGAGCCCGATTATATCAGATTCGCTCCGGGAAGTCCCACATTGGGGTTAAAGCACTGCCTAACAAAGGCGACTCCGTACCCAAGGAGCTCGAACACGAGACCTCTTGGTTAAGATGGAGGAATACTTACCATGGGGGTTTCTCTAAATTTTAAGAGCATGACTTTGTGTGAATCAAGTATAGTGATTTATCCATTTCAATTCTAAAGTGTTGCTGCTTACTCTGAGATTTCATTGTTTACTCTGAGATTTCATTGTTTAAAAAGAAAGCTTTTTTACCCTCTTTTGTTCTTGGGGTTTTCTCAATTTCTCAAGTGCTTAACTTGTGTGAATGAAGTACAATATACTGAATTGTTCATTTCATTTCTAAGTGTTGCTGGTTACTTTGATGAGCTTTCATTGTTTAAAGTTTGCTAAATTTGCGCTGTTTTTGTTCTTGGGTTTTTTCTATTGTTTTTAAGAGGATAGCTTGTGTGAACCATGTATACTGAAATATTCCTTAGTGTTTCATTTGGTAAGGGAGTAGTTAGCAAAATCTTCTGGTTTGTGAACACAAATAGAACTAGGAATAAAGGGGTTAACTTTCTAGTTGAATTTTCAAGTTATTATAAAATAGCTCCTTTTTTTTCCACAACTTGATGGTTAACTGGGATGAGTGGGGAGAATTAGTACGAAAAGATAGAGAAGGAAAAAACTCATGATCCAACTTATGTGTCGTACTTGCCTTTTTGGCATGTTCAAAAAAGAAAGTCACGTTTATTTAGAAAAAAGAATCAACTTTGAACTTCTCATTGCACCCTTAATGTGATGATTTATAGTCACGTCTATGTCTTGTTATAGACCACAAGTTTTAGACAACTTTCTTGTGTCTTATCAAACACAACAACGTAAACTGGGATGGAGAGAGTAAGACACAGAACCCCTGTGGAAGTAAAATTTGCCTTCCAGACTAAACTGTTAGAAAACTTTGAGAGGACAACTTTCCAAAGGAGTTAAAATTTGCCCTCCGGACTTGGCATTTCCATTTTCGTTATCTTAGGGTATCTCTCAACAGAATTTGATAGACTTATGGGCTTGTGATTGTAGGTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGT-CCTTACAATG</genome_strand>
        <mrna_strand>CTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCCTTACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551047" ref_strand="+" ref_description="SGN-E551047 [TUS-54-P19]">
      <seq>caccaccaaccaattaaaacaatgtgaagagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaaaaattgtattatctcctttaaatccactaatatcaaaaaacaaacactttcaaattcccaaatccaaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaaaaaaattaccaaaaaatccaagaaaataccaaaacaagaaaatgaagatcaatacgacgatnacgatgataatgatgatgatgatgaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaaggggattttcagttggaattcctttgtttatgggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtacctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88442" stop="89567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88742" g_stop="89267" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E551047" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88742" e_stop="89267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</genome_strand>
        <mrna_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAAAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAAAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATNACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAAGGGGATTTTCAGTTGGAATTCCTTTGTTTATGGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688828" ref_strand="+" ref_description="SGN-E688828 [t3_tus_54_P19]">
      <seq>caccaccaaccaattaaaacaatgtgaagagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaaaaattgtattatctcctttaaatccactaatatcaaaaaacaaacactttcaaattcccaaatccaaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaaaaaaattaccaaaaaatccaagaaaataccaaaacaagaaaatgaagatcaatacgacgatnacgatgataatgatgatgatgatgaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaaggggattttcagttggaattcctttgtttatgggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtacctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88442" stop="89567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88742" g_stop="89267" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E688828" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88742" e_stop="89267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</genome_strand>
        <mrna_strand>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAAAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAAAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATNACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAAGGGGATTTTCAGTTGGAATTCCTTTGTTTATGGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258307" ref_strand="+" ref_description="SGN-E258307 [cLEG-49-O10]">
      <seq>accaccaaccaattaaaacaatgtgaaaagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaataaaaaaaaaataatggaaacatgttcatttccaagaattgtattatctcctttaaatccgctaatatcaaaaaacaaacactttcaaattcccaaatccgaacaatcacatataaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaacttcccctaagaaaattaccaaaaaatccaagaaaataccaacactagaaaatgaagatccatacgacgataacgatgattatgatgatgatgatgaaccagaaagatgacggataccagagatagcaactaatacaatgataagtagaatgggattttcagttggaattcccttggttattgggttattgcggtttcctttttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88443" stop="89467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88743" g_stop="89184" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E258307" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88743" e_stop="89184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTA</genome_strand>
        <mrna_strand>ACCACCAACCAATTAAAACAATGTGAAAAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCGCTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCGAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGAACTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAACACTAGAAAATGAAGATCCATACGACGATAACGATGATTATGATGATGATGATGAACCAGAAAGATGACGGATACCAGAGATAGCAACTAATACAATGATAAGTAGAATGGGATTTTCAGTTGGAATTCCCTTGGTTATTGGGTTATTGCGGTTTCCTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623960" ref_strand="+" ref_description="SGN-E623960 [89105]">
      <seq>caccaaccaaattaaaacaatgtgaagaagttgtaaagcaaatctagtgaagaagttcaaaaaaaaaataatggaaacatgttcatttccaagaatagtactatcccccttaaatccactaatctcaaaaaacaaacacttccaaattcccaaatccaaacaattacataaaaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaagaaaattaccaaaaaatccagaaaaataccaaaacaagaaaatgaagatcaagacgacgacaacgatgatgatgatgatgatgatgatgatgaagaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaatgggactttccgtaggtattcctttgttaattggtttattgttttttccttgtcttgattatcttaaggttggtttaaaaattgatgtgcctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttattgggagttagttatgggatagtttcatctagttgggatccaatgagagaagggtcaactttgggttggaatgaagctaagaagaattgggctgttttttggcaatcaattagcgggggtggatcaagaaaaaagtattaggagttgtggactttggttatgtatcttttaattatataataatgtgtttaactcttgatcttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88445" stop="89776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88745" g_stop="89476" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E623960" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88745" e_stop="89476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACC-AATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAAC---GATGAT-A--ATGATGATGATGAT---GAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAGAAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTTAAATCTTGATCTTGTTAT</genome_strand>
        <mrna_strand>CACCAACCAAATTAAAACAATGTG-A-AGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTC----------AAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATAGTACTATCCCCCTTAAATCCACTAATCTCAAAAAACAAACACTTCCAAATTCCCAAATCCAAACAATTACATAAAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAGAAAAATACCAAAACAAGAAAATGAAGATCAAGACGACGACAACGATGATGATGATGATGATGATGATGATGAAGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGACTTTCCGTAGGTATTCCTTTGTTAATTGGTTTATTGTTTTTTCCTTGTCTTGATTATCTTAAGGTTGGTTTAAAAATTGATGTGCCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGGCTGTTTTTTGGCAATCAATTAGCGGGGGTGGATCAAGAAAAAAGTATTAGGAG--TTGTGGACTTTGGTTATGTATCTTTTAATTATATAATAATGTGTTTAACTCTTGATCTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612649" ref_strand="+" ref_description="SGN-E612649 [62414]">
      <seq>tttaaaacaatgtgaagaagttgtaaagcaaatctagtgaagaagttcaacaaaaataatggaaacatgttcatttccaagaattgtactatcccccttaaatccactaatctcaaaaaacaaacacttccaaattcccaaatccaaacaattacataaaaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaagaaaattatcaaaaaatccaagaaaataccaaaacaagaaaatgaagatcaagacgacgataacgatgatgatgatgataatgatgatgaagaacaagaaagaggagttataccagaggtagtaactaatagaatgataagtagaatgggattttcagttggtattcctttgtttattggtttattgttttttccttttttttattatcttaaagttggtttaaaaattgatgtgcctacttgggtaccttttattgtgtcatttgtgtttttgggagtgccttattgggagttagttatgggatagtttcatctagttgggatccaatgagagaagggtcaactttgggttggaatgaagctaagaagaattggcctgttttttggcaatcaattagtgggggtggatcaagaaaaaagtattaggagttttggactttggttatgtattttgattaatataataatgtgtttaaatcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88455" stop="89766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88754" g_stop="89468" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E612649" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88754" e_stop="89468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGAT-A--ATG---ATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAGAAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTTAAATCTTGAT</genome_strand>
        <mrna_strand>TTTAAAACAATGTG-A-AGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTC--------A-ACA-AAA--ATAATGGAAACATGTTCATTTCCAAGAATTGTACTATCCCCCTTAAATCCACTAATCTCAAAAAACAAACACTTCCAAATTCCCAAATCCAAACAATTACATAAAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTATCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAAGACGACGATAACGATGATGATGATGATAATGATGATGAAGAACAAGAAAGAGGAGTTATACCAGAGGTAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAAGTTGGTTTAAAAATTGATGTGCCTACTTGGGTACCTTTTATTGTGTCATTTGTG-TTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGGGGTGGATCAAGAAAAAAGTATTAGGAG--TTTTGGACTTTGGTTATGTAT-TTTGATTAATATAATAATGTGTTTAAATCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617929" ref_strand="+" ref_description="SGN-E617929 [68601]">
      <seq>gcaaatctagtgaagaagttcaaaaaaaaaataatggaaacatgttcatttccaagaattgtactatcccccttaaatccactaatctcaaaaaacaaacacttccaaattcccaaatccaaacaattacataaaaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaagaaaattaccaaaaaatccaaaaaaataccaaaacaagaaaatgaagatcaagacgacgacaacgatgatgatgatgatgatgatgatgatgaagaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaatgggactttccgttggtattcctttgtttattggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtgcctacttgggtaccttttattgtgtcatttgtgttttttgggagtgccttattgggagttagttatgggatagtttcatctagttgggatccaatgagagaagggtcaactttgggttggaatgaagctaagaagaattggcctgttttttggcaatcaattagtgggggtggatcaagcaaaaaagtattaggagttgtggactttggttatgtatcttttattaatataataatgtgtttaaaatcttgatctgtattatataactcatgttatttggattgaaaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88506" stop="89783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88783" g_stop="89507" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E617929" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88783" e_stop="89507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAAC---GATGAT-A--ATGATGATGATGAT---GAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAG-AAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTT-AAATCTTGATCTTGTTATAAAATAAC-AATGTCATTTGGATTGTTTATTT</genome_strand>
        <mrna_strand>GCAAATCTAGTGAAGAAGTTC-----AAAA-AAAA----AATAATGGAAACATGTTCATTTCCAAGAATTGTACTATCCCCCTTAAATCCACTAATCTCAAAAAACAAACACTTCCAAATTCCCAAATCCAAACAATTACATAAAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAAAAAATACCAAAACAAGAAAATGAAGATCAAGACGACGACAACGATGATGATGATGATGATGATGATGATGAAGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGACTTTCCGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTGCCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGGGGTGGATCAAGCAAAAAAGTATTAGGAG--TTGTGGACTTTGGTTATGTATCTTTTATTAATATAATAATGTGTTTAAAATCTTGATC-TG-TATTATATAACTCATGTTATTTGGATTGAAAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576726" ref_strand="+" ref_description="SGN-E576726 [59989]">
      <seq>cttaaatccactaatctcaaaaaacaaacacttccaaattcccaaatccaaacaattacataaaaaaatcacacctctttttgcaacactcaattctccaaaaggttttggaccttcccctaagaaaattaccaaaaaatccaaaaaaataccaaaacaagaaaatgaagatcaagacgacgacaacgatgatgatgatgatgatgatgatgatgaagaacaagaaagaggagttataccagagatagtaactaatagaatgataagtagaatgggactttccgttggtattcctttgtttattggtttattgttttttccttttttttattatcttaaggttggtttaaaaattgatgtgcctacttgggtaccttttattgtgtcatttgtgtattttgggagtgccttattgggagttagttatgggatagtttcatctagttgggatccaatgagagaagggtcaactttgggttggaatgaagctaagaagaattggcctgttttttggcaatcaattagtgggggtggatcaagaaaaaagtattaggagttgtggactttggttatgtatcttttattaatataataatgtgtttaaatcttgatcttattatataatcatgttatttggattgcttatttaaaaaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="88565" stop="90013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88864" g_stop="89517" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E576726" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88864" e_stop="89517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAAC---GATGAT-A--ATGATGATGATGAT---GAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAGAAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTTAAATCTTGATCTTGTTATAAAATAACAATGTCATTTGGATTGTTTATTTGTGATTTAGG</genome_strand>
        <mrna_strand>CTTAAATCCACTAATCTCAAAAAACAAACACTTCCAAATTCCCAAATCCAAACAATTACATAAAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAAAAAATACCAAAACAAGAAAATGAAGATCAAGACGACGACAACGATGATGATGATGATGATGATGATGATGAAGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGACTTTCCGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTGCCTACTTGGGTACCTTTTATTGTGTCATTTGTGTATTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGGGGTGGATCAAGAAAAAAGTATTAGGAG--TTGTGGACTTTGGTTATGTATCTTTTATTAATATAATAATGTGTTTAAATCTTGATCTTATTATATAAT--C-ATGTTATTTGGATTGCTTATTTAAAAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719771" ref_strand="+" ref_description="SGN-E719771 [FC08DD01]">
      <seq>ggcttattttctacgcccataaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccccccaaaggggccccttttaatttttttaggggcccccaaaaaaggggggggaaaaagggggaaaaattttttccgggggaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105108" stop="2683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104809" g_stop="104651" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="290" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="520" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101690" i_stop="100736" i_length="955">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100735" g_stop="100727" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="529" r_length="9" r_score="0.778"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100726" i_stop="98533" i_length="2194">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98532" g_stop="98501" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="561" r_length="32" r_score="0.781"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98500" i_stop="97682" i_length="819">
            <donor d_prob="0.534" d_score="0.00"/>
            <acceptor a_prob="0.075" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="97681" g_stop="97651" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="591" r_length="30" r_score="0.548"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="97650" i_stop="96572" i_length="1079">
            <donor d_prob="0.506" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="96571" g_stop="96524" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="636" r_length="45" r_score="0.583"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="96523" i_stop="95239" i_length="1285">
            <donor d_prob="0.341" d_score="0.58"/>
            <acceptor a_prob="0.536" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="95238" g_stop="95209" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="664" r_length="28" r_score="0.567"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E719771" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104809" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
          <exon e_start="100735" e_stop="100727"/>
          <exon e_start="98532" e_stop="98501"/>
          <exon e_start="97681" e_stop="97651"/>
          <exon e_start="96571" e_stop="96524"/>
          <exon e_start="95238" e_stop="95209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAAGATCAAGATATGTCTCTGCCCCCCTTGGGGCATCCTCATCCCACAGGGGCGGAGCTAGAAGGTTATCGTAAGGGTACAACCGAATCCAGATCTACTATATGTATACAAAAACTTAGCTCCGAGCCACATTACATACACGTGATGTTGCTATTTTAGAATTTAGAATTTCATAAAGTTAAAATCTTTGGCTCCAACTCCGTCACCCTTATCATAGATGGTGATGTTAACTTTGCTTCGAGGATGGCAAAATATTCCACTTTGAGTACCCTTATAAGTCATGGGAAATGCTGATAATTAATATGGAATCCTAAAGGTATTGTGCTTGTATTCTCTCCCAGTTCTGCTCCCACCACTGTTTTGCGTTCACCTCTCCAAATTTTTCACGACTGAGTTAATGAAGAAGAAGTTAGAGAAATGCCAGTTGAAATTGCACTATCAACACATGAACTGACTTCCCTCGTATCAGACACTAGGAATGTCTACACTAGGTTACCTATGCTTCATCGTATATGGCACGTTAGAACGAAATAAAACAGAAGTTGTGAATTACCTGAATCTAACTCGACGTAGCTCTCTAGTTCCATCAGCTAATTGTCTGATAGTTATACACACTCCAGGTTCATCTTGTTCTATCCATTCTGACTCCATATCACTAGCATTACTTACAGAAACTGAAGCTTCGTCTCTAGAGGAGGTTGTCGTTCTTGATACCCCACTGCCCTTTGGGAAACTAGGGACATGAGCACCTAATCCAGCATTGTATTGTTGGAAATCCCTTGCAGATCCCGGCCTTGACGAATAATTTGAATCTCTCTGCAGAAAAAAGACCTTAAATTTCATTTACTTTCTTAAACTCTGTGTCAAATCAAAACCAGACAAAGAAAGTCTTACCCCATCCTCAGACTGTGAGGGTGTGTGAAGAGCATACTTATTAAATCTCTGAACATTGTAAAGCTCCATAATTCTGTCATAATTTTCACCCCACCATCTTTGAGCTTGCCATTTGTTGAACACGTCCCGACTTCAAAATAACAAATCAAATCTACTTTCTTAAACGACGTATCAAGTCAAAACTAGACAAAATAAAATTGAAACGCGGGGAGTAAAATGAAAGGAGATGATGAATAGATACCTAAATCTGATTCTTTTAAGATCATTTCCACCATGAGGAAGAGAATCAAAAGTAATCTGAATTCCAGGCTCCACTTGTGCTGTCCACTCTTTAGCCTCCTCTTCATCTTCCAACATCACATCACTTAATCTAGGATCAGTTCTAGTTGGTGTTTGGAAATGACCAGTACTTGTAAAATCCCAAGCTGGAGTAGAATTTGAACTTCCTGTTTGGTAATTATATAAAACTCCCTTAGAGATTGCATCAAAATCTGGATATGGATATGGTCCATGCCCTTTCTTGTAATTGTTGGTGGGTATACTACTTGACTTGCACCTATAAGCACCAGTGACCTTCAATGCTATATCTTTAATCTGCAATTGATTTAAAAAAAATTGAAAATATTGTAATAATATAAAAGAGTACTGAATCGTAGGTCTCTAACAGATATTCATCCATTATAAGTTCTCTTTATCTGTCTCAAGTCTTGCCGAGTAGAGTTATCCAATAGAATATAGTCAATGTCCACGCTTAGTTGATCCATGATTTATTGTTTAATCGTTCGTTGATCCGTTCATATTCCAATCAAGATGTATAGATCTTATTTATGGAGTAACGTAAAATATACAGAAACTCTATTTGCCTCTCGTTCTGAATCTAGTGATCAACCTATTCCGCACTATTTTAAGCCTTCGTAAACTCATTGCCATTTTCTATCATAGTGGAGGATTGCTTCCAACGATTGGGAAATAAAAAATACAAAAAAACATTGCTATATTTCAAACACTCTGGATAGGCGGAGGGATTTATCTCCGTCCCTAACTTCCTTTTAATCCACATCGGAAGATTTAGTTTTTCTCTATGACTACCAGGAATGGGCATATATTGGTTCGATAAGCCAAGCAAAAATAACCAATATATATGAAGTGCAAGCAAGAATAGAGCAGAGAGGGTGTAGAACCTGTGCTGTCAGGCTTTTGATAGAATCTTTAGTATTGGGAGAACCTCGAATACTTTCTTCTTCTCCACCATCATCTTCGACTTTTTGTTTACATGTAATGCATGTCAACATTTTTAACTGTCTTCTGTTTTGTTCCTCTGTTTATACGCTATATATTCAGCTTTCTTCTTCTAACTGCAAATGAAATATAAATGAATCATGAAACATAAGTAAACAATCATATCACACTGATTTTTGATATATTCATTTTGTGTGTTTTTGCTAACAAGATCATTTCAAATTTAAAATACAAACAAACTTTCCTTTAATAAAAATGTAGAGCTGTGATTTTCAATATTTCGAGATATTGGGAGATAATGCATTAATTTTCAGTCACTGTCTTTCAAGGTAAAAACATTAAATAGCAAATGATAGCTGGAATTTTTTTTACATTTTTTAAATCCAAACTATCCAAGGGTGTCAAAACTATTAGAACCACCACCAAAGGTTGTGATGATTAACGAAATAGTAAGTATTTATTCATCTTTAATTAAATATTTTAAATTTGAGCGAGTCATATTTGATATAAAGTGATTTACCCCGAACATTCTCAGAAATAATATCAAATGAAAAAACCAATAAAGTTATAATGTACTTGAAAAGTGATTCAACAAGTTAATTATTACTGCTTCGTTGATCATTACAATTGGGTACAAGGACATTTGCAAAAATTAGGACCACCCTATGCTGACAACAAGGGAGGAAAATAGGATTCTAATTAGAAAATGACAATATTTATGGAGAACAAATAGATACAAGGAAAAGTTACTCATATTTTCTCTCACACTGAAGTTTTAGGTTTAAATAAACTACTAAAACCATAAAAGTTAAGATAGAGAGTGACAATTACTCGTCCATTGAGGTCTTGAGTTAAGTCATTTTTTATAAAAATGTTTTATCTTTAAAGTAAGATTTTTTTATGTGAATTCAAACTAATCAATTTTCTTTATGGATACTAACGTGAAATGAAAAAATAAAAAAAGTTAAAAAACAAGAAAAGCAATTCAACAAGTTAATTATTTCACTGATCATTAAAAGTTAGATACAATTGGGTGCAAGGACATTTTTAAAGATTAGGACCACTATGCTATTTAACAAGGACAAGGAAAATAGGATTCTAGTTAGAAAAGGAGAATATATATGCATATAAAAGGAAAAATTACTGACATATTCTTCCAATTCGAAACCATAATTTTTTCCATTAAAAAGAAGCCGATATAACATTCTTGACTTCTTGTACCTTATAGAAAAAAAATATTGACAATATTTTATGAGTGATCTAGTTAATAAATAACTTTTTTTTATTATTGGTACGTAATACTTTAGCTCGATTTTTTTAAAAAAAAAAAGGACAAGAATTTGGGATTTTATAGGAGAAAAATGATATAATTAAATATTAAACGCTTAAAATCGCAAGTGGTGTCCTTGTGTTCTTGCTTTAATGTGCAAGTATGCCCAAAAACCCGAAAAAAGGAAAGAATAAAGATAGCAGACATTTCTACGCCTATTCATAATCCATTTGGGTCAGATTAATATTTAAGTGATAAAATATATTTTTTTAAATTTACTATTTTATAAATAAGTTTATTAAAACTAATAACAAACGTTTACGTATTCGATGTTTTATGAAATGAGATATCTTTTACTTTTACGAGTAAGGGTGGTGAAGTTAAAAATCAACATACGAGTTTGGTTGAATTTAATTAGAGTGATTGAAACGGAGAAACACATTTTTTTAAAAATCCTTTTCAATTTCTATATGTTTGGTTATTCAAAATACAAATTACTTAAAAATTATAAAAATGACTTTTCTAATAGAAATAGAGAAAACAAATTGAATAAGTGACACGTAAAGATAATTGTCTCCTACACATCCATCCAACCGCTCTAACTCTGACCCCGTGACCATCACACCGAAGCCCAATTCCCCTCATCATCCCACCCTCATATTATTTTATTAAATTACATATAAATATTTTTGAGATACTATTTTTTTCCACTTACTTACCAAATATTAGAAAATATTTATACAAAAAATATTTTCCTATACACACGAGTTTCTACTGCTTAATAAATTCATTCAAAATATACAAAAGTTAAATTCAGAAACCGGCCTAATTACTATTCAAAAAATATTAGTTCCGGCTTTGCTTATAAATATTTAATTCAATAACCACTTCAAATAAAAACAAAAGAATACTTCATATAACTTTTTAGAAATCATATGATAAAATGAATAAAATAGTACTAGTATCAAATAAGATGGATTACGAATTTACTATGATCTACGGGCGTACAGCATAGCACCGAGGAGAGAGAATTAAGTAGCAGTGGCATGCAGTAGCAGTATTAACAGCAGAACTAGCAGAGCAGGAGATGTTTGTGGAATGAATGACCAATCGCTTTACAAATGAATAAACAATGTCCACCTTTGAAAGGTGCCATTCAATATTCAAATAGACAACAAATTTCTATTCGCGGCGTAGCAAAAATAATAAATTTTGATATTTTAAGATAAAAGATTAATAATAGGGTTTGAATCTATAATACTAGTATGAAAAATATTTATACCGCCTCATTCATTGCATTGCTTTGTCATATAAAATTTACAAATAAACTATTAAATTCGTTTAAATTCATGAATTCTCACTATAAACTATATATTCATTTGTAAATAGTTATCAATAGATAAGAATATAACTTTAATTTGTTATTGTTATTGTTGATATTTTACTTCATTTTTTAAAAAAATATGAAAAATATTTTGAAATCTTATGACTAATATACCTATGTTTAACTTCGAATTTGACTTTTCAAAAGGAAATTGAAAATCTATTGTTAAATAATAGCATAAATTAGTGGTCTACATATAGTCGGAGTAATATTCAATGTCTAGCAGGAGAACACTAGGTTAACTCTTTTATCTGCCTACTACTCTTGACAGAGTGACCCAAAATAGAGCTGTGGTTTAAAGTGGTTTATTGGAAATTTTTTCTCAACAAAATTAAAATATTTTATATATATGGTAAACGTTGAATTTTAAACTTTTAAAGGTATTTTACATTCACTGGCTTTTAAAGGTATTTTACATTCGAGTGAGGATTCTGTGGTGAACACTTTGTGCGCACTCGGTAAATCTTTCTTACCACACAGGAAACGTAAACAACCGCACTAGCCAAGATCTATGTGATAGACTCGACTCATAAGGCGTTGAGGGTAAACCCTTCTTATGTACGTAATACCTTACAAACCACACAGGACATGTAAACAACTGCACTAGGCAAGATCTATGCGACAAACTCAACTCATAAGACATTAAGGAGGGATCGATCTCGAGCTATTCATGTGGATAACATCCTCCAAACCAACTTAGTCATTCGAGAGACCTTTTTAAAGGTATTTATTTCTTTATTTTAAAAATTTTTTTAGTAAAAAAAAAACTTAGCTGCAACAGAAATTTCATTGTCTAAAGTTAACTCGATATTTGTACAAATGAGGGGGAGGTATAGTGAGGTGCACGTAAAAGCAATGCAATAGTGACACCAAAATGGAGTTGGAAGATTCATACCTCAAACCGCTACTGGCCGGAGCTAGCTAGATAATCATCTTAAACTCACCGATAAAAATGGCGTCCACAGCAACAATCTGCTTTGCTCCGTCACTTACATATTCAGTAACCAGAGAGAACGCAGGCGAAAATCCTTAAGCAAGACATTCAAATTCCAAATCAAATCAATAACAGCGAAAATATCGAAAATCCGGCTCACACTCTCAATAGCAATAGTGTATCACATAATCAAATGAGTGAAATAGATATAATCGGTAAATCAATACCTCAAATCATCATCTCACGAGTAAAATGGCGTCCGGAGCAACAAACTCTGTTACGTATTCGAAATACGTGAAAATGAAGGGGGAGATCCTAAGCAAATCGTACAGATATCAAATCAAATAACAGGGAAAACATTGAAAAGAAGCTCTCTCTCTCTCAGAAAAATCCATACCTCAAATGACTACTGACCGGAGCTGATAATCATCTGAAAGTCACCGGTAAAAATGCCGTTCAGAGAGAGCTATAATCTACTTTCGCTCTATTCTCTTTACACATTCAAAAAAACGAGGAAAATCCTTAATCAACGGTTCCAATATCAAATCAATAACAGCAAAATATCGAATAATCCGCTCTCACTCTCTAAACAGAGAGCAACAATTTGCTTTTGCTCTATTCTATTGACATATTCAAAAAAACGAGAAAATGCAGGGGAAAATCCTTAATCAACGGTTCCAATAT</genome_strand>
        <mrna_strand>GGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACCCCCCCCA-AAGGGGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTAATTTTTTTAG-GGGCCCCCAAA-AAAGGGGGGGGAAAAAG-G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAA-ATTTTTTC-CGGGGGAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720760" ref_strand="+" ref_description="SGN-E720760 [FC11DB01]">
      <seq>ggcttattttctacccccataaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccccccaaaagggcccctttgaattttttttggggcccccaaaaaaggggggggaaaacgggggaaaatttttttccgggggaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105108" stop="41621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104809" g_stop="104651" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="257" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="290" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="520" r_length="230" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101690" i_stop="98537" i_length="3154">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98536" g_stop="98501" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="556" r_length="36" r_score="0.778"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="98500" i_stop="97682" i_length="819">
            <donor d_prob="0.534" d_score="0.00"/>
            <acceptor a_prob="0.075" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97681" g_stop="97651" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="587" r_length="31" r_score="0.548"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="97650" i_stop="95296" i_length="2355">
            <donor d_prob="0.506" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95295" g_stop="95211" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="670" r_length="83" r_score="0.494"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E720760" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104809" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
          <exon e_start="98536" e_stop="98501"/>
          <exon e_start="97681" e_stop="97651"/>
          <exon e_start="95295" e_stop="95211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAAGATCAAGATATGTCTCTGCCCCCCTTGGGGCATCCTCATCCCACAGGGGCGGAGCTAGAAGGTTATCGTAAGGGTACAACCGAATCCAGATCTACTATATGTATACAAAAACTTAGCTCCGAGCCACATTACATACACGTGATGTTGCTATTTTAGAATTTAGAATTTCATAAAGTTAAAATCTTTGGCTCCAACTCCGTCACCCTTATCATAGATGGTGATGTTAACTTTGCTTCGAGGATGGCAAAATATTCCACTTTGAGTACCCTTATAAGTCATGGGAAATGCTGATAATTAATATGGAATCCTAAAGGTATTGTGCTTGTATTCTCTCCCAGTTCTGCTCCCACCACTGTTTTGCGTTCACCTCTCCAAATTTTTCACGACTGAGTTAATGAAGAAGAAGTTAGAGAAATGCCAGTTGAAATTGCACTATCAACACATGAACTGACTTCCCTCGTATCAGACACTAGGAATGTCTACACTAGGTTACCTATGCTTCATCGTATATGGCACGTTAGAACGAAATAAAACAGAAGTTGTGAATTACCTGAATCTAACTCGACGTAGCTCTCTAGTTCCATCAGCTAATTGTCTGATAGTTATACACACTCCAGGTTCATCTTGTTCTATCCATTCTGACTCCATATCACTAGCATTACTTACAGAAACTGAAGCTTCGTCTCTAGAGGAGGTTGTCGTTCTTGATACCCCACTGCCCTTTGGGAAACTAGGGACATGAGCACCTAATCCAGCATTGTATTGTTGGAAATCCCTTGCAGATCCCGGCCTTGACGAATAATTTGAATCTCTCTGCAGAAAAAAGACCTTAAATTTCATTTACTTTCTTAAACTCTGTGTCAAATCAAAACCAGACAAAGAAAGTCTTACCCCATCCTCAGACTGTGAGGGTGTGTGAAGAGCATACTTATTAAATCTCTGAACATTGTAAAGCTCCATAATTCTGTCATAATTTTCACCCCACCATCTTTGAGCTTGCCATTTGTTGAACACGTCCCGACTTCAAAATAACAAATCAAATCTACTTTCTTAAACGACGTATCAAGTCAAAACTAGACAAAATAAAATTGAAACGCGGGGAGTAAAATGAAAGGAGATGATGAATAGATACCTAAATCTGATTCTTTTAAGATCATTTCCACCATGAGGAAGAGAATCAAAAGTAATCTGAATTCCAGGCTCCACTTGTGCTGTCCACTCTTTAGCCTCCTCTTCATCTTCCAACATCACATCACTTAATCTAGGATCAGTTCTAGTTGGTGTTTGGAAATGACCAGTACTTGTAAAATCCCAAGCTGGAGTAGAATTTGAACTTCCTGTTTGGTAATTATATAAAACTCCCTTAGAGATTGCATCAAAATCTGGATATGGATATGGTCCATGCCCTTTCTTGTAATTGTTGGTGGGTATACTACTTGACTTGCACCTATAAGCACCAGTGACCTTCAATGCTATATCTTTAATCTGCAATTGATTTAAAAAAAATTGAAAATATTGTAATAATATAAAAGAGTACTGAATCGTAGGTCTCTAACAGATATTCATCCATTATAAGTTCTCTTTATCTGTCTCAAGTCTTGCCGAGTAGAGTTATCCAATAGAATATAGTCAATGTCCACGCTTAGTTGATCCATGATTTATTGTTTAATCGTTCGTTGATCCGTTCATATTCCAATCAAGATGTATAGATCTTATTTATGGAGTAACGTAAAATATACAGAAACTCTATTTGCCTCTCGTTCTGAATCTAGTGATCAACCTATTCCGCACTATTTTAAGCCTTCGTAAACTCATTGCCATTTTCTATCATAGTGGAGGATTGCTTCCAACGATTGGGAAATAAAAAATACAAAAAAACATTGCTATATTTCAAACACTCTGGATAGGCGGAGGGATTTATCTCCGTCCCTAACTTCCTTTTAATCCACATCGGAAGATTTAGTTTTTCTCTATGACTACCAGGAATGGGCATATATTGGTTCGATAAGCCAAGCAAAAATAACCAATATATATGAAGTGCAAGCAAGAATAGAGCAGAGAGGGTGTAGAACCTGTGCTGTCAGGCTTTTGATAGAATCTTTAGTATTGGGAGAACCTCGAATACTTTCTTCTTCTCCACCATCATCTTCGACTTTTTGTTTACATGTAATGCATGTCAACATTTTTAACTGTCTTCTGTTTTGTTCCTCTGTTTATACGCTATATATTCAGCTTTCTTCTTCTAACTGCAAATGAAATATAAATGAATCATGAAACATAAGTAAACAATCATATCACACTGATTTTTGATATATTCATTTTGTGTGTTTTTGCTAACAAGATCATTTCAAATTTAAAATACAAACAAACTTTCCTTTAATAAAAATGTAGAGCTGTGATTTTCAATATTTCGAGATATTGGGAGATAATGCATTAATTTTCAGTCACTGTCTTTCAAGGTAAAAACATTAAATAGCAAATGATAGCTGGAATTTTTTTTACATTTTTTAAATCCAAACTATCCAAGGGTGTCAAAACTATTAGAACCACCACCAAAGGTTGTGATGATTAACGAAATAGTAAGTATTTATTCATCTTTAATTAAATATTTTAAATTTGAGCGAGTCATATTTGATATAAAGTGATTTACCCCGAACATTCTCAGAAATAATATCAAATGAAAAAACCAATAAAGTTATAATGTACTTGAAAAGTGATTCAACAAGTTAATTATTACTGCTTCGTTGATCATTACAATTGGGTACAAGGACATTTGCAAAAATTAGGACCACCCTATGCTGACAACAAGGGAGGAAAATAGGATTCTAATTAGAAAATGACAATATTTATGGAGAACAAATAGATACAAGGAAAAGTTACTCATATTTTCTCTCACACTGAAGTTTTAGGTTTAAATAAACTACTAAAACCATAAAAGTTAAGATAGAGAGTGACAATTACTCGTCCATTGAGGTCTTGAGTTAAGTCATTTTTTATAAAAATGTTTTATCTTTAAAGTAAGATTTTTTTATGTGAATTCAAACTAATCAATTTTCTTTATGGATACTAACGTGAAATGAAAAAATAAAAAAAGTTAAAAAACAAGAAAAGCAATTCAACAAGTTAATTATTTCACTGATCATTAAAAGTTAGATACAATTGGGTGCAAGGACATTTTTAAAGATTAGGACCACTATGCTATTTAACAAGGACAAGGAAAATAGGATTCTAGTTAGAAAAGGAGAATATATATGCATATAAAAGGAAAAATTACTGACATATTCTTCCAATTCGAAACCATAATTTTTTCCATTAAAAAGAAGCCGATATAACATTCTTGACTTCTTGTACCTTATAGAAAAAAAATATTGACAATATTTTATGAGTGATCTAGTTAATAAATAACTTTTTTTTATTATTGGTACGTAATACTTTAGCTCGATTTTTTTAAAAAAAAAAAGGACAAGAATTTGGGATTTTATAGGAGAAAAATGATATAATTAAATATTAAACGCTTAAAATCGCAAGTGGTGTCCTTGTGTTCTTGCTTTAATGTGCAAGTATGCCCAAAAACCCGAAAAAAGGAAAGAATAAAGATAGCAGACATTTCTACGCCTATTCATAATCCATTTGGGTCAGATTAATATTTAAGTGATAAAATATATTTTTTTAAATTTACTATTTTATAAATAAGTTTATTAAAACTAATAACAAACGTTTACGTATTCGATGTTTTATGAAATGAGATATCTTTTACTTTTACGAGTAAGGGTGGTGAAGTTAAAAATCAACATACGAGTTTGGTTGAATTTAATTAGAGTGATTGAAACGGAGAAACACATTTTTTTAAAAATCCTTTTCAATTTCTATATGTTTGGTTATTCAAAATACAAATTACTTAAAAATTATAAAAATGACTTTTCTAATAGAAATAGAGAAAACAAATTGAATAAGTGACACGTAAAGATAATTGTCTCCTACACATCCATCCAACCGCTCTAACTCTGACCCCGTGACCATCACACCGAAGCCCAATTCCCCTCATCATCCCACCCTCATATTATTTTATTAAATTACATATAAATATTTTTGAGATACTATTTTTTTCCACTTACTTACCAAATATTAGAAAATATTTATACAAAAAATATTTTCCTATACACACGAGTTTCTACTGCTTAATAAATTCATTCAAAATATACAAAAGTTAAATTCAGAAACCGGCCTAATTACTATTCAAAAAATATTAGTTCCGGCTTTGCTTATAAATATTTAATTCAATAACCACTTCAAATAAAAACAAAAGAATACTTCATATAACTTTTTAGAAATCATATGATAAAATGAATAAAATAGTACTAGTATCAAATAAGATGGATTACGAATTTACTATGATCTACGGGCGTACAGCATAGCACCGAGGAGAGAGAATTAAGTAGCAGTGGCATGCAGTAGCAGTATTAACAGCAGAACTAGCAGAGCAGGAGATGTTTGTGGAATGAATGACCAATCGCTTTACAAATGAATAAACAATGTCCACCTTTGAAAGGTGCCATTCAATATTCAAATAGACAACAAATTTCTATTCGCGGCGTAGCAAAAATAATAAATTTTGATATTTTAAGATAAAAGATTAATAATAGGGTTTGAATCTATAATACTAGTATGAAAAATATTTATACCGCCTCATTCATTGCATTGCTTTGTCATATAAAATTTACAAATAAACTATTAAATTCGTTTAAATTCATGAATTCTCACTATAAACTATATATTCATTTGTAAATAGTTATCAATAGATAAGAATATAACTTTAATTTGTTATTGTTATTGTTGATATTTTACTTCATTTTTTAAAAAAATATGAAAAATATTTTGAAATCTTATGACTAATATACCTATGTTTAACTTCGAATTTGACTTTTCAAAAGGAAATTGAAAATCTATTGTTAAATAATAGCATAAATTAGTGGTCTACATATAGTCGGAGTAATATTCAATGTCTAGCAGGAGAACACTAGGTTAACTCTTTTATCTGCCTACTACTCTTGACAGAGTGACCCAAAATAGAGCTGTGGTTTAAAGTGGTTTATTGGAAATTTTTTCTCAACAAAATTAAAATATTTTATATATATGGTAAACGTTGAATTTTAAACTTTTAAAGGTATTTTACATTCACTGGCTTTTAAAGGTATTTTACATTCGAGTGAGGATTCTGTGGTGAACACTTTGTGCGCACTCGGTAAATCTTTCTTACCACACAGGAAACGTAAACAACCGCACTAGCCAAGATCTATGTGATAGACTCGACTCATAAGGCGTTGAGGGTAAACCCTTCTTATGTACGTAATACCTTACAAACCACACAGGACATGTAAACAACTGCACTAGGCAAGATCTATGCGACAAACTCAACTCATAAGACATTAAGGAGGGATCGATCTCGAGCTATTCATGTGGATAACATCCTCCAAACCAACTTAGTCATTCGAGAGACCTTTTTAAAGGTATTTATTTCTTTATTTTAAAAATTTTTTTAGTAAAAAAAAAACTTAGCTGCAACAGAAATTTCATTGTCTAAAGTTAACTCGATATTTGTACAAATGAGGGGGAGGTATAGTGAGGTGCACGTAAAAGCAATGCAATAGTGACACCAAAATGGAGTTGGAAGATTCATACCTCAAACCGCTACTGGCCGGAGCTAGCTAGATAATCATCTTAAACTCACCGATAAAAATGGCGTCCACAGCAACAATCTGCTTTGCTCCGTCACTTACATATTCAGTAACCAGAGAGAACGCAGGCGAAAATCCTTAAGCAAGACATTCAAATTCCAAATCAAATCAATAACAGCGAAAATATCGAAAATCCGGCTCACACTCTCAATAGCAATAGTGTATCACATAATCAAATGAGTGAAATAGATATAATCGGTAAATCAATACCTCAAATCATCATCTCACGAGTAAAATGGCGTCCGGAGCAACAAACTCTGTTACGTATTCGAAATACGTGAAAATGAAGGGGGAGATCCTAAGCAAATCGTACAGATATCAAATCAAATAACAGGGAAAACATTGAAAAGAAGCTCTCTCTCTCTCAGAAAAATCCATACCTCAAATGACTACTGACCGGAGCTGATAATCATCTGAAAGTCACCGGTAAAAATGCCGTTCAGAGAGAGCTATAATCTACTTTCGCTCTATTCTCTTTACACATTCAAAAAAACGAGGAAAATCCTTAATCAACGGTTCCAATATCAAATCAATAACAGCAAAATATCGAATAATCCGCTCTCACTCTCTAAACAGAGAGCAACAATTTGCTTTTGCTCTATTCTATTGACATATTCAAAAAAACGAGAAAATGCAGGGGAAAATCCTTAATCAACGGTTCCAAT</genome_strand>
        <mrna_strand>GGCTTATTTTCTACCCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACCCCCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGGCCCCTTTG-AATTTTTTTTGGGGCCCCCAAAAAAGGGGGGGGAAAACGGGGGAAAAT-TTTTTTCCGGGGGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698525" ref_strand="+" ref_description="SGN-E698525 [FA06CF10]">
      <seq>agaaagggcatggaccatatccatatccttattttgatgcaatctctaagggagttttatataattaccaaacaggaagttcaaattctactccagcttgggattttacaagtactggtcatttccaaacaccaactagaactgatcctagattaagtgatgtgatgttggaagatgaagaggaggctaaagagtggacagcacaagtggagcctggaattcagattacttttgattctcttcctcatggtggaaatgatcttaaaagaatcagatttagtcgggacgtgttcaacaaatggcaagctcaaagatggtggggtgaaaattatgacagaattatggagctttacaatgttcagagatttaataagtatgctcttcacacaccctcacagtctgaggatgggagagattcaaattattcgtcaaggccgggatctgcaagggatttccaacaatacaatgctggattaggtgctcatgtccctagtttcccaaagggcagtggggtatcaagaacgacaacctcctctagagacgaagcttcagtttctgtaagtaatgctagtgatatggagtcagaatggatagaaccagatgaacctggagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="99899" stop="101302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100199" g_stop="100478" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100479" i_stop="100589" i_length="111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100590" g_stop="100719" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="410" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100720" i_stop="100797" i_length="78">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100798" g_stop="101002" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="615" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E698525" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100199" e_stop="100478"/>
          <exon e_start="100590" e_stop="100719"/>
          <exon e_start="100798" e_stop="101002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAGGTATCTATTCATCATCTCCTTTCATTTTACTCCCCGCGTTTCAATTTTATTTTGTCTAGTTTTGACTTGATACGTCGTTTAAGAAAGTAGATTTGATTTGTTATTTTGAAGTCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGGGTAAGACTTTCTTTGTCTGGTTTTGATTTGACACAGAGTTTAAGAAAGTAAATGAAATTTAAGGTCTTTTTTCTGCAGAGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGT</genome_strand>
        <mrna_strand>AGAAAGGGCATGGACCATATCCATATCCTTATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG...............................................................................................................TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG..............................................................................AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACCAGATGAACCTGGAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234463" ref_strand="+" ref_description="SGN-E234463 [cLEL-8-J18](-)">
      <seq>tccgtcgcaactccgataaaaaaaaatgcggccggcggcggtgctactggtgtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105065" stop="33864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104765" g_stop="104651" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="210" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="243" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="473" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101690" i_stop="101627" i_length="64">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101626" g_stop="101611" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="489" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E234463" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104765" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
          <exon e_start="101626" e_stop="101611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAA</genome_strand>
        <mrna_strand>TCCGTCGCAACTCCGATA-AAAAAAAAT-GCGGCCGGCGGCGGTGCTACTGGT-GTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233873" ref_strand="+" ref_description="SGN-E233873 [cLEL-8-J18](-)">
      <seq>aaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctcccccaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttatataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="104967" stop="33864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104667" g_stop="104651" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="116" r_length="99" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="149" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="379" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="101690" i_stop="101627" i_length="64">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.582" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="101626" g_stop="101611" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="395" r_length="16" r_score="0.562"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E233873" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104667" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
          <exon e_start="101626" e_stop="101611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCT-CCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATAGTCGGTCTATCATTTAGATAGATAGTTACTAGTTTTTGATGCTTAGAAAATTTGAAACATATAGAAGTAGGAAACTGAAA</genome_strand>
        <mrna_strand>AAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCCCCAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733687" ref_strand="+" ref_description="SGN-E733687 [LB10CG02]">
      <seq>cataaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105092" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104792" g_stop="104651" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="240" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="273" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="503" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E733687" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104792" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>CATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549249" ref_strand="+" ref_description="SGN-E549249 [TUS-68-K20]">
      <seq>aaatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatanttgtggattttataaaananannnnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105089" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104789" g_stop="104651" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="237" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="501" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="526"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E549249" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104789" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATA-TTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATANTTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312558" ref_strand="+" ref_description="SGN-E312558 [cLEZ-20-A12]">
      <seq>aatctaatcccgtaacgcttttctccgtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105088" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104788" g_stop="104651" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="236" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="269" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="499" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="513"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E312558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104788" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540617" ref_strand="+" ref_description="SGN-E540617 [TUS-60-P20](-)">
      <seq>aaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctccttttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105043" stop="101400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104743" g_stop="104651" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="191" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="453" r_length="229" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E540617" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104743" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTTTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTG-GGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540620" ref_strand="+" ref_description="SGN-E540620 [TUS-60-P20]">
      <seq>aaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105043" stop="101400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104743" g_stop="104651" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="191" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="454" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E540620" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104743" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289620" ref_strand="+" ref_description="SGN-E289620 [cLET-4-F23]">
      <seq>aaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105042" stop="101400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104742" g_stop="104651" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="190" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="223" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="453" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E289620" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104742" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548416" ref_strand="+" ref_description="SGN-E548416 [TUS-60-P24]">
      <seq>aaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105042" stop="101400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104742" g_stop="104651" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="190" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="223" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="453" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E548416" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104742" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>AAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308978" ref_strand="+" ref_description="SGN-E308978 [cLEY-23-F11]">
      <seq>ctcgtgccgaattcggcacgaggattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="104821" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104543" g_stop="104476" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="97" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101920" g_stop="101691" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="327" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E308978" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104543" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA</genome_strand>
        <mrna_strand>CTC-GTGCCG-AATTCGGCAC-GAGG-ATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713377" ref_strand="+" ref_description="SGN-E713377 [FB08BH05]">
      <seq>gtcgcaactccgatagaaaaaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatatattgtggattttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105062" stop="101391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104762" g_stop="104651" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="210" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="243" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101696" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="468" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="489"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E713377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104762" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTT</genome_strand>
        <mrna_strand>GTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540624" ref_strand="+" ref_description="SGN-E540624 [TUS-60-P24](-)">
      <seq>aaaaatggcgaccggcggcggtgctactggtggtggaggaaaagtttcgttcaaagtcactctcacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgctgaggaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctggtaatgtttttcttaaacatggctctgaactgcgtctaattccgcgcgacagggttggtgctcaatggatgccatactgagcaatctttacccatgtatttaacctatacttctttctcctcttgagtgcaactttcgacgttgtaatatcgaatatggttgaatatcaaacgaaatgaataatgtccttttatccatggagctaataaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105043" stop="101407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104743" g_stop="104651" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="191" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="224" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101920" g_stop="101707" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="438" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E540624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104743" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="101920" e_stop="101707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATA</genome_strand>
        <mrna_strand>AAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480761" ref_strand="+" ref_description="SGN-E480761 [cSTD-15-O21]">
      <seq>cttttgcttattttctacgcccataaatccaattccgtaacgcttttctccgtcgtaactccgataggaaaaaatggcgaccggcggcggtgctactggtggaggaggaaaagtttccttcaaagttactcttacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgccgaagaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctgtaatgtggacagcaagtttttagagttattggaaagtggagacgagttcaattgactattgcttgacataaactagacttctaacctgcgatcatgcctagttaccaagtaatttgcttcaagaaggacgatgtatccttatgctttcggaccacagttctcatttgcttaccgatgcagtgcatatcacctatagttacaattgcatgtactttggaagtaatgtttttcttaaacatggttctgaactgcggctgattccgcgcgatagggttggtgctcactggatgtcatactgagcaatatatacccatgtatttaacctatacttctttcccctcttgagtagcacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105113" stop="101485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104813" g_stop="104651" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="260" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="293" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="102722" i_length="865">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102721" g_stop="102677" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="333" r_length="40" r_score="0.644"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102676" i_stop="102179" i_length="498">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102178" g_stop="102008" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="512" r_length="179" r_score="0.842"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102007" i_stop="101921" i_length="87">
            <donor d_prob="0.406" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101920" g_stop="101784" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="649" r_length="137" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E480761" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104813" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="102721" e_stop="102677"/>
          <exon e_start="102178" e_stop="102008"/>
          <exon e_start="101920" e_stop="101784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCT-GACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCT-A------A-CATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTC</genome_strand>
        <mrna_strand>CTTTTGCTTATTTTCTACGCCCATAAATCCAATTCCGTAACGCTTTTCTCCGTCGTAACTCCGATAG-GAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGAGGAGGAAAAGTTTCCTTCAAAGTTACTCTTACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCCGAAGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGTGGACAG---CAAGTTTTTAGAGT-TATT-GGAAAGT-GGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGTTCAATTGACTATTGCTTGACATAAACTAGACTTCTAACCTGCGATCATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATCCTTATGCTTTCGGACCACAGTTCTCATTTGCTTACCGATGCAGTGCATATCACCTATAGTTACAATTGCATGTACTTTGGAA.......................................................................................GTAATGTTTTTCTTAAACATGGTTCTGAACTGCGGCTGATTCCGCGCGATAGGGTTGGTGCTCACTGGATGTCATACTGAGCAATATATACCCATGTATTTAACCTATACTTCTTTCCCCTCTTGAGTAGCACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480762" ref_strand="+" ref_description="SGN-E480762 [cSTD-15-O23]">
      <seq>cttttgcttattttctacgcccataaatccaattccgtaacgcttttctccgtcgtaactccgataggaaaaaatggcgaccggcggcggtgctactggtggaggaggaaaagtttccttcaaagttactcttacttccgatcctaaattgcctttcaaagtttttagcgttccggaagctgctccgttcaccgctgtgctgaaatttgctgccgaagaattcaaagtacctccacaaactagcgccattatcactaatgatggagtgggtattaatcctcaacaaagtgctgtaatgtggacagcaagtttttagagttattggaaagtggagacgagttcaattgactattgcttgacataaactagacttctaacctgcgatcatgcctagttaccaagtaatttgcttcaagaaggacgatgtatccttatgctttcggaccacagttctcatttgcttaccgatgcagtgcatatcacctatagttacaattgcatgtactttggaagtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105113" stop="101702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104813" g_stop="104651" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104573" g_stop="104476" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="260" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103619" g_stop="103587" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="293" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="103586" i_stop="102722" i_length="865">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102721" g_stop="102677" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="333" r_length="40" r_score="0.644"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102676" i_stop="102179" i_length="498">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102178" g_stop="102008" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="512" r_length="179" r_score="0.842"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102007" i_stop="101921" i_length="87">
            <donor d_prob="0.406" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101920" g_stop="101916" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="517" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E480762" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104813" e_stop="104651"/>
          <exon e_start="104573" e_stop="104476"/>
          <exon e_start="103619" e_stop="103587"/>
          <exon e_start="102721" e_stop="102677"/>
          <exon e_start="102178" e_stop="102008"/>
          <exon e_start="101920" e_stop="101916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGTGTATGTATTATTTTTTATATCTGAAATTCTCTTTTTTTCTCTTTGATTTTACACCTTATCTGTGTTATTTTCTTCAGTTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATGGTATAAAATTCCTTGTATTTTAGACGTTTGTGTAATTTAATTTTTGGCTGAAGTTGCTGTAGAATCATTGATTACATGTACTGTAGTTAATTTTTTGAATTAGTTATATTGTTTGGTTAGATTAAAAAATGGAGTTCGATGAATTTGCTCGAATCAAATCAGGAGCAGTAATGAAACTAGTTTGATCCAGCTGGGAGGTAGTTTTGCTCCGGGGGCGGAGCTAGAAGGTTACGTATTTGTATTAAGAAATCTACTCAATAGATCAACAACATGCCTAGGGAAATTTTTACGAGCGGTGTCTAGGGGAGGGTAGTATGGTCGTGAAGGTCTAGGCTCTTTGCGGGAAGATACTTGGCTCGAGTGCATCAAATCAAAGTAGTTGAGAAATCCACTTAAGATGTACATAAGTTAAATTTAACACCTACACCTTGATTTTCAGATGTAAAGGTCAAATCGTGGCTTCGCCTTTGGTTTCACTTATAACAAGGTAGATGAATAATGTAATTCACCTCAGGTGAAAGCAAATGTTTAACAAAATTGATTATGGTGATTGAGGAAATTGAACATTATGTTATTCACCTTAGTGAAAGCAAACGATTCATGTTTAAGATAATCGTTTATGGTGACTGAGAAAATAAAGATATCATCCGTATTGTGGTGAAGAAAACGATATATTTGGTTTATTTTGACTATGTTTTCTTATTTGTTAGTCTAATGAGGAACAGGAAATAAAGCAATTTGGAATTTGGTTTTCTTACTCATTGCCTGTATAATTAGAAAAAAGAAACGCATGCTTTTACTAAATGTATGTCTTGTTTTGACACTATTTCTTTGTCCTTTTTATCATATTTTGCAGATGGAGTGGGTATTAATCCTCAACAAAGTGCTGGTAACTTTACGCTTTTTACATTTTTGTTTATAGTTACCTCCTGTATGTACTTCATGATAGTTTATTTTTGATTTATGGATGATAAACAATCTGTGAATTGGGATACATGTGAGCAAAATTCAATGAACTAAATAATATCATGTACCCATGGATCGGTTAAATAATTATATATGAGCTCTTTAGTAGATTATTAACCAAATCTATGTGGGAAGTTTATGACAGTCAATGAGTTGTGTTACAAAGTTGGTTTCAGAGTGTTGATGAACAGTGATAAGGAGTAGAAAGTATCGATAGTGTCAATTCGAATAATCTAAGTTTATAATGAGAAGTGCTAGAATAAACTTCTCATCACGAAGTTGTCATCTTGAACCCCCTTTCTCAAATTATGATTTGTTGGTTTCACGGGACATTTTTCGCTCACTCTTTAACTGTTCTATGTTAATTTTCTTAGTGAGCTTTGTGTGTTCATCATACATAGCTCAATGTGTTGTATCGTGTATGCGTCTGACCTAAGGTATATACAGTCATGAACTTTGTGCACCAACCTAGATTACTTTCTGGGTTGCCAGATAACAATCTACTACTGCCTCTTTGCCACTGGTTACGCCTTTCATTTTCCCACGATCTTAGTTCTTGTTCTTCAAGTTCTGTAGTAAGTGCTTATGAATGGATGTGTGTGGTATTTATTTATTTTTCCTGTTTTCTTTTTGTTGTAATATTTACCAAGAGGCTCCATCGTTATCGCAATGACCTTACTTTTCCTATTGACTGACGATTCATAGCACCTCGATCCACTTGGGGAAGTTTCACTTTTTGAACTTCCACAGTGCATAAATTAGTGCAAAGGATTCTTCTTTATCCATCATAATCT-GACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGATGCATTCCCAGTCTCTAATCGTCTAGCCTTTTCCCCATCAAGTCATCTATAATTTTGATATGAGGAATCGAACATTAACCGTCTTCTTTAAAAACTTTCAGAAGGCAAAATTAGATTCTAGTCCTTTAAATCTTCTATGGGCTCTACATCTTGCCGCTACACTTCCAAAATGTTGTTTTACATTTTCGAAACATTGGTGACTATTTACCAGTCTTTGCCAACTAAGAAGCAACATGATGCCCAGTCGTGCTTGACACTTCTTTCAAAGGTTGTGAAGTACAGATTCCGAGGTTGATTTGTATGACAAGCAGATATTCAGAAGTAGGATTTTTTATTTTTTGGAGTGCAACGGAAATCTGAACTGAAAATCCATGTCGTTACTTAGAAGAGTTCTGTGCCGGAGTTGTTTAAGGTCTGGTCATGTTTTGTGTTTGCATTTTCGGTAATACTTAGTAGGTTCTGATTTAGCTTTTCCTTTTCCCCTTTGCATATTTCTACTACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCT-A------A-CATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAAGTATAACTTCTTAAATTCCGTCCCTTTTTGCCACAATATTTGTTTATCTAGTTTTCTAACTTTATATAAACTCAAATGGTTTTTCAGGTAAT</genome_strand>
        <mrna_strand>CTTTTGCTTATTTTCTACGCCCATAAATCCAATTCCGTAACGCTTTTCTCCGTCGTAACTCCGATAG-GAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGAGGAGGAAAAGTTTCCTTCAAAGTTACTCTTACTTCCGATCCTAAATTGCCTTTCAAAGT.............................................................................TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCCGAAGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGTGGACAG---CAAGTTTTTAGAGT-TATT-GGAAAGT-GGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGTTCAATTGACTATTGCTTGACATAAACTAGACTTCTAACCTGCGATCATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATCCTTATGCTTTCGGACCACAGTTCTCATTTGCTTACCGATGCAGTGCATATCACCTATAGTTACAATTGCATGTACTTTGGAA.......................................................................................GTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739824" ref_strand="+" ref_description="SGN-E739824 [LC19AB05]">
      <seq>atcttcttctataaattctcctcttcgttcttctccaaatatcatctagggttagctcccaattctccagtcgccatcgattcagtggccgccattgataccataccgccggtattgtataatttgcttagttttagttttcatatagtaactgtattctgtttactttgcacttcgcaatcatataagcttcgctaaattctcaagttagtgcagtcttacagcgttagtgcgtataggaaaagctgaatttatcagcggcggccagacaaccgttgagatgaatccacagatgggtttcgtttttgctcctgtctactaatttcttctcacattttgctgttattatatctgtagttttttcaatttgatggtacaatttggaaattggggcgagttatcagtactcgtataacccaaagtatctatatcatcaagctgtctttgttgatgtagcatttgattttttctgttttccttcgggaagatgggaggattctatgttgtaatccgaagatggagatctcatatcctatagccttgtagagcggaatctctgctattactatttgggattgaccatgagaaatacattcaattcaacttaattttcatatcttcatgcctgtgatgaaatctattataaagaacaccatctttcgggactgaatggcccttaaggccttgttgtcaattctgcaattctgaggcttttatatgttatagttttgctttgcttgaactatgtgtaaactgctttgtgatttgaaatggaagtgatgaatatttccccaaatgatcgaaactgaaattactgagcgcttttcatgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="105962" stop="107397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106262" g_stop="107098" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E739824" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106262" e_stop="107098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCTTCTATAAATTCTCCTCTTCGTTCTTCTCCAAATATCATCTAGGGTTAGCTCCCAATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAGATGGAAGTGATGAATATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTCATGTATTTTC</genome_strand>
        <mrna_strand>ATCTTCTTCTATAAATTCTCCTCTTCGTTCTTCTCCAAATATCATCTAGGGTTAGCTCCCAATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAAATGGAAGTGATGAATATTTCCCCAAATGATCGAAACTGAAATTACTGAGCGCTTTTCATGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339766" ref_strand="+" ref_description="SGN-E339766 [cTOE-16-B6]">
      <seq>aattctccagtcgccatcgattcagtggccgccattgataccataccgccggtattgtataatttgcttagttttagttttcatatagtaactgtattctgtttactttgcacttcgcaatcatataagcttcgctaaattctcaagttagtgcagtcttacagcgttagtgcgtataggaaaagctgaatttatcagcggcggccagacaaccgttgagatgaatccacagatgggtttcgtttttgctcctgtctactaatttcttctcacattttgctgttattatatctgtagttttttcaatttgatggtacaatttggaaattggggcgagttatcagtactcgtataacccaaagtatctatatcatcaagctgtctttgttgatgtagcatttgattttttctgttttccttcgggaagatgggaggattctatgttgtaatccgaagatggagatctcatatcctatagccttgtagagcggaatctctgctattactatttgggattgaccatgagaaatacattcaattcaacttaattttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="106022" stop="107177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106322" g_stop="106884" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E339766" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106322" e_stop="106884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCAT</genome_strand>
        <mrna_strand>AATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738491" ref_strand="+" ref_description="SGN-E738491 [LC13DD10]">
      <seq>catcaagctgtctttgttgatgtagcatttgattttttctgttttccttcgggaagatgggaggattctatgttgtaatccgaagatggagatctcatatcctatagccttgtagagcggaatctctgctattactatttgggattgaccatgagaaatacattcaattcaacttaattttcatatcttcatgcctgtgatgaaatctattataaagaacaccatctttcgggactgaatggcccttaaggccttgttgtcaattctgcaattctgaggcttttatatgttatagttttgctttgcttgaactatgtgtaaactgctttgtgatttgagatggaagtgatgaatatttccccagatgatcgaagctgaaattactgagcgcttttcatgtattttctccttattaggagaaaatccaagccagatattctgatccatctccaattttcttccattttttctcttaaatcttcaaaaaaattgattattcagtgtttattatgatttttctgattgatttgaatatggatttgatgaatatttccccagatgatcgaagctgaaataactgagcgctttataatgcattttctcctctttaggggaaaatccaagccagatattctgatccatatgtattaatttcaattgttttctatgttttgattgttcatttgttagttgaatttgttgtatggagttgatgattatttccccagatgatcgaagctgaaattactgagcgctttttcatgtattttctccgttcaggggaaaattcaagccagatattctgatccatatacttacaatatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="106393" stop="107820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106693" g_stop="107520" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="828" r_length="828" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E738491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106693" e_stop="107520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAGATGGAAGTGATGAATATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTCATGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCTCCAATTTTCTTCCATTTTTTCTCTTAAATCTTCAAAAAAATTGATTATTCAGTGTTTATTATGATTTTTCTGATTGATTTGAATATGGATTTGATGAATATTTCCCCAGATGATCGAAGCTGAAATAACTGAGCGCTTTATAATGCATTTTCTCCTCTTTAGGGGAAAATCCAAGCCAGATATTCTGATCCATATGTATTAATTTCAATTGTTTTCTATGTTTTGATTGTTCATTTGTTAGTTGAATTTGTTGTATGGAGTTGATGATTATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTTCATGTATTTTCTCCGTTCAGGGGAAAATTCAAGCCAGATATTCTGATCCATATACTTACAATATGATT</genome_strand>
        <mrna_strand>CATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAGATGGAAGTGATGAATATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTCATGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCTCCAATTTTCTTCCATTTTTTCTCTTAAATCTTCAAAAAAATTGATTATTCAGTGTTTATTATGATTTTTCTGATTGATTTGAATATGGATTTGATGAATATTTCCCCAGATGATCGAAGCTGAAATAACTGAGCGCTTTATAATGCATTTTCTCCTCTTTAGGGGAAAATCCAAGCCAGATATTCTGATCCATATGTATTAATTTCAATTGTTTTCTATGTTTTGATTGTTCATTTGTTAGTTGAATTTGTTGTATGGAGTTGATGATTATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTTCATGTATTTTCTCCGTTCAGGGGAAAATTCAAGCCAGATATTCTGATCCATATACTTACAATATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369462" ref_strand="+" ref_description="SGN-E369462 [TUS-23-C5]">
      <seq>ctttgagacctgaatttattgattttgatgtcaactacaagcaattcttctgaggattttccccattgtttgaatactgtattctttttaactttttatatcgatgtacaaatgtacttagaaaaacttgatcatgaggttttagagatgtcaatagttggatcttgctattatttatggattcagtcatttgagataaataaatgtcactttttgttttatactttgatatttcattttgatggtaagactattgatattggggcgagttttttggtactcgtataatccgatgtatccatatcatcatagaataagctgtctttgttgatttagcactttgttttttctgttttcctttgggaagattgaagaatcctgtgttgtaatccgaagatggcgatctcatatcctatagccttgtggagcggaatctctgctattactatttgggattgaccatgagatatacattcaattcaacttaattttatatgcttagctaatctttgatgaaatttgatctttttttgtttttatgaactattattgttgaattttgtgtttatggatatgatgattatttccccagatgatcgaagttgaaattactgagcgcttttactgtattttctccttattaggagaaaatccaagccagatattctgatccatcacttatgttttgcatttatagagttgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108105" stop="109411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108405" g_stop="109111" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E369462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108405" e_stop="109111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTATGGATTCAGTCATTTGAGATAAATAAATGTCACTTTTTGTTTTATACTTTGATATTTCATTTTGATGGTAAGACTATTGATATTGGGGCGAGTTTTTTGGTACTCGTATAATCCGATGTATCCATATCATCATAGAATAAGCTGTCTTTGTTGATTTAGCACTTTGTTTTTTCTGTTTTCCTTTGGGAAGATTGAAGAATCCTGTGTTGTAATCCGAAGATGGCGATCTCATATCCTATAGCCTTGTGGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGATATACATTCAATTCAACTTAATTTTATATGCTTAGCTAATCTTTGATGAAATTTGATCTTTTTTTGTTTTTATGAACTATTATTGTTGAATTTTGTGTTTATGGATATGATGATTATTTCCCCAGATGATCGAAGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATT</genome_strand>
        <mrna_strand>CTTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTATGGATTCAGTCATTTGAGATAAATAAATGTCACTTTTTGTTTTATACTTTGATATTTCATTTTGATGGTAAGACTATTGATATTGGGGCGAGTTTTTTGGTACTCGTATAATCCGATGTATCCATATCATCATAGAATAAGCTGTCTTTGTTGATTTAGCACTTTGTTTTTTCTGTTTTCCTTTGGGAAGATTGAAGAATCCTGTGTTGTAATCCGAAGATGGCGATCTCATATCCTATAGCCTTGTGGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGATATACATTCAATTCAACTTAATTTTATATGCTTAGCTAATCTTTGATGAAATTTGATCTTTTTTTGTTTTTATGAACTATTATTGTTGAATTTTGTGTTTATGGATATGATGATTATTTCCCCAGATGATCGAAGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242678" ref_strand="+" ref_description="SGN-E242678 [cLED-30-F20]">
      <seq>tttgagacctgaatttattgattttgatgtcaactacaagcaattcttctgaggattttccccattgtttgaatactgtattctttttaactttttatatcgatgtacaaatgtacttagaaaaacttgatcatgaggttttagagatgtcaatagttggatcttgctattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108106" stop="108881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108406" g_stop="108581" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E242678" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108406" e_stop="108581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTA</genome_strand>
        <mrna_strand>TTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369461" ref_strand="+" ref_description="SGN-E369461 [TUS-23-C5](-)">
      <seq>agttgaaattactgagcgcttttactgtattttctccttattaggagaaaatccaagccagatattctgatccatcacttatgttttgcatttatagagttgaaatttgtacatttatgtcttccagtgctattattccaatttctgtgtttttttaaaacaatttttgatgaaatatattgataattatggtgtgtaaggatgatgaagaaatcattcggattcccactgatgtttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaatcaatcaattgctcttatcttcatttgaatgtagtacaaacatattgacctgttgctacgtgataaccatccttgtaaatggaagaacagtcggcgacaatgcgaagcaatttcagggagcagaacaaggtggttgagggaattgttgaaattttggaacatcaacttttcttcatgttttcagttatagtatagacattttgtgaactatgtaatacttgtttaaactaaataatatgatgtgatgcttcacaatacaatatacatatatttcgatggataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108705" stop="110017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109005" g_stop="109733" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E369461" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109005" e_stop="109733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGCTATCTAATGAAGTTCAAA</genome_strand>
        <mrna_strand>AGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238577" ref_strand="+" ref_description="SGN-E238577 [cLED-17-P15]">
      <seq>tgatccatcacttatgttttgcatttatagagttgaaatttgtacatttatgtcttccagtgctattattccaatttctgtgtttttttaaaacaatttttgatgaaatatattgataattatggtgtgtaaggatgatgaagaaatcattcggattcccactgatgtttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaatcaatcaattgctcttatcttcatttgaatgtagtacaaacatattgacctgttgctacgtgataaccatccttgtaaatggaagaacagtcggcgacaatgcgaagcaatttcagggagcagaacaaggtggttgagggaattgttgaaattttggaacatcaacttttcttcatgttttcagttatagtatagacattttgtgaactatgtaatacttgtttaaactaaataatatgatgtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108772" stop="109984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109072" g_stop="109684" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E238577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109072" e_stop="109684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCT</genome_strand>
        <mrna_strand>TGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368147" ref_strand="+" ref_description="SGN-E368147 [TUS-22-G6]">
      <seq>tgatccatcacttatgttttgcatttatagagttgaaatttgtacatttatgtcttccagtgctattattccaatttctgtgtttttttaaaacaatttttgatgaaatatattgataattatggtgtgtaaggatgatgaagaaatcattcggattcccactgatgtttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaatcaatcaattgctcttatcttcatttgaatgtagtacaaacatattgacctgttgctacgtgataaccatccttgtaaatggaagaacagtcggcgacaatgcgaagcaatttcagggagcagaacaaggtggttgagggaattgttgaaattttggaacatcaacttttcttcatgttttcagttatagtatagacattttgtgaactatgtaatacttgtttaaactaaataatatgatgtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108772" stop="109984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109072" g_stop="109684" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E368147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109072" e_stop="109684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCT</genome_strand>
        <mrna_strand>TGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539621" ref_strand="+" ref_description="SGN-E539621 [TUS-59-H16](-)">
      <seq>tcggattcccactgatgtttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108922" stop="109743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109222" g_stop="109444" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E539621" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109222" e_stop="109444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAAT</genome_strand>
        <mrna_strand>TCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539624" ref_strand="+" ref_description="SGN-E539624 [TUS-59-H16]">
      <seq>tcggattcccactgatgtttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108922" stop="109743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109222" g_stop="109444" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E539624" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109222" e_stop="109444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAAT</genome_strand>
        <mrna_strand>TCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285161" ref_strand="+" ref_description="SGN-E285161 [cLER-20-K20]">
      <seq>cggattcccactgatgtttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108923" stop="109743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109223" g_stop="109444" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E285161" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109223" e_stop="109444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAAT</genome_strand>
        <mrna_strand>CGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308576" ref_strand="+" ref_description="SGN-E308576 [cLEY-21-O5]">
      <seq>tttttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaatcaatcaattgctcttatcttcatttgaatgtagtacaaacatattgacctgttgctacgtgataaccatccttgtaaatggaagaacagtcggcgacaatgcgaagcaatttcagggagcagaacaaggtggttgagggaattgttgaaattttggaacatcaacttttcttcatgttttcagttatagtatagacattttgtgaactatgtaatacttgtttaaactaaataatatgatgtgatgcttcacaatacaatatacatatatttcgatggctatctaatgaagttcaaaattttttatcctatatcaagaagtgcatcgtctcatagttcatatgtagagaaaggtctgtttatatctcatttaaatcttcaataatttggtgatgggagatatggggtnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108939" stop="110147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109239" g_stop="109840" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="616"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E308576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109239" e_stop="109840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGCTATCTAATGAAGTTCAAAATTTTTTATCCTATATCAAGAAGTGCATCGTCTCATAGTTCATATGTAGAGAAAGGTCTGTTTATATCTCATTTAAATCTTCAATAATTTGGTGATGGGAGATATGG</genome_strand>
        <mrna_strand>TTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGCTATCTAATGAAGTTCAAAATTTTTTATCCTATATCAAGAAGTGCATCGTCTCATAGTTCATATGTAGAGAAAGGTCTGTTTATATCTCATTTAAATCTTCAATAATTTGGTGATGGGAGATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281167" ref_strand="+" ref_description="SGN-E281167 [cLER-7-D16]">
      <seq>tttaatgtgattactacaaccagctacttctgacttcacatcatagcactaccttttcctcttttatctttttttttaacttttatgtattgtttcttgttgttactgatattggcttgaagattgtaatttttggaattgtttaacaatggttgttttgtactctacttatggatttaaatctatttatatgaatcaatcaattgctcttatcttcatttgaatgtagtacaaacatattgacctgttgctacgtgataaccatccttgtaaatggaagaacagtcggcgacaatgcgaagcaatttcagggagcagaacaaggtggttgagggaattgttgaaattttggaacatcaacttttcttcatgttttcagttatagtatagacattttgtgaactatgtaatacttgtttaaactaaataatatgatgtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="108941" stop="109984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109241" g_stop="109684" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E281167" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109241" e_stop="109684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCT</genome_strand>
        <mrna_strand>TTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340842" ref_strand="+" ref_description="SGN-E340842 [cTOF-5-P9]">
      <seq>cgaattgtgtttcaactcgctgctacggagcattgagcatttgctgccgccggctgtatcgctcgccgccgttcaatccttccgaggatagagccaactttggcgaccttgaaaaataggtagcgctgggtgttattttgaagggaaaagataagcattatgagaacaacattagtgagacagaagggtatcaagatttattggaaatattacagtagtctttgccatcccaaggtgaatgagacacgttcttcaacaaacttgcgttcatttagcagctccaacaaattcagcgattactctgatgaatccgctgaatccaactatcctcctcctcctgagcctataccaaataggcccttacgagctgattccaggaggcccttcaatccatcccaaagacagcatccaagcaacagaagcagccccaatcattctacaacttttagaagatccagtgagaacaatgaaagtcaaatgaaatcccaggatagtgaagattttctgaaaagatttcagcttggatttgatcgtaaagaggaaaacccaaacacaaaccccaaagctgaaagtagagactgtcctgtttcagaggcacctncagctccaccagaagatgctgatgagatattcaagaaaatgaaagaaactggcttaatacctaatgctgtagcaatgcttgatgggctctgcagggacgcttggtacaggaagcgatgaagctctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113400" stop="110271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113100" g_stop="113015" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113014" i_stop="111217" i_length="1798">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111216" g_stop="110571" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="731" r_length="645" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E340842" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113100" e_stop="113015"/>
          <exon e_start="111216" e_stop="110571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTGTGTTTCAACTCGCTGCTACGGAGCATTGAGCATTTGCTGCCGCCGGCTGTATCGCTCGCCGCCGTTCAATCCTTCCGAGGTATGTGAACTCGATTTTTCTCTATTTTATGCTTTTATTTCTGAAAAACTGAATTAGATAAACTGATCTGAAGAAGAAGAAGAAGAAATGTGTTCGTTCAGACTGTCTTTGTAATGAGGGAAAACAATGAATTGATTTATTTATTTTTTTGATACCGCACGAAGAAGAAGTATTAATGTGTATTGATAAATTTGTGGTTTTCAGAAGAAGCTAAAATTTGTAGTTTTTTTTTTCTTCTTCTATATTTACCAAATGAATTGGAATTCCTAATTATTTCAATGTTTGAGAATTTGATGTATTTAGTAACTAGGAGAAAATAATTTGCCAGTTTCAAGATTTGTATTATCTTTTGGCTTTTTGAGATACAAGCTAAGTGAACTGAACCATTATTTTGAAATGTTGTATATTTGAAAAAAAAATTTGATATGAGGAGTATTGCTCAGAGAATTAGTCGATTAGTTTTGTACAGTATAGCTCGGAGAATTAGTCGATTCGATTCTTGATAAGCAGAAGTGGTGGTGAACAGTATCTTTTATATGGTACCCTAACATCTACCATCCTCGACTGTTCTCCCTAGGAGTCAATAGTATCACTCTCCGTGTTGCTCTCGTGGTGAGTCGAGCCCCCCAACTTCATAGTTGGAGGTGGAAGGCGTTTTCCGCTTGAGCTAACCCTCTCTTTGTTTAGAAGTGACACACAAAGTGGGACTGAGACAGAAATGTTTAGTGAATGCAATGACTCCCACCCACTCCCCTTTATGTATTGTGGGTGTGGGAATTGCTTCCGGGGAAGAGAGAGGCGGGATGTTTCGACATAAGAGTATGAAGAAGCATATGATAAATATAGAGACTGCTAAATGATTAGGTGATAATTGTTTTTAGTATGACTCCTCTTCTTGGACTTATCTTATATATATACTTCTCTTCTACTTTGGCAATACAAAACAATCAACTCAGACAGTTGAGCGACTAAGATTCTCTATAATTATATTTGCTTAGTTTTGCAAGTCTCACAGACTAAATTTGAAAAACCCGATCAACAAAGTCAAAATTCGTATAGCCAAACAACTGAGCGACTAAAGAGTCCCTTTAGCTATAGTTGCTTAGTTTTGTAAGTCTCATAGGCTGAATTTGATAAACCTGGCCAACAGTGGGTTTAGAAGATCACAAAGAAAGCCCAGTTTAACTCAGCTTCTAGACCTAATTCTCCAAATCTCCTTCTATATATTCTCTCTTTCTTCGTATCAAAAATCCATCTAGGGTTAGCTCCCAATTTTCTACACACTGGGGATTCAGTGGCTGCAATCGCTACTATACTGCCAATCTAGAATTTGCTTCGTTTTGCACTTTGCAATCATATAAGCTTCGCTAAATTCTCAAATTAGTGGTCTTACAGTGTTAGTGCGTATAGGAAAAGCTGAAGTTATCAGCGGCAGCCAGACATCTGTTGAGATGAATCCACAGATGCGTTCTGTTTATGCTCCTGTCTACTAATTTCATCTCACATTTTGTTGCTACTATATCTGTAGTTTTTTTATTTTGATGGTACAATTTTTGAAATTGGGCTGAGTTTTTCAGTACTCGTATAACCCCCAAAGTATCTATATCATCATAGAATAAGCCGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTTGGGATGATTGAAGATTCATCTGTTTAATTTGTGTGGCTACATGAACTTACACAATAAAAAAGTGTGTTAATATGTCTTTGATTGCACTATATGAAAGTCTATTCAACAGGAGTTTTATCTCGTCTGGAATTACAGGATAGAGCCAACTTTGGCGACCTTGAAAAATAGGTAGCGCTGGGTGTTATTTTGAAGGGAAAAGATAAGCATTATGAGAACAACATTAGTGAGACAGAAGGGTATCAAGATTTATTGGAAATATTACAGTAGTCTTTGCCATCCCAAGGTGAATGAGACACGTTCTTCAACAAACTTGCGTTCATTTAGCAGCTCCAACAAATTCAGCGATTACTCTGATGAATCCGCTGAATCCAACTATCCTCCTCCTCCTGAGCCTATACCAAATAGGCCCTTACGAGCTGATTCCAGGAGGCCCTTCAATCCATCCCAAAGACAGCATCCAAGCAACAGAAGCAGCCCCAATCATTCTACAACTTTTAGAAGATCCAGTGAGAACAATGAAAGTCAAATGAAATCCCAGGATAGTGAAGATTTTCTGAAAAGATTTCAGCTTGGATTTGATCGTAAAGAGGAAAACCCAAACACAAACCCCAAAGCTGAAAGTAGAGACTGTCCTGTTTCAGAGGCACCTCCAGCTCCACCAGAAGATGCTGATGAGATATTCAAGAAAATGAAAGAAACTGGCTTAATACCTAATGCTGTAGCAATGCTTGATGGGCTCTGCAAGGACGGCTTGGTACAGGAAGCGATGAAGCTCTTTGGC</genome_strand>
        <mrna_strand>CGAATTGTGTTTCAACTCGCTGCTACGGAGCATTGAGCATTTGCTGCCGCCGGCTGTATCGCTCGCCGCCGTTCAATCCTTCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCCAACTTTGGCGACCTTGAAAAATAGGTAGCGCTGGGTGTTATTTTGAAGGGAAAAGATAAGCATTATGAGAACAACATTAGTGAGACAGAAGGGTATCAAGATTTATTGGAAATATTACAGTAGTCTTTGCCATCCCAAGGTGAATGAGACACGTTCTTCAACAAACTTGCGTTCATTTAGCAGCTCCAACAAATTCAGCGATTACTCTGATGAATCCGCTGAATCCAACTATCCTCCTCCTCCTGAGCCTATACCAAATAGGCCCTTACGAGCTGATTCCAGGAGGCCCTTCAATCCATCCCAAAGACAGCATCCAAGCAACAGAAGCAGCCCCAATCATTCTACAACTTTTAGAAGATCCAGTGAGAACAATGAAAGTCAAATGAAATCCCAGGATAGTGAAGATTTTCTGAAAAGATTTCAGCTTGGATTTGATCGTAAAGAGGAAAACCCAAACACAAACCCCAAAGCTGAAAGTAGAGACTGTCCTGTTTCAGAGGCACCTNCAGCTCCACCAGAAGATGCTGATGAGATATTCAAGAAAATGAAAGAAACTGGCTTAATACCTAATGCTGTAGCAATGCTTGATGGGCTCTGCAGGGAC-GCTTGGTACAGGAAGCGATGAAGCTCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717897" ref_strand="+" ref_description="SGN-E717897 [FC03AC04]">
      <seq>aatcggccgaattgaaaaggagaaaaaaacttcagctttgctcgatttctcggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113724" stop="116874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114026" g_stop="114063" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="52" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115250" i_length="1187">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115251" g_stop="115363" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="165" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="299" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="458" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116574" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="794" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E717897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114026" e_stop="114063"/>
          <exon e_start="115251" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGAAAAAAACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCG</genome_strand>
        <mrna_strand>AAAAGGAGAAAAAAACTTCAGCTTTGCTCGATTTCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746582" ref_strand="+" ref_description="SGN-E746582 [GI|47104168]">
      <seq>aaaaaacttcagctttgctcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagacccaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttccgtactcgtcgatggagtctgttacgacgagtcaagactataactcccatagtagtatatccttaaaacgtaaggttttggttatattcttgctcttgatgtgtttgatttgttctctgcatcgatatttatccaacgagttgtgttatatacgatctgtagttgttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113735" stop="117044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114035" g_stop="114063" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="151" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="285" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="444" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116743" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="949" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="950" polyA_stop="962"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E746582" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114035" e_stop="114063"/>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTATATTCTTGCTCTTGATGTGTTTGATTTGTTCTCTGCATCGATATTTATCCAACGAGTTGTGTTATATACGATCTGTAGTTGTTTTAG</genome_strand>
        <mrna_strand>AAAAAACTTCAGCTTTGCTCGATTTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACCCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTATATTCTTGCTCTTGATGTGTTTGATTTGTTCTCTGCATCGATATTTATCCAACGAGTTGTGTTATATACGATCTGTAGTTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703045" ref_strand="+" ref_description="SGN-E703045 [FA20BF05]">
      <seq>aaaaaacttcagctttgctcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttccgtactcgtcgatggagtctgttacgacgagtcaagactataactcccatagtagtatatccttaaaacgtaaggttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113735" stop="116953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114035" g_stop="114063" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="151" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="285" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="444" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116653" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="859" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E703045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114035" e_stop="114063"/>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGG</genome_strand>
        <mrna_strand>AAAAAACTTCAGCTTTGCTCGATTTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271333" ref_strand="+" ref_description="SGN-E271333 [cLEM-5-A5]">
      <seq>aaaaacttcagctttgctcgatttctcgcatacaccaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggaccatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggaccaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaacctatcggcattgctgtggatcacaggcgccaggaacagatcccttgaaggtctccagaccaacgtccagagacccaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113736" stop="116557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114036" g_stop="114063" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="152" r_length="124" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="287" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="448" r_length="161" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116257" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="467" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E271333" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114036" e_stop="114063"/>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACA-CAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGA-CATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGA-CAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAA-CTATCGGCATTGCTGTGGATCACAGGCG-CAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTG</genome_strand>
        <mrna_strand>AAAAACTTCAGCTTTGCTCGATTTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACACCAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACCATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACCAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACCTATCGGCATTGCTGTGGATCACAGGCGCCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACCCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711747" ref_strand="+" ref_description="SGN-E711747 [FB02DE01]">
      <seq>ccccttaagctttgctcgatttctcgcatacacaggtaaacccccaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaactcgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttccgtactcgtcgatggagtctgttacgacgagtcaagactataactccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113741" stop="116920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114038" g_stop="114063" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="148" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="282" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="441" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116620" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="818" r_length="377" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E711747" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114038" e_stop="114063"/>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCC</genome_strand>
        <mrna_strand>CCCCTTAAGCTTTGCTCGATTTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACACAGGTAAACCCCCAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTCGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCAC--A-G--ATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210914" ref_strand="+" ref_description="SGN-E210914 [cLEC-69-I2]">
      <seq>aaacttcagctttgctcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctangttgaagagagcagctgaagctgagaanggagagaagaaataagacttttctaatgtcttatagcccttgcacactagcatttgctaattttttttgcacgagtctaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113738" stop="116830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114038" g_stop="114063" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="148" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="282" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="441" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116530" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="733" r_length="292" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E210914" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114038" e_stop="114063"/>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGAT</genome_strand>
        <mrna_strand>AAACTTCAGCTTTGCTCGATTTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTANGTTGAAGAGAGCAGCTGAAGCTGAGAANGGAGAGAAGAAATAAGACTTTTCTAATGTCTTATAGCCCTTGCACACTAGCATTTGCTAATTTTTTTTGCACGAGTCTAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305681" ref_strand="+" ref_description="SGN-E305681 [cLEX-14-L20]">
      <seq>aacttcagctttgctcgatttctcggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113739" stop="116658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114039" g_stop="114063" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115250" i_length="1187">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115251" g_stop="115363" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="138" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="272" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="432" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116358" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="552" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E305681" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114039" e_stop="114063"/>
          <exon e_start="115251" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCA</genome_strand>
        <mrna_strand>AACTTCAGCTTTGCTCGATTTCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323168" ref_strand="+" ref_description="SGN-E323168 [cTOB-28-N14]">
      <seq>acttcagctttgctcgatttctcggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcacacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgatgagagcagctgaagctgacaaggaagagagcaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattctttttgcacgagtctagatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113740" stop="116832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114040" g_stop="114063" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115250" i_length="1187">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115251" g_stop="115363" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="137" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="271" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="431" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116532" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="724" r_length="293" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E323168" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114040" e_stop="114063"/>
          <exon e_start="115251" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGA</genome_strand>
        <mrna_strand>ACTTCAGCTTTGCTCGATTTCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCACACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGATGAGAGCAGCTGAAGCTGACAAGGAAGAG-AGCAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTCTTTTTGCACGAGTCTAGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321718" ref_strand="+" ref_description="SGN-E321718 [cTOB-25-O13]">
      <seq>acttcagctttgctcgatttctcggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113740" stop="116715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114040" g_stop="114063" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115250" i_length="1187">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115251" g_stop="115363" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="137" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="271" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="431" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116415" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="608" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E321718" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114040" e_stop="114063"/>
          <exon e_start="115251" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCT</genome_strand>
        <mrna_strand>ACTTCAGCTTTGCTCGATTTCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556238" ref_strand="+" ref_description="SGN-E556238 [cTSD-2-N19]">
      <seq>ttcagctttgctcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcaggtaatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="113742" stop="116870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114042" g_stop="114063" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="144" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="278" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="437" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116239" g_stop="116570" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="769" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E556238" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114042" e_stop="114063"/>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTTTGCTCGATTTCTCGGTGAGTTTCAGATAGATTTGCTAATGTTTTGATACATTATCGTTTAATTTTGCTTATAGAATTGTTAGTGTAGTTTGAATTTGCTTTCTAATGAGCTTATTGTTATCAAAATGAGTGAATAATTGTGGTTTTCCGGTAGTTTGTTTGGTGTTTTCTGGATTTGAGGCCGGAAATGGTGAGCGGAAGTGTTGAGAGGGTTCTGAGAAACTGTAAAATGAATTTTTTGGTATATTTTGATTGATATGTTGTTTATTGTTTTTGTTTATTTAGGAGTTAGTGTTTTTGCTTAGATGATGATGATTGATTAGTTTAGATTGTTATGGATATAGTTAGATGGAATTTCAGTTAGTGAACCATTGACTGAGTTCGTAATTTCAATTCCGGAGGTGATAGGTGTCCAGTGTGAAAGCTGGACCGGACACCACTGTTGTTGAACACTATCAATTTGGGTTCAATTGGAGAATGATGGCAGGGTGGTGTGGTGGAATGCACTTGTAAATATGAGAGTTGCTTTTGCCTATGTTAGTTTATGTTTTGTTTGGCCTATCTAGTTGGACTGCCTATTTTACTAAGATGTGTTCGTTCTGATCCTCTCAAGACATCCACCTATTTATGTGATTACGCTTTCATTTTGCTCCAGGAATGATATCTTCTATTCATATTGATAGTGTTTGTATGGTGTGGTATTCTGTCGTATTGATGTATGGGTAGATAAATGAAGGTGTTAAATACTGTTTATCTTTGTTTGTGTTTTTGGTTCGGTAAAATTGGTATTCAGTGTCTTGGAAGTTAATGAATGTGCAACTTTAGCATAAATGCTCAGGGACTACTGCTACCCCGGTGTCCTTTGAACTTCTTTGTATTTCATTTTGATAAAATCACAAAATTGAGCTTATTCTTGAAACTTTTCATGCTGTTTGAATCGTAACTACTAGATACTTCTTGTTTTTTATTTTAGTATAAGTTCTTAAAATGCTTACCATATTATTCCTGTGTTATTTCTTGTTTTTAAATCATAATGTTTACATATGCTTTCTCAAATTGCTTTTTGAATTTCATAGACCTACTACTTTAATTGAAAAACTATGTTCCATTGCATGTTGATTGGTGCTTTGTTATCCTCGTCATATATTTCCTTAGGTGTTTCCAACTCTTAGTACCTTAATTCCTTGTGTCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTT</genome_strand>
        <mrna_strand>TTCAGCTTTGCTCGATTTCTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCAGGTAATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283466" ref_strand="+" ref_description="SGN-E283466 [cLER-12-D10]">
      <seq>tcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114938" stop="116715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115238" g_stop="115363" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="259" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="419" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116415" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="596" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E283466" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115238" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCT</genome_strand>
        <mrna_strand>TC-GCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464750" ref_strand="+" ref_description="SGN-E464750 [cPRO-18-P20]">
      <seq>cgcttgcttactctccaaaccaggtaaaccatgaagcataacaatgttatccccaatggtcactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcaaaagaaagctgcaacaatcttccctaggccaacagcgggatcactccgacctattgttcatgggcaaacactaaaatacaacatgaaagttagagctggcaggggattctctctggaagagttgaaagcagctggtatcccaaaaaaacttgctccaactataggcattgccgtggatcacaggcgcagaaacagatccctcgaaggtctccaaaccaatgtccagaggctcaagacatacaaagccaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggtccttacttgcctattgttagagatcagccagctgtcgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttgaaatgtcttatagccttgcgcactagcattgctaattttttttgcacgagtctgaatgatgaattatttttactgttatttcaagaattttacttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114938" stop="116851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="136" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="270" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="429" r_length="159" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116575" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="759" r_length="330" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E464750" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGT</genome_strand>
        <mrna_strand>CAAAC-CAGGTAAACCATGAAGCATAACAATGTTATCCCCAATGGTCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAAAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCGGGATCACTCCGACCTATTGTTCATGGGCAAACACTAAAATACAACATGAAAGTTAGAGCTGGCAGGGGATTCTCTCTGGAAGAGTTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCAAAAAAACTTGCTCCAACTATAGGCATTGCCGTGGATCACAGGCGCAGAAACAGATCCCTCGAAGGTCTCCAAACCAATGTCCAGAGGCTCAAGACATACAAAGCCAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTGTCGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTGAAATGTCTTATAG-CCTTGCGCACTAGCATTGCT-AATTTTTTTTGCACGAGTCTGAATGATGAATTA-TTTT---TACTGTTATTTCAAG-AATTTTACTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464087" ref_strand="+" ref_description="SGN-E464087 [cPRO-16-P2]">
      <seq>taagcttcgcttgcttactctccaaaccaggtaaaccatgaagcataacaatgttatccccaacggtcactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctggcaaaagaaagctgcaacaatcttccctaggccaacagcgggatcactccgacctattgttcatgggcaaacactaaaatacaacatgaaagttagagctggcaggggattctctctggaagagttgaaagcagctggtatccccaaaaaacttgctccaactataggcattgccgtggatcacaggcgcaggaacagatccctagaaggtctccaaaccaatgtccagaggctcaagacatacaaagccaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggtccttacttgcctattgttagagagcagccagctattgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttgaaatgtcttatagccttgcgcactagcattgctaattttttttgcacgagtctgaatgatgaaatatttttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114938" stop="116846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="143" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115469" i_length="106">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115470" g_stop="115599" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="273" r_length="130" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="432" r_length="159" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116547" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="738" r_length="306" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E464087" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115470" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTAC</genome_strand>
        <mrna_strand>CAAAC-CAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGTCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG..........................................................................................................GCAAAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCGGGATCACTCCGACCTATTGTTCATGGGCAAACACTAAAATACAACATGAAAGTTAGAGCTGGCAGGGGATTCTCTCTGGAAGAGTTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATAGGCATTGCCGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAAACCAATGTCCAGAGGCTCAAGACATACAAAGCCAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATTGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTGAAATGTCTTATAG-CCTTGCGCACTAGCATTGCT-AATTTTTTTTGCACGAGTCTGAATGATGAAATATTTTT-ACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451885" ref_strand="+" ref_description="SGN-E451885 [cSTS-14-L18]">
      <seq>ttaagcttcgcttgcttactctccaaaccaggtaaaccatgaagcataacaatgttatccccaatggtcactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcaaaagaaagctgcaacaatcttccctaggccaacagcgggatcactccgacctattgttcatgggcaaacactaaaatacaacatgaaagttagagctggcaggggattctctctggaagagttgaaagcagctggtatcccaaaaaaacttgctccaactataggcattgccgtggatcacaggcgcagaaacagatccctcgaaggtctccaaaccaatgtccagaggctcaagacatacaaagccaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggtccttacttgcctattgttagagatcagccagctgtcgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttgaaatgtcttatagccttgcgcactagcattgctaattttttttgcacgagtctgaatgatgaattatttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114938" stop="116845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="144" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="278" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="437" r_length="159" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116541" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="738" r_length="301" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E451885" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTT</genome_strand>
        <mrna_strand>CAAAC-CAGGTAAACCATGAAGCATAACAATGTTATCCCCAATGGTCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAAAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCGGGATCACTCCGACCTATTGTTCATGGGCAAACACTAAAATACAACATGAAAGTTAGAGCTGGCAGGGGATTCTCTCTGGAAGAGTTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCAAAAAAACTTGCTCCAACTATAGGCATTGCCGTGGATCACAGGCGCAGAAACAGATCCCTCGAAGGTCTCCAAACCAATGTCCAGAGGCTCAAGACATACAAAGCCAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTGTCGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTGAAATGTCTTATAG-CCTTGCGCACTAGCATTGCT-AATTTTTTTTGCACGAGTCTGAATGATGAATTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407817" ref_strand="+" ref_description="SGN-E407817 [PPI-8-L7]">
      <seq>tcgggctttgcttgctttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgcgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatccctagaaggtctccagaccaatgtccagaggctcaagacatacaaagctaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggttcttacttgcctattgttagagagcagccagctatcgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaggttgaagagagcagctgaagctgaaaaggaagagaagaaaatagacatttgaaatgtctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114918" stop="116778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="144" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="278" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="437" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116478" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="677" r_length="240" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E407817" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTA</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAGACCAATGTCCAGAGGCTCAAGACATACAAAGCTAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTTCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATCGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAGGTTGAAGAGAGCAGCTGAAGCTGAAAAGGAAGAGAAGAAAATAGACATTTGAAATGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453764" ref_strand="+" ref_description="SGN-E453764 [cSTS-21-G3]">
      <seq>gttttcagttagatttgcactacacaggtaaaccacgaagcacaacaatgttatccccaacggccaccttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgcgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagaagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatccctagaaggtctccagaccaatgtccagaggctcaagacatacaaagctaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggttcttacttgcctattgttagagagcagccagctatcgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaaggttgaagagagcagctgaagctganaaggaagagaagaaataagacatttgaaatgtcttaatagttctagccttgcgcactagcattgctaattttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114929" stop="116788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="140" r_length="121" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="275" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="435" r_length="160" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116477" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="675" r_length="240" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E453764" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAG-AGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTG-CTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTT</genome_strand>
        <mrna_strand>C-TACACAGGTAAACCACGAAGCACAACAATGTTATCCCCAACGGCCACCTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAGACCAATGTCCAGAGGCTCAAGACATACAAAGCTAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTTCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATCGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAAGGTTGAAGAGAGCAGCTGAAGCTGANAAGGAAGAGAAGAAATAAGACATTTGAAATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405718" ref_strand="+" ref_description="SGN-E405718 [PPI-1-K20]">
      <seq>cttcgcttgcttactctccaaaccaggtaaaccatgaagcataacaatgttatccccaacggtcactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctggtgagtttcctacttttttgatggctttaaatctcaaattcaacttgggctcaagaatacttacactgactgacctgtttttcttttgccaactccagctaggcaaaagaaagctgcaacaatcttccctaggccaacagcgggatcactccgacctattgttcatgggcaaacactaaaatacaacatgaaagttagagctggcaggggattctctctggaagagttgaaagcagctggtatccccaaaaaaacttgctccaactataggcattgccgtggatcacaggcgcaggaacagatccctagaaggtctccaaaccaatgtccagaggctcaagacatacaaagccaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggtccttacttgcctattgttagagagcagccagctattgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcnagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114938" stop="116719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115599" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="371" r_length="353" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="531" r_length="160" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116239" g_stop="116419" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="712" r_length="181" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E405718" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGT</genome_strand>
        <mrna_strand>CAAAC-CAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGTCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTT-CCTACTTTTT--T-GATGGCTTTAAATCTCAAATTCAACTTGGGCTCAAGAATACTTACACTGACTGACCTGTTTTTCTTTTGCCAACTCCAGCTAGGCAAAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCGGGATCACTCCGACCTATTGTTCATGGGCAAACACTAAAATACAACATGAAAGTTAGAGCTGGCAGGGGATTCTCTCTGGAAGAGTTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATAGGCATTGCCGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAAACCAATGTCCAGAGGCTCAAGACATACAAAGCCAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATTGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCNAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302519" ref_strand="+" ref_description="SGN-E302519 [cLEX-1-E3]">
      <seq>agctttgctcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114933" stop="116715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="141" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="275" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="434" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116415" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="611" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E302519" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCT</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416298" ref_strand="+" ref_description="SGN-E416298 [STM-22-H24]">
      <seq>cgggctttgcttgctttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgcgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatccctagaaggtctccagaccaatgtccagaggctcaagacatacaaagctaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggttcttacttgcctattgttagagagcagccagctatcgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114923" stop="116713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="143" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="277" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="436" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116414" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="612" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E416298" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGC</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAGACCAATGTCCAGAGGCTCAAGACATACAAAGCTAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTTCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATCGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454087" ref_strand="+" ref_description="SGN-E454087 [cSTS-22-I9]">
      <seq>cttaagcttcgcttgcttactctccaaaccaggtaaaccatgaagcataacaatgttatccccaacggtcactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcaaaagaaagctgcaacaatcttccctaggccaacagcgggatcactccgacctattgttcatgggcaaacactaaaatacaacatgaaagttagagctggcaggggattctctctggaagagttgaaagcagctggtatccccaaaaaaacttgctccaactataggcattgccgtggatcacaggcgcaggaacagatccctagaaggtctccaaaccaatgtccagaggctcaagacatacaaagccaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggtccttacttgcctattgttagagagcagccagctattgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114938" stop="116699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="145" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="279" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="439" r_length="160" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116399" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="600" r_length="161" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E454087" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGC</genome_strand>
        <mrna_strand>CAAAC-CAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGTCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAAAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCGGGATCACTCCGACCTATTGTTCATGGGCAAACACTAAAATACAACATGAAAGTTAGAGCTGGCAGGGGATTCTCTCTGGAAGAGTTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATAGGCATTGCCGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAAACCAATGTCCAGAGGCTCAAGACATACAAAGCCAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATTGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287809" ref_strand="+" ref_description="SGN-E287809 [cLES-19-D19]">
      <seq>tttgctcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114933" stop="116690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="138" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="272" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="431" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116390" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="583" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E287809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCG</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437483" ref_strand="+" ref_description="SGN-E437483 [cSTA-3-N12]">
      <seq>cgcttgcttactctccaaaccaggtaaaccatgaagcataacaatgttatccccaacggtcactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcaaaagaaagctgcaacaatcttccctaggccaacagcgggatcactccgacctattgttcatgggcaaacactaaaatacaacatgaaagttagagctggcaggggattctctctggaagagttgaaagcagctggtatccccaaaaaaacttgctccaactataggcattgccgtggatcacaggcgcaggaacagatccctagaaggtctccaaaccaatgtccagaggctcaagacatacaaagccaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggtccttacttgcctattgttagagagcagccagctattgagcttgtgaaggtcacagatgaaatgaaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114938" stop="116659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="136" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="270" r_length="134" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="430" r_length="160" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116359" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="551" r_length="121" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E437483" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCAT</genome_strand>
        <mrna_strand>CAAAC-CAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGTCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAAAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCGGGATCACTCCGACCTATTGTTCATGGGCAAACACTAAAATACAACATGAAAGTTAGAGCTGGCAGGGGATTCTCTCTGGAAGAGTTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATAGGCATTGCCGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAAACCAATGTCCAGAGGCTCAAGACATACAAAGCCAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATTGAGCTTGTGAAGGTCACAGATGAAATGAAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266437" ref_strand="+" ref_description="SGN-E266437 [cLEI-3-B24]">
      <seq>gctttgctctatttctcgcatacacaggtgaaccatgaggcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcacacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcaactggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacacgcgcatgaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatattcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaagaacttgctaatgccaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114929" stop="116578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="140" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="274" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="433" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116278" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="473" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E266437" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCC</genome_strand>
        <mrna_strand>CATACACAGGTGAACCATGAGGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCACACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAACTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACACGCGCATGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATATTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAAGAACTTGCTAATGCCACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441215" ref_strand="+" ref_description="SGN-E441215 [cSTA-29-L5]">
      <seq>ttcgggctttgcttgctttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgcgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatccctagaaggtctccagaccaatgtccagaggctcaagacatacaaagctaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114917" stop="116576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="145" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="279" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="439" r_length="160" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116277" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="478" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E441215" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACC</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAGACCAATGTCCAGAGGCTCAAGACATACAAAGCTAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200462" ref_strand="+" ref_description="SGN-E200462 [cLEB-8-J23]">
      <seq>gcacgagtcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaactagctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114933" stop="116398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="140" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="274" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116098" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="393" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E200462" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGC</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTAGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275835" ref_strand="+" ref_description="SGN-E275835 [cLEN-18-P1]">
      <seq>aaaacttcatcttttttcgatttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaaaaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114933" stop="116356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="149" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="283" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116056" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="360" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E275835" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGA</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAAAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438598" ref_strand="+" ref_description="SGN-E438598 [cSTA-8-H16]">
      <seq>cgggctttgcttgctttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgcgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114923" stop="116353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="143" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="277" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116054" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="352" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E438598" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTT</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437999" ref_strand="+" ref_description="SGN-E437999 [cSTA-5-F18]">
      <seq>cgggctttgcttgctttctcgcatacacaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgcgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114923" stop="116353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115363" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="143" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="277" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116053" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="351" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E437999" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCT</genome_strand>
        <mrna_strand>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322147" ref_strand="+" ref_description="SGN-E322147 [cTOB-24-E4]">
      <seq>acaggtaaaccatgaagcataacaatgttatccccaacggccactttaagaagcattggcaaaactatgtgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114947" stop="116425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115247" g_stop="115363" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="251" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116125" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="397" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E322147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115247" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGC</genome_strand>
        <mrna_strand>ACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437309" ref_strand="+" ref_description="SGN-E437309 [cSTA-3-I12]">
      <seq>gtaaaccatgaagccataaccaatgttatccccaacggccactttaagaagcattggcaaaacctatgtaaggaccatggtttaaccaacctgctcgcaaaacaaggagaccccgcctgctaggcagaagaaagctgcaaccaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacacctaaaataccaaccatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaaccagatcccctagaaggtctccagaccaatgtccagaggctcaagacatacaaagctaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggttcttacttgcctattgttagagagcagccagctatcgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114951" stop="116676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115251" g_stop="115363" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.81"/>
            <acceptor a_prob="0.741" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="257" r_length="138" r_score="0.925"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="418" r_length="161" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116376" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="556" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E437309" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115251" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCATGAAG-CATAA-CAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAA-CTATGTGAGGA-CATGGTTTAACCAACCTGCTCGCAAAACAAGGAGA-CGTG-CTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAA-CAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACA-CTAAAATA-CAA-CATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAA-CAGAT-CCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAG</genome_strand>
        <mrna_strand>GTAAACCATGAAGCCATAACCAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACCTATGTAAGGACCATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACCCCGCCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACCAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACCTAAAATACCAACCATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACCAGATCCCCTAGAAGGTCTCCAGACCAATGTCCAGAGGCTCAAGACATACAAAGCTAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTTCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATCGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279057" ref_strand="-" ref_description="SGN-E279057 [cLEL-4-M17](-)">
      <seq>gcacgagaaaccatgaagcatatcaatgttatccccaacggccactttaagaagcattggcaaaactatgtgacgacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="114946" stop="116572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115251" g_stop="115363" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="118" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="252" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="411" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116272" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="445" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E279057" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279057" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115251" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATG</genome_strand>
        <mrna_strand>G-AAACCATGAAGCATATCAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGACGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471720" ref_strand="+" ref_description="SGN-E471720 [cSTB-25-C2]">
      <seq>gcaaaactatgtaaggacatggtttaaccaacctgctcgcaaaacaaggagacgcgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115005" stop="116353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115305" g_stop="115363" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="193" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116053" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="268" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E471720" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115305" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCT</genome_strand>
        <mrna_strand>GCAAAACTATGTAAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373459" ref_strand="+" ref_description="SGN-E373459 [TUS-31-N4]">
      <seq>tgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115016" stop="116872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115316" g_stop="115363" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="182" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="342" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116572" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="676" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E373459" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115316" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTC</genome_strand>
        <mrna_strand>TGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292199" ref_strand="+" ref_description="SGN-E292199 [cLET-1-H17]">
      <seq>tgaggacatggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115016" stop="116858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115316" g_stop="115363" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="182" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="342" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116558" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="662" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E292199" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115316" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCAT</genome_strand>
        <mrna_strand>TGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618861" ref_strand="-" ref_description="SGN-E618861 [69544]">
      <seq>tggtttaaccaacctgctcgcaaaacaaggagacgcgttgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacgacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactattggcattgctgtggatcacaggcgcaggaacagatccctagaaggtctccagaccaatgtccagaggctcaagacatacaaagctaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtcgagggtccttacttgcctattgttagagagcagccagctattgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttgaaatgtcttatagccttgcgcactagcattgctaattttttttgcacgagtctgaatgatgaattatttttactgttatttcaagaattttactttttttcgtacttgttgatggagtctgttatgaagagtcaagactataactcccatagtagtatatccttaaagcgtaaggttttggttacctcgtgccgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115024" stop="116965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115324" g_stop="115363" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.95"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="174" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="333" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116655" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="746" r_length="413" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E618861" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115324" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTT--TTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTT</genome_strand>
        <mrna_strand>TGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGCGTTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACGACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATTGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAGACCAATGTCCAGAGGCTCAAGACATACAAAGCTAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCGAGGGTCCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATTGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTGAAATGTCTTATAG-CCTTGCGCACTAGCATTGCT-AATTTTTTTTGCACGAGTCTGAATGATGAATTA-TTTT---TACTGTTATTTCAAGAATTTTACTTTTTTTCGTACTTGTTGATGGAGTCTGTTATGAAGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAGCGTAAGGTTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713367" ref_strand="+" ref_description="SGN-E713367 [FB08BG07]">
      <seq>ggtttaaccaacctgctcgcaaaacaaggagacgtgctgctaggcagaagaaagctgcaacaatcttccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttccgtactcgtcgatggagtctgttacgacgagtcaagactataactcccatagtagtatatccttaaaacgtaaggttttggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115025" stop="116956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115325" g_stop="115363" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="173" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="332" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116656" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="750" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E713367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115325" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTA</genome_strand>
        <mrna_strand>GGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416299" ref_strand="-" ref_description="SGN-E416299 [STM-22-H24]">
      <seq>acgcgctgctaggcagaagaaagctgcaacaatcttccntaggccaacagcaggatcactccgacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggcaggggattctctctagaagagctgaaagcagctggtatccccaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatccctagaaggtctccagaccaatgtccagaggctcaagacatacaaagctaagctagttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccactcaagtccagggttcttacttgcctattgttagagagcagccagctatcgagcttgtgaaggtcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcatgttggtgtgaggttgaagagagcagctgaagctgaaaaggaagagaagaaataagacatttgaaatgtcttataagttatagccttgcgcactagcattgctaattttttttgcacgagtctgaatgatgaattatttttactattatttcaagaattttactttttttcgtacttgttgatggagtctgttatgaagagtcaagactataactccccatagtagtatatccttgaagcgtaaggttttggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115159" stop="116958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115356" g_stop="115363" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.741" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115599" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="142" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="301" r_length="159" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.578" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116239" g_stop="116655" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="722" r_length="421" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="735"/>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E416299" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416299" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115356" e_stop="115363"/>
          <exon e_start="115466" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTAT-AG-----CCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTT--TTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACT-CCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTT</genome_strand>
        <mrna_strand>ACGCGCTG......................................................................................................CTAGGCAGAAGAAAGCTGCAACAATCTTCCNTAGGCCAACAGCAGGATCACTCCGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCAGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTAGAAGGTCTCCAGACCAATGTCCAGAGGCTCAAGACATACAAAGCTAAGCTAGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACTCAAGTCCAGGGTTCTTACTTGCCTATTGTTAGAGAGCAGCCAGCTATCGAGCTTGTGAAGGTCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATGTTGGTGTGAGGTTGAAGAGAGCAGCTGAAGCTGAAAAGGAAGAGAAGAAATAAGACATTTGAAATGTCTTATAAGTTATAGCCTTGCGCACTAGCATTGCT-AATTTTTTTTGCACGAGTCTGAATGATGAATTA-TTTT---TACTATTATTTCAAGAATTTTACTTTTTTTCGTACTTGTTGATGGAGTCTGTTATGAAGAGTCAAGACTATAACTCCCCATAGTAGTATATCCTTGAAGCGTAAGGTTTTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373458" ref_strand="+" ref_description="SGN-E373458 [TUS-31-N4](-)">
      <seq>aagctgcaacaatctcccctaggccaacagcaggatcactcagacctattgttcatggacaaacactaaaatacaacatgaaagtcagagctggccggggattctctctagaagagctgaaagcagctggtatccccaaaaaaacttgctccaactatcggcattgctgtggatcacaggcgcaggaacagatcccttgaaggtctccagaccaacgtccagagactcaagacatacaaagctaagctcgttatcttcccaaggcatgctaagaaagtcaaggctggtgattctagtgctgaggaacttgctaatgccacccaagtccagggtccttacttgcctattgttagagatcagccagctatcgagcttgtgaagatcacagatgaaatgaaatcattcaaagcttatggcaagctgcgtattgagcgtaccaatgctcgtcattttggtgctaggttgaagagagcagctgaagctgagaaggaagagaagaaataagacatttctaatgtcttatagcccttgcacactagcattgctaaattttttttgcacgagtctaaatgatgaattatttttgagtactattatttcatgtaatttttttttccgtactcgtcgatggagtctgttacgacgagtcaagactataactcccatagtagtatatccttaaaacgtaaggttttggttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="115178" stop="116958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115478" g_stop="115599" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115980" g_stop="116138" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="282" r_length="160" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.578" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116239" g_stop="116655" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="699" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E373458" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115478" e_stop="115599"/>
          <exon e_start="115980" e_stop="116138"/>
          <exon e_start="116239" e_stop="116655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAAGTAAATTTTTCTGTCTAATCTTGCTCTAGATTGTCGTAAAAAGCAACCACCTACTAGACACGTTTGGCTCAATTGAGATTCGTTCCCCTGTTGGGATCTATGTTTGACGCTGAGCTTGTATTAGAGTTTGGCATTTTGAGCTTATATAGAGTTTGGTTCTTGCGCAAGCAAGTTCACATGCCAAAAGCCATTTTGAGCAGGGCAGACTCCATTTTACACCTCTATCTAAGTTGCAACTATAGAATTTGAAGTTGATCACATCATTATCTTTTTATCTTTTAGATATGATCTGCCAAAATATAAAGCCCTCCTTACCATGTACTTGTATCTAGAGATTCAAGTATATCAATCAGCTTCTTTTTTTTTGTTTTTGTTTTCAGGCAGCTGGTATCCCC-AAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAGGTAAGCAGTCATGATATGACAATTGAACAACTTTTTGTTTGCTTATTGGTATTTTGATGTAGCGTCTTTGAACTTACATCTTCCCAACACAAATGCACAGGCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTT</genome_strand>
        <mrna_strand>AAGCTGCAACAATCTCCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTATCCCCAAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG....................................................................................................GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591114" ref_strand="-" ref_description="SGN-E591114 [44819]">
      <seq>ggagacagaggctcagaattcatacacagtgatataagtgctaagggtcagccagagcctactggatggttaatgtcaagtttcctggaattggggtttgatgattggcacgtcggtgttttatgcttaataggaaactgtatgtgcatggcagcatacttagccattcaggctccagttttggcaaaataccctgcaagtatatcagtgacagcatattcatacctttttggttgtcttttaatggtagcaacagccttctttgtgaccgatgagtcaaccgactggaacttgacacaatctgaagcttttgctgtgtgctatgctggaattgttgcatctgccctgaactacggaatgttgacatggtgcaataagattcttggcccttctatggttgcactatacaatccacttcaacctgctgcgtctgcatttctatcaagagttttccttgggagccctatttatctaggaagcatatttggaggacttctcattatatctgggctttacttggtaacttgggcatcttacagacaaaggcaagcagccattggcattgatcctcatgcttctcgatcgtcggatcctccaattacatatcaactaggacaccttttttcagttcctccttcctcaataccaaagattattgattaggtagtgctgtggatattcatattgaagtgactactttatcaagcttttttcctgcactagtcaggaagcatacagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="120175" stop="116939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119875" g_stop="119705" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119704" i_stop="118536" i_length="1169">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118535" g_stop="118380" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="327" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118379" i_stop="117860" i_length="520">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117859" g_stop="117708" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="479" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117707" i_stop="117465" i_length="243">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117464" g_stop="117201" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="742" r_length="263" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E591114" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="119875" e_stop="119705"/>
          <exon e_start="118535" e_stop="118380"/>
          <exon e_start="117859" e_stop="117708"/>
          <exon e_start="117464" e_stop="117201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATTGGCACCTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAGGTAATTTGATAATCTTTTTGCTTTCATTGATTTCAATTTACTTGAGGAGAACCAGATTACTGTTCAGTAACTAAACTGAAAGGCTGCACCCAGATATCTAAATACTAAGATATACAACGTGATGGCTGCAAACCTTAGAGACTAGGTTCAACTTTCAGCAGAGTAATAAACGCTAGGCGAATTCTTTCTATCACCTAAGCCTTTGTGGGAGAGTTATCTAGTACCTTTGCTGATGGGAAGTAGTAGGTACTTGATAAGGTATACGCGAGTTGGCCCAAACACAATCACTGTAAAAAAAAGTTTATTGCGCCAATTGATCAATTCCTCAAATGACATGCTGCTAAATGTTAATTGACATATTTTTATTGGGTACATATGCTTGTTCCTAAGATTGACAGTCTGAAACTCAATGAGACAACCTAGCAAGGGAATGAAAGGAGACTTGCCTCAAAATGGAAATGCAAAAATTGATTCCATACATCAATAGAATCGTGAACCTTTGGATGTTCAGAGAGTTTAACTGTAAGAATAAATGGAAAAGTAAAACTTGATTGGTCTTGTTGAGTTATTTTTCAACTTGACCCTCACTATTGACTGTGATGCTAATGGATGAAATATTATTTGTTCATTTTTCTCTGTAAAGTTGTTCAATTGATCCATCAAGGATAGCAGGGGTATAAGTGCCAACAAACTGGCAGGGGGGAGCAGCATGGAAAGCGAGGCTCCACACCCTTCTCCGTGGGCTTTAGGAATCGAAAAGCTCTTAGTCCATAATTCTAATGCCCCAATCATGTCCTCTGACCACATGTTATCACTCTTTTTGTTAAATTCTTTTCCTTGGATCCATTAATTTCTACTGATCAGATCGAAAAATTACTTGAAACCTTCAAGTTTGATTTTAGGCCTTTTTTTTATTATATGAAATGATTCCAAGTGTCAAAGTGTTTGATTATTAGGTGATTTTATAAGAAATGATTTCCTTACTAAAAAACATAACAGCCTATATTTTTCTTGGTGAACGATGTTCTTTTTTGGGATATAGTTGGCAATTTAGATTTTGGCATGTCTTGAACCATTGTCTAAAACATCCTTGACTTTTCCAAATAAACCGTTTCTGTTTGTATTGTTTGGGAATATTCTAACTTGACTGAATTTTAAGAAATTTTCAGGCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGTTGCCTTTTAATGGTAGCAACAGCCTTCTTTGTGACCGATGAGTCAACCGACTGGAACTTGACACAATCTGAAGCTTTTGCTGTGTGCTATGCTGTAAGATTCTCATCCTCCGTCTTTATAGTTCCTGTTCTGTTACGAGTTCTCATTACTATGTATGTTATGGAGTAAGCAAATTCTTCTCCACATGAATAAGTATTCTACTCATGACATCAGTTGCGATTTTTTTCAACTTGAAGCTTAGCTCCTTCATCTCTTACAAGGGGAAAAGATGCCTTGAACTACAGTCTATAAGATGTGCATACAATGCGTTCCTGACAGCATACATCAAGTTTACCTCAGACATTTTAATGCGCTTCATGCTTTTCTTCCCTGGTGTTGCTCTCTAGATTACCAATCATCATCGACTACCTAGCCATGCCAATTAGTGATAGGGATGACAGCTAAACCATGACTACTATGAACGCCAAAGTATCTACTTGAGCTTTATGTGTAATGTTTCATTACGGATTCTCTTCTCTAGCTATGTTTCACGTTAGTTTTGGGAAACAAGATATAATCTTTTAGTTAGCGGCGAAATCAAAGTAGTCAAGTTACCATCATTTCTATTTTTCAGGGAATTGTTGCATCTGCCCTGAACTACGGAATGTTGACATGGTGCAATAAGATTCTTGGCCCTTCTATGGTTGCGCTATACAATCCACTTCAACCTGCTGCGTCTGCATTTCTATCAAGAGTTTTCCTTGGGAGCCCTATTTATCTAGGAAGGTCAGTGCTTAACTTCCCCTATAAGCAAAACTTGTGTATATATACCAATGCTTATTATCATTTCCTCGTTGTCATGCTTCACGATTTTGGACACAACGGGGCCTACAAAGGCGAAAGAGTTTTGAAAGCTCTTTCCCCCGGAAAATGAGCATACTCATATCCGTTTATACTAGCCACATTTGGCTATCTCATACAATCTTTTCGCCTTCTACTCTTACGATCTCATGAATATTGTCAATGCAGCATATTTGGAGGACTTCTCATTATATCTGGGCTTTACTTGGTAACTTGGGCATCTTACAGACAAAGGCAAGCAGCCATTGGTATCGATCCTCATGCTTCTCGATCGTCGGAACCTCCAATTACATATCAACTAGGACACCTTTTTTCAGTTCCTCCTTCCTCAATACCAAAGATCATTGATTAGGTAGTGCTGTGGATATTCATATTGAAGTGACAATTTTATCAAAACTTTTTTCCTGTATTAGTTAGGAGGCATACAGAAAC</genome_strand>
        <mrna_strand>GGAGACAGAGGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCCTGGAATTGGGGTTTGATGATTGGCACGTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACAGCATATTCATACCTTTTTGGTTGTCTTTTAATGGTAGCAACAGCCTTCTTTGTGACCGATGAGTCAACCGACTGGAACTTGACACAATCTGAAGCTTTTGCTGTGTGCTATGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTGTTGCATCTGCCCTGAACTACGGAATGTTGACATGGTGCAATAAGATTCTTGGCCCTTCTATGGTTGCACTATACAATCCACTTCAACCTGCTGCGTCTGCATTTCTATCAAGAGTTTTCCTTGGGAGCCCTATTTATCTAGGAAG...................................................................................................................................................................................................................................................CATATTTGGAGGACTTCTCATTATATCTGGGCTTTACTTGGTAACTTGGGCATCTTACAGACAAAGGCAAGCAGCCATTGGCATTGATCCTCATGCTTCTCGATCGTCGGATCCTCCAATTACATATCAACTAGGACACCTTTTTTCAGTTCCTCCTTCCTCAATACCAAAGATTATTGATTAGGTAGTGCTGTGGATATTCATATTGAAGTGACTACTTTATC-AAGCTTTTTTCCTGCACTAGTCAGGAAGCATACAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327660" ref_strand="+" ref_description="SGN-E327660 [cTOC-20-J22]">
      <seq>gggtggattgtgatgaaatgataaaaatggcagctgtatcagtgggaaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtggataccatgtgattacaaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatccttcttctttctaggattaactggtatttttgggaaccaacttttgtttcttattggtcttggttacacaaatccaacatatgctgcagccgtgcaacctgcaataccagtcttcacattcatatttgcagtattgatgggtacagaaacagtgaagctttttactgtggaaggtcaagcaaaggttggaggtacgattgtttgtgtttctggggcaatcttaatggccatcttccgtggacctgtggtgtttggagacagaagctcagaattcatacacagtgatataagtgctaagggtcagccagagcctactggatggttaatgtcaagtttcgtggaattgggttttgatgatggccacctcggtgttttatgcttaatangaaactgtatgtgcatggcagcatacttagctattcaggctccagttttggcaaataccctgcaagtatatcagtgacggcatattcatacctttttggntgccttttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="123149" stop="118161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122849" g_stop="122624" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122623" i_stop="121393" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121392" g_stop="121330" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="289" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121329" i_stop="121216" i_length="114">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121215" g_stop="121099" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="406" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121098" i_stop="119988" i_length="1111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119987" g_stop="119705" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="689" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119704" i_stop="118536" i_length="1169">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118535" g_stop="118461" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="763" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E327660" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122849" e_stop="122624"/>
          <exon e_start="121392" e_stop="121330"/>
          <exon e_start="121215" e_stop="121099"/>
          <exon e_start="119987" e_stop="119705"/>
          <exon e_start="118535" e_stop="118461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGGGTAAGTAAGAAATCAACCCCCTTTGTCTTCGATTCTGTCTTTGTATCTGTTTCTCTTTCAAGATATATTCATGTACATTTCTGTACTCAATTGGGAGATTACTTTGCATAGGGTGAAAAGATAGCAGTTCAGTCATACCATTGTTTTCTTTGAGAAAACCTGAAATTGCCTGCGCCTAATTGATTTAGTAGTTCCTACAATGTGAATCAGGATTTCCATCACTATGATACTCCATATCTTCCAAATGTGCAGTGGTGAAGTTAAAACTTCTATTATATGTATTATTTTGGTCATCGACAAATCTGCATTCAGGGTGAAATAATGTTTTGGGTGTTTAGATGAAGTTCCATTATTATAGAACAGTATTGCAGTCGAAGTAATATAAGTGAACCAGTTCAGTAATATCAATATAACCCTTAGATACAGGGAGACTTTACCGAGAAATATGAACATTATTGTTGAGGGTTACTAAAATCTTTAGTTATCAACTGGTTCTTGAAAAGAAAGGAAGCTATGCACATTTTATAACTATCTACATTTTCCACAAGAAGAATTGGGGTCAATCACAAACAAATTATTTGGGGGGTACTTTTTGAAGATATAAGAGAGGACCTGCTAAATTTTTGTCTTTGTTGCTATTCCTATTTTATTTTGATAATCGTGGTGTCTAGGCCAGCTAGCATGCACCTCGAGTAATTCCATGGGATACTATTACCTCCCAGCAACAACTACCAGGTAACTCTATCCACTAAGGCTTAGGTTGATGGGGAGAAATCATCTAGTGATTTTGTTTCCGCTGGTGAACCTGAGACCTCGTACTTCTCCCACTTCATCTACCACCAGACGCACCCTTGGGTGCTATTGCTATTGGCCTGTTTAGTTATGACATTTTTCAGGTCTATAATTTTATTTTAGTAATAAAAGCAGGGCAAGATTGACACTCTTGCTACTTATACAATAGGTTCTTTTTTTCTTTTTCTCTGCTAGGCTTTCTTGTGCCTTAAACTACCAATCTGCCTTCTTTTTGTGTATTTTTCATGTATTTGCACATTCTGTAGTTTGTTGTAGTTGATGATCTGCTCAACTTTACTCTTAAATGTTACTTATGCAGTACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATTGGCACCTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAGGTAATTTGATAATCTTTTTGCTTTCATTGATTTCAATTTACTTGAGGAGAACCAGATTACTGTTCAGTAACTAAACTGAAAGGCTGCACCCAGATATCTAAATACTAAGATATACAACGTGATGGCTGCAAACCTTAGAGACTAGGTTCAACTTTCAGCAGAGTAATAAACGCTAGGCGAATTCTTTCTATCACCTAAGCCTTTGTGGGAGAGTTATCTAGTACCTTTGCTGATGGGAAGTAGTAGGTACTTGATAAGGTATACGCGAGTTGGCCCAAACACAATCACTGTAAAAAAAAGTTTATTGCGCCAATTGATCAATTCCTCAAATGACATGCTGCTAAATGTTAATTGACATATTTTTATTGGGTACATATGCTTGTTCCTAAGATTGACAGTCTGAAACTCAATGAGACAACCTAGCAAGGGAATGAAAGGAGACTTGCCTCAAAATGGAAATGCAAAAATTGATTCCATACATCAATAGAATCGTGAACCTTTGGATGTTCAGAGAGTTTAACTGTAAGAATAAATGGAAAAGTAAAACTTGATTGGTCTTGTTGAGTTATTTTTCAACTTGACCCTCACTATTGACTGTGATGCTAATGGATGAAATATTATTTGTTCATTTTTCTCTGTAAAGTTGTTCAATTGATCCATCAAGGATAGCAGGGGTATAAGTGCCAACAAACTGGCAGGGGGGAGCAGCATGGAAAGCGAGGCTCCACACCCTTCTCCGTGGGCTTTAGGAATCGAAAAGCTCTTAGTCCATAATTCTAATGCCCCAATCATGTCCTCTGACCACATGTTATCACTCTTTTTGTTAAATTCTTTTCCTTGGATCCATTAATTTCTACTGATCAGATCGAAAAATTACTTGAAACCTTCAAGTTTGATTTTAGGCCTTTTTTTTATTATATGAAATGATTCCAAGTGTCAAAGTGTTTGATTATTAGGTGATTTTATAAGAAATGATTTCCTTACTAAAAAACATAACAGCCTATATTTTTCTTGGTGAACGATGTTCTTTTTTGGGATATAGTTGGCAATTTAGATTTTGGCATGTCTTGAACCATTGTCTAAAACATCCTTGACTTTTCCAAATAAACCGTTTCTGTTTGTATTGTTTGGGAATATTCTAACTTGACTGAATTTTAAGAAATTTTCAGGCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGTTGCCTTTTAATG</genome_strand>
        <mrna_strand>GGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG..................................................................................................................TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATGGCCACCTCGGTGTTTTATGCTTAATANGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGTTTTGGC-AAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGNTGCCTTTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708565" ref_strand="+" ref_description="SGN-E708565 [FA36AE03]">
      <seq>atttggatgtaggtcacttcaattcgttgaaatctcagctaaattcttgattttgaaccaattagcgaaaaccccaattcatgaaaacaactaggtgactgaaattttctgttaaaaatcatactttctgttcattctatagcttaattatcaagaatcttgaaaccccatctcaccaaccatcactattttccaccgattttatcatcacagtcgtttaggggtataaaggggtggtgggggtggggtggattgtgatgaaatgataaaaatggcagctgtatcagtgggaaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtggataccatgtgattacaaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatccttcttctttctaggattaactggtatttttgggaaccaacttttgtttcttattggtcttggttacacaaatccaacatatgctgcagccgtgcaacctgcaataccagtcttcacattcatatttgcagtattgatgggtacagaaacagtgaagctttttactgtggaaggtcaagcaaaggttggaggtacgattgtttgtgtttctggggcaatcttaatggccatcttccgtggacctgtggtgtttggagacagaagctcagaattcatacacagtgatataagtgctaagggtcagccagagcctactggatggttaatgtcaagtttcgtggaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="123394" stop="119482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123094" g_stop="122624" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122623" i_stop="121393" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121392" g_stop="121330" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="534" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121329" i_stop="121216" i_length="114">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121215" g_stop="121099" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="651" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121098" i_stop="119988" i_length="1111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119987" g_stop="119782" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="857" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E708565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123094" e_stop="122624"/>
          <exon e_start="121392" e_stop="121330"/>
          <exon e_start="121215" e_stop="121099"/>
          <exon e_start="119987" e_stop="119782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGGGTAAGTAAGAAATCAACCCCCTTTGTCTTCGATTCTGTCTTTGTATCTGTTTCTCTTTCAAGATATATTCATGTACATTTCTGTACTCAATTGGGAGATTACTTTGCATAGGGTGAAAAGATAGCAGTTCAGTCATACCATTGTTTTCTTTGAGAAAACCTGAAATTGCCTGCGCCTAATTGATTTAGTAGTTCCTACAATGTGAATCAGGATTTCCATCACTATGATACTCCATATCTTCCAAATGTGCAGTGGTGAAGTTAAAACTTCTATTATATGTATTATTTTGGTCATCGACAAATCTGCATTCAGGGTGAAATAATGTTTTGGGTGTTTAGATGAAGTTCCATTATTATAGAACAGTATTGCAGTCGAAGTAATATAAGTGAACCAGTTCAGTAATATCAATATAACCCTTAGATACAGGGAGACTTTACCGAGAAATATGAACATTATTGTTGAGGGTTACTAAAATCTTTAGTTATCAACTGGTTCTTGAAAAGAAAGGAAGCTATGCACATTTTATAACTATCTACATTTTCCACAAGAAGAATTGGGGTCAATCACAAACAAATTATTTGGGGGGTACTTTTTGAAGATATAAGAGAGGACCTGCTAAATTTTTGTCTTTGTTGCTATTCCTATTTTATTTTGATAATCGTGGTGTCTAGGCCAGCTAGCATGCACCTCGAGTAATTCCATGGGATACTATTACCTCCCAGCAACAACTACCAGGTAACTCTATCCACTAAGGCTTAGGTTGATGGGGAGAAATCATCTAGTGATTTTGTTTCCGCTGGTGAACCTGAGACCTCGTACTTCTCCCACTTCATCTACCACCAGACGCACCCTTGGGTGCTATTGCTATTGGCCTGTTTAGTTATGACATTTTTCAGGTCTATAATTTTATTTTAGTAATAAAAGCAGGGCAAGATTGACACTCTTGCTACTTATACAATAGGTTCTTTTTTTCTTTTTCTCTGCTAGGCTTTCTTGTGCCTTAAACTACCAATCTGCCTTCTTTTTGTGTATTTTTCATGTATTTGCACATTCTGTAGTTTGTTGTAGTTGATGATCTGCTCAACTTTACTCTTAAATGTTACTTATGCAGTACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGG</genome_strand>
        <mrna_strand>ATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG..................................................................................................................TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345812" ref_strand="+" ref_description="SGN-E345812 [cTOF-18-P15]">
      <seq>gcttcaattcgttgaaatctcaagcttaaattcttgattttgaaccaattagcgaaaaccccaattcaatggaaaaccaaacctaggtgactgaaattttctgttaaaaatcatacctttctgttcattctatagcttaattatcaagaatcttgaaaccccatctcaccaaccatcactattttccaccgattttatcatcacagtcgtttaggggtaaaaggggtggtgggggtggggtgtggatatgggatgaaatgataaaaatggcagctgtatcagtgggaaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtggataccatgtgattacaaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatccttcttctttctaggattaactggtatttttgggaaccaacttttgtttcttattggtcttggttacacaaatccaacatatgctgcagccgtgcaacctgcaataccagtcttcacattcatatttgcagtattgatgggtacagaaacagtgaagctttttactgtggaaggtcaagcaaaggttggaggtacgattggtttgtgtttctggggcaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="123378" stop="119606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123079" g_stop="122624" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122623" i_stop="121393" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121392" g_stop="121330" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="529" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121329" i_stop="121216" i_length="114">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.370" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121215" g_stop="121099" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="646" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121098" i_stop="119988" i_length="1111">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119987" g_stop="119906" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="729" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E345812" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123079" e_stop="122624"/>
          <exon e_start="121392" e_stop="121330"/>
          <exon e_start="121215" e_stop="121099"/>
          <exon e_start="119987" e_stop="119906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCAATTCGTTGAAATCTC-AGC-TAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTC-AT-GAAAA-C-AA-CTAGGTGACTGAAATTTTCTGTTAAAAATCATA-CTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGT-GGG-GTGGAT-TGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGGGTAAGTAAGAAATCAACCCCCTTTGTCTTCGATTCTGTCTTTGTATCTGTTTCTCTTTCAAGATATATTCATGTACATTTCTGTACTCAATTGGGAGATTACTTTGCATAGGGTGAAAAGATAGCAGTTCAGTCATACCATTGTTTTCTTTGAGAAAACCTGAAATTGCCTGCGCCTAATTGATTTAGTAGTTCCTACAATGTGAATCAGGATTTCCATCACTATGATACTCCATATCTTCCAAATGTGCAGTGGTGAAGTTAAAACTTCTATTATATGTATTATTTTGGTCATCGACAAATCTGCATTCAGGGTGAAATAATGTTTTGGGTGTTTAGATGAAGTTCCATTATTATAGAACAGTATTGCAGTCGAAGTAATATAAGTGAACCAGTTCAGTAATATCAATATAACCCTTAGATACAGGGAGACTTTACCGAGAAATATGAACATTATTGTTGAGGGTTACTAAAATCTTTAGTTATCAACTGGTTCTTGAAAAGAAAGGAAGCTATGCACATTTTATAACTATCTACATTTTCCACAAGAAGAATTGGGGTCAATCACAAACAAATTATTTGGGGGGTACTTTTTGAAGATATAAGAGAGGACCTGCTAAATTTTTGTCTTTGTTGCTATTCCTATTTTATTTTGATAATCGTGGTGTCTAGGCCAGCTAGCATGCACCTCGAGTAATTCCATGGGATACTATTACCTCCCAGCAACAACTACCAGGTAACTCTATCCACTAAGGCTTAGGTTGATGGGGAGAAATCATCTAGTGATTTTGTTTCCGCTGGTGAACCTGAGACCTCGTACTTCTCCCACTTCATCTACCACCAGACGCACCCTTGGGTGCTATTGCTATTGGCCTGTTTAGTTATGACATTTTTCAGGTCTATAATTTTATTTTAGTAATAAAAGCAGGGCAAGATTGACACTCTTGCTACTTATACAATAGGTTCTTTTTTTCTTTTTCTCTGCTAGGCTTTCTTGTGCCTTAAACTACCAATCTGCCTTCTTTTTGTGTATTTTTCATGTATTTGCACATTCTGTAGTTTGTTGTAGTTGATGATCTGCTCAACTTTACTCTTAAATGTTACTTATGCAGTACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATT-GTTTGTGTTTCTGGGGCAATCTTA</genome_strand>
        <mrna_strand>GCTTCAATTCGTTGAAATCTCAAGCTTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCAATGGAAAACCAAACCTAGGTGACTGAAATTTTCTGTTAAAAATCATACCTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTA-AAAGGGGTGGTGGGGGTGGGGTGTGGATATGGGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG..................................................................................................................TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGGTTTGTGTTTCTGGGGCAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440836" ref_strand="+" ref_description="SGN-E440836 [cSTA-27-O9]">
      <seq>tttagatttatagaaaaaaatggctaaagactcaaactttactcaaagatcgatgcagatttggatgtgggtcactccaatttgttgaaatctcagttaaattcttgattttgaaccaaatagcaaaaaccccaattcatgaaaacaacgtggtgactgaaaatttctgtaaaaattcacactttctggtcagtctgtagctttattatcaagaatcttgaaaccccatcacaccaaccatcactatttttcaccaattccatcatcacaatcgtgtaggggtataaaggggtggtgggggtggggtggattgggatgaaatgataaaaatggcagctgtatcagtggggaatgggaatgaggtatggagagctcatggaacaatggcgatgatacagcttttgtatggtgggtaccatgtgattaccaaagtggcactcaatgtgggaatgaatcaaattgtgttctgtttgtatagggatcttcttgctctatctattcttgcaccagttgcctatgttcgcgaaaagaggtcgaggattcctttgaataggcggcttctgctatcattcttctttctaggattaactggtatttttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="123443" stop="121021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123157" g_stop="122624" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122623" i_stop="121393" i_length="1231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121392" g_stop="121330" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="592" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121329" i_stop="121216" i_length="114">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.370" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121215" g_stop="121205" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="603" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E440836" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123157" e_stop="122624"/>
          <exon e_start="121392" e_stop="121330"/>
          <exon e_start="121215" e_stop="121205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTTATAGAAGAAAAAAAAAAGGCTAAAGACTCAAACTTTACTCAAAGATCGATGCAGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAAGTTAGTTCTTTTTTTTTCCCCTTTATGTTGCTTTTGAATCTATAATCTTACCATGTATCTGTTTATGAATAGATAGATTTAGTTTTATACTGTGGTGTTTGGGGTCAGCTTGTGATTACTGATCCACTGAGCCTGCTTATAGGTACAAGCTATGTTGCTCGAACTCTTCCTCCGAAAATCCACTGCTTTTGGTGTGTTTTGGAGGATCCGACATGAAACTTGTGAAGTTGTCTTTTGTTTGGGTAAATCTGTCTACCAAGTTTTAGAGCAAATGAACTTACACTAATTGTTGTAGCTAGGATTAGGAGCTGGGATCCCAAAATGTTTAAGCTTGTGCCTGAACTGCTCAGGCATCGTTTTGAGGACATAGATTTACTTTTCTGATTGAGCCAGGGTATATTTGTTAAAGAGATCTGCACTGAATTATTTGTAAGAAGAATGGACTGAGAGATGCATTTCTGAAAAATAGACGTTGCTATGGTTAATTAATGTTGAGTCCGTTCTACATATTAAGTTAGAAATTCTAGATTTACTGAAATTTGTTTGCTACAATGTCTAATAGTATGTGCTTGTGAGAGTCTGGTCAATTGTTTGAGCTTGTTTACCTCATTTCAACCTGTATTTGCATCTTGAGCTGTTGTAGTTGAAGTGATTTTACATTTTTAAAAGTTTGGTTTGTTAATACTTAAATCTTTCATAAATTATTATGTTGTCTTCATGATGGGGTAATATTCTTTCTGTTTCTAATTGATACTTGGTAATCCACTATGATTACACCTCAAATTGTTCTGCTGTTCTCCGATTTGGAGGTTTGAAAACGATTCCTCATAAAAAGTAAGGACTTGCTTATCTTGTTGTGTGAGTTGGATACAAAGAAAAGCTTTTAGATTTAGTAAAATGGAATTACAATACCAATTTAAGAGCAAGATTAAAGGCGTCTATCCATACGTTCTCAAACTTCAGATACAAATACATGTGCATTCTCAAACTTCACATAAGAATTCTTTGTTGATATTCTGACTAGTAGCTTGAAATTGTCACTCATGTCTCTGGCTTTTACTCTTTCTTAGTTGTTACCTTGTATCCTTGTTCGTACATTTTTCCTTAAACCTCTACTTGAAAGGTTTTGGGCTAAACGTATGCATCTAAACTATTGTCTTACTTTTGGAAACTCTTTGAAAAATAGTTTTCAGTATCTGAACTAATAATGTTGCCTTTCCTTTATGTCTAGGAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGGGTAAGTTTGATGTGCCTGCTATTTCTGTGGTTAACTTGCATAGTTCTTACACTGAACTAAAACTGTTCCTTTTTTTTTTAAATGTTTTTTCGTTTTTCTTGGCAACTGCAACAGTATTTTTGGGA</genome_strand>
        <mrna_strand>TTTAGATTTAT--A-GAAA--AAAATGGCTAAAGACTCAAACTTTACTCAAAGATCGATGCAGATTTGGATGTGGGTCACTCCAATTTGTTGAAATCTCAGTTAAATTCTTGATTTTGAACCAAATAGCAAAAACCCCAATTCATGAAAACAACGTGGTGACTGAAAATTTCTGTAAAAATTCACACTTTCTGGTCAGTCTGTAGCTTTATTATCAAGAATCTTGAAACCCCATCACACCAACCATCACTATTTTTCACCAATTCCATCATCACAATCGTGTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGGGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGGAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGGTACCATGTGATTACCAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCATTCTTCTTTCTAGGATTAACTGG..................................................................................................................TATTTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279834" ref_strand="+" ref_description="SGN-E279834 [cLER-8-H3]">
      <seq>agatttggatgtaggtcacttcaattcgttgaaatctcagctaaattcttgattttgaaccaattagcgaaaaccccaattcatgaaaacaactaggtgactgaaattttctgttaaaaatcatactttctgttcattctatagcttaattatcaagaatcttgaaaccccatctcaccaaccatcactattttccaccgattttatcatcacagtcgtttaggggtataaaggggtggtgggggtggggtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="123396" stop="122541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123096" g_stop="122841" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E279834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123096" e_stop="122841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATT</genome_strand>
        <mrna_strand>AGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544608" ref_strand="+" ref_description="SGN-E544608 [TUS-67-A12](-)">
      <seq>ggaagaaattgcaggaacaaggcagacgaatttgaaaactgcattgagctttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctgctgctacagacattgtcaataagatacgaactgggaatcagaagtacaatacgaacaacaatattggcttccataattgatactggcctcgtctgatgcatcctatccgcccttagtcctgcgtctactcgagaagatggattaaactagagactatcagaacttccatttcaatgtgcctgtgaaatctaaagtaaattagttgcatttgctttcaatttcaagcaagtaaacaaggttgtttatttcttgttcacttaaaatgcttgtatatgacatttgtatgtcattaattaaagcactagaataagtgaaaggactactagtttcatctcttttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="128492" stop="123833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128192" g_stop="128105" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128104" i_stop="127994" i_length="111">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127993" g_stop="127925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="157" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127924" i_stop="127624" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127623" g_stop="127594" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="187" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127593" i_stop="126541" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126540" g_stop="126508" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="220" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126507" i_stop="125701" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125700" g_stop="125630" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="291" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125629" i_stop="124881" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124880" g_stop="124799" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="373" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124798" i_stop="124686" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124685" g_stop="124587" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="472" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124586" i_stop="124454" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124453" g_stop="124132" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="794" r_length="322" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E544608" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128192" e_stop="128105"/>
          <exon e_start="127993" e_stop="127925"/>
          <exon e_start="127623" e_stop="127594"/>
          <exon e_start="126540" e_stop="126508"/>
          <exon e_start="125700" e_stop="125630"/>
          <exon e_start="124880" e_stop="124799"/>
          <exon e_start="124685" e_stop="124587"/>
          <exon e_start="124453" e_stop="124132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGC-TTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAGGTACTACTACAAAGCTTCTTACTAACTATTTCATTCGTGTAATCGTAACACAAATCTCTCAGCTTAAAGTAATCTCTTCGTCTTTCTCCGTGGATCCCTGCTGAAAACAGTTGTTTACCTGCAATTTCTTCAGATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATACAT</genome_strand>
        <mrna_strand>GGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCA-TTGAGCTTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG.............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG.....................................................................................................................................ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544609" ref_strand="+" ref_description="SGN-E544609 [TUS-67-A12]">
      <seq>aatctttttcaaaaaataacctaattttttcaatctcccgccattgctgaagaaatggagaaaacgaaggaagaaattgcaggaacaaggcagacgaatttgaaaactgcatttgagcttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctgctgctacagacattgtcaataagatacgaactgggaatcagaagtacaatacgaacaacaatattggcttccataattgatactggcctcgtctgatgcatcctatccgcccttagtcctgcgtctactcgagaagatggattaaactagagactatcagaacttccatttcaatgtgcctgtgaaatctaaagtaaattagttgcatttgctttcatttncagcaagtaaacaagggtgtttatttcttggtcacttaaatgcttgtatatgacatttgtatgtcattaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="128560" stop="123881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128260" g_stop="128105" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128104" i_stop="127994" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127993" g_stop="127925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="225" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127924" i_stop="127624" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127623" g_stop="127594" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="255" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127593" i_stop="126541" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126540" g_stop="126508" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="288" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126507" i_stop="125701" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125700" g_stop="125630" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="359" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125629" i_stop="124881" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124880" g_stop="124799" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="441" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124798" i_stop="124686" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124685" g_stop="124587" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124586" i_stop="124454" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124453" g_stop="124181" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="811" r_length="271" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E544609" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128260" e_stop="128105"/>
          <exon e_start="127993" e_stop="127925"/>
          <exon e_start="127623" e_stop="127594"/>
          <exon e_start="126540" e_stop="126508"/>
          <exon e_start="125700" e_stop="125630"/>
          <exon e_start="124880" e_stop="124799"/>
          <exon e_start="124685" e_stop="124587"/>
          <exon e_start="124453" e_stop="124181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAGGTACTACTACAAAGCTTCTTACTAACTATTTCATTCGTGTAATCGTAACACAAATCTCTCAGCTTAAAGTAATCTCTTCGTCTTTCTCCGTGGATCCCTGCTGAAAACAGTTGTTTACCTGCAATTTCTTCAGATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTA</genome_strand>
        <mrna_strand>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG.............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG.....................................................................................................................................ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTC-ATTTNCAGCAAGTAAACAAGGGTGTTTATTTCTTGGTCACTT-AAATGCTTGTATATGACATTTGTATGTCATTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305941" ref_strand="+" ref_description="SGN-E305941 [cLEY-17-A4]">
      <seq>atctttttcaaaaaataacctaattttttcaatctcccgccattgctgaagaaatggagaaaacgaaggaagaaattgcaggaacaaggcagacgaatttgaaaactgcatttgagcttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctgctgctacagacattgtcaataagatacgaactgggaatcagaagtacaatacgaacaacaatattggcttccataattgatactggcctcgtctgatgcatcctatccgcccttagtcctgcgtctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="128559" stop="124048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128259" g_stop="128105" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128104" i_stop="127994" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127993" g_stop="127925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="224" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127924" i_stop="127624" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127623" g_stop="127594" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="254" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127593" i_stop="126541" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126540" g_stop="126508" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="287" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126507" i_stop="125701" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125700" g_stop="125630" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="358" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125629" i_stop="124881" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124880" g_stop="124799" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="440" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124798" i_stop="124686" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124685" g_stop="124587" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="539" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="124586" i_stop="124454" i_length="133">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="124453" g_stop="124348" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="645" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E305941" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128259" e_stop="128105"/>
          <exon e_start="127993" e_stop="127925"/>
          <exon e_start="127623" e_stop="127594"/>
          <exon e_start="126540" e_stop="126508"/>
          <exon e_start="125700" e_stop="125630"/>
          <exon e_start="124880" e_stop="124799"/>
          <exon e_start="124685" e_stop="124587"/>
          <exon e_start="124453" e_stop="124348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAGGTACTACTACAAAGCTTCTTACTAACTATTTCATTCGTGTAATCGTAACACAAATCTCTCAGCTTAAAGTAATCTCTTCGTCTTTCTCCGTGGATCCCTGCTGAAAACAGTTGTTTACCTGCAATTTCTTCAGATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACT</genome_strand>
        <mrna_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG.............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG.....................................................................................................................................ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251068" ref_strand="+" ref_description="SGN-E251068 [cLEG-17-A4]">
      <seq>atctttttcaaaaaataacctaattttttcaatctcccgccattgttgaagaaatggagaaaacgaaggaagaaattgcaggaacaaggcagacgaatttgaaaactgcatttgagcttggaattcactctttgttaacttcatgttctaaagagggattttgtaaagctttccctaattttgctccagcagaagttgaacgccttcatcggttgttcattcaggtgattacttctttgcatgaggatatagaggatgaatttgagtctttatgtgtggagacacaggcaggatcaactctcaacatggtggagcagcttgtggaagaacaaaacttggaccctttgtttccagagaaaagcaatgttgaagaagtcaggcacttcctatcagaagcaaaacagaatgagatcaactacttgacgactatgttggagacggcagaagaacagaaacgctccatcacttctcgtcttgaaaccctgaagaaacaaagacatgatttctctgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="-" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="128559" stop="124310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128259" g_stop="128105" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128104" i_stop="127994" i_length="111">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127993" g_stop="127925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="224" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127924" i_stop="127624" i_length="301">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127623" g_stop="127594" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="254" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="127593" i_stop="126541" i_length="1053">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126540" g_stop="126508" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="287" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126507" i_stop="125701" i_length="807">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="125700" g_stop="125630" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="358" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="125629" i_stop="124881" i_length="749">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124880" g_stop="124799" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="440" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="124798" i_stop="124686" i_length="113">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="124685" g_stop="124610" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="516" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="-" ref_id="SGN-E251068" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128259" e_stop="128105"/>
          <exon e_start="127993" e_stop="127925"/>
          <exon e_start="127623" e_stop="127594"/>
          <exon e_start="126540" e_stop="126508"/>
          <exon e_start="125700" e_stop="125630"/>
          <exon e_start="124880" e_stop="124799"/>
          <exon e_start="124685" e_stop="124610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAGGTACAATTTTTTTTAATTTTTTTTGAAAAATACAGATTTATAGATTGTATAAACCCTAAAAAGCAGCTCTTTGATTGCTTATCTTCCTTTTTTTTTCCGAATTAATTGAAGGGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAGGTTAGCCTTTTGTTTGTTTTTGAAAAAATTCTAACGGATTTGAAATTTGAGAAATTCGGAGTATTTGATCGGGAACTGCGTTTAAAGAAATTGCAATTTTTTTTAAAAAAAAAACTCAAAGGATTTGGGAATTAGGTTTGGAGAAATTGCGATTTTTTAGTTTTCTAAGGGGTTTAGGATTTGAGAAATTGGAATGTTTAATTGGAAATTAGAGCTTGGAGAAATTGTGATTTGTTTTATTTTTAAGCTTAGTTCTAGATATGTAGCATTTTAACTAGTTTAAAATTTATATTTTTTCCAGGTGATTACTTCTTTGCATGAGGATATAGAGGTATGCTGTTAGTACAATTTTAATGTTCTTTTCGTTCTAGATGAAATTTAATGTATGGAAGTATGGTATTGTTATTTCAGAGAGTGAAGGTTTTAGTAAAAAAAAAGTTCTTTTCTTTACAAGAACGTCGTTTTTTTGTGATTAATGTTGAGCTTGTTTAATCGGTGGTTTCAGTGCATATTCCCAAACTCAAGCATCTTTGCTTTTATTCTCCTTATTTAGTAGCATTAGTTAGTATTTGTGTAGTATCCTATTCTTCAATTTTACTACTGTGTGTTGCTTCTTTTGCTTTGTCCATCTTGTTGTTTTGTTGCTATTATTTTCTTTTCAGTCTTGCTTTGATTTCACTTCTTTTGAGCTGAGGGTCTATCAGAGACAACCTTTCTACCTTACAATGGTATGGGTAATGTCCGTGTACATCATACCCTCCCAAGAGGCCACTTGTGAGATTACGTTGGGTAAGTTGTTGTTGTTGCAAATGTGATGTCTGTCCGATATCAGGTGTTTCTATTTCATGAGAAGCCCAACTGCTGGTCAGATTTTACTCCTGAATAAACAGTGGACTGTGATTGATGCTTCTGGTCGGACTCAATATCAGTTAGAACTTAGAAGTTACACAAATAACCAAGGCCATATCCTTCTTACTCTTTCTTTCTTTCTTTCTTTTTGTTTCATGTGCTATCCCCTCTCCATTAAGAGTAATTAGAAGAATTATACTTTACTTCATTTCTTGTATTCTGGTTGGAACTTCTAATTTAAGTCTTCATTTCTTCACAACATGGCTAAGAGGTCATCTGGATAATAGTTCTCGTTTCTGGAAAGATAATACATCTAGAGTGTCACCCAATTAATTTTATTTGTTGACCTGAATATAACTTTATTTTTGCTATGGCTATGGTGATATTTAAATGTATTATTCCATGCTTGCTAGTGAACTTATAGAATTTTAATGAGTTTCTCATTTCAAATTGATCAGATATATTAGTTGTTAGATTTTATTATTCTCTCCTTTTAGGGCATTATTAAAAGTGTTGTCTATTTCAAATGTTGCAGGATGAATTTGAGTCTTTATGTGTGGAGACACAGGTACATATCATATGCTTCTTAGTTTATTGAAGTTATTATAAGAAAAGATGCACTCCTGTTAGATTTTCGTCACATCCATATTTTTAAGGTCAGTAGAACAACCAAGATTTGCAAAAGTTGCACCTTTGGTCTATGAGAACTGCCAAGTGCTTACTGGTCTTCAGTTGAACGCTGCACTAAAATTTTCAGCATGTGGACGTTTTGACCAAGATATAAGTTGTTATTGCACTTGCTCTTCTTCTGGACCAACTCTGAAGAGAGTAAAGCATTGCTGAGGATCCTATGTTGTGGATAAGAGAAGCTCTTGCAAAATATTGAGAATTTCAGATAAATCTTTGTTTTCATATGGATTAAGTGTAGGCTAACCTCCAGATTAGAAGTTCATTTACTGTGATTACTTAGAACAAAAGTTCCATGCATTGGAAACTGTTTGGAGGGGTCTGGCTTGAAAACCTACTTTTTATTGGAGAAGAGATTCATAAGAGAGAAGGTAATAATTAAGCTATATGAGAAATTTTAAGGATGGACCAAAAATATCCATTTAAATTGTTTGGTTCCGATCTGTGTTTGTTTTATTATGTTCTTATAAGAGCACACACAAATCAATGTTATAGAAAGAGATGCCAACAAGTTAATTATGTTCACACTTCTGCTGCTGTGAGACTGATTAATTTTATTTGGAAAAAGTGCATCTGTTAATACCATTTCTTTTGATATGAAACTGGAAAACTTATGTGAGTTCTGGTTGTTAAGTTGAAATAGTGTCTTTGATATGGTTTTCCTTGGGATCATATTTTTTACTTGTAGGCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAAGTATGCTTACTCCAGTCAGATAAATTGCATAGCCAGGATTAAAATGGTTTTCTTTACCACTCAATTGTTTTGGCAAAAGCTTTCTGGAATTCCATTATTTTCTGCCTTGGTCGCATTGCGTGTAGGAAATTTATTTTTATCAAGACTTCTATTTTGTCAAGTAACCACCACCATCATCCTGGTGAATCAGTTTAACTGAAAGAATGTCGATGGTTATCAAGGCTTCTATTTTGTTAAGTATTAATAGGTTCTCTTTAGGTCTTATGTCTTCCATGCTTGTAGAAAACATAGAGAAGTATCTAGTCCTTCCTATTTTTATTTTGTATCGCATTTGTCAGAATGAGCTTAACTGGAGCGCCATGGTTAGTGAGGATTCATATAGCTTGAGCCCAATTTGCATGCTTGTAGAAAATATAGATAAGTATCTAGTACTTCCTATTTTTATTTTGTATAGCATTTGTCCTAAATGAGCTTAATTGGAGCGCCATGGTTAGTAAGGATTCATATAGCTTGAATCCAATTTGTTTAGGATTTGAGGTTCAGTGTACATAGAAATGTCACTGCCTAGTCTATGAGAAGTACTTTGGCAGGATATTATTTTAATCTGAACATATATCCTTCTATTCAAGGATGAGGTATTTCATAACCTCGAAGCTCGATAGAAATTTTCATGATAGAGAAAGCTACAAATTCATGGTTTAAGACTTCCTGATCTTGTTTCTATTAAGTAATATCCAGTAAATTTGCAGAAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACGGTAATCTCTTGTTATTTCGTGCAATCCTTTCATAAACGAAGAGCTTATACATTAAGAGACATGCATATAATTTCTTAGACTGATTGGTTGACATCCTAAAAACGATTTGTTAGGCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTG</genome_strand>
        <mrna_strand>ATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGTTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG...............................................................................................................GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG.............................................................................................................................................................................................................................................................................................................GTGATTACTTCTTTGCATGAGGATATAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAATTTGAGTCTTTATGTGTGGAGACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG.................................................................................................................GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212685" ref_strand="+" ref_description="SGN-E212685 [cLEC-73-G10]">
      <seq>aaaagaaaaaaatgttagactgacattttttgtcttctatttttagtagtgtagtagtgtttcaatatccaattttcaacaagcaaatcagtgtagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcgtcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142886" stop="144969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143186" g_stop="143317" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="466" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144669" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="499" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E212685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143186" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACC</genome_strand>
        <mrna_strand>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCGTCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723238" ref_strand="+" ref_description="SGN-E723238 [FC19DE12]">
      <seq>ggtcttctatttttcgtagtgtagtagtgtttcaatatccaattttcaacaagcaaatcagtgtagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcaccctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatcccttcagtccaggaagtttaggaatagctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142917" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143216" g_stop="143317" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="436" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="653" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144930" g_stop="145093" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="817" r_length="164" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E723238" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143216" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="145093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</genome_strand>
        <mrna_strand>GGTCTTCTATTTTTCGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCACCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCCTTCAGTCCAGGAAGTTTAGGAATAGCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702936" ref_strand="+" ref_description="SGN-E702936 [FA20AD12]">
      <seq>atttttagtagtgtagtagtgtttcaatatccaattttcaacaagcaaatcagtgtagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttangaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142924" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143224" g_stop="143317" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="428" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="645" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144930" g_stop="145173" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="889" r_length="244" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E702936" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143224" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="145173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATC</genome_strand>
        <mrna_strand>ATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTANGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573550" ref_strand="+" ref_description="SGN-E573550 [32878]">
      <seq>gttctgtagaaatggcactatccctcccaaatctgtttccaaaaggtgatgcttatgggacaaagtattttgagattaaaacaaagccaagtcaattgaagctttcttttagctatagagcaagagcaaatgcagctcttaattctcgttcgagttctgttgaaatccctcgtcagtggtataatctagttgcagaccttccaatcaaaccccctccgtcgttgcatcccaagacatttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcgtcgagcagtttattgatataccagaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggagaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagcccggcagggtcacacaagcccaactctgttgttcctcaagcctggtacaataaaatggggaatgttcacaaatgtggtcacggagactggggcaggtcaatgggggagcgcgttgtcactttgcttgcagcttatttggtctcaattgtgcagtatggcaagttcgagctccgtttgatcacgaaaacttatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142977" stop="145271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143273" g_stop="143317" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="0.89"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="379" r_length="334" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="598" r_length="219" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144930" g_stop="144971" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="641" r_length="43" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E573550" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143273" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="144971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTT-AAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTC-GTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCA-GAAACCTTATCGT</genome_strand>
        <mrna_strand>GTTCTGTAGAAATGGCACTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCTTATGGGACAAAGTATTTTGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCTTTTAGCTATAGAGCAAGAGCAAATGCAGCTCTTAATTCTCGTTCGAGTTCTGTTGAAATCCCTCGTCAGTGGTATAATCTAGTTGCAGACCTTCCAATCAAACCCCCTCCGTCGTTGCATCCCAAGACATTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCGTCGAGCAGTTTATTGATATACCAGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAGAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCGGCAGGGTCACACAAGCCCAACTCTGTTGTTCCTCAAGCCTGGTACAATAAAATGGGGAATGTTCACAAATGTGGTCACGGAGACTGGGGCAGGTCAATGGGGGAGCGCGTTGTCACTTTGCTTGCAGCTTATTTGGTCTCAATTGTGCA............................................................................GTATGGCAAGTTCGAGCTCCGTTTGATCACGAAAACTTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391581" ref_strand="+" ref_description="SGN-E391581 [TUS-16-A8]">
      <seq>tagaaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142979" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143279" g_stop="143317" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="373" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="590" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="144930" g_stop="145015" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="676" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E391581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143279" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="145015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCC</genome_strand>
        <mrna_strand>TAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203792" ref_strand="+" ref_description="SGN-E203792 [cLEC-17-N17]">
      <seq>agaaatggcagtatccctcccaaatctgtttccaaaaggggatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142980" stop="145082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143280" g_stop="143317" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="372" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144782" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="518" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E203792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143280" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTA</genome_strand>
        <mrna_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205157" ref_strand="+" ref_description="SGN-E205157 [cLEC-16-B19]">
      <seq>agaaatggcagtatccctcccaaatctgtttggaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142980" stop="145076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143280" g_stop="143317" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="372" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144776" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="512" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E205157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143280" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</genome_strand>
        <mrna_strand>AGAAATGGCAGTATCCCTCCCAAATCTGTTTGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341153" ref_strand="+" ref_description="SGN-E341153 [cTOE-22-D24]">
      <seq>aaatggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142982" stop="145076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143282" g_stop="143317" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="370" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144776" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="510" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E341153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143282" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</genome_strand>
        <mrna_strand>AAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209879" ref_strand="+" ref_description="SGN-E209879 [cLEC-52-M12]">
      <seq>ggcagtatccctcccaaatctgtttccaaaaggtgatgcgtatggaacaaagtatttcgagattaaaacaaagccaagtcaattgaagctttcgtttagctatagagcaagagcaaaggcagctcttaatcctcgttcgagttctgttgaaatccctcggcagtggtacaatctagttgcagaccttccaatcaaaccacctccaccgttgcatcccaagacgtttcagcctatcaaaccggaggacttatctccgcttttctgtgatgagttgattaagcaggaggcaagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgtttcctcaggcctggtacaataaaatggggaatgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="142986" stop="145073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143286" g_stop="143317" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144230" g_stop="144563" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="366" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144637" g_stop="144773" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="504" r_length="138" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E209879" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143286" e_stop="143317"/>
          <exon e_start="144230" e_stop="144563"/>
          <exon e_start="144637" e_stop="144773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGTATCCCTCCCAAATCTGTTTCCAAAAGGTCAGTTTTTTTTTTTTAAAAAAAATAATTACATTTTTGAAGTATATTTAATTGTGTTTTTATATACATATAAATTGTGTTTTGGGTACTTTTAGAGTATTGATCTGTTTTTTGATTTTTGATTTTGGGAAATGATTGTTCTTATTTTGATTTAGCTAATCTTGTTTGGTTAATTTGACTTTTAAGTATTATTTTCAGATTTGATTAGTTCTAATGACATAAATGAATCTAAACAAGTATTTATTAGTGGAAAAAAAAACACAATTTGATGTGTTTGGTGATGAATTACTAAAGTGTTTTAGTAATTTGATTTGCTTAGACAAACACTAAGTCAATTTTTTCACTGAAATTTAGCGATTCTGATTCGAAATAATGAAGTGTCATGTTTAGGGAGAGAAAAGGGGGTAATATAGTTCCTTAGCCACGATTCTGCTATTTGTTGCAATAATCTAGGATGAATCTCCCCGATGTTTAGAAATAGAACGAGTAAATACGATTTTCAATACTTTTTTGTAGTAGTAGTAGTTTAGGTAGGTTTATTTCCTCGATTGGGAGTGATGTGGGGCGATGATGGAATCGTTGAATGTTGAGAAATGAGAATAAGTACTCTCCTATCCCGACTTCCCTAGAGCTTCCGGAAGCACAGCCTAGACAGTGACGGGTTCTCTAGCCCTGCGGGGTTGGAAATGCATTGAGGTGTGAAGGTCGTGGTGAGAATGAGCTGTTAATCGTTAAGATAGGTGTCGAGTGGAAGTGCAGTGAGGCGTTCTAACAGACGGATAGACCTGAACCTTGTTCCTACATGAGCTGATCAATTCGATGAGGCATTAACCGTCTGTTTTTATTGTTCAAATCTTTTACAATACGTAAAAAAACGTTATGGTCTTGATCTAATTAAATGTTACTTGTCAGGTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTG-TTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAA</genome_strand>
        <mrna_strand>GGCAGTATCCCTCCCAAATCTGTTTCCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486661" ref_strand="+" ref_description="SGN-E486661 [cSTE-22-J2]">
      <seq>cttttctgtgatgagttgattaagcaggaggcaagcgtcgagcagtttattgatataccagaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggagaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggtcacggagactggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaaaatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggcaggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagctaagaatacagacaccaagtattgtttgggaagtgttctcaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaagatttcggagagactccagatgtgatcatcggttgcactgggagtggatctaattttgcaggacttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144154" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144454" g_stop="144563" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="327" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144930" g_stop="145281" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="679" r_length="352" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E486661" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144454" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="145281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTT</genome_strand>
        <mrna_strand>CTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCGTCGAGCAGTTTATTGATATACCAGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAGAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTCACGGAGACTGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAAATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCAGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCTAAGAATACAGACACCAAGTATTGTTTGGGAAGTGTTCTCAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAAGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACTGGGAGTGGATCTAATTTTGCAGGACTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482727" ref_strand="+" ref_description="SGN-E482727 [cSTE-5-K19]">
      <seq>cttttctgtgatgagttgattaagcaggaggcaagcgtcgagcagtttattgatataccagaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggagaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggtcacggagactggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaaaatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggcaggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagctaagaatacagacaccaagtattgtttaggaagtgttctcaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaagatttcggagagactccagatgtgatcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144154" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144454" g_stop="144563" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="327" r_length="217" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144930" g_stop="145242" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="640" r_length="313" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E482727" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144454" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="145242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCG</genome_strand>
        <mrna_strand>CTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCGTCGAGCAGTTTATTGATATACCAGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAGAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTCACGGAGACTGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAAATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCAGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCTAAGAATACAGACACCAAGTATTGTTTAGGAAGTGTTCTCAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAAGATTTCGGAGAGACTCCAGATGTGATCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302488" ref_strand="+" ref_description="SGN-E302488 [cLEW-27-N22]">
      <seq>aagcatcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144186" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144486" g_stop="144563" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="295" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144930" g_stop="145093" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="459" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E302488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144486" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="145093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</genome_strand>
        <mrna_strand>AAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273232" ref_strand="+" ref_description="SGN-E273232 [cLEM-24-K13]">
      <seq>catcgaccagtttattgatataccggaagaagttttagacgtctacagtctttggcgcccaacccctttgattagagcaaagaggttggaaaaactgcttgatacacccgcacgaatatattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144189" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144489" g_stop="144563" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144637" g_stop="144853" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="292" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144930" g_stop="145093" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="456" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E273232" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144489" e_stop="144563"/>
          <exon e_start="144637" e_stop="144853"/>
          <exon e_start="144930" e_stop="145093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAGGTTCGTGTTCTGTTTTTCTCAAGTATCAACTTTCATATTGCGAAAATTCTTAACATGTTGTGGTAACATTTAGAGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</genome_strand>
        <mrna_strand>CATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG.........................................................................AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273102" ref_strand="+" ref_description="SGN-E273102 [cLEM-24-I23]">
      <seq>ctcgtgccgattacaagtatgaaggtggtagccccgcggggtcgcacaagcccaactctgctgttcctcaggcctggtacaataaaatggggaatgttaaaaatgtggttacggagaccggggcaggtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144381" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144672" g_stop="144853" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144930" g_stop="145241" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="494" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E273102" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144672" e_stop="144853"/>
          <exon e_start="144930" e_stop="145241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATC</genome_strand>
        <mrna_strand>CTCGTGCCGATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257815" ref_strand="+" ref_description="SGN-E257815 [cLEG-39-A20]">
      <seq>gtcaatgggggagcgcgttgtcgtttgcttgcagcttatttggtctcaattgtgaggtatggggggttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattttgcaggacttgctttcccgtttatccgggagaagcttaaggggagaattaaccctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144498" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144798" g_stop="144853" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144930" g_stop="145304" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="431" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E257815" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144798" e_stop="144853"/>
          <exon e_start="144930" e_stop="145304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTT</genome_strand>
        <mrna_strand>GTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG............................................................................GTATGGGGGGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262324" ref_strand="+" ref_description="SGN-E262324 [cLEG-56-B12]">
      <seq>tcgtttgcttgcagcttatttggtctcaattgtgaggtaaatgtgtctgtagtttacgtgttcatttgcgatgagggagttcatccgccccgatctagaattttcagtgcaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattttgcaggaattgctttcccgnttatccgggagaagcttaaggggagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144518" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144818" g_stop="145304" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E262324" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144818" e_stop="145304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTT</genome_strand>
        <mrna_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGAATTGCTTTCCCGNTTATCCGGGAGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254762" ref_strand="+" ref_description="SGN-E254762 [cLEG-33-I23]">
      <seq>tcgtttgcttgcagcttatttggtctcaattgtgaggtaaatgtgtctgtagtttacgtgttcatttgcgatgagggagttcatccgccccgatctagaattttcagtgcaggtatggcaagttcgagcttcgtttgatcagaaaccttatcgtaagatgatgatgcaaacttggggtgcgaaggtgcatccttctccttccgaccttacagaggccggtcgggctattctacaaatggatccttcaagtccaggaagtttaggaatagctatttcagaggctgtggaggttgcagcgaagaacgctgacaccaagtattgtttgggaagtgttctgaatcatgttttgttacatcagaccgttatcggtgaggagtgtataaaacagatggaggatttcggagagactccagatgtgatcatcggttgcacgggaggtggatctaattgtgcacgacttgctttcccgtttatccgggagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0210G12-YtmHA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C12HBa0210G12.1" temp_strand="+" temp_description="C12HBa0210G12.1  AC217495.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0210G12 upload_account_name:italy *** SEQUENCING IN PROGRESS ***">
        <position start="144518" stop="145304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144818" g_stop="145303" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0210G12.1" gen_strand="+" ref_id="SGN-E254762" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0210G12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144818" e_stop="145303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCT</genome_strand>
        <mrna_strand>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTGTGCACGACTTGCTTTCCCGTTTATCCGGGAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>345</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6923" PGL_stop="6663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6923" e_stop="6663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6923" e_stop="6663" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6923" stop="6663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAAGAGGAGTGACCAGAAACAACAGAAGCAGAAGCACCGGCGGCAGGTGCAACGGCGGCGATTGTGTCGGTGGTAGGCAGTTGGAGTTGGTCGGTAAGGGATGCGATTCGGGTTGTACATTTGGTTCTTCGCCGCCGGAGGAGGAAATTGCGGCGGCTTCGCGGCGGCTTTGGGATTGACGGCCGCCGCAGCGGCACCGGTAATATTGGCAGCGTTGCCATTTGGCTTAGCTGAAGGGTGAACTCTGTCAGCCATTTTT</gDNA_template>
            <first_frame> M  K  R  S  D  Q  K  Q  Q  K  Q  K  H  R  R  Q  V  Q  R  R  R  L  C  R  W  *  A  V  G  V  G  R  *  G  M  R  F  G  L  Y  I  W  F  F  A  A  G  G  G  N  C  G  G  F  A  A  A  L  G  L  T  A  A  A  A  A  P  V  I  L  A  A  L  P  F  G  L  A  E  G  *  T  L  S  A  I  F </first_frame>
            <second_frame>  *  R  G  V  T  R  N  N  R  S  R  S  T  G  G  R  C  N  G  G  D  C  V  G  G  R  Q  L  E  L  V  G  K  G  C  D  S  G  C  T  F  G  S  S  P  P  E  E  E  I  A  A  A  S  R  R  L  W  D  *  R  P  P  Q  R  H  R  *  Y  W  Q  R  C  H  L  A  *  L  K  G  E  L  C  Q  P  F   </second_frame>
            <third_frame>   E  E  E  *  P  E  T  T  E  A  E  A  P  A  A  G  A  T  A  A  I  V  S  V  V  G  S  W  S  W  S  V  R  D  A  I  R  V  V  H  L  V  L  R  R  R  R  R  K  L  R  R  L  R  G  G  F  G  I  D  G  R  R  S  G  T  G  N  I  G  S  V  A  I  W  L  S  *  R  V  N  S  V  S  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6909" stop="6688"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PETTEAEAPAAGATAAIVSVVGSWSWSVRDAIRVVHLVLRRRRRKLRRLRGGFGIDGRRSGTGNIGSVAIWLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6663" PGL_stop="7967"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6663" e_stop="7967"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6663" e_stop="7967" e_length="1305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6663" stop="6923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6675" stop="7410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6676" stop="7242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7260" stop="7967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7261" stop="7815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGGCTGACAGAGTTCACCCTTCAGCTAAGCCAAATGGCAACGCTGCCAATATTACCGGTGCCGCTGCGGCGGCCGTCAATCCCAAAGCCGCCGCGAAGCCGCCGCAATTTCCTCCTCCGGCGGCGAAGAACCAAATGTACAACCCGAATCGCATCCCTTACCGACCAACTCCAACTGCCTACCACCGACACAATCGCCGCCGTTGCACCTGCCGCCGGTGCTTCTGCTTCTGTTGTTTCTGGTCACTCCTCTTCATCTGCACCGTCCTCCTCCTCGCCACAATCGCCGGCGCCGGTTTCTACTTCCTATTCCGTCCAAAACCTCCGGCATTCTCCGTTTCCTCACTCAAAATCATCCAATTCAAACTCACCACTACCTCCGACGACACTACACACCTCACCGTTAAGCTCAATCTCACACTCTCCACTAAAAACCCTAACAAAAAGCTGATTTACAGTTACGATCCAATTTCCTTAACTGTAAACTCGAATTCAGTTCTACTAGCTAATGGATCGTTCACAGGATTCAACAGCGGTCCTAATAACATCACAATCATTCACTCAACTCTATCAATGGCGTCTCAAGTGCTCGATGCGGATTCAATTTCATCGTTGAAATCAGATCTGAAAAGAAAAAATGGATTACCGATGAAGATCTTGTTGGATACAATGGTGCTAGCGAAAATGGATAAATTGAAAAGTAAGGAAGTCGGGATCAGAGTTACTTGTGACGGAATCCATGGAAGAATTCCGACGGGGAAAACTCCGGCGGTGGCTTCAACTACAAATGCTAAATGTAAGGCTGATTTACGTATGAAGATCTTAAAATGGACCTTCTAAATTCATTTTTTCGGGACGAGCGAAGGGCGAAAAACACATCTAAATTATCTCGATGAATTATTTATCGGTGTGGAGGTCCTTTTTTATTTGAAGTATGATCAAATATTTATCGAATCACACGTTAACCATACGTTTTCACTTTTTTCTACCTTAATACGGTAATAATTCAGGTAGAAAACGTGAATGGCTATAGCTTACGTATGTTTTGATAAATAATTGGTTATAATTCGGATAGAAAAAGCAAACACGTGATAATTTGGATAGAAAATTCAAAAAATCGAGATAGTTAAATGTAGTTTTTTTTTTTTTACTCTTTAACTTATTTTTCGTTGTTTTTATTTTTATTTATCAATTATTTGCTTGATTTTTGCAATTTATTCATAATAATATTATACTATACTATTTATTTAGTAGAGATGAGGCAAATTGAGGGGGAAAATGGTTTTATGTAGATTTTTTTT</gDNA_template>
            <first_frame> K  N  G  *  Q  S  S  P  F  S  *  A  K  W  Q  R  C  Q  Y  Y  R  C  R  C  G  G  R  Q  S  Q  S  R  R  E  A  A  A  I  S  S  S  G  G  E  E  P  N  V  Q  P  E  S  H  P  L  P  T  N  S  N  C  L  P  P  T  Q  S  P  P  L  H  L  P  P  V  L  L  L  L  L  F  L  V  T  P  L  H  L  H  R  P  P  P  R  H  N  R  R  R  R  F  L  L  P  I  P  S  K  T  S  G  I  L  R  F  L  T  Q  N  H  P  I  Q  T  H  H  Y  L  R  R  H  Y  T  P  H  R  *  A  Q  S  H  T  L  H  *  K  P  *  Q  K  A  D  L  Q  L  R  S  N  F  L  N  C  K  L  E  F  S  S  T  S  *  W  I  V  H  R  I  Q  Q  R  S  *  *  H  H  N  H  S  L  N  S  I  N  G  V  S  S  A  R  C  G  F  N  F  I  V  E  I  R  S  E  K  K  K  W  I  T  D  E  D  L  V  G  Y  N  G  A  S  E  N  G  *  I  E  K  *  G  S  R  D  Q  S  Y  L  *  R  N  P  W  K  N  S  D  G  E  N  S  G  G  G  F  N  Y  K  C  *  M  *  G  *  F  T  Y  E  D  L  K  M  D  L  L  N  S  F  F  R  D  E  R  R  A  K  N  T  S  K  L  S  R  *  I  I  Y  R  C  G  G  P  F  L  F  E  V  *  S  N  I  Y  R  I  T  R  *  P  Y  V  F  T  F  F  Y  L  N  T  V  I  I  Q  V  E  N  V  N  G  Y  S  L  R  M  F  *  *  I  I  G  Y  N  S  D  R  K  S  K  H  V  I  I  W  I  E  N  S  K  N  R  D  S  *  M  *  F  F  F  F  Y  S  L  T  Y  F  S  L  F  L  F  L  F  I  N  Y  L  L  D  F  C  N  L  F  I  I  I  L  Y  Y  T  I  Y  L  V  E  M  R  Q  I  E  G  E  N  G  F  M  *  I  F  F </first_frame>
            <second_frame>  K  M  A  D  R  V  H  P  S  A  K  P  N  G  N  A  A  N  I  T  G  A  A  A  A  A  V  N  P  K  A  A  A  K  P  P  Q  F  P  P  P  A  A  K  N  Q  M  Y  N  P  N  R  I  P  Y  R  P  T  P  T  A  Y  H  R  H  N  R  R  R  C  T  C  R  R  C  F  C  F  C  C  F  W  S  L  L  F  I  C  T  V  L  L  L  A  T  I  A  G  A  G  F  Y  F  L  F  R  P  K  P  P  A  F  S  V  S  S  L  K  I  I  Q  F  K  L  T  T  T  S  D  D  T  T  H  L  T  V  K  L  N  L  T  L  S  T  K  N  P  N  K  K  L  I  Y  S  Y  D  P  I  S  L  T  V  N  S  N  S  V  L  L  A  N  G  S  F  T  G  F  N  S  G  P  N  N  I  T  I  I  H  S  T  L  S  M  A  S  Q  V  L  D  A  D  S  I  S  S  L  K  S  D  L  K  R  K  N  G  L  P  M  K  I  L  L  D  T  M  V  L  A  K  M  D  K  L  K  S  K  E  V  G  I  R  V  T  C  D  G  I  H  G  R  I  P  T  G  K  T  P  A  V  A  S  T  T  N  A  K  C  K  A  D  L  R  M  K  I  L  K  W  T  F  *  I  H  F  F  G  T  S  E  G  R  K  T  H  L  N  Y  L  D  E  L  F  I  G  V  E  V  L  F  Y  L  K  Y  D  Q  I  F  I  E  S  H  V  N  H  T  F  S  L  F  S  T  L  I  R  *  *  F  R  *  K  T  *  M  A  I  A  Y  V  C  F  D  K  *  L  V  I  I  R  I  E  K  A  N  T  *  *  F  G  *  K  I  Q  K  I  E  I  V  K  C  S  F  F  F  F  T  L  *  L  I  F  R  C  F  Y  F  Y  L  S  I  I  C  L  I  F  A  I  Y  S  *  *  Y  Y  T  I  L  F  I  *  *  R  *  G  K  L  R  G  K  M  V  L  C  R  F  F   </second_frame>
            <third_frame>   K  W  L  T  E  F  T  L  Q  L  S  Q  M  A  T  L  P  I  L  P  V  P  L  R  R  P  S  I  P  K  P  P  R  S  R  R  N  F  L  L  R  R  R  R  T  K  C  T  T  R  I  A  S  L  T  D  Q  L  Q  L  P  T  T  D  T  I  A  A  V  A  P  A  A  G  A  S  A  S  V  V  S  G  H  S  S  S  S  A  P  S  S  S  S  P  Q  S  P  A  P  V  S  T  S  Y  S  V  Q  N  L  R  H  S  P  F  P  H  S  K  S  S  N  S  N  S  P  L  P  P  T  T  L  H  T  S  P  L  S  S  I  S  H  S  P  L  K  T  L  T  K  S  *  F  T  V  T  I  Q  F  P  *  L  *  T  R  I  Q  F  Y  *  L  M  D  R  S  Q  D  S  T  A  V  L  I  T  S  Q  S  F  T  Q  L  Y  Q  W  R  L  K  C  S  M  R  I  Q  F  H  R  *  N  Q  I  *  K  E  K  M  D  Y  R  *  R  S  C  W  I  Q  W  C  *  R  K  W  I  N  *  K  V  R  K  S  G  S  E  L  L  V  T  E  S  M  E  E  F  R  R  G  K  L  R  R  W  L  Q  L  Q  M  L  N  V  R  L  I  Y  V  *  R  S  *  N  G  P  S  K  F  I  F  S  G  R  A  K  G  E  K  H  I  *  I  I  S  M  N  Y  L  S  V  W  R  S  F  F  I  *  S  M  I  K  Y  L  S  N  H  T  L  T  I  R  F  H  F  F  L  P  *  Y  G  N  N  S  G  R  K  R  E  W  L  *  L  T  Y  V  L  I  N  N  W  L  *  F  G  *  K  K  Q  T  R  D  N  L  D  R  K  F  K  K  S  R  *  L  N  V  V  F  F  F  L  L  F  N  L  F  F  V  V  F  I  F  I  Y  Q  L  F  A  *  F  L  Q  F  I  H  N  N  I  I  L  Y  Y  L  F  S  R  D  E  A  N  *  G  G  K  W  F  Y  V  D  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6664" stop="7506"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMADRVHPSAKPNGNAANITGAAAAAVNPKAAAKPPQFPPPAAKNQMYNPNRIPYRPTPTAYHRHNRRRCTCRRCFCFCCFWSLLFICTVLLLATIAGAGFYFLFRPKPPAFSVSSLKIIQFKLTTTSDDTTHLTVKLNLTLSTKNPNKKLIYSYDPISLTVNSNSVLLANGSFTGFNSGPNNITIIHSTLSMASQVLDADSISSLKSDLKRKNGLPMKILLDTMVLAKMDKLKSKEVGIRVTCDGIHGRIPTGKTPAVASTTNAKCKADLRMKILKWTF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19444" PGL_stop="7448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13319" e_stop="13168"/>
            <exon e_start="11854" e_stop="11786"/>
            <exon e_start="11660" e_stop="11554"/>
            <exon e_start="11465" e_stop="11035"/>
            <exon e_start="10353" e_stop="9430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.803"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.803">
            <gDNA_exon_boundary e_start="13319" e_stop="13168" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11786" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11660" e_stop="11554" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11465" e_stop="11035" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10353" e_stop="9430" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13319" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13316" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13310" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13310" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13310" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13309" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13308" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13304" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13303" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13300" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="9515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13300" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13296" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13296" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13296" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13294" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13292" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13291" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13282" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13270" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13267" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13258" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11843" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11833" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11830" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11625" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="11035"/>
              <exon start="10353" stop="9975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11403" stop="11035"/>
              <exon start="10353" stop="9809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11375" stop="11035"/>
              <exon start="10353" stop="10212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11316" stop="11035"/>
              <exon start="10353" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="11035"/>
              <exon start="10353" stop="9927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11132" stop="11035"/>
              <exon start="10353" stop="9955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11118" stop="11035"/>
              <exon start="10353" stop="9939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11058" stop="11035"/>
              <exon start="10353" stop="9512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10353" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10324" stop="9655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="9703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="9430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  S  R  R  K  S  Q  E  F  F  E  K  K  F  R  L  Y  N  P  N  S  K  K  P  P  F  S  Q  I  S  N  L  S  L  K  I  F  L  L  T  S  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  I  P  G  V  N  P  K  N  F  L  K  K  S  S  V  F  T  T  P  I  L  K  N  P  L  F  P  K  F  Q  I  F  L  *  K  S  S  C  *  H  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  K  F  P  A  *  I  P  R  I  F  *  K  K  V  P  S  L  Q  P  Q  F  *  K  T  P  F  F  P  N  F  K  S  F  F  K  N  L  L  V  N  I  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13319" stop="13168"/>
                    <exon start="11854" stop="11786"/>
                    <exon start="11660" stop="11554"/>
                    <exon start="11465" stop="11035"/>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSHNIVFLNSRRKSQEFFEKKFRLYNPNSKKPPFSQISNLSLKIFLLTSSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13319" e_stop="13168"/>
            <exon e_start="11854" e_stop="11786"/>
            <exon e_start="11660" e_stop="11554"/>
            <exon e_start="11465" e_stop="11035"/>
            <exon e_start="10353" e_stop="9515"/>
            <exon e_start="8052" e_stop="7448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.803"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.803">
            <gDNA_exon_boundary e_start="13319" e_stop="13168" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11786" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11660" e_stop="11554" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11465" e_stop="11035" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10353" e_stop="9515" e_length="839"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9514" i_stop="8053" i_length="1462"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="8052" e_stop="7448" e_length="605"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13319" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13316" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13310" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13310" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13310" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13309" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13308" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13304" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13303" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13300" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="9515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13300" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13296" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13296" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13296" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13295" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13294" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13292" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13291" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13282" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
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              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13270" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13267" stop="13168"/>
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              <exon start="10353" stop="10323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
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              <exon start="10353" stop="10330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
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              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13258" stop="13168"/>
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              <exon start="11465" stop="11120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
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              <exon start="10353" stop="10186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
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              <exon start="10353" stop="10322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
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            <referenceDNA id="SGN-E402942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11843" stop="11786"/>
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            <referenceDNA id="SGN-E447751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11833" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11830" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11625" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9868"/>
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            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="11035"/>
              <exon start="10353" stop="9975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11403" stop="11035"/>
              <exon start="10353" stop="9809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11375" stop="11035"/>
              <exon start="10353" stop="10212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11316" stop="11035"/>
              <exon start="10353" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="11035"/>
              <exon start="10353" stop="9927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11132" stop="11035"/>
              <exon start="10353" stop="9955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11118" stop="11035"/>
              <exon start="10353" stop="9939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10353" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10324" stop="9655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="9703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9583" stop="9515"/>
              <exon start="8052" stop="7448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539253" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAAT : ATTTATTAAGAATAATATATCAAACTCTTTTTTTTTTTTTTTGCTTTTTGGTATATTATAATTATATCAAACACTATATTTCACCAAAAAAAATCTACATAAAACCATTTTCCCCCTCAATTTGCCTCATCTCTACTAAATAAATAGTATAGTATAATATTATTATGAATAAATTGCAAAAATCAAGCAAATAATTGATAAATAAAAATAAAAACAACGAAAAATAAGTTAAAGAGTAAAAAAAAAAAAACTACATTTAACTATCTCGATTTTTTGAATTTTCTATCCAAATTATCACGTGTTTGCTTTTTCTATCCGAATTATAACCAATTATTTATCAAAACATACGTAAGCTATAGCCATTCACGTTTTCTACCTGAATTATTACCGTATTAAGGTAGAAAAAAGTGAAAACGTATGGTTAACGTGTGATTCGATAAATATTTGATCATACTTCAAATAAAAAAGGACCTCCACACCGATAAATAATTCATCGAGATAATTTAGATGTGTTTTTCGCCCTTCGCTCGTCCCGAAAAAATGAATTTAGAAGGTCCATTTTAAGATCTTCATACGTAAATCAGCCTTACATTTAGCATTTGTAG</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  S  R  R  K  S  Q  E  F  F  E  K  K  F  R  L  Y  N  P  N  S  K  K  P  P  F  S  Q  I  S  N  L  S  L  K  I  F  L  L  T  S  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  I :   F  I  K  N  N  I  S  N  S  F  F  F  F  L  L  F  G  I  L  *  L  Y  Q  T  L  Y  F  T  K  K  N  L  H  K  T  I  F  P  L  N  L  P  H  L  Y  *  I  N  S  I  V  *  Y  Y  Y  E  *  I  A  K  I  K  Q  I  I  D  K  *  K  *  K  Q  R  K  I  S  *  R  V  K  K  K  K  L  H  L  T  I  S  I  F  *  I  F  Y  P  N  Y  H  V  F  A  F  S  I  R  I  I  T  N  Y  L  S  K  H  T  *  A  I  A  I  H  V  F  Y  L  N  Y  Y  R  I  K  V  E  K  S  E  N  V  W  L  T  C  D  S  I  N  I  *  S  Y  F  K  *  K  R  T  S  T  P  I  N  N  S  S  R  *  F  R  C  V  F  R  P  S  L  V  P  K  K  *  I  *  K  V  H  F  K  I  F  I  R  K  S  A  L  H  L  A  F  V  </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  I  P  G  V  N  P  K  N  F  L  K  K  S  S  V  F  T  T  P  I  L  K  N  P  L  F  P  K  F  Q  I  F  L  *  K  S  S  C  *  H  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *   : Y  L  L  R  I  I  Y  Q  T  L  F  F  F  F  C  F  L  V  Y  Y  N  Y  I  K  H  Y  I  S  P  K  K  I  Y  I  K  P  F  S  P  S  I  C  L  I  S  T  K  *  I  V  *  Y  N  I  I  M  N  K  L  Q  K  S  S  K  *  L  I  N  K  N  K  N  N  E  K  *  V  K  E  *  K  K  K  N  Y  I  *  L  S  R  F  F  E  F  S  I  Q  I  I  T  C  L  L  F  L  S  E  L  *  P  I  I  Y  Q  N  I  R  K  L  *  P  F  T  F  S  T  *  I  I  T  V  L  R  *  K  K  V  K  T  Y  G  *  R  V  I  R  *  I  F  D  H  T  S  N  K  K  G  P  P  H  R  *  I  I  H  R  D  N  L  D  V  F  F  A  L  R  S  S  R  K  N  E  F  R  R  S  I  L  R  S  S  Y  V  N  Q  P  Y  I  *  H  L  * </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  K  F  P  A  *  I  P  R  I  F  *  K  K  V  P  S  L  Q  P  Q  F  *  K  T  P  F  F  P  N  F  K  S  F  F  K  N  L  L  V  N  I  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  :  I  Y  *  E  *  Y  I  K  L  F  F  F  F  F  A  F  W  Y  I  I  I  I  S  N  T  I  F  H  Q  K  K  S  T  *  N  H  F  P  P  Q  F  A  S  S  L  L  N  K  *  Y  S  I  I  L  L  *  I  N  C  K  N  Q  A  N  N  *  *  I  K  I  K  T  T  K  N  K  L  K  S  K  K  K  K  T  T  F  N  Y  L  D  F  L  N  F  L  S  K  L  S  R  V  C  F  F  Y  P  N  Y  N  Q  L  F  I  K  T  Y  V  S  Y  S  H  S  R  F  L  P  E  L  L  P  Y  *  G  R  K  K  *  K  R  M  V  N  V  *  F  D  K  Y  L  I  I  L  Q  I  K  K  D  L  H  T  D  K  *  F  I  E  I  I  *  M  C  F  S  P  F  A  R  P  E  K  M  N  L  E  G  P  F  *  D  L  H  T  *  I  S  L  T  F  S  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13319" stop="13168"/>
                    <exon start="11854" stop="11786"/>
                    <exon start="11660" stop="11554"/>
                    <exon start="11465" stop="11035"/>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSHNIVFLNSRRKSQEFFEKKFRLYNPNSKKPPFSQISNLSLKIFLLTSSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7851" stop="7657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKIKTTKNKLKSKKKKTTFNYLDFLNFLSKLSRVCFFYPNYNQLFIKTYVSYSHSRFLPELLPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19444" e_stop="19335"/>
            <exon e_start="17904" e_stop="17844"/>
            <exon e_start="17667" e_stop="17561"/>
            <exon e_start="17472" e_stop="17042"/>
            <exon e_start="15897" e_stop="15005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.396" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.033" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.807" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19444" e_stop="19335" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.396">
            <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17904" e_stop="17844" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17667" e_stop="17561" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.033">
            <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17472" e_stop="17042" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.807">
            <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144"/>
          </intron>
          <exon e_serial="5" e_score="0.954">
            <gDNA_exon_boundary e_start="15897" e_stop="15005" e_length="893"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19444" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19438" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19438" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19430" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19429" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19429" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19428" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19428" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19426" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19426" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19425" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19420" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19419" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19416" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19415" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19411" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19410" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19409" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19379" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19379" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19379" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19374" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17901" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17665" stop="17561"/>
              <exon start="17472" stop="17216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17624" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17454" stop="17042"/>
              <exon start="15897" stop="15515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17042"/>
              <exon start="15897" stop="15683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17414" stop="17042"/>
              <exon start="15897" stop="15753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17314" stop="17042"/>
              <exon start="15897" stop="15614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17306" stop="17042"/>
              <exon start="15897" stop="15437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17153" stop="17042"/>
              <exon start="15897" stop="15280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17077" stop="17042"/>
              <exon start="15897" stop="15237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17073" stop="17042"/>
              <exon start="15897" stop="15397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15895" stop="15491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15877" stop="15299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15868" stop="15081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15691" stop="15007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15467" stop="15005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15430" stop="15008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA : TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT : GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG : GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</gDNA_template>
            <first_frame> L  N  S  A  A  *  I  R  G  V  F  V  K  L  Q  S  L  K  T  L  I  L  K  S  F  R  S  F  F  D  K  L  Q  I  T  I  N :   H  G  S  R  R  F  S  V  *  C  S  S  I  R  C  K  N  D  R  T  :  A  W  Y  *  T  T  G  I  L  H  I  I  *  *  G  S  R  Q  F  *  C  H  G  F  A  R  K  S  P  E  G  H  L  C  L  W :   F  *  E  A  I  C  Y  S  A  K  G  H  C  S  F  L  Q  G  P  *  C  H  P  A  G  T  I  W  Y  W  K  D  G  N  F  L  L  W  N  S  P  A  A  *  L  Q  F  S  *  V  S  G  S  G  S  C  T  N  P  *  A  C  T  T  D  *  E  G  Y  E  S  T  W  *  L  P  G  C  E  G  S  C  L  C  W  G  Y  Q  C  P  *  G  S  A  H  P  S  E  R  C  S  C  C  G  W  Y  S  R  P  C  L  *  H  V  A  Q  A  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  R  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H  P  E  R  H  L  C  *  H  *  A  K  G  *  L  A  H  *  *  N  A  W  T  *  P  H  S  I  C  N  S  W  R  H  G  S  E  H  K  R  Y  H  H  E  G  V  P  I  W  L  I  S  C  A  Y  H  N  R  S  P  C  S  W  Y  *  C  P  T  S  L  P  C  Y  *  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  H  Q  G  *  *  K  D  A  F  *  H  T  E  V  L  Q  R  R  N  *  G  A  P  S  Q  C  C  *  S  P  L  R  R  F  L  V  Y  L  F  L  D  L  V  S  V  C  T  R  L  G  I  R  K  C  W  *  P  W  F  A  T  A  P  V  P  F  L  I  Q  M  K  P  F  F  F  F  C  K  F  C  L  V  C  H  F  I  P  L  K  Y  P  N  N  F  V  F  G  V  V  *  I  V  *  L  I  Y  F  P  M  E  G  K  A  F  S  W  I </first_frame>
            <second_frame>  S  T  P  R  R  R  S  E  E  F  L  *  N  C  S  L  *  K  P  *  F  S  N  L  S  D  L  S  L  T  N  F  K  S  P  S   : I  M  A  A  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  E  F  F  T  S  Y  D  E  V  H  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  I  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  D  F  W  Y  I  Y  S  *  I  *  Y  Q  F  V  L  D  L  E  L  G  N  A  G  S  H  G  L  P  Q  H  Q  F  L  S  *  F  K  *  N  L  F  F  F  F  A  N  F  V  W  F  V  I  L  Y  L  *  S  I  Q  I  T  L  Y  L  V  L  F  E  L  F  N  *  S  I  S  L  W  K  V  K  L  L  V  G   </second_frame>
            <third_frame>   Q  L  R  G  V  D  P  R  S  F  C  K  T  A  V  F  E  N  P  N  S  Q  I  F  Q  I  F  L  *  Q  T  S  N  H  H  Q  :  S  W  Q  Q  K  V  L  S  L  M  L  V  N  S  M  Q  K  *  Q  N   : C  L  V  L  N  N  R  N  S  S  H  H  M  M  R  F  T  T  V  L  M  P  W  V  C  K  K  I  S  *  G  A  S  M  P  M  :  V  L  R  S  H  L  L  F  S  K  G  A  L  F  L  F  A  R  A  L  M  S  S  S  R  H  N  L  V  L  E  R  R  Q  L  S  A  L  E  F  S  S  S  L  I  T  V  *  L  S  V  R  L  W  F  L  H  Q  P  V  S  L  H  N  R  L  R  R  L  *  E  H  L  V  T  T  W  V  *  R  F  M  L  V  L  G  V  P  V  S  V  R  I  S  A  S  F  R  A  V  F  M  L  W  L  V  L  Q  A  V  S  L  T  C  C  A  G  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  T  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P  R  A  S  S  L  L  T  L  G  E  R  L  T  G  S  L  I  K  C  V  D  V  T  T  Q  Y  L  Q  L  M  E  T  W  I  R  T  Q  E  I  S  S  *  G  S  S  D  L  A  H  L  V  C  L  S  Q  P  I  S  L  L  V  V  L  M  S  N  K  S  P  L  L  L  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  S  P  R  M  M  K  G  C  F  L  T  Y  R  S  F  T  T  S  *  L  R  S  S  Q  P  M  L  L  I  S  S  K  A  I  F  G  I  F  I  L  R  F  S  I  S  L  Y  *  T  W  N  *  E  M  L  V  A  M  V  C  H  S  T  S  S  F  P  D  S  N  E  T  F  F  F  F  L  Q  I  L  F  G  L  S  F  Y  T  F  K  V  S  K  *  L  C  I  W  C  C  L  N  C  L  I  D  L  F  P  Y  G  R  *  S  F  *  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19383" stop="19335"/>
                    <exon start="17904" stop="17844"/>
                    <exon start="17667" stop="17561"/>
                    <exon start="17472" stop="17042"/>
                    <exon start="15897" stop="15262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNLSDLSLTNFKSPSIMAAEGSQFDARQFDAKMTELLGTEQQEFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="19444" e_stop="19335"/>
            <exon e_start="17904" e_stop="17844"/>
            <exon e_start="17667" e_stop="17561"/>
            <exon e_start="17472" e_stop="17042"/>
            <exon e_start="15897" e_stop="15074"/>
            <exon e_start="13167" e_stop="13077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.396" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.719" acc_prob="0.033" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.521" e_score="0.954"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19444" e_stop="19335" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.396">
            <gDNA_intron_boundary i_start="19334" i_stop="17905" i_length="1430"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17904" e_stop="17844" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17667" e_stop="17561" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.719" acc_prob="0.033">
            <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17472" e_stop="17042" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.807">
            <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144"/>
          </intron>
          <exon e_serial="5" e_score="0.954">
            <gDNA_exon_boundary e_start="15897" e_stop="15074" e_length="824"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="15073" i_stop="13168" i_length="1906"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="13167" e_stop="13077" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19444" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19438" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19438" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19430" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19429" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19429" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19428" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19428" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19426" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19426" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19425" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19423" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19420" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19419" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19416" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19415" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19411" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19410" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19409" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19404" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19379" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19379" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19379" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19374" stop="19335"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17901" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17665" stop="17561"/>
              <exon start="17472" stop="17216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17624" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17454" stop="17042"/>
              <exon start="15897" stop="15515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17042"/>
              <exon start="15897" stop="15683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17414" stop="17042"/>
              <exon start="15897" stop="15753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17314" stop="17042"/>
              <exon start="15897" stop="15614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17306" stop="17042"/>
              <exon start="15897" stop="15437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17153" stop="17042"/>
              <exon start="15897" stop="15280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17077" stop="17042"/>
              <exon start="15897" stop="15237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17073" stop="17042"/>
              <exon start="15897" stop="15397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15895" stop="15491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15877" stop="15299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15868" stop="15081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15511" stop="15074"/>
              <exon start="13167" stop="13077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAACTCCGCGGCGTAGATCCGAGGAGTTTTTGTAAAACTGCAGTCTTTGAAAACCCTAATTCTCAAATCTTTCAGATCTTTCTTTGACAAACTTCAAATCACCATCAA : TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT : GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG : GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTT : GGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> L  N  S  A  A  *  I  R  G  V  F  V  K  L  Q  S  L  K  T  L  I  L  K  S  F  R  S  F  F  D  K  L  Q  I  T  I  N :   H  G  S  R  R  F  S  V  *  C  S  S  I  R  C  K  N  D  R  T  :  A  W  Y  *  T  T  G  I  L  H  I  I  *  *  G  S  R  Q  F  *  C  H  G  F  A  R  K  S  P  E  G  H  L  C  L  W :   F  *  E  A  I  C  Y  S  A  K  G  H  C  S  F  L  Q  G  P  *  C  H  P  A  G  T  I  W  Y  W  K  D  G  N  F  L  L  W  N  S  P  A  A  *  L  Q  F  S  *  V  S  G  S  G  S  C  T  N  P  *  A  C  T  T  D  *  E  G  Y  E  S  T  W  *  L  P  G  C  E  G  S  C  L  C  W  G  Y  Q  C  P  *  G  S  A  H  P  S  E  R  C  S  C  C  G  W  Y  S  R  P  C  L  *  H  V  A  Q  A  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  R  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H  P  E  R  H  L  C  *  H  *  A  K  G  *  L  A  H  *  *  N  A  W  T  *  P  H  S  I  C  N  S  W  R  H  G  S  E  H  K  R  Y  H  H  E  G  V  P  I  W  L  I  S  C  A  Y  H  N  R  S  P  C  S  W  Y  *  C  P  T  S  L  P  C  Y  *  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  H  Q  G  *  *  K  D  A  F  *  H  T  E  V  L  Q  R  R  N  *  G  A  P  S  Q  C  C  *  S  P  L  R  R  F  L  V  Y  L  F  L  D  L  V  S  V  C  T  R  L  G  I  R  K  C  W  *  P  W  F  A  T  A  P  V  P  F  L  I  Q  M  K  P  F  F  F  F  C  K  F  C  L  V  C  H  F  I  P  L  K  Y  P  N  N  F  :  G  T  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  S  T  P  R  R  R  S  E  E  F  L  *  N  C  S  L  *  K  P  *  F  S  N  L  S  D  L  S  L  T  N  F  K  S  P  S   : I  M  A  A  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  E  F  F  T  S  Y  D  E  V  H  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  I  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  D  F  W  Y  I  Y  S  *  I  *  Y  Q  F  V  L  D  L  E  L  G  N  A  G  S  H  G  L  P  Q  H  Q  F  L  S  *  F  K  *  N  L  F  F  F  F  A  N  F  V  W  F  V  I  L  Y  L  *  S  I  Q  I  T  L :   E  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   Q  L  R  G  V  D  P  R  S  F  C  K  T  A  V  F  E  N  P  N  S  Q  I  F  Q  I  F  L  *  Q  T  S  N  H  H  Q  :  S  W  Q  Q  K  V  L  S  L  M  L  V  N  S  M  Q  K  *  Q  N   : C  L  V  L  N  N  R  N  S  S  H  H  M  M  R  F  T  T  V  L  M  P  W  V  C  K  K  I  S  *  G  A  S  M  P  M  :  V  L  R  S  H  L  L  F  S  K  G  A  L  F  L  F  A  R  A  L  M  S  S  S  R  H  N  L  V  L  E  R  R  Q  L  S  A  L  E  F  S  S  S  L  I  T  V  *  L  S  V  R  L  W  F  L  H  Q  P  V  S  L  H  N  R  L  R  R  L  *  E  H  L  V  T  T  W  V  *  R  F  M  L  V  L  G  V  P  V  S  V  R  I  S  A  S  F  R  A  V  F  M  L  W  L  V  L  Q  A  V  S  L  T  C  C  A  G  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  T  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P  R  A  S  S  L  L  T  L  G  E  R  L  T  G  S  L  I  K  C  V  D  V  T  T  Q  Y  L  Q  L  M  E  T  W  I  R  T  Q  E  I  S  S  *  G  S  S  D  L  A  H  L  V  C  L  S  Q  P  I  S  L  L  V  V  L  M  S  N  K  S  P  L  L  L  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  S  P  R  M  M  K  G  C  F  L  T  Y  R  S  F  T  T  S  *  L  R  S  S  Q  P  M  L  L  I  S  S  K  A  I  F  G  I  F  I  L  R  F  S  I  S  L  Y  *  T  W  N  *  E  M  L  V  A  M  V  C  H  S  T  S  S  F  P  D  S  N  E  T  F  F  F  F  L  Q  I  L  F  G  L  S  F  Y  T  F  K  V  S  K  *  L   : W  N  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19383" stop="19335"/>
                    <exon start="17904" stop="17844"/>
                    <exon start="17667" stop="17561"/>
                    <exon start="17472" stop="17042"/>
                    <exon start="15897" stop="15262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1281</number_coding_nucleotides>
                  <number_encoded_amino_acids>427</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSNLSDLSLTNFKSPSIMAAEGSQFDARQFDAKMTELLGTEQQEFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15187" stop="15074"/>
                    <exon start="13167" stop="13078"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PWFATAPVPFLIQMKPFFFFCKFCLVCHFIPLKYPNNFGTFFFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="14474" e_stop="14448"/>
            <exon e_start="13293" e_stop="13168"/>
            <exon e_start="11854" e_stop="11786"/>
            <exon e_start="11660" e_stop="11554"/>
            <exon e_start="11465" e_stop="11035"/>
            <exon e_start="10353" e_stop="9430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.832" acc_prob="0.000" e_score="0.519"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.793"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.519">
            <gDNA_exon_boundary e_start="14474" e_stop="14448" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.832" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14447" i_stop="13294" i_length="1154"/>
          </intron>
          <exon e_serial="2" e_score="0.793">
            <gDNA_exon_boundary e_start="13293" e_stop="13168" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11786" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11660" e_stop="11554" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11465" e_stop="11035" e_length="431"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="10353" e_stop="9430" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14474" stop="14448"/>
              <exon start="13293" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13292" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13291" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13282" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13270" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13267" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13258" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11843" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11833" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11830" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11625" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="11035"/>
              <exon start="10353" stop="9975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11403" stop="11035"/>
              <exon start="10353" stop="9809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11375" stop="11035"/>
              <exon start="10353" stop="10212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11316" stop="11035"/>
              <exon start="10353" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="11035"/>
              <exon start="10353" stop="9927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11132" stop="11035"/>
              <exon start="10353" stop="9955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11118" stop="11035"/>
              <exon start="10353" stop="9939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11058" stop="11035"/>
              <exon start="10353" stop="9512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10353" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10324" stop="9655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="9703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="9430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTGTGGTTTATATGACGGAGTGAG : AAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> K  L  W  F  I  *  R  S  E  :  K  F  P  A  *  I  P  R  I  F  *  K  K  V  P  S  L  Q  P  Q  F  *  K  T  P  F  F  P  N  F  K  S  F  F  K  N  L  L  V  N  I  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </first_frame>
            <second_frame>  N  C  G  L  Y  D  G  V  R :   N  S  R  R  K  S  Q  E  F  F  E  K  K  F  R  L  Y  N  P  N  S  K  K  P  P  F  S  Q  I  S  N  L  S  L  K  I  F  L  L  T  S  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </second_frame>
            <third_frame>   I  V  V  Y  M  T  E  *   : E  I  P  G  V  N  P  K  N  F  L  K  K  S  S  V  F  T  T  P  I  L  K  N  P  L  F  P  K  F  Q  I  F  L  *  K  S  S  C  *  H  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14473" stop="14448"/>
                    <exon start="13293" stop="13168"/>
                    <exon start="11854" stop="11786"/>
                    <exon start="11660" stop="11554"/>
                    <exon start="11465" stop="11035"/>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1392</number_coding_nucleotides>
                  <number_encoded_amino_acids>464</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCGLYDGVRNSRRKSQEFFEKKFRLYNPNSKKPPFSQISNLSLKIFLLTSSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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        </AGS_line>
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          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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          </exon>
        </exon-intron_info>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAA : CACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTAT</gDNA_template>
            <first_frame> S  L  S  H  N  I  V  F  L  N  S  R  R  K  S  Q  E  F  F  E  K  K  F  R  L  Y  N  P  N  S  K  K  P  P  F  S  Q  I  S  N  L  S  L  K  I  F  L  L  T  S  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N :   T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y </first_frame>
            <second_frame>  L  F  H  T  I  L  S  S  *  I  P  G  V  N  P  K  N  F  L  K  K  S  S  V  F  T  T  P  I  L  K  N  P  L  F  P  K  F  Q  I  F  L  *  K  S  S  C  *  H  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S   : T  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T   </second_frame>
            <third_frame>   S  F  T  Q  Y  C  L  P  K  F  P  A  *  I  P  R  I  F  *  K  K  V  P  S  L  Q  P  Q  F  *  K  T  P  F  F  P  N  F  K  S  F  F  K  N  L  L  V  N  I  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  :  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13319" stop="13168"/>
                    <exon start="11854" stop="11786"/>
                    <exon start="11660" stop="11554"/>
                    <exon start="11465" stop="11035"/>
                    <exon start="10353" stop="10100"/>
                    <exon start="9955" stop="9898"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSHNIVFLNSRRKSQEFFEKKFRLYNPNSKKPPFSQISNLSLKIFLLTSSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTDLLARGIDVQQVSLVINY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="14965" e_stop="14946"/>
            <exon e_start="13288" e_stop="13168"/>
            <exon e_start="11854" e_stop="11786"/>
            <exon e_start="11660" e_stop="11554"/>
            <exon e_start="11465" e_stop="11035"/>
            <exon e_start="10353" e_stop="9430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.793"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="14965" e_stop="14946" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="14945" i_stop="13289" i_length="1657"/>
          </intron>
          <exon e_serial="2" e_score="0.793">
            <gDNA_exon_boundary e_start="13288" e_stop="13168" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13167" i_stop="11855" i_length="1313"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11786" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11660" e_stop="11554" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11465" e_stop="11035" e_length="431"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="10353" e_stop="9430" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14965" stop="14946"/>
              <exon start="13288" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13283" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13282" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13278" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13275" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13272" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13270" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13267" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13259" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13258" stop="13168"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11843" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11833" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11830" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11625" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="11035"/>
              <exon start="10353" stop="9975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11403" stop="11035"/>
              <exon start="10353" stop="9809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11375" stop="11035"/>
              <exon start="10353" stop="10212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11316" stop="11035"/>
              <exon start="10353" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="11035"/>
              <exon start="10353" stop="9927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11132" stop="11035"/>
              <exon start="10353" stop="9955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11118" stop="11035"/>
              <exon start="10353" stop="9939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11058" stop="11035"/>
              <exon start="10353" stop="9512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10353" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10324" stop="9655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="9703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="9430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACTCCAGACTTTGTGGTT : CCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAACATCAAG : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> V  L  Q  T  L  W  F :   P  A  *  I  P  R  I  F  *  K  K  V  P  S  L  Q  P  Q  F  *  K  T  P  F  F  P  N  F  K  S  F  F  K  N  L  L  V  N  I  K  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </first_frame>
            <second_frame>  Y  S  R  L  C  G   : S  R  R  K  S  Q  E  F  F  E  K  K  F  R  L  Y  N  P  N  S  K  K  P  P  F  S  Q  I  S  N  L  S  L  K  I  F  L  L  T  S  S :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </second_frame>
            <third_frame>   T  P  D  F  V  V  :  P  G  V  N  P  K  N  F  L  K  K  S  S  V  F  T  T  P  I  L  K  N  P  L  F  P  K  F  Q  I  F  L  *  K  S  S  C  *  H  Q   : V  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14964" stop="14946"/>
                    <exon start="13288" stop="13168"/>
                    <exon start="11854" stop="11786"/>
                    <exon start="11660" stop="11554"/>
                    <exon start="11465" stop="11035"/>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSRLCGSRRKSQEFFEKKFRLYNPNSKKPPFSQISNLSLKIFLLTSSMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="13324" e_stop="13174"/>
            <exon e_start="11854" e_stop="11786"/>
            <exon e_start="11660" e_stop="11554"/>
            <exon e_start="11465" e_stop="11035"/>
            <exon e_start="10353" e_stop="9430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.788"/>
          <exon-intron don_prob="0.994" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.339" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.788">
            <gDNA_exon_boundary e_start="13324" e_stop="13174" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13173" i_stop="11855" i_length="1319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11854" e_stop="11786" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.845">
            <gDNA_intron_boundary i_start="11785" i_stop="11661" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11660" e_stop="11554" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.339">
            <gDNA_intron_boundary i_start="11553" i_stop="11466" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11465" e_stop="11035" e_length="431"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="10353" e_stop="9430" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13324" stop="13174"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13269" stop="13174"/>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11854" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11843" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11833" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11830" stop="11786"/>
              <exon start="11660" stop="11554"/>
              <exon start="11465" stop="11193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11625" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11617" stop="11554"/>
              <exon start="11465" stop="11035"/>
              <exon start="10353" stop="10144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="11035"/>
              <exon start="10353" stop="9975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11403" stop="11035"/>
              <exon start="10353" stop="9809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11375" stop="11035"/>
              <exon start="10353" stop="10212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11316" stop="11035"/>
              <exon start="10353" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="11035"/>
              <exon start="10353" stop="9927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11132" stop="11035"/>
              <exon start="10353" stop="9955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11118" stop="11035"/>
              <exon start="10353" stop="9939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11058" stop="11035"/>
              <exon start="10353" stop="9512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10353" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10324" stop="9655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="9703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="9430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACTCTCTTTCACACAATATTGTCTTCCTAAATTCCCGGCGTAAATCCCAAGAATTTTTTGAAAAAAAGTTCCGTCTTTACAACCCCAATTCTAAAAAACCCCCTTTTTCCCAAATTTCAAATCTTTCTTTAAAAATCTTCTTGTTAAC : TATGGCAGGCTCGGCACCAGAGGGTTCTCAGTTTGATGCTCGTCAATTCGATGCGAAAATGACGGAGCT : ACTTGGTACTGAACAACAAGATTTTTTCACATCATATGATGAGGTTTATGACAGCTTTGATGCCATGGGTTTGCAAGAAAACCTTCTGAGAGGCATCTATGCCTATG : GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> K  T  L  F  H  T  I  L  S  S  *  I  P  G  V  N  P  K  N  F  L  K  K  S  S  V  F  T  T  P  I  L  K  N  P  L  F  P  K  F  Q  I  F  L  *  K  S  S  C  *   : L  W  Q  A  R  H  Q  R  V  L  S  L  M  L  V  N  S  M  R  K  *  R  S   : Y  L  V  L  N  N  K  I  F  S  H  H  M  M  R  F  M  T  A  L  M  P  W  V  C  K  K  T  F  *  E  A  S  M  P  M  :  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </first_frame>
            <second_frame>  K  L  S  F  T  Q  Y  C  L  P  K  F  P  A  *  I  P  R  I  F  *  K  K  V  P  S  L  Q  P  Q  F  *  K  T  P  F  F  P  N  F  K  S  F  F  K  N  L  L  V  N  :  Y  G  R  L  G  T  R  G  F  S  V  *  C  S  S  I  R  C  E  N  D  G  A  :  T  W  Y  *  T  T  R  F  F  H  I  I  *  *  G  L  *  Q  L  *  C  H  G  F  A  R  K  P  S  E  R  H  L  C  L  W :   F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </second_frame>
            <third_frame>   N  S  L  S  H  N  I  V  F  L  N  S  R  R  K  S  Q  E  F  F  E  K  K  F  R  L  Y  N  P  N  S  K  K  P  P  F  S  Q  I  S  N  L  S  L  K  I  F  L  L  T :   M  A  G  S  A  P  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  D  F  F  T  S  Y  D  E  V  Y  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13322" stop="13174"/>
                    <exon start="11854" stop="11786"/>
                    <exon start="11660" stop="11554"/>
                    <exon start="11465" stop="11035"/>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1389</number_coding_nucleotides>
                  <number_encoded_amino_acids>463</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSHNIVFLNSRRKSQEFFEKKFRLYNPNSKKPPFSQISNLSLKIFLLTMAGSAPEGSQFDARQFDAKMTELLGTEQQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="11468" e_stop="11035"/>
            <exon e_start="10353" e_stop="9430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.589" e_score="0.995"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="11468" e_stop="11035" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.589">
            <gDNA_intron_boundary i_start="11034" i_stop="10354" i_length="681"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="10353" e_stop="9430" e_length="924"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11468" stop="11035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11461" stop="11035"/>
              <exon start="10353" stop="9868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11408" stop="11035"/>
              <exon start="10353" stop="9975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11403" stop="11035"/>
              <exon start="10353" stop="9809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11375" stop="11035"/>
              <exon start="10353" stop="10212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11316" stop="11035"/>
              <exon start="10353" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11184" stop="11035"/>
              <exon start="10353" stop="9927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11132" stop="11035"/>
              <exon start="10353" stop="9955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11118" stop="11035"/>
              <exon start="10353" stop="9939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11058" stop="11035"/>
              <exon start="10353" stop="9512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10353" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10324" stop="9655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="9703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="9430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGCATCGTTCCCTTTTGCAAGGGCCTTGATGTTATCCAGCAGGCACAATCGGGAACTGGAAAGACGGCAACTTTCTGCTCTGGAGTTCTCCAGCAACTTGATTACAGTTTAGTTGAATGTCAGGCTCTTGTTCTTGCACCAACCCGTGAGCTGGCACAACAGATTGAGAAGGTTATGCGTGCGCTCGGAGACTATCTGGGCGTGAAGGTTCATGCGTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGTATCCTTCAGAGTGGTGTTCATGTGGTAGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> K  V  L  R  S  H  Q  L  F  S  K  G  A  S  F  P  F  A  R  A  L  M  L  S  S  R  H  N  R  E  L  E  R  R  Q  L  S  A  L  E  F  S  S  N  L  I  T  V  *  L  N  V  R  L  L  F  L  H  Q  P  V  S  W  H  N  R  L  R  R  L  C  V  R  S  E  T  I  W  A  *  R  F  M  R  V  L  G  V  P  V  S  V  R  I  S  V  S  F  R  V  V  F  M  W  *  L  V  L  Q  A  V  S  L  T  C  C  A  D  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  M  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </first_frame>
            <second_frame>  R  F  *  E  A  I  S  Y  S  A  K  G  H  R  S  L  L  Q  G  P  *  C  Y  P  A  G  T  I  G  N  W  K  D  G  N  F  L  L  W  S  S  P  A  T  *  L  Q  F  S  *  M  S  G  S  C  S  C  T  N  P  *  A  G  T  T  D  *  E  G  Y  A  C  A  R  R  L  S  G  R  E  G  S  C  V  C  W  G  Y  Q  C  P  *  G  S  A  Y  P  S  E  W  C  S  C  G  S  W  Y  S  R  P  C  L  *  H  V  A  Q  T  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  *  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </second_frame>
            <third_frame>   G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  V  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11466" stop="11035"/>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="19367" e_stop="19335"/>
            <exon e_start="18666" e_stop="18656"/>
            <exon e_start="17904" e_stop="17844"/>
            <exon e_start="17667" e_stop="17561"/>
            <exon e_start="17472" e_stop="17042"/>
            <exon e_start="15897" e_stop="15005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.576"/>
          <exon-intron don_prob="0.995" acc_prob="0.396" e_score="0.636"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.914"/>
          <exon-intron don_prob="0.719" acc_prob="0.033" e_score="0.925"/>
          <exon-intron don_prob="0.981" acc_prob="0.807" e_score="0.988"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.576">
            <gDNA_exon_boundary e_start="19367" e_stop="19335" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19334" i_stop="18667" i_length="668"/>
          </intron>
          <exon e_serial="2" e_score="0.636">
            <gDNA_exon_boundary e_start="18666" e_stop="18656" e_length="11"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.396">
            <gDNA_intron_boundary i_start="18655" i_stop="17905" i_length="751"/>
          </intron>
          <exon e_serial="3" e_score="0.914">
            <gDNA_exon_boundary e_start="17904" e_stop="17844" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17843" i_stop="17668" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="0.925">
            <gDNA_exon_boundary e_start="17667" e_stop="17561" e_length="107"/>
          </exon>
          <intron i_serial="4" don_prob="0.719" acc_prob="0.033">
            <gDNA_intron_boundary i_start="17560" i_stop="17473" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="17472" e_stop="17042" e_length="431"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.807">
            <gDNA_intron_boundary i_start="17041" i_stop="15898" i_length="1144"/>
          </intron>
          <exon e_serial="6" e_score="0.954">
            <gDNA_exon_boundary e_start="15897" e_stop="15005" e_length="893"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19367" stop="19335"/>
              <exon start="18666" stop="18656"/>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17904" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17901" stop="17844"/>
              <exon start="17667" stop="17561"/>
              <exon start="17472" stop="17212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17665" stop="17561"/>
              <exon start="17472" stop="17216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17624" stop="17561"/>
              <exon start="17472" stop="17042"/>
              <exon start="15897" stop="15790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17454" stop="17042"/>
              <exon start="15897" stop="15515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17427" stop="17042"/>
              <exon start="15897" stop="15683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17414" stop="17042"/>
              <exon start="15897" stop="15753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17314" stop="17042"/>
              <exon start="15897" stop="15614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17306" stop="17042"/>
              <exon start="15897" stop="15437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17153" stop="17042"/>
              <exon start="15897" stop="15280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17077" stop="17042"/>
              <exon start="15897" stop="15237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17073" stop="17042"/>
              <exon start="15897" stop="15397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15895" stop="15491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15877" stop="15299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15868" stop="15081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15691" stop="15007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15467" stop="15005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15430" stop="15008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTCTTTGACAAACTTCAAATCACCATCAA : GAGTCATGCAG : TCATGGCAGCAGAAGGTTCTCAGTTTGATGCTCGTCAATTCGATGCAAAAATGACAGAACT : GCTTGGTACTGAACAACAGGAATTCTTCACATCATATGATGAGGTTCACGACAGTTTTGATGCCATGGGTTTGCAAGAAAATCTCCTGAGGGGCATCTATGCCTATG : GTTTTGAGAAGCCATCTGCTATTCAGCAAAGGGGCATTGTTCCTTTTTGCAAGGGCCTTGATGTCATCCAGCAGGCACAATCTGGTACTGGAAAGACGGCAACTTTCTGCTCTGGAATTCTCCAGCAGCTTGATTACAGTTTAGTTGAGTGTCAGGCTCTGGTTCTTGCACCAACCCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTTGGTGACTACCTGGGTGTGAAGGTTCATGCTTGTGTTGGGGGTACCAGTGTCCGTGAGGATCAGCGCATCCTTCAGAGCGGTGTTCATGTTGTGGTTGGTACTCCAGGCCGTGTCTTTGACATGTTGCGCAGGCAGTCTCTTCGCCCCGACCACATCAAGATGTTTGTTTTGGATGAAGCTGACGAAATGCTCTCTAGAGGTTTCAAGGATCAG : ATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</gDNA_template>
            <first_frame> I  F  L  *  Q  T  S  N  H  H  Q  :  E  S  C  S :   H  G  S  R  R  F  S  V  *  C  S  S  I  R  C  K  N  D  R  T  :  A  W  Y  *  T  T  G  I  L  H  I  I  *  *  G  S  R  Q  F  *  C  H  G  F  A  R  K  S  P  E  G  H  L  C  L  W :   F  *  E  A  I  C  Y  S  A  K  G  H  C  S  F  L  Q  G  P  *  C  H  P  A  G  T  I  W  Y  W  K  D  G  N  F  L  L  W  N  S  P  A  A  *  L  Q  F  S  *  V  S  G  S  G  S  C  T  N  P  *  A  C  T  T  D  *  E  G  Y  E  S  T  W  *  L  P  G  C  E  G  S  C  L  C  W  G  Y  Q  C  P  *  G  S  A  H  P  S  E  R  C  S  C  C  G  W  Y  S  R  P  C  L  *  H  V  A  Q  A  V  S  S  P  R  P  H  Q  D  V  C  F  G  *  S  *  R  N  A  L  *  R  F  Q  G  S   : D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H  P  E  R  H  L  C  *  H  *  A  K  G  *  L  A  H  *  *  N  A  W  T  *  P  H  S  I  C  N  S  W  R  H  G  S  E  H  K  R  Y  H  H  E  G  V  P  I  W  L  I  S  C  A  Y  H  N  R  S  P  C  S  W  Y  *  C  P  T  S  L  P  C  Y  *  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  H  Q  G  *  *  K  D  A  F  *  H  T  E  V  L  Q  R  R  N  *  G  A  P  S  Q  C  C  *  S  P  L  R  R  F  L  V  Y  L  F  L  D  L  V  S  V  C  T  R  L  G  I  R  K  C  W  *  P  W  F  A  T  A  P  V  P  F  L  I  Q  M  K  P  F  F  F  F  C  K  F  C  L  V  C  H  F  I  P  L  K  Y  P  N  N  F  V  F  G  V  V  *  I  V  *  L  I  Y  F  P  M  E  G  K  A  F  S  W  I </first_frame>
            <second_frame>  S  F  F  D  K  L  Q  I  T  I  K :   S  H  A   : V  M  A  A  E  G  S  Q  F  D  A  R  Q  F  D  A  K  M  T  E  L :   L  G  T  E  Q  Q  E  F  F  T  S  Y  D  E  V  H  D  S  F  D  A  M  G  L  Q  E  N  L  L  R  G  I  Y  A  Y   : G  F  E  K  P  S  A  I  Q  Q  R  G  I  V  P  F  C  K  G  L  D  V  I  Q  Q  A  Q  S  G  T  G  K  T  A  T  F  C  S  G  I  L  Q  Q  L  D  Y  S  L  V  E  C  Q  A  L  V  L  A  P  T  R  E  L  A  Q  Q  I  E  K  V  M  R  A  L  G  D  Y  L  G  V  K  V  H  A  C  V  G  G  T  S  V  R  E  D  Q  R  I  L  Q  S  G  V  H  V  V  V  G  T  P  G  R  V  F  D  M  L  R  R  Q  S  L  R  P  D  H  I  K  M  F  V  L  D  E  A  D  E  M  L  S  R  G  F  K  D  Q  :  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  D  F  W  Y  I  Y  S  *  I  *  Y  Q  F  V  L  D  L  E  L  G  N  A  G  S  H  G  L  P  Q  H  Q  F  L  S  *  F  K  *  N  L  F  F  F  F  A  N  F  V  W  F  V  I  L  Y  L  *  S  I  Q  I  T  L  Y  L  V  L  F  E  L  F  N  *  S  I  S  L  W  K  V  K  L  L  V  G   </second_frame>
            <third_frame>   L  S  L  T  N  F  K  S  P  S   : R  V  M  Q  :  S  W  Q  Q  K  V  L  S  L  M  L  V  N  S  M  Q  K  *  Q  N   : C  L  V  L  N  N  R  N  S  S  H  H  M  M  R  F  T  T  V  L  M  P  W  V  C  K  K  I  S  *  G  A  S  M  P  M  :  V  L  R  S  H  L  L  F  S  K  G  A  L  F  L  F  A  R  A  L  M  S  S  S  R  H  N  L  V  L  E  R  R  Q  L  S  A  L  E  F  S  S  S  L  I  T  V  *  L  S  V  R  L  W  F  L  H  Q  P  V  S  L  H  N  R  L  R  R  L  *  E  H  L  V  T  T  W  V  *  R  F  M  L  V  L  G  V  P  V  S  V  R  I  S  A  S  F  R  A  V  F  M  L  W  L  V  L  Q  A  V  S  L  T  C  C  A  G  S  L  F  A  P  T  T  S  R  C  L  F  W  M  K  L  T  K  C  S  L  E  V  S  R  I  R :   F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P  R  A  S  S  L  L  T  L  G  E  R  L  T  G  S  L  I  K  C  V  D  V  T  T  Q  Y  L  Q  L  M  E  T  W  I  R  T  Q  E  I  S  S  *  G  S  S  D  L  A  H  L  V  C  L  S  Q  P  I  S  L  L  V  V  L  M  S  N  K  S  P  L  L  L  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  S  P  R  M  M  K  G  C  F  L  T  Y  R  S  F  T  T  S  *  L  R  S  S  Q  P  M  L  L  I  S  S  K  A  I  F  G  I  F  I  L  R  F  S  I  S  L  Y  *  T  W  N  *  E  M  L  V  A  M  V  C  H  S  T  S  S  F  P  D  S  N  E  T  F  F  F  F  L  Q  I  L  F  G  L  S  F  Y  T  F  K  V  S  K  *  L  C  I  W  C  C  L  N  C  L  I  D  L  F  P  Y  G  R  *  S  F  *  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19366" stop="19335"/>
                    <exon start="18666" stop="18656"/>
                    <exon start="17904" stop="17844"/>
                    <exon start="17667" stop="17561"/>
                    <exon start="17472" stop="17042"/>
                    <exon start="15897" stop="15262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFDKLQITIKSHAVMAAEGSQFDARQFDAKMTELLGTEQQEFFTSYDEVHDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="10354" e_stop="9430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="10354" e_stop="9430" e_length="925"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10354" stop="9539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10353" stop="9930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10324" stop="9655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10308" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10216" stop="9630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10172" stop="9703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10164" stop="9761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418814" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9886" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="9430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTATGATATATTCCAGCTTTTGCCACCAAAGATCCAAGTGGGTGTTTTCTCTGCTACAATGCCACCAGAGGCTCTTGAGATTACTAGAAAATTCATGAACAAGCCAGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAATTCTATGTCAACGTCGATAAGGAAGAGTGGAAACTTGAAACACTTTGTGATCTTTACGAGACCTTGGCCATCACCCAGAGTGTCATCTTTGTCAACACCAGGCGAAAGGTTGATTGGCTCACTGACAAAATGCGTGGTCGTGATCACACAGTATCTGCAACTCACGGAGACATGGATCAGAACACTAGGGATATCATTATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACCACCGATCTCCTTGCTCGTGGTATTGACGTCCAACAAGTCTCCCTTGTCATCAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTTACCAAGGATGATGAAAGGATGCTTTTTGACATTCAAAAGTTTTACAACGTCGTAATCGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTTTGAGGTGGTTTTGGCTCTGTGAGGGGGAATTGTTCCTTCCCTACAAGTAGTAGTCTAATATATTTATTCAGAGTGAACAACTGCAAATTTTGTCTGGTTTTTGTGTTATTTTGTTTTTGGAAGTGTCCAAATAACTTTGGATTTGGTGGTTGTTTTGAATTGTTTATTTGAACTATTTTTCTATGAATGTTAGGCTTTTAGTTAATGTTTTCTAATGTTTGATGCTATATTTATGTCCCACTGTTTCTTGCTCAATCAATCAAAGATTCATGTTAGGTTAGGTCCTTCAAG</gDNA_template>
            <first_frame> D  L  *  Y  I  P  A  F  A  T  K  D  P  S  G  C  F  L  C  Y  N  A  T  R  G  S  *  D  Y  *  K  I  H  E  Q  A  S  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  I  L  C  Q  R  R  *  G  R  V  E  T  *  N  T  L  *  S  L  R  D  L  G  H  H  P  E  C  H  L  C  Q  H  Q  A  K  G  *  L  A  H  *  Q  N  A  W  S  *  S  H  S  I  C  N  S  R  R  H  G  S  E  H  *  G  Y  H  Y  E  G  V  P  I  W  L  I  S  C  A  Y  H  H  R  S  P  C  S  W  Y  *  R  P  T  S  L  P  C  H  Q  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  Y  Q  G  *  *  K  D  A  F  *  H  S  K  V  L  Q  R  R  N  R  G  A  P  S  Q  C  C  *  S  P  L  R  W  F  W  L  C  E  G  E  L  F  L  P  Y  K  *  *  S  N  I  F  I  Q  S  E  Q  L  Q  I  L  S  G  F  C  V  I  L  F  L  E  V  S  K  *  L  W  I  W  W  L  F  *  I  V  Y  L  N  Y  F  S  M  N  V  R  L  L  V  N  V  F  *  C  L  M  L  Y  L  C  P  T  V  S  C  S  I  N  Q  R  F  M  L  G  *  V  L  Q  </first_frame>
            <second_frame>  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  G  F  G  S  V  R  G  N  C  S  F  P  T  S  S  S  L  I  Y  L  F  R  V  N  N  C  K  F  C  L  V  F  V  L  F  C  F  W  K  C  P  N  N  F  G  F  G  G  C  F  E  L  F  I  *  T  I  F  L  *  M  L  G  F  *  L  M  F  S  N  V  *  C  Y  I  Y  V  P  L  F  L  A  Q  S  I  K  D  S  C  *  V  R  S  F  K </second_frame>
            <third_frame>   F  M  I  Y  S  S  F  C  H  Q  R  S  K  W  V  F  S  L  L  Q  C  H  Q  R  L  L  R  L  L  E  N  S  *  T  S  Q  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  N  S  M  S  T  S  I  R  K  S  G  N  L  K  H  F  V  I  F  T  R  P  W  P  S  P  R  V  S  S  L  S  T  P  G  E  R  L  I  G  S  L  T  K  C  V  V  V  I  T  Q  Y  L  Q  L  T  E  T  W  I  R  T  L  G  I  S  L  *  G  S  S  D  L  A  H  L  V  C  L  S  P  P  I  S  L  L  V  V  L  T  S  N  K  S  P  L  S  S  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  L  P  R  M  M  K  G  C  F  L  T  F  K  S  F  T  T  S  *  S  R  S  S  Q  P  M  L  L  I  S  F  E  V  V  L  A  L  *  G  G  I  V  P  S  L  Q  V  V  V  *  Y  I  Y  S  E  *  T  T  A  N  F  V  W  F  L  C  Y  F  V  F  G  S  V  Q  I  T  L  D  L  V  V  V  L  N  C  L  F  E  L  F  F  Y  E  C  *  A  F  S  *  C  F  L  M  F  D  A  I  F  M  S  H  C  F  L  L  N  Q  S  K  I  H  V  R  L  G  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10353" stop="9718"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="12">
          <exon_coordinates>
            <exon e_start="16112" e_stop="15005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="16112" e_stop="15005" e_length="1108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16112" stop="15663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16104" stop="15693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16104" stop="15727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15895" stop="15491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15877" stop="15299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15868" stop="15081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15800" stop="15382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15691" stop="15007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15467" stop="15005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15430" stop="15008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="12" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTGTAGGTCTCTCTTTCTTTTATAATTTTCAATTTGCTTGACAATATATGCCAGTTATTGATCAGCTTGTTGGCGAGTCCTCCCTCCCCCCAAATTGTAGCTTTGATGTGCTCTAACTAACCTTTGTCAACAATTGCTGCCACATCTTTCTGGTTTATTCCTCCTTTGTTTTGATGATTTAACTTTTCCCATGACACAAATATTATTTTCCAGATTTATGATATATTCCAGCTTTTGCCACCAAAAATCCAAGTGGGTGTTTTCTCTGCGACTATGCCACCAGAGGCTCTTGAGATTACTAGAAAGTTCATGAACAAGCCTGTGAGAATTCTCGTGAAGCGTGATGAGCTCACTCTTGAAGGTATTAAGCAGTTTTATGTCAATGTCGATAAGGAAGAGTGGAAGCTTGAAACACTATGTGATCTTTACGAGACCTTGGCCATCACCCAGAGCGTCATCTTTGTTAACACTAGGCGAAAGGTTGACTGGCTCACTGATAAAATGCGTGGACGTGACCACACAGTATCTGCAACTCATGGAGACATGGATCAGAACACAAGAGATATCATCATGAGGGAGTTCCGATCTGGCTCATCTCGTGTGCTTATCACAACCGATCTCCTTGCTCGTGGTATTGATGTCCAACAAGTCTCCCTTGTTATTAACTATGACCTGCCAACTCAACCAGAAAACTACCTGCATCGTATTGGTCGTAGTGGACGATTTGGAAGGAAGGGTGTTGCTATCAACTTTGTCACCAAGGATGATGAAAGGATGCTTTTTGACATACAGAAGTTTTACAACGTCGTAATTGAGGAGCTCCCAGCCAATGTTGCTGATCTCCTCTAAGGCGATTTTTGGTATATTTATTCTTAGATTTAGTATCAGTTTGTACTAGACTTGGAATTAGGAAATGCTGGTAGCCATGGTTTGCCACAGCACCAGTTCCTTTCCTGATTCAAATGAAACCTTTTTTTTTTTTTTGCAAATTTTGTTTGGTTTGTCATTTTATACCTTTAAAGTATCCAAATAACTTTGTATTTGGTGTTGTTTGAATTGTTTAATTGATCTATTTCCCTATGGAAGGTAAAGCTTTTAGTTGGATT</gDNA_template>
            <first_frame> M  C  R  S  L  F  L  L  *  F  S  I  C  L  T  I  Y  A  S  Y  *  S  A  C  W  R  V  L  P  P  P  K  L  *  L  *  C  A  L  T  N  L  C  Q  Q  L  L  P  H  L  S  G  L  F  L  L  C  F  D  D  L  T  F  P  M  T  Q  I  L  F  S  R  F  M  I  Y  S  S  F  C  H  Q  K  S  K  W  V  F  S  L  R  L  C  H  Q  R  L  L  R  L  L  E  S  S  *  T  S  L  *  E  F  S  *  S  V  M  S  S  L  L  K  V  L  S  S  F  M  S  M  S  I  R  K  S  G  S  L  K  H  Y  V  I  F  T  R  P  W  P  S  P  R  A  S  S  L  L  T  L  G  E  R  L  T  G  S  L  I  K  C  V  D  V  T  T  Q  Y  L  Q  L  M  E  T  W  I  R  T  Q  E  I  S  S  *  G  S  S  D  L  A  H  L  V  C  L  S  Q  P  I  S  L  L  V  V  L  M  S  N  K  S  P  L  L  L  T  M  T  C  Q  L  N  Q  K  T  T  C  I  V  L  V  V  V  D  D  L  E  G  R  V  L  L  S  T  L  S  P  R  M  M  K  G  C  F  L  T  Y  R  S  F  T  T  S  *  L  R  S  S  Q  P  M  L  L  I  S  S  K  A  I  F  G  I  F  I  L  R  F  S  I  S  L  Y  *  T  W  N  *  E  M  L  V  A  M  V  C  H  S  T  S  S  F  P  D  S  N  E  T  F  F  F  F  L  Q  I  L  F  G  L  S  F  Y  T  F  K  V  S  K  *  L  C  I  W  C  C  L  N  C  L  I  D  L  F  P  Y  G  R  *  S  F  *  L  D  </first_frame>
            <second_frame>  C  V  G  L  S  F  F  Y  N  F  Q  F  A  *  Q  Y  M  P  V  I  D  Q  L  V  G  E  S  S  L  P  P  N  C  S  F  D  V  L  *  L  T  F  V  N  N  C  C  H  I  F  L  V  Y  S  S  F  V  L  M  I  *  L  F  P  *  H  K  Y  Y  F  P  D  L  *  Y  I  P  A  F  A  T  K  N  P  S  G  C  F  L  C  D  Y  A  T  R  G  S  *  D  Y  *  K  V  H  E  Q  A  C  E  N  S  R  E  A  *  *  A  H  S  *  R  Y  *  A  V  L  C  Q  C  R  *  G  R  V  E  A  *  N  T  M  *  S  L  R  D  L  G  H  H  P  E  R  H  L  C  *  H  *  A  K  G  *  L  A  H  *  *  N  A  W  T  *  P  H  S  I  C  N  S  W  R  H  G  S  E  H  K  R  Y  H  H  E  G  V  P  I  W  L  I  S  C  A  Y  H  N  R  S  P  C  S  W  Y  *  C  P  T  S  L  P  C  Y  *  L  *  P  A  N  S  T  R  K  L  P  A  S  Y  W  S  *  W  T  I  W  K  E  G  C  C  Y  Q  L  C  H  Q  G  *  *  K  D  A  F  *  H  T  E  V  L  Q  R  R  N  *  G  A  P  S  Q  C  C  *  S  P  L  R  R  F  L  V  Y  L  F  L  D  L  V  S  V  C  T  R  L  G  I  R  K  C  W  *  P  W  F  A  T  A  P  V  P  F  L  I  Q  M  K  P  F  F  F  F  C  K  F  C  L  V  C  H  F  I  P  L  K  Y  P  N  N  F  V  F  G  V  V  *  I  V  *  L  I  Y  F  P  M  E  G  K  A  F  S  W  I </second_frame>
            <third_frame>   V  *  V  S  L  S  F  I  I  F  N  L  L  D  N  I  C  Q  L  L  I  S  L  L  A  S  P  P  S  P  Q  I  V  A  L  M  C  S  N  *  P  L  S  T  I  A  A  T  S  F  W  F  I  P  P  L  F  *  *  F  N  F  S  H  D  T  N  I  I  F  Q  I  Y  D  I  F  Q  L  L  P  P  K  I  Q  V  G  V  F  S  A  T  M  P  P  E  A  L  E  I  T  R  K  F  M  N  K  P  V  R  I  L  V  K  R  D  E  L  T  L  E  G  I  K  Q  F  Y  V  N  V  D  K  E  E  W  K  L  E  T  L  C  D  L  Y  E  T  L  A  I  T  Q  S  V  I  F  V  N  T  R  R  K  V  D  W  L  T  D  K  M  R  G  R  D  H  T  V  S  A  T  H  G  D  M  D  Q  N  T  R  D  I  I  M  R  E  F  R  S  G  S  S  R  V  L  I  T  T  D  L  L  A  R  G  I  D  V  Q  Q  V  S  L  V  I  N  Y  D  L  P  T  Q  P  E  N  Y  L  H  R  I  G  R  S  G  R  F  G  R  K  G  V  A  I  N  F  V  T  K  D  D  E  R  M  L  F  D  I  Q  K  F  Y  N  V  V  I  E  E  L  P  A  N  V  A  D  L  L  *  G  D  F  W  Y  I  Y  S  *  I  *  Y  Q  F  V  L  D  L  E  L  G  N  A  G  S  H  G  L  P  Q  H  Q  F  L  S  *  F  K  *  N  L  F  F  F  F  A  N  F  V  W  F  V  I  L  Y  L  *  S  I  Q  I  T  L  Y  L  V  L  F  E  L  F  N  *  S  I  S  L  W  K  V  K  L  L  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="12" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15933" stop="15262"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNFSHDTNIIFQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9557" PGL_stop="10340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9557" e_stop="10340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="9557" e_stop="10340" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9557" stop="10340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAATTCAAAACAACCACCAAATCCAAAGTTATTTGGACACTTCCAAAAACAAAATAACACAAAAACCAGACAAAATTTGCAGTTGTTCACTCTGAATAAATATATTAGACTACTACTTGTAGGGAAGGAACAATTCCCCCTCACAGAGCCAAAACCACCTCAAAGGAGATCAGCAACATTGGCTGGGAGCTCCTCGATTACGACGTTGTAAAACTTTTGAATGTCAAAAAGCATCCTTTCATCATCCTTGGTAACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTGATGACAAGGGAGACTTGTTGGACGTCAATACCACGAGCAAGGAGATCGGTGGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATAATGATATCCCTAGTGTTCTGATCCATGTCTCCGTGAGTTGCAGATACTGTGTGATCACGACCACGCATTTTGTCAGTGAGCCAATCAACCTTTCGCCTGGTGTTGACAAAGATGACACTCTGGGTGATGGCCAAGGTCTCGTAAAGATCACAAAGTGTTTCAAGTTTCCACTCTTCCTTATCGACGTTGACATAGAATTGCTTAATACCTTCAAGAGTGAGCTCATCACGCTTCACGAGAATTCTCACTGGCTTGTTCATGAATTTTCTAGTAATCTCAAGAGCCTCTGGTGGCATTGTAGCAGAGAAAACACCCACTTGGATCTTTGGTGGCAAAAGCTGGA</gDNA_template>
            <first_frame> N  N  S  K  Q  P  P  N  P  K  L  F  G  H  F  Q  K  Q  N  N  T  K  T  R  Q  N  L  Q  L  F  T  L  N  K  Y  I  R  L  L  L  V  G  K  E  Q  F  P  L  T  E  P  K  P  P  Q  R  R  S  A  T  L  A  G  S  S  S  I  T  T  L  *  N  F  *  M  S  K  S  I  L  S  S  S  L  V  T  K  L  I  A  T  P  F  L  P  N  R  P  L  R  P  I  R  C  R  *  F  S  G  *  V  G  R  S  *  L  M  T  R  E  T  C  W  T  S  I  P  R  A  R  R  S  V  V  I  S  T  R  D  E  P  D  R  N  S  L  I  M  I  S  L  V  F  *  S  M  S  P  *  V  A  D  T  V  *  S  R  P  R  I  L  S  V  S  Q  S  T  F  R  L  V  L  T  K  M  T  L  W  V  M  A  K  V  S  *  R  S  Q  S  V  S  S  F  H  S  S  L  S  T  L  T  *  N  C  L  I  P  S  R  V  S  S  S  R  F  T  R  I  L  T  G  L  F  M  N  F  L  V  I  S  R  A  S  G  G  I  V  A  E  K  T  P  T  W  I  F  G  G  K  S  W  </first_frame>
            <second_frame>  T  I  Q  N  N  H  Q  I  Q  S  Y  L  D  T  S  K  N  K  I  T  Q  K  P  D  K  I  C  S  C  S  L  *  I  N  I  L  D  Y  Y  L  *  G  R  N  N  S  P  S  Q  S  Q  N  H  L  K  G  D  Q  Q  H  W  L  G  A  P  R  L  R  R  C  K  T  F  E  C  Q  K  A  S  F  H  H  P  W  *  Q  S  *  *  Q  H  P  S  F  Q  I  V  H  Y  D  Q  Y  D  A  G  S  F  L  V  E  L  A  G  H  S  *  *  Q  G  R  L  V  G  R  Q  Y  H  E  Q  G  D  R  W  *  *  A  H  E  M  S  Q  I  G  T  P  S  *  *  Y  P  *  C  S  D  P  C  L  R  E  L  Q  I  L  C  D  H  D  H  A  F  C  Q  *  A  N  Q  P  F  A  W  C  *  Q  R  *  H  S  G  *  W  P  R  S  R  K  D  H  K  V  F  Q  V  S  T  L  P  Y  R  R  *  H  R  I  A  *  Y  L  Q  E  *  A  H  H  A  S  R  E  F  S  L  A  C  S  *  I  F  *  *  S  Q  E  P  L  V  A  L  *  Q  R  K  H  P  L  G  S  L  V  A  K  A  G </second_frame>
            <third_frame>   Q  F  K  T  T  T  K  S  K  V  I  W  T  L  P  K  T  K  *  H  K  N  Q  T  K  F  A  V  V  H  S  E  *  I  Y  *  T  T  T  C  R  E  G  T  I  P  P  H  R  A  K  T  T  S  K  E  I  S  N  I  G  W  E  L  L  D  Y  D  V  V  K  L  L  N  V  K  K  H  P  F  I  I  L  G  N  K  V  D  S  N  T  L  P  S  K  S  S  T  T  T  N  T  M  Q  V  V  F  W  L  S  W  Q  V  I  V  D  D  K  G  D  L  L  D  V  N  T  T  S  K  E  I  G  G  D  K  H  T  R  *  A  R  S  E  L  P  H  N  D  I  P  S  V  L  I  H  V  S  V  S  C  R  Y  C  V  I  T  T  T  H  F  V  S  E  P  I  N  L  S  P  G  V  D  K  D  D  T  L  G  D  G  Q  G  L  V  K  I  T  K  C  F  K  F  P  L  F  L  I  D  V  D  I  E  L  L  N  T  F  K  S  E  L  I  T  L  H  E  N  S  H  W  L  V  H  E  F  S  S  N  L  K  S  L  W  W  H  C  S  R  E  N  T  H  L  D  L  W  W  Q  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9976" stop="10338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARSELPHNDIPSVLIHVSVSCRYCVITTTHFVSEPINLSPGVDKDDTLGDGQGLVKITKCFKFPLFLIDVDIELLNTFKSELITLHENSHWLVHEFSSNLKSLWWHCSRENTHLDLWWQKL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9667" stop="9975"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTTCREGTIPPHRAKTTSKEISNIGWELLDYDVVKLLNVKKHPFIILGNKVDSNTLPSKSSTTTNTMQVVFWLSWQVIVDDKGDLLDVNTTSKEIGGDKHTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="15002" PGL_stop="15626"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15002" e_stop="15626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="15002" e_stop="15626" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15002" stop="15479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15002" stop="15234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15013" stop="15626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15013" stop="15608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562003" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAATCCAACTAAAAGCTTTACCTTCCATAGGGAAATAGATCAATTAAACAATTCAAACAACACCAAATACAAAGTTATTTGGATACTTTAAAGGTATAAAATGACAAACCAAACAAAATTTGCAAAAAAAAAAAAAAGGTTTCATTTGAATCAGGAAAGGAACTGGTGCTGTGGCAAACCATGGCTACCAGCATTTCCTAATTCCAAGTCTAGTACAAACTGATACTAAATCTAAGAATAAATATACCAAAAATCGCCTTAGAGGAGATCAGCAACATTGGCTGGGAGCTCCTCAATTACGACGTTGTAAAACTTCTGTATGTCAAAAAGCATCCTTTCATCATCCTTGGTGACAAAGTTGATAGCAACACCCTTCCTTCCAAATCGTCCACTACGACCAATACGATGCAGGTAGTTTTCTGGTTGAGTTGGCAGGTCATAGTTAATAACAAGGGAGACTTGTTGGACATCAATACCACGAGCAAGGAGATCGGTTGTGATAAGCACACGAGATGAGCCAGATCGGAACTCCCTCATGATGATATCTCTTGTGTTCTGATCCATGTCTCCATGAGTTGCAGATACTGTGTGGTCACGTCCACGCATTTTATCAGTGAGCCAGT</gDNA_template>
            <first_frame> D  N  P  T  K  S  F  T  F  H  R  E  I  D  Q  L  N  N  S  N  N  T  K  Y  K  V  I  W  I  L  *  R  Y  K  M  T  N  Q  T  K  F  A  K  K  K  K  R  F  H  L  N  Q  E  R  N  W  C  C  G  K  P  W  L  P  A  F  P  N  S  K  S  S  T  N  *  Y  *  I  *  E  *  I  Y  Q  K  S  P  *  R  R  S  A  T  L  A  G  S  S  S  I  T  T  L  *  N  F  C  M  S  K  S  I  L  S  S  S  L  V  T  K  L  I  A  T  P  F  L  P  N  R  P  L  R  P  I  R  C  R  *  F  S  G  *  V  G  R  S  *  L  I  T  R  E  T  C  W  T  S  I  P  R  A  R  R  S  V  V  I  S  T  R  D  E  P  D  R  N  S  L  M  M  I  S  L  V  F  *  S  M  S  P  *  V  A  D  T  V  W  S  R  P  R  I  L  S  V  S  Q  </first_frame>
            <second_frame>  I  I  Q  L  K  A  L  P  S  I  G  K  *  I  N  *  T  I  Q  T  T  P  N  T  K  L  F  G  Y  F  K  G  I  K  *  Q  T  K  Q  N  L  Q  K  K  K  K  G  F  I  *  I  R  K  G  T  G  A  V  A  N  H  G  Y  Q  H  F  L  I  P  S  L  V  Q  T  D  T  K  S  K  N  K  Y  T  K  N  R  L  R  G  D  Q  Q  H  W  L  G  A  P  Q  L  R  R  C  K  T  S  V  C  Q  K  A  S  F  H  H  P  W  *  Q  S  *  *  Q  H  P  S  F  Q  I  V  H  Y  D  Q  Y  D  A  G  S  F  L  V  E  L  A  G  H  S  *  *  Q  G  R  L  V  G  H  Q  Y  H  E  Q  G  D  R  L  *  *  A  H  E  M  S  Q  I  G  T  P  S  *  *  Y  L  L  C  S  D  P  C  L  H  E  L  Q  I  L  C  G  H  V  H  A  F  Y  Q  *  A  S </second_frame>
            <third_frame>   *  S  N  *  K  L  Y  L  P  *  G  N  R  S  I  K  Q  F  K  Q  H  Q  I  Q  S  Y  L  D  T  L  K  V  *  N  D  K  P  N  K  I  C  K  K  K  K  K  V  S  F  E  S  G  K  E  L  V  L  W  Q  T  M  A  T  S  I  S  *  F  Q  V  *  Y  K  L  I  L  N  L  R  I  N  I  P  K  I  A  L  E  E  I  S  N  I  G  W  E  L  L  N  Y  D  V  V  K  L  L  Y  V  K  K  H  P  F  I  I  L  G  D  K  V  D  S  N  T  L  P  S  K  S  S  T  T  T  N  T  M  Q  V  V  F  W  L  S  W  Q  V  I  V  N  N  K  G  D  L  L  D  I  N  T  T  S  K  E  I  G  C  D  K  H  T  R  *  A  R  S  E  L  P  H  D  D  I  S  C  V  L  I  H  V  S  M  S  C  R  Y  C  V  V  T  S  T  H  F  I  S  E  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15217" stop="15519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILNLRINIPKIALEEISNIGWELLNYDVVKLLYVKKHPFIILGDKVDSNTLPSKSSTTTNTMQVVFWLSWQVIVNNKGDLLDINTTSKEIGCDKHTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24476" PGL_stop="23119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24476" e_stop="24446"/>
            <exon e_start="23973" e_stop="23545"/>
            <exon e_start="23138" e_stop="23119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.229" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24476" e_stop="24446" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.229" acc_prob="0.820">
            <gDNA_intron_boundary i_start="24445" i_stop="23974" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23973" e_stop="23545" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23544" i_stop="23139" i_length="406"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23138" e_stop="23119" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24476" stop="24446"/>
              <exon start="23973" stop="23545"/>
              <exon start="23138" stop="23119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAAAGAAGCGGTCGTGGCCAACCAAGCG : GCTGATGAGCTTAATAAATGGAAAATTGAAGAAGCTCGCAAGTTCGAACAAGCGCGTTTTGCTGAAGAGGCGGCTCTTGCAATTGCTGAGACCGAAAAGGCGAAATGCAGAGCTGCTATCGAAGCTGCTAAGAAAGCACAAAAGATGGCTGAAATAGAAGCGCAAAGAAGGAAGTATGCAGAGTTGAAAGCTAAGCGAGAGGCAGAAAAAAAGAAACAAGCAATTAATGTTCGATCTCAGAATGATATACGTTATAGGAAGTATACAATAGAAGAGATTGAGGCAGCCACCAAAAAGTTCTCAAATGCACAAAAAATTGGAGAAGGTGGATATGGACCTGTTTTTAAGGGTAAACTAGATCACACACCTGTTGCCATTAAAGTTCTGAGTCCTGATGCTGCACAAGGGAAGAAACAGTTCCAACAAGAG : GTTGAGGTCCTCAGTCTCAT</gDNA_template>
            <first_frame> L  Q  R  S  G  R  G  Q  P  S   : G  *  *  A  *  *  M  E  N  *  R  S  S  Q  V  R  T  S  A  F  C  *  R  G  G  S  C  N  C  *  D  R  K  G  E  M  Q  S  C  Y  R  S  C  *  E  S  T  K  D  G  *  N  R  S  A  K  K  E  V  C  R  V  E  S  *  A  R  G  R  K  K  E  T  S  N  *  C  S  I  S  E  *  Y  T  L  *  E  V  Y  N  R  R  D  *  G  S  H  Q  K  V  L  K  C  T  K  N  W  R  R  W  I  W  T  C  F  *  G  *  T  R  S  H  T  C  C  H  *  S  S  E  S  *  C  C  T  R  E  E  T  V  P  T  R   : G  *  G  P  Q  S  H </first_frame>
            <second_frame>  C  K  E  A  V  V  A  N  Q  A  :  A  D  E  L  N  K  W  K  I  E  E  A  R  K  F  E  Q  A  R  F  A  E  E  A  A  L  A  I  A  E  T  E  K  A  K  C  R  A  A  I  E  A  A  K  K  A  Q  K  M  A  E  I  E  A  Q  R  R  K  Y  A  E  L  K  A  K  R  E  A  E  K  K  K  Q  A  I  N  V  R  S  Q  N  D  I  R  Y  R  K  Y  T  I  E  E  I  E  A  A  T  K  K  F  S  N  A  Q  K  I  G  E  G  G  Y  G  P  V  F  K  G  K  L  D  H  T  P  V  A  I  K  V  L  S  P  D  A  A  Q  G  K  K  Q  F  Q  Q  E  :  V  E  V  L  S  L   </second_frame>
            <third_frame>   A  K  K  R  S  W  P  T  K  R :   L  M  S  L  I  N  G  K  L  K  K  L  A  S  S  N  K  R  V  L  L  K  R  R  L  L  Q  L  L  R  P  K  R  R  N  A  E  L  L  S  K  L  L  R  K  H  K  R  W  L  K  *  K  R  K  E  G  S  M  Q  S  *  K  L  S  E  R  Q  K  K  R  N  K  Q  L  M  F  D  L  R  M  I  Y  V  I  G  S  I  Q  *  K  R  L  R  Q  P  P  K  S  S  Q  M  H  K  K  L  E  K  V  D  M  D  L  F  L  R  V  N  *  I  T  H  L  L  P  L  K  F  *  V  L  M  L  H  K  G  R  N  S  S  N  K  R :   L  R  S  S  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24475" stop="24446"/>
                    <exon start="23973" stop="23545"/>
                    <exon start="23138" stop="23121"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKEAVVANQAADELNKWKIEEARKFEQARFAEEAALAIAETEKAKCRAAIEAAKKAQKMAEIEAQRRKYAELKAKREAEKKKQAINVRSQNDIRYRKYTIEEIEAATKKFSNAQKIGEGGYGPVFKGKLDHTPVAIKVLSPDAAQGKKQFQQEVEVLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="28014" PGL_stop="25624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28014" e_stop="27737"/>
            <exon e_start="26560" e_stop="26475"/>
            <exon e_start="26024" e_stop="25903"/>
            <exon e_start="25824" e_stop="25624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28014" e_stop="27737" e_length="278"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.959">
            <gDNA_intron_boundary i_start="27736" i_stop="26561" i_length="1176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26560" e_stop="26475" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26474" i_stop="26025" i_length="450"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26024" e_stop="25903" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25902" i_stop="25825" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25824" e_stop="25624" e_length="201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28014" stop="27737"/>
              <exon start="26560" stop="26484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28012" stop="27737"/>
              <exon start="26560" stop="26475"/>
              <exon start="26024" stop="25903"/>
              <exon start="25824" stop="25636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28007" stop="27737"/>
              <exon start="26560" stop="26475"/>
              <exon start="26024" stop="25903"/>
              <exon start="25824" stop="25624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28007" stop="27737"/>
              <exon start="26560" stop="26475"/>
              <exon start="26024" stop="25903"/>
              <exon start="25824" stop="25636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28001" stop="27737"/>
              <exon start="26560" stop="26475"/>
              <exon start="26024" stop="25903"/>
              <exon start="25824" stop="25792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27959" stop="27737"/>
              <exon start="26560" stop="26476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACGTGAAAGAAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGC : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : ATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGTGTCACCAACATTGTTCTTGGTGCATCGTCTAGGAGTGCTCTTGGCAG : GAAATATTGGACTCATGATGTGCCAACATTGGTAAATAAGGCTGCACCAGAGTTTTGTTCTGTCTACGTAGTTTCAAAAGGCAAGCAACAATCTGTCCGACCAGCAGCAAAATCTCTTCCTTCTTGTGTACCAGCAAGACAACCATCTTCGTCAGCATGGTCAGCACCTAGGTCAAGTAACTCTGGATCAGAAGATTCAAT</gDNA_template>
            <first_frame> S  N  V  K  E  K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  C  H  Q  H  C  S  W  C  I  V  *  E  C  S  W  Q  :  E  I  L  D  S  *  C  A  N  I  G  K  *  G  C  T  R  V  L  F  C  L  R  S  F  K  R  Q  A  T  I  C  P  T  S  S  K  I  S  S  F  L  C  T  S  K  T  T  I  F  V  S  M  V  S  T  *  V  K  *  L  W  I  R  R  F  N </first_frame>
            <second_frame>  Q  T  *  K  K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K   : P  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S  V  T  N  I  V  L  G  A  S  S  R  S  A  L  G  R :   K  Y  W  T  H  D  V  P  T  L  V  N  K  A  A  P  E  F  C  S  V  Y  V  V  S  K  G  K  Q  Q  S  V  R  P  A  A  K  S  L  P  S  C  V  P  A  R  Q  P  S  S  S  A  W  S  A  P  R  S  S  N  S  G  S  E  D  S   </second_frame>
            <third_frame>   K  R  E  R  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T  V  S  P  T  L  F  L  V  H  R  L  G  V  L  L  A   : G  N  I  G  L  M  M  C  Q  H  W  *  I  R  L  H  Q  S  F  V  L  S  T  *  F  Q  K  A  S  N  N  L  S  D  Q  Q  Q  N  L  F  L  L  V  Y  Q  Q  D  N  H  L  R  Q  H  G  Q  H  L  G  Q  V  T  L  D  Q  K  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27905" stop="27737"/>
                    <exon start="26560" stop="26475"/>
                    <exon start="26024" stop="25903"/>
                    <exon start="25824" stop="25626"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKPTLDSNGGLSDEATQNVFTPFKAYSARKRIVVKEIVIENTEASKGLLEYINSNSVTNIVLGASSRSALGRKYWTHDVPTLVNKAAPEFCSVYVVSKGKQQSVRPAAKSLPSCVPARQPSSSAWSAPRSSNSGSEDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28001" e_stop="27733"/>
            <exon e_start="26560" e_stop="26475"/>
            <exon e_start="26034" e_stop="25950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.959" e_score="0.981"/>
          <exon-intron don_prob="0.976" acc_prob="0.740" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="28001" e_stop="27733" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.959">
            <gDNA_intron_boundary i_start="27732" i_stop="26561" i_length="1172"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="26560" e_stop="26475" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.740">
            <gDNA_intron_boundary i_start="26474" i_stop="26035" i_length="440"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26034" e_stop="25950" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28001" stop="27733"/>
              <exon start="26560" stop="26475"/>
              <exon start="26034" stop="25950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACTAAGAATTTTTTTTTCAGCCACCGTTATGGTGGCGGAAAGGGGCGGAGCAAAGTAGCGGCAGCCTCTTTCCGATCTGTTTTAATATATAAATATATGAACAAAAAATGGGTTCCCAAAATCCTGGAGAAGATCCTATTGTTGTTGCCGTTGATAAAGATAAGAATAGCAGCTCTGCGGTGAAATGGGCTATTGATAATCTGCTTGGAAACAATCAAATCCTTGTATTGATTCATGTTCGGGTCAAAAATTCACCAAAGCGTAG : CTACTTTAGATTCAAATGGAGGTTTAAGTGATGAAGCTACTCAAAATGTCTTCACACCTTTCAAGGCTTATTCTGCACGCAAAAGG : GTTATTGCAGATAGTAGTGAAAGAGATTGTCATTGAGAATACTGAAGCATCGAAGGGACTTCTTGAGTACATCAACAGTAACAGT</gDNA_template>
            <first_frame> K  N  *  E  F  F  F  Q  P  P  L  W  W  R  K  G  A  E  Q  S  S  G  S  L  F  P  I  C  F  N  I  *  I  Y  E  Q  K  M  G  S  Q  N  P  G  E  D  P  I  V  V  A  V  D  K  D  K  N  S  S  S  A  V  K  W  A  I  D  N  L  L  G  N  N  Q  I  L  V  L  I  H  V  R  V  K  N  S  P  K  R  S :   Y  F  R  F  K  W  R  F  K  *  *  S  Y  S  K  C  L  H  T  F  Q  G  L  F  C  T  Q  K   : G  Y  C  R  *  *  *  K  R  L  S  L  R  I  L  K  H  R  R  D  F  L  S  T  S  T  V  T   </first_frame>
            <second_frame>  K  T  K  N  F  F  F  S  H  R  Y  G  G  G  K  G  R  S  K  V  A  A  A  S  F  R  S  V  L  I  Y  K  Y  M  N  K  K  W  V  P  K  I  L  E  K  I  L  L  L  L  P  L  I  K  I  R  I  A  A  L  R  *  N  G  L  L  I  I  C  L  E  T  I  K  S  L  Y  *  F  M  F  G  S  K  I  H  Q  S  V   : A  T  L  D  S  N  G  G  L  S  D  E  A  T  Q  N  V  F  T  P  F  K  A  Y  S  A  R  K  R  :  V  I  A  D  S  S  E  R  D  C  H  *  E  Y  *  S  I  E  G  T  S  *  V  H  Q  Q  *  Q  </second_frame>
            <third_frame>   K  L  R  I  F  F  S  A  T  V  M  V  A  E  R  G  G  A  K  *  R  Q  P  L  S  D  L  F  *  Y  I  N  I  *  T  K  N  G  F  P  K  S  W  R  R  S  Y  C  C  C  R  *  *  R  *  E  *  Q  L  C  G  E  M  G  Y  *  *  S  A  W  K  Q  S  N  P  C  I  D  S  C  S  G  Q  K  F  T  K  A  *  :  L  L  *  I  Q  M  E  V  *  V  M  K  L  L  K  M  S  S  H  L  S  R  L  I  L  H  A  K  G :   L  L  Q  I  V  V  K  E  I  V  I  E  N  T  E  A  S  K  G  L  L  E  Y  I  N  S  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27905" stop="27733"/>
                    <exon start="26560" stop="26530"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYEQKMGSQNPGEDPIVVAVDKDKNSSSAVKWAIDNLLGNNQILVLIHVRVKNSPKRSYFRFKWRFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="29330" PGL_stop="28995"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29330" e_stop="28995"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="29330" e_stop="28995" e_length="336"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29330" stop="28995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACATCAACGTCGGTTGTTCACAACGACACAGTGGGGACGAGTTGAGGTGTCTAGATGTGTATTCTCAAAGTTGAAGTGTATAATTGTCCATTGAGGCCAAGGTAAGTCGTCTATTTATGTGTTACATTTTTTTCTTTACCTTGGGATAAATATAATGGCTATTATTGGAGTAGGTTTCTATATGTATTTTAGTGAATGTTCCATTATGTATGTAATTTTCTTTATTTAGCTATTTGAAGTAGCAAAAACTACTACACTATAATCAAATGTAATATGGTCCTTATGCCTCCATAGTTAAAAGGCTCTATGTAGGTATTTTAATCTATTGTTTGAC</gDNA_template>
            <first_frame> S  H  Q  R  R  L  F  T  T  T  Q  W  G  R  V  E  V  S  R  C  V  F  S  K  L  K  C  I  I  V  H  *  G  Q  G  K  S  S  I  Y  V  L  H  F  F  L  Y  L  G  I  N  I  M  A  I  I  G  V  G  F  Y  M  Y  F  S  E  C  S  I  M  Y  V  I  F  F  I  *  L  F  E  V  A  K  T  T  T  L  *  S  N  V  I  W  S  L  C  L  H  S  *  K  A  L  C  R  Y  F  N  L  L  F  D </first_frame>
            <second_frame>  H  I  N  V  G  C  S  Q  R  H  S  G  D  E  L  R  C  L  D  V  Y  S  Q  S  *  S  V  *  L  S  I  E  A  K  V  S  R  L  F  M  C  Y  I  F  F  F  T  L  G  *  I  *  W  L  L  L  E  *  V  S  I  C  I  L  V  N  V  P  L  C  M  *  F  S  L  F  S  Y  L  K  *  Q  K  L  L  H  Y  N  Q  M  *  Y  G  P  Y  A  S  I  V  K  R  L  Y  V  G  I  L  I  Y  C  L   </second_frame>
            <third_frame>   T  S  T  S  V  V  H  N  D  T  V  G  T  S  *  G  V  *  M  C  I  L  K  V  E  V  Y  N  C  P  L  R  P  R  *  V  V  Y  L  C  V  T  F  F  S  L  P  W  D  K  Y  N  G  Y  Y  W  S  R  F  L  Y  V  F  *  *  M  F  H  Y  V  C  N  F  L  Y  L  A  I  *  S  S  K  N  Y  Y  T  I  I  K  C  N  M  V  L  M  P  P  *  L  K  G  S  M  *  V  F  *  S  I  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0210G12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="31639" PGL_stop="30849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31639" e_stop="31008"/>
            <exon e_start="30912" e_stop="30849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="31639" e_stop="31008" e_length="632"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31007" i_stop="30913" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30912" e_stop="30849" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31639" stop="31008"/>
              <exon start="30912" stop="30849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACAGCATCATCTGTGCCTGAAGAGAGCAGAAGTGAAGGGACTATGTCGCTTGATGTGATATCTGAAAATGAAAGCAACTGGATTGCTGGTGATGCTGTTGTTAGGGAAAGTGAGGATGATGATTCCTTATCACTGGAGGGTGATCAAATTCTCGATAATTCGTGTTCCCTGTCAGTGGTGAGCGATTGTAGTAGTTTATGCGCTGATGATTTTATAGGCTTTGAGATAGCGTCTGACATAGAAGGTCAGGATTTCGTGGATTCTCAGAAAAGCATCAGCCATGATGAACTTATTGGTAAGACTGGGGTTTTGGTTGAGTCAGATGTTGAGGATACTTTGATTAGACCCGCGGCAGTTCCTGAGAGACTTGAGGAGCAGATCACTGATAAAGATTTGAATGCAACAGTCAGCCGCAGTGTTTTTGAAGTGGACTACATACCCTTATGGGGATATACATCTATCTGTGGAAGGAGACCAGAAATGGAAGACGCATTCGCAACTGTTCCTAGATTCATGAAAATTCCTCTACCGATGTTAATTGGTGATCGCGTGCTTGATGGACTGTCTAGACGCTTGAGTCATTTGACGACTCATTTCTTTGGAGTTTATGATGGCCATGGTGGTTCTCAG : GTGGCAAATTACTGCCGAGACCGGATTCATGCTGTATTGGCTGAGGAGTTGGAAACTTTTATGA</gDNA_template>
            <first_frame> L  Q  H  H  L  C  L  K  R  A  E  V  K  G  L  C  R  L  M  *  Y  L  K  M  K  A  T  G  L  L  V  M  L  L  L  G  K  V  R  M  M  I  P  Y  H  W  R  V  I  K  F  S  I  I  R  V  P  C  Q  W  *  A  I  V  V  V  Y  A  L  M  I  L  *  A  L  R  *  R  L  T  *  K  V  R  I  S  W  I  L  R  K  A  S  A  M  M  N  L  L  V  R  L  G  F  W  L  S  Q  M  L  R  I  L  *  L  D  P  R  Q  F  L  R  D  L  R  S  R  S  L  I  K  I  *  M  Q  Q  S  A  A  V  F  L  K  W  T  T  Y  P  Y  G  D  I  H  L  S  V  E  G  D  Q  K  W  K  T  H  S  Q  L  F  L  D  S  *  K  F  L  Y  R  C  *  L  V  I  A  C  L  M  D  C  L  D  A  *  V  I  *  R  L  I  S  L  E  F  M  M  A  M  V  V  L  R :   W  Q  I  T  A  E  T  G  F  M  L  Y  W  L  R  S  W  K  L  L  * </first_frame>
            <second_frame>  Y  S  I  I  C  A  *  R  E  Q  K  *  R  D  Y  V  A  *  C  D  I  *  K  *  K  Q  L  D  C  W  *  C  C  C  *  G  K  *  G  *  *  F  L  I  T  G  G  *  S  N  S  R  *  F  V  F  P  V  S  G  E  R  L  *  *  F  M  R  *  *  F  Y  R  L  *  D  S  V  *  H  R  R  S  G  F  R  G  F  S  E  K  H  Q  P  *  *  T  Y  W  *  D  W  G  F  G  *  V  R  C  *  G  Y  F  D  *  T  R  G  S  S  *  E  T  *  G  A  D  H  *  *  R  F  E  C  N  S  Q  P  Q  C  F  *  S  G  L  H  T  L  M  G  I  Y  I  Y  L  W  K  E  T  R  N  G  R  R  I  R  N  C  S  *  I  H  E  N  S  S  T  D  V  N  W  *  S  R  A  *  W  T  V  *  T  L  E  S  F  D  D  S  F  L  W  S  L  *  W  P  W  W  F  S   : G  G  K  L  L  P  R  P  D  S  C  C  I  G  *  G  V  G  N  F  Y   </second_frame>
            <third_frame>   T  A  S  S  V  P  E  E  S  R  S  E  G  T  M  S  L  D  V  I  S  E  N  E  S  N  W  I  A  G  D  A  V  V  R  E  S  E  D  D  D  S  L  S  L  E  G  D  Q  I  L  D  N  S  C  S  L  S  V  V  S  D  C  S  S  L  C  A  D  D  F  I  G  F  E  I  A  S  D  I  E  G  Q  D  F  V  D  S  Q  K  S  I  S  H  D  E  L  I  G  K  T  G  V  L  V  E  S  D  V  E  D  T  L  I  R  P  A  A  V  P  E  R  L  E  E  Q  I  T  D  K  D  L  N  A  T  V  S  R  S  V  F  E  V  D  Y  I  P  L  W  G  Y  T  S  I  C  G  R  R  P  E  M  E  D  A  F  A  T  V  P  R  F  M  K  I  P  L  P  M  L  I  G  D  R  V  L  D  G  L  S  R  R  L  S  H  L  T  T  H  F  F  G  V  Y  D  G  H  G  G  S  Q  :  V  A  N  Y  C  R  D  R  I  H  A  V  L  A  E  E  L  E  T  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31637" stop="31008"/>
                    <exon start="30912" stop="30850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TASSVPEESRSEGTMSLDVISENESNWIAGDAVVRESEDDDSLSLEGDQILDNSCSLSVVSDCSSLCADDFIGFEIASDIEGQDFVDSQKSISHDELIGKTGVLVESDVEDTLIRPAAVPERLEEQITDKDLNATVSRSVFEVDYIPLWGYTSICGRRPEMEDAFATVPRFMKIPLPMLIGDRVLDGLSRRLSHLTTHFFGVYDGHGGSQVANYCRDRIHAVLAEELETFM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="39394" PGL_stop="40372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39394" e_stop="40372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="39394" e_stop="40372" e_length="979"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39394" stop="40070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39744" stop="40372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39744" stop="40372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39744" stop="40369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAAGTAACTAAAAGTAGTGTTGGAACTGCAACTGTTCAGTTGGGATTCTCCGAGGCATCGTCTTCGACTATTGCTAGTGCTGCTGCTGGGCTTAGCGCGGCGATGGCTGCTCAATTGGTGTGGACACCAATTGATGTTGTGAGTCAGAGGTTGATGGTTCAAGGAAGTGGGAATTCTAGTTGTGGTGTTGTTGGATTGAAATGTTATAGCGGTGGGATTGACGCGTTTAGGAAGATTATTCGTAGTGATGGCTTGAGGGGATTGTATAGAGGATTTGGTATTTCAATACTGACTTATGCACCTTCAAATGCAGTGTGGTGGGGTTCATACACTACAGCTCATAGATTGGTTTGGGGCTCCATTGGTTGCTATTGTTGCAAGAAAGACAACGAGGGCGGTTATAAGCCAGATGGGAAGGCAATGCTTGCTGTTCAAGGAGTGAGTGCAGCTATGGCTAGTGGAGTGTCTGCATTAGTTACAATGCCACTCGACACCGTCAAAACAAGATTACAAGTATTAGATGATGATTGTTGCAGTAGTAGTAGTAGTAGGAGAACACCAACAGTTTTACAAACAGTGAAGAATTTACTGAAGGAAGGTGGATTTAGTGCTTGTTATAGAGGATTAGGTCCAAGATGGGCATCAATGTCCATGTCTGCAATAACTATGATCACTACTTATGAGTTCCTCAAGAAACTATCCACCAAGAATCAAGAAACCTTTGTTTGATGAAATCTTGGATTGACATAGAGGCACAGATGCCAATGAGGGACAATGGAGCCATTCTGAACACACAACGAATCTGAATTAGTTTGGCCAGTGTTTATATGGCGCGAATCCAGAGTAGTCGGGCTAGTGGTTTAAAAACCTAAAGAAAAGGGTAGATGGAGAAGATGTTTCTATATTTAGAATCCTTTTGAAGTTTTCTTTTTCTTATGTTTTTACCTAACCTAATGTAAATTTTTGTAAAAAAGGT</gDNA_template>
            <first_frame> L  E  V  T  K  S  S  V  G  T  A  T  V  Q  L  G  F  S  E  A  S  S  S  T  I  A  S  A  A  A  G  L  S  A  A  M  A  A  Q  L  V  W  T  P  I  D  V  V  S  Q  R  L  M  V  Q  G  S  G  N  S  S  C  G  V  V  G  L  K  C  Y  S  G  G  I  D  A  F  R  K  I  I  R  S  D  G  L  R  G  L  Y  R  G  F  G  I  S  I  L  T  Y  A  P  S  N  A  V  W  W  G  S  Y  T  T  A  H  R  L  V  W  G  S  I  G  C  Y  C  C  K  K  D  N  E  G  G  Y  K  P  D  G  K  A  M  L  A  V  Q  G  V  S  A  A  M  A  S  G  V  S  A  L  V  T  M  P  L  D  T  V  K  T  R  L  Q  V  L  D  D  D  C  C  S  S  S  S  S  R  R  T  P  T  V  L  Q  T  V  K  N  L  L  K  E  G  G  F  S  A  C  Y  R  G  L  G  P  R  W  A  S  M  S  M  S  A  I  T  M  I  T  T  Y  E  F  L  K  K  L  S  T  K  N  Q  E  T  F  V  *  *  N  L  G  L  T  *  R  H  R  C  Q  *  G  T  M  E  P  F  *  T  H  N  E  S  E  L  V  W  P  V  F  I  W  R  E  S  R  V  V  G  L  V  V  *  K  P  K  E  K  G  R  W  R  R  C  F  Y  I  *  N  P  F  E  V  F  F  F  L  C  F  Y  L  T  *  C  K  F  L  *  K  R  </first_frame>
            <second_frame>  L  K  *  L  K  V  V  L  E  L  Q  L  F  S  W  D  S  P  R  H  R  L  R  L  L  L  V  L  L  L  G  L  A  R  R  W  L  L  N  W  C  G  H  Q  L  M  L  *  V  R  G  *  W  F  K  E  V  G  I  L  V  V  V  L  L  D  *  N  V  I  A  V  G  L  T  R  L  G  R  L  F  V  V  M  A  *  G  D  C  I  E  D  L  V  F  Q  Y  *  L  M  H  L  Q  M  Q  C  G  G  V  H  T  L  Q  L  I  D  W  F  G  A  P  L  V  A  I  V  A  R  K  T  T  R  A  V  I  S  Q  M  G  R  Q  C  L  L  F  K  E  *  V  Q  L  W  L  V  E  C  L  H  *  L  Q  C  H  S  T  P  S  K  Q  D  Y  K  Y  *  M  M  I  V  A  V  V  V  V  V  G  E  H  Q  Q  F  Y  K  Q  *  R  I  Y  *  R  K  V  D  L  V  L  V  I  E  D  *  V  Q  D  G  H  Q  C  P  C  L  Q  *  L  *  S  L  L  M  S  S  S  R  N  Y  P  P  R  I  K  K  P  L  F  D  E  I  L  D  *  H  R  G  T  D  A  N  E  G  Q  W  S  H  S  E  H  T  T  N  L  N  *  F  G  Q  C  L  Y  G  A  N  P  E  *  S  G  *  W  F  K  N  L  K  K  R  V  D  G  E  D  V  S  I  F  R  I  L  L  K  F  S  F  S  Y  V  F  T  *  P  N  V  N  F  C  K  K  G </second_frame>
            <third_frame>   *  S  N  *  K  *  C  W  N  C  N  C  S  V  G  I  L  R  G  I  V  F  D  Y  C  *  C  C  C  W  A  *  R  G  D  G  C  S  I  G  V  D  T  N  *  C  C  E  S  E  V  D  G  S  R  K  W  E  F  *  L  W  C  C  W  I  E  M  L  *  R  W  D  *  R  V  *  E  D  Y  S  *  *  W  L  E  G  I  V  *  R  I  W  Y  F  N  T  D  L  C  T  F  K  C  S  V  V  G  F  I  H  Y  S  S  *  I  G  L  G  L  H  W  L  L  L  L  Q  E  R  Q  R  G  R  L  *  A  R  W  E  G  N  A  C  C  S  R  S  E  C  S  Y  G  *  W  S  V  C  I  S  Y  N  A  T  R  H  R  Q  N  K  I  T  S  I  R  *  *  L  L  Q  *  *  *  *  *  E  N  T  N  S  F  T  N  S  E  E  F  T  E  G  R  W  I  *  C  L  L  *  R  I  R  S  K  M  G  I  N  V  H  V  C  N  N  Y  D  H  Y  L  *  V  P  Q  E  T  I  H  Q  E  S  R  N  L  C  L  M  K  S  W  I  D  I  E  A  Q  M  P  M  R  D  N  G  A  I  L  N  T  Q  R  I  *  I  S  L  A  S  V  Y  M  A  R  I  Q  S  S  R  A  S  G  L  K  T  *  R  K  G  *  M  E  K  M  F  L  Y  L  E  S  F  *  S  F  L  F  L  M  F  L  P  N  L  M  *  I  F  V  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39394" stop="40125"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEVTKSSVGTATVQLGFSEASSSTIASAAAGLSAAMAAQLVWTPIDVVSQRLMVQGSGNSSCGVVGLKCYSGGIDAFRKIIRSDGLRGLYRGFGISILTYAPSNAVWWGSYTTAHRLVWGSIGCYCCKKDNEGGYKPDGKAMLAVQGVSAAMASGVSALVTMPLDTVKTRLQVLDDDCCSSSSSRRTPTVLQTVKNLLKEGGFSACYRGLGPRWASMSMSAITMITTYEFLKKLSTKNQETFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="40372" PGL_stop="39795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40372" e_stop="39795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="40372" e_stop="39795" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40372" stop="39795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTTTTTTACAAAAATTTACATTAGGTTAGGTAAAAACATAAGAAAAAGAAAACTTCAAAAGGATTCTAAATATAGAAACATCTTCTCCATCTACCCTTTTCTTTAGGTTTTTAAACCACTAGCCCGACTACTCTGGATTCGCGCCATATAAACACTGGCCAAACTAATTCAGATTCGTTGTGTGTTCAGAATGGCTCCATTGTCCCTCATTGGCATCTGTGCCTCTATGTCAATCCAAGATTTCATCAAACAAAGGTTTCTTGATTCTTGGTGGATAGTTTCTTGAGGAACTCATAAGTAGTGATCATAGTTATTGCAGACATGGACATTGATGCCCATCTTGGACCTAATCCTCTATAACAAGCACTAAATCCACCTTCCTTCAGTAAATTCTTCACTGTTTGTAAAACTGTTGGTGTTCTCCTACTACTACTACTACTGCAACAATCATCATCTAATACTTGTAATCTTGTTTTGACGGTGTCGAGTGGCATTGTAACTAATGCAGACACTCCACTAGCCATAGCTGCACTCACTCCTTGAACAGCAAGCATTGCCTTCCCATCTGGCTTATAA</gDNA_template>
            <first_frame> T  F  F  T  K  I  Y  I  R  L  G  K  N  I  R  K  R  K  L  Q  K  D  S  K  Y  R  N  I  F  S  I  Y  P  F  L  *  V  F  K  P  L  A  R  L  L  W  I  R  A  I  *  T  L  A  K  L  I  Q  I  R  C  V  F  R  M  A  P  L  S  L  I  G  I  C  A  S  M  S  I  Q  D  F  I  K  Q  R  F  L  D  S  W  W  I  V  S  *  G  T  H  K  *  *  S  *  L  L  Q  T  W  T  L  M  P  I  L  D  L  I  L  Y  N  K  H  *  I  H  L  P  S  V  N  S  S  L  F  V  K  L  L  V  F  S  Y  Y  Y  Y  Y  C  N  N  H  H  L  I  L  V  I  L  F  *  R  C  R  V  A  L  *  L  M  Q  T  L  H  *  P  *  L  H  S  L  L  E  Q  Q  A  L  P  S  H  L  A  Y   </first_frame>
            <second_frame>  P  F  L  Q  K  F  T  L  G  *  V  K  T  *  E  K  E  N  F  K  R  I  L  N  I  E  T  S  S  P  S  T  L  F  F  R  F  L  N  H  *  P  D  Y  S  G  F  A  P  Y  K  H  W  P  N  *  F  R  F  V  V  C  S  E  W  L  H  C  P  S  L  A  S  V  P  L  C  Q  S  K  I  S  S  N  K  G  F  L  I  L  G  G  *  F  L  E  E  L  I  S  S  D  H  S  Y  C  R  H  G  H  *  C  P  S  W  T  *  S  S  I  T  S  T  K  S  T  F  L  Q  *  I  L  H  C  L  *  N  C  W  C  S  P  T  T  T  T  T  A  T  I  I  I  *  Y  L  *  S  C  F  D  G  V  E  W  H  C  N  *  C  R  H  S  T  S  H  S  C  T  H  S  L  N  S  K  H  C  L  P  I  W  L  I  </second_frame>
            <third_frame>   L  F  Y  K  N  L  H  *  V  R  *  K  H  K  K  K  K  T  S  K  G  F  *  I  *  K  H  L  L  H  L  P  F  S  L  G  F  *  T  T  S  P  T  T  L  D  S  R  H  I  N  T  G  Q  T  N  S  D  S  L  C  V  Q  N  G  S  I  V  P  H  W  H  L  C  L  Y  V  N  P  R  F  H  Q  T  K  V  S  *  F  L  V  D  S  F  L  R  N  S  *  V  V  I  I  V  I  A  D  M  D  I  D  A  H  L  G  P  N  P  L  *  Q  A  L  N  P  P  S  F  S  K  F  F  T  V  C  K  T  V  G  V  L  L  L  L  L  L  L  Q  Q  S  S  S  N  T  C  N  L  V  L  T  V  S  S  G  I  V  T  N  A  D  T  P  L  A  I  A  A  L  T  P  *  T  A  S  I  A  F  P  S  G  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0210G12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="50788" PGL_stop="42198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50788" e_stop="50582"/>
            <exon e_start="50256" e_stop="50224"/>
            <exon e_start="48569" e_stop="48341"/>
            <exon e_start="47818" e_stop="47686"/>
            <exon e_start="43261" e_stop="42352"/>
            <exon e_start="42208" e_stop="42198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.932" e_score="0.928"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50788" e_stop="50582" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50256" e_stop="50224" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48569" e_stop="48341" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.829">
            <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47818" e_stop="47686" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47685" i_stop="43262" i_length="4424"/>
          </intron>
          <exon e_serial="5" e_score="0.928">
            <gDNA_exon_boundary e_start="43261" e_stop="42352" e_length="910"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.932">
            <gDNA_intron_boundary i_start="42351" i_stop="42209" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="0.700">
            <gDNA_exon_boundary e_start="42208" e_stop="42198" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50788" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="43058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50763" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50758" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="42940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50753" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="43017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50749" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="42974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50749" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50743" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50739" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="43108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50739" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50706" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="43048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50680" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="43261" stop="42938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50679" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43261" stop="42617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415695" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43210" stop="42352"/>
              <exon start="42208" stop="42198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43210" stop="42352"/>
              <exon start="42208" stop="42199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43137" stop="42649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43034" stop="42634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAAAATTTTCATTTTCCCCCTCTCCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG : ATGTTGAAGAGTTTTATCAACAATGTGACCCAG : AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG : GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG : GTGGTACAACGTGGTTCTGAATCTCAGATCAAGTATTCAAGACCACAACCAAAAGATGACGATGAAGATGGTTTGGATGAAGATGATGAGCAAGGAGAAACACTATGTGGTGCTTGTGGTGAAAACTATGCATCTGATGAATTCTGGATCTGCTGTGACATATGTGAGGTATGGTTCCATGGGAAGTGTGTTAAAATCACTCCTGCCAGGGCTGAGCATATCAAGCAGTACAAGTGCCCATCTTGCACCAGCAGCAAGAGAACACGCCCTTGATTGCACCTGCGTTATTGAGGTTTATCCTTTGTGAAGTCATGAAAACTGTTAAGATCTTTTCGCGGTATGAGAAGTGGATTTCTTATGGGAAGCTCTTCGATGCCATATGTTCTATTCAACATTACAATTATCTATTATCTAGTTGCAAGAATGTTGTTGTCTAGCGTCTTTTTCTAGTATGTCGTGCTGTGAATGATGTAGGTTGCCTCTCTAAATTAGTCGTTGTGTAGGTTGAAGTTATTGTGTCATGACTGTTCAAATCTCAAGTAGTTGTCTCTGCACTGTTGAGGGAAGCCATTTTTCTCAGTTATGTGATGTTAAGAAGATGCTGTTCTTCCCCAAATTTGTTTTGTCAATCTTTTGTTTCCTGTGGCCTGCAATTTTTTTTGTTCCCTCTCCTCCCCTCTTATTTGATTCATTCTGAAGTAGCTGATACAGTTCAGTGCACGAAGCATCTCGTGTTTACGTGGGTTCGGAAAAGGACTGTATGCATGTAATGTGGTTAGTACATCTTAATTCTTGAAGTAACAAGTCTAGCTGTGTATTTGATTGAGGTATTGCCTATATATTTTTTGGTTTTCTATCTCATGTGTTGTGTTTGTTTTGAAGTTCAACTAATTTGGATTTACGCTTAAAA : AAGGAAAATAT</gDNA_template>
            <first_frame> P  K  I  F  I  F  P  L  S  L  P  S  I  L  S  L  C  L  S  F  L  S  L  N  F  L  S  H  Q  Q  S  H  F  C  V  S  *  W  M  E  L  S  S  T  I  L  E  L  L  K  K  C  L  E  I  L  R  V  E  E  L  H  L  S  K  P  L  L  L  :  M  L  K  S  F  I  N  N  V  T  Q  :  R  K  R  T  S  A  F  M  D  F  P  V  K  V  G  K  S  I  Y  Q  L  K  K  C  P  Q  S  F  L  S  L  L  W  A  *  T  S  P  E  M  A  C  K  R  R  T  G  S  P  W  L  L  C  I  V  M  H  G  Y  F  L  L  P  F  I  L  V  L  D  L  G  L  I  E  L  I   : G  E  G  C  S  I  *  *  M  I  S  L  Q  F  S  R  L  C  L  G  Q  P  R  N  N  Q  K  T  S  H  Q  C  Q  I  T  A  A  P  S  L  S  Q  T  Q  R :   W  Y  N  V  V  L  N  L  R  S  S  I  Q  D  H  N  Q  K  M  T  M  K  M  V  W  M  K  M  M  S  K  E  K  H  Y  V  V  L  V  V  K  T  M  H  L  M  N  S  G  S  A  V  T  Y  V  R  Y  G  S  M  G  S  V  L  K  S  L  L  P  G  L  S  I  S  S  S  T  S  A  H  L  A  P  A  A  R  E  H  A  L  D  C  T  C  V  I  E  V  Y  P  L  *  S  H  E  N  C  *  D  L  F  A  V  *  E  V  D  F  L  W  E  A  L  R  C  H  M  F  Y  S  T  L  Q  L  S  I  I  *  L  Q  E  C  C  C  L  A  S  F  S  S  M  S  C  C  E  *  C  R  L  P  L  *  I  S  R  C  V  G  *  S  Y  C  V  M  T  V  Q  I  S  S  S  C  L  C  T  V  E  G  S  H  F  S  Q  L  C  D  V  K  K  M  L  F  F  P  K  F  V  L  S  I  F  C  F  L  W  P  A  I  F  F  V  P  S  P  P  L  L  F  D  S  F  *  S  S  *  Y  S  S  V  H  E  A  S  R  V  Y  V  G  S  E  K  D  C  M  H  V  M  W  L  V  H  L  N  S  *  S  N  K  S  S  C  V  F  D  *  G  I  A  Y  I  F  F  G  F  L  S  H  V  L  C  L  F  *  S  S  T  N  L  D  L  R  L  K  :  K  E  N   </first_frame>
            <second_frame>  P  K  F  S  F  S  P  S  P  F  P  P  F  S  L  S  V  *  A  F  S  L  *  T  F  S  L  I  S  K  A  I  S  V  S  H  D  G  W  S  S  A  V  Q  S  S  N  C  *  R  S  V  *  R  F  *  G  S  K  S  C  T  C  Q  S  P  Y  Y  * :   C  *  R  V  L  S  T  M  *  P  R :   E  R  E  P  L  P  L  W  I  S  Q  *  K  L  G  S  Q  F  T  S  *  R  S  A  P  R  A  S  *  A  C  F  G  H  K  L  R  P  R  W  H  A  R  E  G  L  A  L  L  G  C  C  A  *  *  C  M  V  T  F  C  C  L  L  F  W  C  *  I  W  V  *  *  S  *  *  :  E  K  V  V  Q  Y  D  K  *  S  P  Y  N  F  R  G  C  V  W  D  S  Q  E  T  I  K  R  Q  V  I  N  V  K  S  Q  Q  H  Q  V  *  V  K  L  K   : G  G  T  T  W  F  *  I  S  D  Q  V  F  K  T  T  T  K  R  *  R  *  R  W  F  G  *  R  *  *  A  R  R  N  T  M  W  C  L  W  *  K  L  C  I  *  *  I  L  D  L  L  *  H  M  *  G  M  V  P  W  E  V  C  *  N  H  S  C  Q  G  *  A  Y  Q  A  V  Q  V  P  I  L  H  Q  Q  Q  E  N  T  P  L  I  A  P  A  L  L  R  F  I  L  C  E  V  M  K  T  V  K  I  F  S  R  Y  E  K  W  I  S  Y  G  K  L  F  D  A  I  C  S  I  Q  H  Y  N  Y  L  L  S  S  C  K  N  V  V  V  *  R  L  F  L  V  C  R  A  V  N  D  V  G  C  L  S  K  L  V  V  V  *  V  E  V  I  V  S  *  L  F  K  S  Q  V  V  V  S  A  L  L  R  E  A  I  F  L  S  Y  V  M  L  R  R  C  C  S  S  P  N  L  F  C  Q  S  F  V  S  C  G  L  Q  F  F  L  F  P  L  L  P  S  Y  L  I  H  S  E  V  A  D  T  V  Q  C  T  K  H  L  V  F  T  W  V  R  K  R  T  V  C  M  *  C  G  *  Y  I  L  I  L  E  V  T  S  L  A  V  Y  L  I  E  V  L  P  I  Y  F  L  V  F  Y  L  M  C  C  V  C  F  E  V  Q  L  I  W  I  Y  A  *  K :   R  K  I  </second_frame>
            <third_frame>   Q  N  F  H  F  P  P  L  P  S  L  H  S  L  S  L  S  K  L  S  L  S  K  L  S  L  S  S  A  K  P  F  L  C  L  M  M  D  G  A  Q  Q  Y  N  P  R  T  V  E  E  V  F  R  D  F  K  G  R  R  A  A  L  V  K  A  L  T  T   : D  V  E  E  F  Y  Q  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  F  P  S  E  S  W  E  V  N  L  P  A  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  A  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  D  R  A  D  R :   R  R  L  F  N  M  I  N  D  L  P  T  I  F  E  V  V  S  G  T  A  K  K  Q  S  K  D  K  S  S  M  S  N  H  S  S  T  K  S  K  S  N  S  K  :  V  V  Q  R  G  S  E  S  Q  I  K  Y  S  R  P  Q  P  K  D  D  D  E  D  G  L  D  E  D  D  E  Q  G  E  T  L  C  G  A  C  G  E  N  Y  A  S  D  E  F  W  I  C  C  D  I  C  E  V  W  F  H  G  K  C  V  K  I  T  P  A  R  A  E  H  I  K  Q  Y  K  C  P  S  C  T  S  S  K  R  T  R  P  *  L  H  L  R  Y  *  G  L  S  F  V  K  S  *  K  L  L  R  S  F  R  G  M  R  S  G  F  L  M  G  S  S  S  M  P  Y  V  L  F  N  I  T  I  I  Y  Y  L  V  A  R  M  L  L  S  S  V  F  F  *  Y  V  V  L  *  M  M  *  V  A  S  L  N  *  S  L  C  R  L  K  L  L  C  H  D  C  S  N  L  K  *  L  S  L  H  C  *  G  K  P  F  F  S  V  M  *  C  *  E  D  A  V  L  P  Q  I  C  F  V  N  L  L  F  P  V  A  C  N  F  F  C  S  L  S  S  P  L  I  *  F  I  L  K  *  L  I  Q  F  S  A  R  S  I  S  C  L  R  G  F  G  K  G  L  Y  A  C  N  V  V  S  T  S  *  F  L  K  *  Q  V  *  L  C  I  *  L  R  Y  C  L  Y  I  F  W  F  S  I  S  C  V  V  F  V  L  K  F  N  *  F  G  F  T  L  K   : K  G  K  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50786" stop="50582"/>
                    <exon start="50256" stop="50224"/>
                    <exon start="48569" stop="48341"/>
                    <exon start="47818" stop="47686"/>
                    <exon start="43261" stop="42989"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNFHFPPLPSLHSLSLSKLSLSKLSLSSAKPFLCLMMDGAQQYNPRTVEEVFRDFKGRRAALVKALTTDVEEFYQQCDPEKENLCLYGFPSESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRADRRRLFNMINDLPTIFEVVSGTAKKQSKDKSSMSNHSSTKSKSNSKVVQRGSESQIKYSRPQPKDDDEDGLDEDDEQGETLCGACGENYASDEFWICCDICEVWFHGKCVKITPARAEHIKQYKCPSCTSSKRTRP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42737" stop="42492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKSQVVVSALLREAIFLSYVMLRRCCSSPNLFCQSFVSCGLQFFLFPLLPSYLIHSEVADTVQCTKHLVFTWVRKRTVCM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50763" e_stop="50582"/>
            <exon e_start="50256" e_stop="50224"/>
            <exon e_start="48569" e_stop="48341"/>
            <exon e_start="47818" e_stop="47686"/>
            <exon e_start="47435" e_stop="47402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.975"/>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.829" e_score="0.983"/>
          <exon-intron don_prob="0.968" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.559"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="50763" e_stop="50582" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50581" i_stop="50257" i_length="325"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50256" e_stop="50224" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="50223" i_stop="48570" i_length="1654"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="48569" e_stop="48341" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.829">
            <gDNA_intron_boundary i_start="48340" i_stop="47819" i_length="522"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47818" e_stop="47686" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47685" i_stop="47436" i_length="250"/>
          </intron>
          <exon e_serial="5" e_score="0.559">
            <gDNA_exon_boundary e_start="47435" e_stop="47402" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50763" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50751" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
              <exon start="47435" stop="47402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50749" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50743" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50739" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50679" stop="50582"/>
              <exon start="50256" stop="50224"/>
              <exon start="48569" stop="48341"/>
              <exon start="47818" stop="47717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTCCCTCCATTCTCTCTCTCTGTCTAAGCTTTCTCTCTCTAAACTTTCTCTCTCATCAGCAAAGCCATTTCTGTGTCTCATGATGGATGGAGCTCAGCAGTACAATCCTCGAACTGTTGAAGAAGTGTTTAGAGATTTTAAGGGTCGAAGAGCTGCACTTGTCAAAGCCCTTACTACTG : ATGTTGAAGAGTTTTATCAACAATGTGACCCAG : AGAAAGAGAACCTCTGCCTTTATGGATTTCCCAGTGAAAGTTGGGAAGTCAATTTACCAGCTGAAGAAGTGCCCCCAGAGCTTCCTGAGCCTGCTTTGGGCATAAACTTCGCCCGAGATGGCATGCAAGAGAAGGACTGGCTCTCCTTGGTTGCTGTGCATAGTGATGCATGGTTACTTTCTGTTGCCTTTTATTTTGGTGCTAGATTTGGGTTTGATAGAGCTGATAG : GAGAAGGTTGTTCAATATGATAAATGATCTCCCTACAATTTTCGAGGTTGTGTCTGGGACAGCCAAGAAACAATCAAAAGACAAGTCATCAATGTCAAATCACAGCAGCACCAAGTCTAAGTCAAACTCAAAG : TTCACCACAATGTCAATTTCCAAGATATCACTAC</gDNA_template>
            <first_frame> P  F  P  P  F  S  L  S  V  *  A  F  S  L  *  T  F  S  L  I  S  K  A  I  S  V  S  H  D  G  W  S  S  A  V  Q  S  S  N  C  *  R  S  V  *  R  F  *  G  S  K  S  C  T  C  Q  S  P  Y  Y  * :   C  *  R  V  L  S  T  M  *  P  R :   E  R  E  P  L  P  L  W  I  S  Q  *  K  L  G  S  Q  F  T  S  *  R  S  A  P  R  A  S  *  A  C  F  G  H  K  L  R  P  R  W  H  A  R  E  G  L  A  L  L  G  C  C  A  *  *  C  M  V  T  F  C  C  L  L  F  W  C  *  I  W  V  *  *  S  *  *  :  E  K  V  V  Q  Y  D  K  *  S  P  Y  N  F  R  G  C  V  W  D  S  Q  E  T  I  K  R  Q  V  I  N  V  K  S  Q  Q  H  Q  V  *  V  K  L  K   : V  H  H  N  V  N  F  Q  D  I  T   </first_frame>
            <second_frame>  P  S  L  H  S  L  S  L  S  K  L  S  L  S  K  L  S  L  S  S  A  K  P  F  L  C  L  M  M  D  G  A  Q  Q  Y  N  P  R  T  V  E  E  V  F  R  D  F  K  G  R  R  A  A  L  V  K  A  L  T  T   : D  V  E  E  F  Y  Q  Q  C  D  P   : E  K  E  N  L  C  L  Y  G  F  P  S  E  S  W  E  V  N  L  P  A  E  E  V  P  P  E  L  P  E  P  A  L  G  I  N  F  A  R  D  G  M  Q  E  K  D  W  L  S  L  V  A  V  H  S  D  A  W  L  L  S  V  A  F  Y  F  G  A  R  F  G  F  D  R  A  D  R :   R  R  L  F  N  M  I  N  D  L  P  T  I  F  E  V  V  S  G  T  A  K  K  Q  S  K  D  K  S  S  M  S  N  H  S  S  T  K  S  K  S  N  S  K  :  F  T  T  M  S  I  S  K  I  S  L  </second_frame>
            <third_frame>   L  P  S  I  L  S  L  C  L  S  F  L  S  L  N  F  L  S  H  Q  Q  S  H  F  C  V  S  *  W  M  E  L  S  S  T  I  L  E  L  L  K  K  C  L  E  I  L  R  V  E  E  L  H  L  S  K  P  L  L  L  :  M  L  K  S  F  I  N  N  V  T  Q  :  R  K  R  T  S  A  F  M  D  F  P  V  K  V  G  K  S  I  Y  Q  L  K  K  C  P  Q  S  F  L  S  L  L  W  A  *  T  S  P  E  M  A  C  K  R  R  T  G  S  P  W  L  L  C  I  V  M  H  G  Y  F  L  L  P  F  I  L  V  L  D  L  G  L  I  E  L  I   : G  E  G  C  S  I  *  *  M  I  S  L  Q  F  S  R  L  C  L  G  Q  P  R  N  N  Q  K  T  S  H  Q  C  Q  I  T  A  A  P  S  L  S  Q  T  Q  S :   S  P  Q  C  Q  F  P  R  Y  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50762" stop="50582"/>
                    <exon start="50256" stop="50224"/>
                    <exon start="48569" stop="48341"/>
                    <exon start="47818" stop="47686"/>
                    <exon start="47435" stop="47403"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSLHSLSLSKLSLSKLSLSSAKPFLCLMMDGAQQYNPRTVEEVFRDFKGRRAALVKALTTDVEEFYQQCDPEKENLCLYGFPSESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRADRRRLFNMINDLPTIFEVVSGTAKKQSKDKSSMSNHSSTKSKSNSKFTTMSISKISL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="58893" PGL_stop="52107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58893" e_stop="58850"/>
            <exon e_start="58708" e_stop="58553"/>
            <exon e_start="57821" e_stop="57592"/>
            <exon e_start="57501" e_stop="57462"/>
            <exon e_start="57363" e_stop="57209"/>
            <exon e_start="57111" e_stop="57010"/>
            <exon e_start="56094" e_stop="56050"/>
            <exon e_start="55960" e_stop="55820"/>
            <exon e_start="55083" e_stop="54988"/>
            <exon e_start="54897" e_stop="54796"/>
            <exon e_start="52440" e_stop="52107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.721" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.558" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.083" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58893" e_stop="58850" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.721">
            <gDNA_intron_boundary i_start="58849" i_stop="58709" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58708" e_stop="58553" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.751" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58552" i_stop="57822" i_length="731"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57821" e_stop="57592" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57591" i_stop="57502" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57501" e_stop="57462" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.558">
            <gDNA_intron_boundary i_start="57461" i_stop="57364" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57363" e_stop="57209" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57208" i_stop="57112" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57111" e_stop="57010" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.865">
            <gDNA_intron_boundary i_start="57009" i_stop="56095" i_length="915"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56094" e_stop="56050" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.787" acc_prob="0.083">
            <gDNA_intron_boundary i_start="56049" i_stop="55961" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55960" e_stop="55820" e_length="141"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="55819" i_stop="55084" i_length="736"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55083" e_stop="54988" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54987" i_stop="54898" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54897" e_stop="54796" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54795" i_stop="52441" i_length="2355"/>
          </intron>
          <exon e_serial="11" e_score="0.937">
            <gDNA_exon_boundary e_start="52440" e_stop="52107" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58893" stop="58850"/>
              <exon start="58708" stop="58553"/>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58893" stop="58850"/>
              <exon start="58708" stop="58553"/>
              <exon start="57821" stop="57624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58708" stop="58553"/>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58667" stop="58553"/>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58649" stop="58553"/>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58634" stop="58553"/>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58634" stop="58553"/>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57821" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57747" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57693" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57599" stop="57592"/>
              <exon start="57501" stop="57462"/>
              <exon start="57363" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
              <exon start="55083" stop="54988"/>
              <exon start="54897" stop="54796"/>
              <exon start="52440" stop="52338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57271" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
              <exon start="55083" stop="54988"/>
              <exon start="54897" stop="54796"/>
              <exon start="52440" stop="52255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57271" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
              <exon start="55083" stop="54988"/>
              <exon start="54897" stop="54806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57271" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
              <exon start="55083" stop="54991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57227" stop="57209"/>
              <exon start="57111" stop="57010"/>
              <exon start="56094" stop="56050"/>
              <exon start="55960" stop="55820"/>
              <exon start="55083" stop="54988"/>
              <exon start="54897" stop="54796"/>
              <exon start="52440" stop="52239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52359" stop="52107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTGTGGTCCACTACCTGGATATGTTCGAGCTCATATTGAGA : GTGGTGGATTCAATATTTCCCCACTCAAACCTATTAACGGGAGGCCCAGAACACAAGTGCAACATCTTATGCAGATCGATTTAAAAGGATGGGGTGTGGGCTATGTCTCGTCATTTCAGCAACATTGTCTGTTGCAGATGTTGAACAGTGTGGCTG : GACTTCGTGAATACTTTTCTCAAACTGATGAAAGAACTGCTGCTCCAAGAATCCCAGTTATGGTTAATATGACATCCGCTTCAGTCTCTTCTAAGAGGAATCAAAAACTCCAGGAGACTCCTCATCATCGTACTCGTTCATTGGATCAAATACGAGCTGCAAATAGAAATGCTTCAATGATGGATGAGTACTCTGATGAGGAGGAAGATTTCCAAGGGGCTGATCAAGAG : GTAATGCCACCTAGCCCTGAACGTGAAATGAAGAGAACTG : CACTCGAAGAAGAACCTTTGGATCAAATTGATTTTTCCATCTTTTCGGGTAACCTTCGACGTGATGACCGCGATAATGGTCGTAACTGCTGGAGAATATCTGATGGAAATAACTTCAGAGTTCGTAGCAAGAACTTTTGCTATGATAAATCAAAG : ATTCCTGCTGGTAAACCTCTGATGGATCTTGTTGCTGCTGACTGGTTTAAAGATACAAAACGAATGGACCATGTTGCTAGACGTCCTGGTTGTGCAGCACAA : GTTGCTTCAGAAAAAGGACTGTTTTCTTTAATTTTTAATGTGCAA : GTTCCTGGATCAACACACTACAGCATGGTTTTCTATTTTGTCATGAAAGAGTTAACATCTGGTTCTCTTTTGCAACGGTTTGTTGATGGGGATGACGAGTTCCGTAATAGTAGAATGAAGCTCATCCCGTCTGTGCCAAAG : GGCTCATGGATTGTGCGTCAGAGTGTCGGAAGTACTCCTTGTTTACTGGGGAAGGCAGTTGACTGCACCTATATCCGCGGTCCCAAGTATTTGGAA : ATTGATGTTGATATTGGTTCTTCCACTGTCGCGAATGGAGTTTTGGGGCTTGTGATTGGTGTAATTACGAGCCTAGTAGTTGACATGGCTTTTCTTGTACAG : GGAAACTCTCCCGATGAGTTGCCTGAGCAACTAATAGGCGCTGTACGTGCATCTCATATAGAACTCTCAGCTGCTGTTGTACCAAAATTGGAGCCTGATACTACAGAGTAGGTCAAACCACACACATAGTTCACCTTCTTCAGAAGTTGATTCTTGAAACATACGTATACATAGATGTAGTTCCTTTCTATTTTCGTTCATCGTGTTCTTAAAATTTGTTTCAGCTCAGAATGGAACTAAGTCTGTTTATAGACGTCGACTTCATTAAATTCTTTTTTTTTTCTGTTCTCTTTCGATTATCAGTAAGAGCAATGAACTATTGCCTTATTTCCAG</gDNA_template>
            <first_frame> E  L  W  S  T  T  W  I  C  S  S  S  Y  *  E :   W  W  I  Q  Y  F  P  T  Q  T  Y  *  R  E  A  Q  N  T  S  A  T  S  Y  A  D  R  F  K  R  M  G  C  G  L  C  L  V  I  S  A  T  L  S  V  A  D  V  E  Q  C  G  W :   T  S  *  I  L  F  S  N  *  *  K  N  C  C  S  K  N  P  S  Y  G  *  Y  D  I  R  F  S  L  F  *  E  E  S  K  T  P  G  D  S  S  S  S  Y  S  F  I  G  S  N  T  S  C  K  *  K  C  F  N  D  G  *  V  L  *  *  G  G  R  F  P  R  G  *  S  R   : G  N  A  T  *  P  *  T  *  N  E  E  N  C :   T  R  R  R  T  F  G  S  N  *  F  F  H  L  F  G  *  P  S  T  *  *  P  R  *  W  S  *  L  L  E  N  I  *  W  K  *  L  Q  S  S  *  Q  E  L  L  L  *  *  I  K   : D  S  C  W  *  T  S  D  G  S  C  C  C  *  L  V  *  R  Y  K  T  N  G  P  C  C  *  T  S  W  L  C  S  T   : S  C  F  R  K  R  T  V  F  F  N  F  *  C  A   : S  S  W  I  N  T  L  Q  H  G  F  L  F  C  H  E  R  V  N  I  W  F  S  F  A  T  V  C  *  W  G  *  R  V  P  *  *  *  N  E  A  H  P  V  C  A  K   : G  L  M  D  C  A  S  E  C  R  K  Y  S  L  F  T  G  E  G  S  *  L  H  L  Y  P  R  S  Q  V  F  G   : N  *  C  *  Y  W  F  F  H  C  R  E  W  S  F  G  A  C  D  W  C  N  Y  E  P  S  S  *  H  G  F  S  C  T   : G  K  L  S  R  *  V  A  *  A  T  N  R  R  C  T  C  I  S  Y  R  T  L  S  C  C  C  T  K  I  G  A  *  Y  Y  R  V  G  Q  T  T  H  I  V  H  L  L  Q  K  L  I  L  E  T  Y  V  Y  I  D  V  V  P  F  Y  F  R  S  S  C  S  *  N  L  F  Q  L  R  M  E  L  S  L  F  I  D  V  D  F  I  K  F  F  F  F  S  V  L  F  R  L  S  V  R  A  M  N  Y  C  L  I  S   </first_frame>
            <second_frame>  N  C  G  P  L  P  G  Y  V  R  A  H  I  E   : S  G  G  F  N  I  S  P  L  K  P  I  N  G  R  P  R  T  Q  V  Q  H  L  M  Q  I  D  L  K  G  W  G  V  G  Y  V  S  S  F  Q  Q  H  C  L  L  Q  M  L  N  S  V  A   : G  L  R  E  Y  F  S  Q  T  D  E  R  T  A  A  P  R  I  P  V  M  V  N  M  T  S  A  S  V  S  S  K  R  N  Q  K  L  Q  E  T  P  H  H  R  T  R  S  L  D  Q  I  R  A  A  N  R  N  A  S  M  M  D  E  Y  S  D  E  E  E  D  F  Q  G  A  D  Q  E  :  V  M  P  P  S  P  E  R  E  M  K  R  T   : A  L  E  E  E  P  L  D  Q  I  D  F  S  I  F  S  G  N  L  R  R  D  D  R  D  N  G  R  N  C  W  R  I  S  D  G  N  N  F  R  V  R  S  K  N  F  C  Y  D  K  S  K  :  I  P  A  G  K  P  L  M  D  L  V  A  A  D  W  F  K  D  T  K  R  M  D  H  V  A  R  R  P  G  C  A  A  Q  :  V  A  S  E  K  G  L  F  S  L  I  F  N  V  Q  :  V  P  G  S  T  H  Y  S  M  V  F  Y  F  V  M  K  E  L  T  S  G  S  L  L  Q  R  F  V  D  G  D  D  E  F  R  N  S  R  M  K  L  I  P  S  V  P  K  :  G  S  W  I  V  R  Q  S  V  G  S  T  P  C  L  L  G  K  A  V  D  C  T  Y  I  R  G  P  K  Y  L  E  :  I  D  V  D  I  G  S  S  T  V  A  N  G  V  L  G  L  V  I  G  V  I  T  S  L  V  V  D  M  A  F  L  V  Q  :  G  N  S  P  D  E  L  P  E  Q  L  I  G  A  V  R  A  S  H  I  E  L  S  A  A  V  V  P  K  L  E  P  D  T  T  E  *  V  K  P  H  T  *  F  T  F  F  R  S  *  F  L  K  H  T  Y  T  *  M  *  F  L  S  I  F  V  H  R  V  L  K  I  C  F  S  S  E  W  N  *  V  C  L  *  T  S  T  S  L  N  S  F  F  F  L  F  S  F  D  Y  Q  *  E  Q  *  T  I  A  L  F  P  </second_frame>
            <third_frame>   I  V  V  H  Y  L  D  M  F  E  L  I  L  R  :  V  V  D  S  I  F  P  H  S  N  L  L  T  G  G  P  E  H  K  C  N  I  L  C  R  S  I  *  K  D  G  V  W  A  M  S  R  H  F  S  N  I  V  C  C  R  C  *  T  V  W  L  :  D  F  V  N  T  F  L  K  L  M  K  E  L  L  L  Q  E  S  Q  L  W  L  I  *  H  P  L  Q  S  L  L  R  G  I  K  N  S  R  R  L  L  I  I  V  L  V  H  W  I  K  Y  E  L  Q  I  E  M  L  Q  *  W  M  S  T  L  M  R  R  K  I  S  K  G  L  I  K  R :   *  C  H  L  A  L  N  V  K  *  R  E  L  :  H  S  K  K  N  L  W  I  K  L  I  F  P  S  F  R  V  T  F  D  V  M  T  A  I  M  V  V  T  A  G  E  Y  L  M  E  I  T  S  E  F  V  A  R  T  F  A  M  I  N  Q  R :   F  L  L  V  N  L  *  W  I  L  L  L  L  T  G  L  K  I  Q  N  E  W  T  M  L  L  D  V  L  V  V  Q  H  K :   L  L  Q  K  K  D  C  F  L  *  F  L  M  C  K :   F  L  D  Q  H  T  T  A  W  F  S  I  L  S  *  K  S  *  H  L  V  L  F  C  N  G  L  L  M  G  M  T  S  S  V  I  V  E  *  S  S  S  R  L  C  Q  R :   A  H  G  L  C  V  R  V  S  E  V  L  L  V  Y  W  G  R  Q  L  T  A  P  I  S  A  V  P  S  I  W  K :   L  M  L  I  L  V  L  P  L  S  R  M  E  F  W  G  L  *  L  V  *  L  R  A  *  *  L  T  W  L  F  L  Y  R :   E  T  L  P  M  S  C  L  S  N  *  *  A  L  Y  V  H  L  I  *  N  S  Q  L  L  L  Y  Q  N  W  S  L  I  L  Q  S  R  S  N  H  T  H  S  S  P  S  S  E  V  D  S  *  N  I  R  I  H  R  C  S  S  F  L  F  S  F  I  V  F  L  K  F  V  S  A  Q  N  G  T  K  S  V  Y  R  R  R  L  H  *  I  L  F  F  F  C  S  L  S  I  I  S  K  S  N  E  L  L  P  Y  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58892" stop="58850"/>
                    <exon start="58708" stop="58553"/>
                    <exon start="57821" stop="57592"/>
                    <exon start="57501" stop="57462"/>
                    <exon start="57363" stop="57209"/>
                    <exon start="57111" stop="57010"/>
                    <exon start="56094" stop="56050"/>
                    <exon start="55960" stop="55820"/>
                    <exon start="55083" stop="54988"/>
                    <exon start="54897" stop="54796"/>
                    <exon start="52440" stop="52330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1218</number_coding_nucleotides>
                  <number_encoded_amino_acids>406</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NCGPLPGYVRAHIESGGFNISPLKPINGRPRTQVQHLMQIDLKGWGVGYVSSFQQHCLLQMLNSVAGLREYFSQTDERTAAPRIPVMVNMTSASVSSKRNQKLQETPHHRTRSLDQIRAANRNASMMDEYSDEEEDFQGADQEVMPPSPEREMKRTALEEEPLDQIDFSIFSGNLRRDDRDNGRNCWRISDGNNFRVRSKNFCYDKSKIPAGKPLMDLVAADWFKDTKRMDHVARRPGCAAQVASEKGLFSLIFNVQVPGSTHYSMVFYFVMKELTSGSLLQRFVDGDDEFRNSRMKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCTYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITSLVVDMAFLVQGNSPDELPEQLIGAVRASHIELSAAVVPKLEPDTTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="65580" PGL_stop="61801"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65580" e_stop="65497"/>
            <exon e_start="64786" e_stop="64712"/>
            <exon e_start="62836" e_stop="62783"/>
            <exon e_start="62079" e_stop="62014"/>
            <exon e_start="61896" e_stop="61801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.892" acc_prob="0.974" e_score="0.964"/>
          <exon-intron don_prob="0.989" acc_prob="0.925" e_score="0.960"/>
          <exon-intron don_prob="0.935" acc_prob="0.990" e_score="0.963"/>
          <exon-intron don_prob="0.963" acc_prob="0.373" e_score="0.955"/>
          <exon-only e_score="0.823"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="65580" e_stop="65497" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.892" acc_prob="0.974">
            <gDNA_intron_boundary i_start="65496" i_stop="64787" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="0.960">
            <gDNA_exon_boundary e_start="64786" e_stop="64712" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.925">
            <gDNA_intron_boundary i_start="64711" i_stop="62837" i_length="1875"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="62836" e_stop="62783" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.990">
            <gDNA_intron_boundary i_start="62782" i_stop="62080" i_length="703"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="62079" e_stop="62014" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.373">
            <gDNA_intron_boundary i_start="62013" i_stop="61897" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="0.823">
            <gDNA_exon_boundary e_start="61896" e_stop="61801" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65580" stop="65497"/>
              <exon start="64786" stop="64712"/>
              <exon start="62836" stop="62783"/>
              <exon start="62079" stop="62014"/>
              <exon start="61896" stop="61801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAGATCCTATATTCATATGCGGTATTTTGTTCTGGAGACGCGATTGTTGGCTTACTACAAGAGAAAGCCTCAGGATAATGTG : GTTCCAATCAAGACACTTCCCATCGATGGTAATTGTCGGGTGGAGGACCGAGGCCTGAAGACTCATCATGGACAC : ATGGTTTATGTCTTATCAGTTTACAACAAGAAAGACAAGTATAACCGTGTCACG : ATGGCAGCTTTCAACATTCAGGAGGCACTTATTTGGAAAGAAAAAATTGAATCAATCATTGATCAG : CATCAGGAGTCTCAAGGAACTAATGGCAATAAGTACAATTCGTTTGAGTATAAATCTGATATGGACAATGGAAGGAATGCTTCCTCATCAGATCAT</gDNA_template>
            <first_frame> G  R  S  Y  I  H  M  R  Y  F  V  L  E  T  R  L  L  A  Y  Y  K  R  K  P  Q  D  N  V  :  V  P  I  K  T  L  P  I  D  G  N  C  R  V  E  D  R  G  L  K  T  H  H  G  H  :  M  V  Y  V  L  S  V  Y  N  K  K  D  K  Y  N  R  V  T  :  M  A  A  F  N  I  Q  E  A  L  I  W  K  E  K  I  E  S  I  I  D  Q  :  H  Q  E  S  Q  G  T  N  G  N  K  Y  N  S  F  E  Y  K  S  D  M  D  N  G  R  N  A  S  S  S  D  H </first_frame>
            <second_frame>  A  D  P  I  F  I  C  G  I  L  F  W  R  R  D  C  W  L  T  T  R  E  S  L  R  I  M  W :   F  Q  S  R  H  F  P  S  M  V  I  V  G  W  R  T  E  A  *  R  L  I  M  D  T :   W  F  M  S  Y  Q  F  T  T  R  K  T  S  I  T  V  S  R :   W  Q  L  S  T  F  R  R  H  L  F  G  K  K  K  L  N  Q  S  L  I  S :   I  R  S  L  K  E  L  M  A  I  S  T  I  R  L  S  I  N  L  I  W  T  M  E  G  M  L  P  H  Q  I   </second_frame>
            <third_frame>   Q  I  L  Y  S  Y  A  V  F  C  S  G  D  A  I  V  G  L  L  Q  E  K  A  S  G  *  C   : G  S  N  Q  D  T  S  H  R  W  *  L  S  G  G  G  P  R  P  E  D  S  S  W  T   : H  G  L  C  L  I  S  L  Q  Q  E  R  Q  V  *  P  C  H   : D  G  S  F  Q  H  S  G  G  T  Y  L  E  R  K  N  *  I  N  H  *  S   : A  S  G  V  S  R  N  *  W  Q  *  V  Q  F  V  *  V  *  I  *  Y  G  Q  W  K  E  C  F  L  I  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65580" stop="65497"/>
                    <exon start="64786" stop="64712"/>
                    <exon start="62836" stop="62783"/>
                    <exon start="62079" stop="62014"/>
                    <exon start="61896" stop="61801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRSYIHMRYFVLETRLLAYYKRKPQDNVVPIKTLPIDGNCRVEDRGLKTHHGHMVYVLSVYNKKDKYNRVTMAAFNIQEALIWKEKIESIIDQHQESQGTNGNKYNSFEYKSDMDNGRNASSSDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73627" PGL_stop="67779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73627" e_stop="73554"/>
            <exon e_start="71871" e_stop="71823"/>
            <exon e_start="70985" e_stop="70877"/>
            <exon e_start="69749" e_stop="69656"/>
            <exon e_start="69048" e_stop="68915"/>
            <exon e_start="68537" e_stop="68374"/>
            <exon e_start="67995" e_stop="67779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.421" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73627" e_stop="73554" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.421" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73553" i_stop="71872" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71871" e_stop="71823" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.998">
            <gDNA_intron_boundary i_start="71822" i_stop="70986" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70985" e_stop="70877" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="70876" i_stop="69750" i_length="1127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69749" e_stop="69656" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69655" i_stop="69049" i_length="607"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69048" e_stop="68915" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68914" i_stop="68538" i_length="377"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68537" e_stop="68374" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68373" i_stop="67996" i_length="378"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67995" e_stop="67779" e_length="217"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73627" stop="73554"/>
              <exon start="71871" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73627" stop="73554"/>
              <exon start="71871" stop="71823"/>
              <exon start="70985" stop="70877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73626" stop="73554"/>
              <exon start="71871" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73626" stop="73554"/>
              <exon start="71871" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73625" stop="73554"/>
              <exon start="71871" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73587" stop="73554"/>
              <exon start="71871" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71870" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71870" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71870" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71870" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71870" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71870" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71869" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71869" stop="71823"/>
              <exon start="70985" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70908" stop="70877"/>
              <exon start="69749" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69678" stop="69656"/>
              <exon start="69048" stop="68915"/>
              <exon start="68537" stop="68374"/>
              <exon start="67995" stop="67783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68474" stop="68374"/>
              <exon start="67995" stop="67783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67962" stop="67779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67928" stop="67779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395057" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAAATCATTTTTTAGAAATCCATTTTTCATATATATAATTTTTTTAAAATGAGTCTATTTGGTCTTGGAAG : GAATCAGAGAACATTCCGTCCCAAAAAGAGTGCACCCTCAGGGAGTAAG : GGTGCACAATTAAGACAGCACATTGATTCTACTTTAGGCAGCGGAAACTTGAGAGAGGCTGTAAGGCTTCCTCCTGGGGAAGATATTAATGAATGGCTAGCTGTCAACA : CTGTAGATTTCTTCAACCAGGTGAATCTGCTTTATGGCACCCTCACTGAGTTCTGTACACCAGAAAACTGCCCAACAATGACTGCAGGCCCCAA : GTATGAGTATAGGTGGGCTGATGGTGTACAAATCAAGAAGCCTATTGAAGTTTCTGCTCCGAAATATGTTGAATATTTGATGGACTGGATTGAAACTCAATTGGATGATGAATCTTTATTTCCTCAAAGGCTTG : GTGCACCTTTTCCACCTAACTTCAAGGATGTTGTCAAGACGATATTCAAACGTCTCTTTCGTGTATATGCACATATCTATCACTCCCATTTTCAGAAGATCGTGAGTCTTAAGGAGGAAGCACATTTGAATACGTGCTTCAAGCATTTCATTCTCTTCACCCAT : GAATTTGGGTTGATTGACAAAAAGGAGCTAGCTCCACTCCAAGATCTCATAGATTCTATTATTGTGCCTTACTAATCATCTTCTTTCAGTTTTTGCTTTTAACCTATTTTTAATAGGAAATTAATGAGTATGGTGTGATAAAAATGTATTTTTACCATTCTATAATAAGTATGTAGTCTAAAAGTTTGACATTTTAATATCATTATTGATATTGTGC</gDNA_template>
            <first_frame> R  K  I  I  F  *  K  S  I  F  H  I  Y  N  F  F  K  M  S  L  F  G  L  G  R :   N  Q  R  T  F  R  P  K  K  S  A  P  S  G  S  K  :  G  A  Q  L  R  Q  H  I  D  S  T  L  G  S  G  N  L  R  E  A  V  R  L  P  P  G  E  D  I  N  E  W  L  A  V  N   : T  V  D  F  F  N  Q  V  N  L  L  Y  G  T  L  T  E  F  C  T  P  E  N  C  P  T  M  T  A  G  P  K :   Y  E  Y  R  W  A  D  G  V  Q  I  K  K  P  I  E  V  S  A  P  K  Y  V  E  Y  L  M  D  W  I  E  T  Q  L  D  D  E  S  L  F  P  Q  R  L   : G  A  P  F  P  P  N  F  K  D  V  V  K  T  I  F  K  R  L  F  R  V  Y  A  H  I  Y  H  S  H  F  Q  K  I  V  S  L  K  E  E  A  H  L  N  T  C  F  K  H  F  I  L  F  T  H  :  E  F  G  L  I  D  K  K  E  L  A  P  L  Q  D  L  I  D  S  I  I  V  P  Y  *  S  S  S  F  S  F  C  F  *  P  I  F  N  R  K  L  M  S  M  V  *  *  K  C  I  F  T  I  L  *  *  V  C  S  L  K  V  *  H  F  N  I  I  I  D  I  V  </first_frame>
            <second_frame>  E  K  S  F  F  R  N  P  F  F  I  Y  I  I  F  L  K  *  V  Y  L  V  L  E   : G  I  R  E  H  S  V  P  K  R  V  H  P  Q  G  V  R :   V  H  N  *  D  S  T  L  I  L  L  *  A  A  E  T  *  E  R  L  *  G  F  L  L  G  K  I  L  M  N  G  *  L  S  T  :  L  *  I  S  S  T  R  *  I  C  F  M  A  P  S  L  S  S  V  H  Q  K  T  A  Q  Q  *  L  Q  A  P   : S  M  S  I  G  G  L  M  V  Y  K  S  R  S  L  L  K  F  L  L  R  N  M  L  N  I  *  W  T  G  L  K  L  N  W  M  M  N  L  Y  F  L  K  G  L  :  V  H  L  F  H  L  T  S  R  M  L  S  R  R  Y  S  N  V  S  F  V  Y  M  H  I  S  I  T  P  I  F  R  R  S  *  V  L  R  R  K  H  I  *  I  R  A  S  S  I  S  F  S  S  P  M :   N  L  G  *  L  T  K  R  S  *  L  H  S  K  I  S  *  I  L  L  L  C  L  T  N  H  L  L  S  V  F  A  F  N  L  F  L  I  G  N  *  *  V  W  C  D  K  N  V  F  L  P  F  Y  N  K  Y  V  V  *  K  F  D  I  L  I  S  L  L  I  L  C </second_frame>
            <third_frame>   K  N  H  F  L  E  I  H  F  S  Y  I  *  F  F  *  N  E  S  I  W  S  W  K  :  E  S  E  N  I  P  S  Q  K  E  C  T  L  R  E  *   : G  C  T  I  K  T  A  H  *  F  Y  F  R  Q  R  K  L  E  R  G  C  K  A  S  S  W  G  R  Y  *  *  M  A  S  C  Q  H :   C  R  F  L  Q  P  G  E  S  A  L  W  H  P  H  *  V  L  Y  T  R  K  L  P  N  N  D  C  R  P  Q  :  V  *  V  *  V  G  *  W  C  T  N  Q  E  A  Y  *  S  F  C  S  E  I  C  *  I  F  D  G  L  D  *  N  S  I  G  *  *  I  F  I  S  S  K  A  W :   C  T  F  S  T  *  L  Q  G  C  C  Q  D  D  I  Q  T  S  L  S  C  I  C  T  Y  L  S  L  P  F  S  E  D  R  E  S  *  G  G  S  T  F  E  Y  V  L  Q  A  F  H  S  L  H  P   : *  I  W  V  D  *  Q  K  G  A  S  S  T  P  R  S  H  R  F  Y  Y  C  A  L  L  I  I  F  F  Q  F  L  L  L  T  Y  F  *  *  E  I  N  E  Y  G  V  I  K  M  Y  F  Y  H  S  I  I  S  M  *  S  K  S  L  T  F  *  Y  H  Y  *  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73609" stop="73554"/>
                    <exon start="71871" stop="71823"/>
                    <exon start="70985" stop="70877"/>
                    <exon start="69749" stop="69656"/>
                    <exon start="69048" stop="68915"/>
                    <exon start="68537" stop="68374"/>
                    <exon start="67995" stop="67921"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSIFHIYNFFKMSLFGLGRNQRTFRPKKSAPSGSKGAQLRQHIDSTLGSGNLREAVRLPPGEDINEWLAVNTVDFFNQVNLLYGTLTEFCTPENCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDESLFPQRLGAPFPPNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEFGLIDKKELAPLQDLIDSIIVPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="76277" PGL_stop="79592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76277" e_stop="76783"/>
            <exon e_start="78147" e_stop="78537"/>
            <exon e_start="79478" e_stop="79509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.653" e_score="0.903"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76277" e_stop="76783" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="78147" e_stop="78537" e_length="391"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.653">
            <gDNA_intron_boundary i_start="78538" i_stop="79477" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79478" e_stop="79509" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76277" stop="76783"/>
              <exon start="78147" stop="78407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76292" stop="76783"/>
              <exon start="78147" stop="78171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76485" stop="76783"/>
              <exon start="78147" stop="78365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76554" stop="76783"/>
              <exon start="78147" stop="78537"/>
              <exon start="79478" stop="79509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76554" stop="76783"/>
              <exon start="78147" stop="78537"/>
              <exon start="79478" stop="79506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76581" stop="76783"/>
              <exon start="78147" stop="78370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76631" stop="76783"/>
              <exon start="78147" stop="78444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT : TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATTCTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGCCTCCCACCTATGCAATAGATAGCAAGGGGTATGG : GTATTTCCATGGAATGACTGCTGATGCTGATG</gDNA_template>
            <first_frame> M  S  Q  C  F  L  L  A  *  S  L  N  *  L  I  Q  I  C  T  K  S  T  S  K  I  S  I  F  K  L  M  E  V  L  I  K  L  N  Q  P  P  *  *  *  L  S  K  T  L  D  L  S  P  Y  *  V  T  P  T  T  F  A  L  Y  I  S  Y  T  E  S  L  K  H  L  Y  I  N  S  S  G  D  N  N  F  W  V  Q  L  F  L  V  N  C  E  V  G  I  W  G  F  L  F  S  F  L  G  G  R  *  V  W  R  R  R  M  G  T  D  R  R  S  R  L  C  S  G  R  N  W  S  I  K  L  *  Y  I  S  I  W  W  L  V  F  R  C  R  R  T  L  L  C  L  Y  D  V  A  L  N  P  F  Q  Q  G  S  F  I  I  L  A  :  W  G  T  V  P  I  M  G  R  S  L  I  L  S  Q  E  G  V  E  G  Q  M  E  R  S  G  G  A  P  K  M  H  I  L  T  Q  S  I  A  S  G  T  C  I  E  A  A  T  V  Q  E  S  M  W  N  L  N  R  L  P  S  P  C  *  L  V  C  H  I  I  L  L  G  A  L  L  G  A  A  K  Q  A  A  I  S  N  V  T  A  V  K  A  S  R  T  R  H  Y  I  L  L  L  I  L  K  D  Q  V  M  E  V  P  Q  Q  R  C  R  W  S  L  P  P  M  Q  *  I  A  R  G  M   : G  I  S  M  E  *  L  L  M  L  M </first_frame>
            <second_frame>  C  P  N  A  S  F  *  L  N  L  S  I  N  S  S  K  F  V  L  N  Q  P  Q  K  S  P  F  L  S  *  W  R  Y  *  S  N  L  I  N  P  L  N  D  N  Y  P  K  P  *  I  C  P  L  I  R  *  L  Q  Q  L  L  L  S  I  S  H  T  L  K  V  *  N  T  F  I  L  T  P  V  V  I  I  I  S  G  Y  S  F  F  W  *  I  V  K  W  V  F  G  D  F  C  F  L  F  *  V  G  D  E  Y  G  G  G  E  W  V  Q  T  A  V  H  G  C  A  V  A  G  I  G  A  S  S  Y  D  I  *  V  F  G  G  W  Y  S  G  A  G  G  P  C  C  A  Y  T  T  *  L  *  T  H  F  S  K  V  L  S  S  S  *  L :   G  V  L  F  L  L  W  E  E  V  *  S  *  A  R  K  V  *  K  D  R  W  K  E  V  E  V  R  Q  R  C  I  S  *  L  K  V  L  R  A  A  H  A  S  R  P  Q  P  F  K  K  A  C  G  I  S  I  D  C  P  V  L  V  D  *  Y  V  T  *  Y  Y  W  E  H  Y  W  E  Q  Q  N  K  R  Q  F  P  T  *  Q  Q  *  K  L  P  E  H  A  T  I  F  C  C  *  F  *  R  T  K  L  W  K  C  H  N  K  D  A  D  G  A  S  H  L  C  N  R  *  Q  G  V  W  :  V  F  P  W  N  D  C  *  C  *   </second_frame>
            <third_frame>   V  P  M  L  P  F  S  L  I  S  Q  L  T  H  P  N  L  Y  *  I  N  L  K  N  L  H  F  *  A  N  G  G  T  N  Q  T  *  S  T  P  L  M  I  I  I  Q  N  P  R  S  V  P  L  L  G  N  S  N  N  F  C  S  L  Y  L  I  H  *  K  S  E  T  P  L  Y  *  L  Q  W  *  *  *  F  L  G  T  A  F  F  G  E  L  *  S  G  Y  L  G  I  F  V  F  F  F  R  W  E  M  S  M  A  A  E  N  G  Y  R  P  P  F  T  A  V  Q  W  Q  E  L  E  H  Q  A  M  I  Y  K  Y  L  V  A  G  I  P  V  P  A  D  L  V  V  P  I  R  R  S  F  E  P  I  S  A  R  F  F  H  H  P  S   : L  G  Y  C  S  Y  Y  G  K  K  F  D  P  E  P  G  R  C  R  R  T  D  G  K  K  W  R  C  A  K  D  A  Y  P  D  S  K  Y  C  E  R  H  M  H  R  G  R  N  R  S  R  K  H  V  E  S  Q  S  T  A  Q  S  L  L  T  S  M  S  H  N  T  T  G  S  T  T  G  S  S  K  T  S  G  N  F  Q  R  N  S  S  E  S  F  Q  N  T  P  L  Y  S  A  A  N  S  E  G  P  S  Y  G  S  A  T  T  K  M  Q  M  E  P  P  T  Y  A  I  D  S  K  G  Y  G :   Y  F  H  G  M  T  A  D  A  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76558" stop="76783"/>
                    <exon start="78147" stop="78537"/>
                    <exon start="79478" stop="79508"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYLGIFVFFFRWEMSMAAENGYRPPFTAVQWQELEHQAMIYKYLVAGIPVPADLVVPIRRSFEPISARFFHHPSLGYCSYYGKKFDPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKHVESQSTAQSLLTSMSHNTTGSTTGSSKTSGNFQRNSSESFQNTPLYSAANSEGPSYGSATTKMQMEPPTYAIDSKGYGYFHGMTADAD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76277" e_stop="76783"/>
            <exon e_start="78147" e_stop="78531"/>
            <exon e_start="79478" e_stop="79592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.653" e_score="0.896"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76277" e_stop="76783" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.932">
            <gDNA_intron_boundary i_start="76784" i_stop="78146" i_length="1363"/>
          </intron>
          <exon e_serial="2" e_score="0.896">
            <gDNA_exon_boundary e_start="78147" e_stop="78531" e_length="385"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.653">
            <gDNA_intron_boundary i_start="78532" i_stop="79477" i_length="946"/>
          </intron>
          <exon e_serial="3" e_score="0.948">
            <gDNA_exon_boundary e_start="79478" e_stop="79592" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76277" stop="76783"/>
              <exon start="78147" stop="78407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76292" stop="76783"/>
              <exon start="78147" stop="78171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76485" stop="76783"/>
              <exon start="78147" stop="78365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76560" stop="76783"/>
              <exon start="78147" stop="78531"/>
              <exon start="79478" stop="79592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76581" stop="76783"/>
              <exon start="78147" stop="78370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76631" stop="76783"/>
              <exon start="78147" stop="78444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCCCAATGCTTCCTTTTAGCTTAATCTCTCAATTAACTCATCCAAATTTGTACTAAATCAACCTCAAAAATCTCCATTTTTAAGCTAATGGAGGTACTAATCAAACTTAATCAACCCCCTTAATGATAATTATCCAAAACCCTAGATCTGTCCCCTTATTAGGTAACTCCAACAACTTTTGCTCTCTATATCTCATACACTGAAAGTCTGAAACACCTTTATATTAACTCCAGTGGTGATAATAATTTCTGGGTACAGCTTTTTTTGGTGAATTGTGAAGTGGGTATTTGGGGATTTTTGTTTTCTTTTTTAGGTGGGAGATGAGTATGGCGGCGGAGAATGGGTACAGACCGCCGTTCACGGCTGTGCAGTGGCAGGAATTGGAGCATCAAGCTATGATATATAAGTATTTGGTGGCTGGTATTCCGGTGCCGGCGGACCTTGTTGTGCCTATACGACGTAGCTTTGAACCCATTTCAGCAAGGTTCTTTCATCATCCTAGCT : TGGGGTACTGTTCCTATTATGGGAAGAAGTTTGATCCTGAGCCAGGAAGGTGTAGAAGGACAGATGGAAAGAAGTGGAGGTGCGCCAAAGATGCATATCCTGACTCAAAGTATTGCGAGCGGCACATGCATCGAGGCCGCAACCGTTCAAGAAAGCATGTGGAATCTCAATCGACTGCCCAGTCCTTGTTGACTAGTATGTCACATAATACTACTGGGAGCACTACTGGGAGCAGCAAAACAAGCGGCAATTTCCAACGTAACAGCAGTGAAAGCTTCCAGAACACGCCACTATATTCTGCTGCTAATTCTGAAGGACCAAGTTATGGAAGTGCCACAACAAAGATGCAGATGGAGCCTCCCACCTATGCAATAGATAGCAAGGG : GTATTTCCATGGAATGACTGCTGATGCTGATGAGCAGAATTTCTCTCTCGAAGCTTCGGAAGGCACGAGAAGTTTAGGTATGGGTTCTAACACAGACAGCATGTGGTGTCTGATG</gDNA_template>
            <first_frame> M  S  Q  C  F  L  L  A  *  S  L  N  *  L  I  Q  I  C  T  K  S  T  S  K  I  S  I  F  K  L  M  E  V  L  I  K  L  N  Q  P  P  *  *  *  L  S  K  T  L  D  L  S  P  Y  *  V  T  P  T  T  F  A  L  Y  I  S  Y  T  E  S  L  K  H  L  Y  I  N  S  S  G  D  N  N  F  W  V  Q  L  F  L  V  N  C  E  V  G  I  W  G  F  L  F  S  F  L  G  G  R  *  V  W  R  R  R  M  G  T  D  R  R  S  R  L  C  S  G  R  N  W  S  I  K  L  *  Y  I  S  I  W  W  L  V  F  R  C  R  R  T  L  L  C  L  Y  D  V  A  L  N  P  F  Q  Q  G  S  F  I  I  L  A  :  W  G  T  V  P  I  M  G  R  S  L  I  L  S  Q  E  G  V  E  G  Q  M  E  R  S  G  G  A  P  K  M  H  I  L  T  Q  S  I  A  S  G  T  C  I  E  A  A  T  V  Q  E  S  M  W  N  L  N  R  L  P  S  P  C  *  L  V  C  H  I  I  L  L  G  A  L  L  G  A  A  K  Q  A  A  I  S  N  V  T  A  V  K  A  S  R  T  R  H  Y  I  L  L  L  I  L  K  D  Q  V  M  E  V  P  Q  Q  R  C  R  W  S  L  P  P  M  Q  *  I  A  R   : G  I  S  M  E  *  L  L  M  L  M  S  R  I  S  L  S  K  L  R  K  A  R  E  V  *  V  W  V  L  T  Q  T  A  C  G  V  *   </first_frame>
            <second_frame>  C  P  N  A  S  F  *  L  N  L  S  I  N  S  S  K  F  V  L  N  Q  P  Q  K  S  P  F  L  S  *  W  R  Y  *  S  N  L  I  N  P  L  N  D  N  Y  P  K  P  *  I  C  P  L  I  R  *  L  Q  Q  L  L  L  S  I  S  H  T  L  K  V  *  N  T  F  I  L  T  P  V  V  I  I  I  S  G  Y  S  F  F  W  *  I  V  K  W  V  F  G  D  F  C  F  L  F  *  V  G  D  E  Y  G  G  G  E  W  V  Q  T  A  V  H  G  C  A  V  A  G  I  G  A  S  S  Y  D  I  *  V  F  G  G  W  Y  S  G  A  G  G  P  C  C  A  Y  T  T  *  L  *  T  H  F  S  K  V  L  S  S  S  *  L :   G  V  L  F  L  L  W  E  E  V  *  S  *  A  R  K  V  *  K  D  R  W  K  E  V  E  V  R  Q  R  C  I  S  *  L  K  V  L  R  A  A  H  A  S  R  P  Q  P  F  K  K  A  C  G  I  S  I  D  C  P  V  L  V  D  *  Y  V  T  *  Y  Y  W  E  H  Y  W  E  Q  Q  N  K  R  Q  F  P  T  *  Q  Q  *  K  L  P  E  H  A  T  I  F  C  C  *  F  *  R  T  K  L  W  K  C  H  N  K  D  A  D  G  A  S  H  L  C  N  R  *  Q  G  :  V  F  P  W  N  D  C  *  C  *  *  A  E  F  L  S  R  S  F  G  R  H  E  K  F  R  Y  G  F  *  H  R  Q  H  V  V  S  D  </second_frame>
            <third_frame>   V  P  M  L  P  F  S  L  I  S  Q  L  T  H  P  N  L  Y  *  I  N  L  K  N  L  H  F  *  A  N  G  G  T  N  Q  T  *  S  T  P  L  M  I  I  I  Q  N  P  R  S  V  P  L  L  G  N  S  N  N  F  C  S  L  Y  L  I  H  *  K  S  E  T  P  L  Y  *  L  Q  W  *  *  *  F  L  G  T  A  F  F  G  E  L  *  S  G  Y  L  G  I  F  V  F  F  F  R  W  E  M  S  M  A  A  E  N  G  Y  R  P  P  F  T  A  V  Q  W  Q  E  L  E  H  Q  A  M  I  Y  K  Y  L  V  A  G  I  P  V  P  A  D  L  V  V  P  I  R  R  S  F  E  P  I  S  A  R  F  F  H  H  P  S   : L  G  Y  C  S  Y  Y  G  K  K  F  D  P  E  P  G  R  C  R  R  T  D  G  K  K  W  R  C  A  K  D  A  Y  P  D  S  K  Y  C  E  R  H  M  H  R  G  R  N  R  S  R  K  H  V  E  S  Q  S  T  A  Q  S  L  L  T  S  M  S  H  N  T  T  G  S  T  T  G  S  S  K  T  S  G  N  F  Q  R  N  S  S  E  S  F  Q  N  T  P  L  Y  S  A  A  N  S  E  G  P  S  Y  G  S  A  T  T  K  M  Q  M  E  P  P  T  Y  A  I  D  S  K  G :   Y  F  H  G  M  T  A  D  A  D  E  Q  N  F  S  L  E  A  S  E  G  T  R  S  L  G  M  G  S  N  T  D  S  M  W  C  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76558" stop="76783"/>
                    <exon start="78147" stop="78531"/>
                    <exon start="79478" stop="79592"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGYLGIFVFFFRWEMSMAAENGYRPPFTAVQWQELEHQAMIYKYLVAGIPVPADLVVPIRRSFEPISARFFHHPSLGYCSYYGKKFDPEPGRCRRTDGKKWRCAKDAYPDSKYCERHMHRGRNRSRKHVESQSTAQSLLTSMSHNTTGSTTGSSKTSGNFQRNSSESFQNTPLYSAANSEGPSYGSATTKMQMEPPTYAIDSKGYFHGMTADADEQNFSLEASEGTRSLGMGSNTDSMWCLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="88135" PGL_stop="84576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88135" e_stop="88053"/>
            <exon e_start="86540" e_stop="86294"/>
            <exon e_start="86136" e_stop="85864"/>
            <exon e_start="84914" e_stop="84576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88135" e_stop="88053" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="88052" i_stop="86541" i_length="1512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86540" e_stop="86294" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.951">
            <gDNA_intron_boundary i_start="86293" i_stop="86137" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86136" e_stop="85864" e_length="273"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.985">
            <gDNA_intron_boundary i_start="85863" i_stop="84915" i_length="949"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84914" e_stop="84576" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88135" stop="88053"/>
              <exon start="86540" stop="86294"/>
              <exon start="86136" stop="85864"/>
              <exon start="84914" stop="84576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88134" stop="88053"/>
              <exon start="86540" stop="86294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88121" stop="88053"/>
              <exon start="86540" stop="86294"/>
              <exon start="86136" stop="86066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88082" stop="88053"/>
              <exon start="86540" stop="86294"/>
              <exon start="86136" stop="85898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88081" stop="88053"/>
              <exon start="86540" stop="86294"/>
              <exon start="86136" stop="85908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86534" stop="86294"/>
              <exon start="86136" stop="85899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86396" stop="86294"/>
              <exon start="86136" stop="85864"/>
              <exon start="84914" stop="84593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTACTATATTAACAAAATTTCAATTTCAAATAATTTTTCCTTCGAGCTTCGCGAACATTACACTGAGCAGCACCCTTTCATG : GTAGAGATGATTATAAAGGGTCTGTTCAGGAGATACGAAAGATGGAATCCAGTGCATCCTACATATGGAGCCTTCTGGGGCATGGGAATAGGCGTTGGCTGTGGGGTGGGATGGGGTCCTGGATTTGGTCCTGAGGCTATTGGTTATGTTGGAGCTGGATGTGGTGTTGGATTCAGCGTTGGCTTCTCTCTGCTCGGCGTTGGCATTGGTCTACCTGCCAATTACATTTACACAGGTCCTTACAATG : CATTCACAGCTGCCAGAAGTGGTGCTATTGAGATGTCTCGATCAACTGATATTCGAAGCATGAGAAACATTGTGGAAGAGAGTCGGTGTTACCTCGATTCAAATATTGCTGGCTTCCAAGAAAGAGTGATTCAGTCTTTTTCAAGCATAAGGTTCAAAGAATCAGTAGGGAAGGCGGTAGATTCGTCTGAAATGCCAATCAAAATGTCTTTTCCGGATCAATGCATGGATCGTCTAAAACAAGGCATCAATAGCTTATTTCATCCTTGCAAAG : GTTCAAAGGATTAAGCAACATGTTGAGGAGCACAATCCCAGAAGGGTTAATATACATTGCACACTTCACAGCATTGGCCTTAGTTTTTTTGCCTTCCCACAGATAGTAGGGAGCATATAGGTAGAAGAAAAAAGAGCATTTACAGTTGCAGTTGTTAACATGCTTTCATTTCTTTTAGTTTGGTAAACATTGTTTGAATGAAAGTGAGAATTTGAATTAATACGGAAAAGGGTCAAAAATGTCTCTGAACTATCGCGAAAGGTCATAATATACCCTTCGTCTTTGTCCATCTATTATGCTAATAATACTTTTCGGATTTTTAGTACTGTGTGTATGTAA</gDNA_template>
            <first_frame> T  T  I  L  T  K  F  Q  F  Q  I  I  F  P  S  S  F  A  N  I  T  L  S  S  T  L  S  W :   *  R  *  L  *  R  V  C  S  G  D  T  K  D  G  I  Q  C  I  L  H  M  E  P  S  G  A  W  E  *  A  L  A  V  G  W  D  G  V  L  D  L  V  L  R  L  L  V  M  L  E  L  D  V  V  L  D  S  A  L  A  S  L  C  S  A  L  A  L  V  Y  L  P  I  T  F  T  Q  V  L  T  M  :  H  S  Q  L  P  E  V  V  L  L  R  C  L  D  Q  L  I  F  E  A  *  E  T  L  W  K  R  V  G  V  T  S  I  Q  I  L  L  A  S  K  K  E  *  F  S  L  F  Q  A  *  G  S  K  N  Q  *  G  R  R  *  I  R  L  K  C  Q  S  K  C  L  F  R  I  N  A  W  I  V  *  N  K  A  S  I  A  Y  F  I  L  A  K  :  V  Q  R  I  K  Q  H  V  E  E  H  N  P  R  R  V  N  I  H  C  T  L  H  S  I  G  L  S  F  F  A  F  P  Q  I  V  G  S  I  *  V  E  E  K  R  A  F  T  V  A  V  V  N  M  L  S  F  L  L  V  W  *  T  L  F  E  *  K  *  E  F  E  L  I  R  K  R  V  K  N  V  S  E  L  S  R  K  V  I  I  Y  P  S  S  L  S  I  Y  Y  A  N  N  T  F  R  I  F  S  T  V  C  M  * </first_frame>
            <second_frame>  L  L  Y  *  Q  N  F  N  F  K  *  F  F  L  R  A  S  R  T  L  H  *  A  A  P  F  H   : G  R  D  D  Y  K  G  S  V  Q  E  I  R  K  M  E  S  S  A  S  Y  I  W  S  L  L  G  H  G  N  R  R  W  L  W  G  G  M  G  S  W  I  W  S  *  G  Y  W  L  C  W  S  W  M  W  C  W  I  Q  R  W  L  L  S  A  R  R  W  H  W  S  T  C  Q  L  H  L  H  R  S  L  Q  C :   I  H  S  C  Q  K  W  C  Y  *  D  V  S  I  N  *  Y  S  K  H  E  K  H  C  G  R  E  S  V  L  P  R  F  K  Y  C  W  L  P  R  K  S  D  S  V  F  F  K  H  K  V  Q  R  I  S  R  E  G  G  R  F  V  *  N  A  N  Q  N  V  F  S  G  S  M  H  G  S  S  K  T  R  H  Q  *  L  I  S  S  L  Q  R :   F  K  G  L  S  N  M  L  R  S  T  I  P  E  G  L  I  Y  I  A  H  F  T  A  L  A  L  V  F  L  P  S  H  R  *  *  G  A  Y  R  *  K  K  K  E  H  L  Q  L  Q  L  L  T  C  F  H  F  F  *  F  G  K  H  C  L  N  E  S  E  N  L  N  *  Y  G  K  G  S  K  M  S  L  N  Y  R  E  R  S  *  Y  T  L  R  L  C  P  S  I  M  L  I  I  L  F  G  F  L  V  L  C  V  C   </second_frame>
            <third_frame>   Y  Y  I  N  K  I  S  I  S  N  N  F  S  F  E  L  R  E  H  Y  T  E  Q  H  P  F  M  :  V  E  M  I  I  K  G  L  F  R  R  Y  E  R  W  N  P  V  H  P  T  Y  G  A  F  W  G  M  G  I  G  V  G  C  G  V  G  W  G  P  G  F  G  P  E  A  I  G  Y  V  G  A  G  C  G  V  G  F  S  V  G  F  S  L  L  G  V  G  I  G  L  P  A  N  Y  I  Y  T  G  P  Y  N   : A  F  T  A  A  R  S  G  A  I  E  M  S  R  S  T  D  I  R  S  M  R  N  I  V  E  E  S  R  C  Y  L  D  S  N  I  A  G  F  Q  E  R  V  I  Q  S  F  S  S  I  R  F  K  E  S  V  G  K  A  V  D  S  S  E  M  P  I  K  M  S  F  P  D  Q  C  M  D  R  L  K  Q  G  I  N  S  L  F  H  P  C  K   : G  S  K  D  *  A  T  C  *  G  A  Q  S  Q  K  G  *  Y  T  L  H  T  S  Q  H  W  P  *  F  F  C  L  P  T  D  S  R  E  H  I  G  R  R  K  K  S  I  Y  S  C  S  C  *  H  A  F  I  S  F  S  L  V  N  I  V  *  M  K  V  R  I  *  I  N  T  E  K  G  Q  K  C  L  *  T  I  A  K  G  H  N  I  P  F  V  F  V  H  L  L  C  *  *  Y  F  S  D  F  *  Y  C  V  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88133" stop="88053"/>
                    <exon start="86540" stop="86294"/>
                    <exon start="86136" stop="85864"/>
                    <exon start="84914" stop="84901"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYINKISISNNFSFELREHYTEQHPFMVEMIIKGLFRRYERWNPVHPTYGAFWGMGIGVGCGVGWGPGFGPEAIGYVGAGCGVGFSVGFSLLGVGIGLPANYIYTGPYNAFTAARSGAIEMSRSTDIRSMRNIVEESRCYLDSNIAGFQERVIQSFSSIRFKESVGKAVDSSEMPIKMSFPDQCMDRLKQGINSLFHPCKGSKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="88742" PGL_stop="89517"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88742" e_stop="89517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="88742" e_stop="89517" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88742" stop="89267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88742" stop="89267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88743" stop="89184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88745" stop="89476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88754" stop="89468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88783" stop="89507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88864" stop="89517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCACCAACCAATTAAAACAATGTGAAGAGAAGTTGTAAAGCAAATCTAGTGAAGAAGTTCAAAAAAAAATAAAAAAAAAATAATGGAAACATGTTCATTTCCAAGAATTGTATTATCTCCTTTAAATCCACTAATATCAAAAAACAAACACTTTCAAATTCCCAAATCCAAACAATCACATATAAAAATCACACCTCTTTTTGCAACACTCAATTCTCCAAAAGGTTTTGGACCTTCCCCTAAGAAAATTACCAAAAAATCCAAGAAAATACCAAAACAAGAAAATGAAGATCAATACGACGATAACGATGATAATGATGATGATGATGAACAAGAAAGAGGAGTTATACCAGAGATAGTAACTAATAGAATGATAAGTAGAATGGGATTTTCAGTTGGTATTCCTTTGTTTATTGGTTTATTGTTTTTTCCTTTTTTTTATTATCTTAAGGTTGGTTTAAAAATTGATGTACCTACTTGGGTACCTTTTATTGTGTCATTTGTGTTTTTTGGGAGTGCCTTATTGGGAGTTAGTTATGGGATAGTTTCATCTAGTTGGGATCCAATGAGAGAAGGGTCAACTTTGGGTTGGAATGAAGCTAAGAAGAATTGGCCTGTTTTTTGGCAATCAATTAGTGGAGGTGGATCAAGAAAAAAGTATTAGGAGTTTTTTGGACTTTGCTTATGTATCTTTTATGAATATAATAATGTGTTTAAATCTTGATCTTGTTATAAAATAACAATGTCATTTGGATTGTTTATTTGTGATTTAGG</gDNA_template>
            <first_frame> H  H  Q  P  I  K  T  M  *  R  E  V  V  K  Q  I  *  *  R  S  S  K  K  N  K  K  K  I  M  E  T  C  S  F  P  R  I  V  L  S  P  L  N  P  L  I  S  K  N  K  H  F  Q  I  P  K  S  K  Q  S  H  I  K  I  T  P  L  F  A  T  L  N  S  P  K  G  F  G  P  S  P  K  K  I  T  K  K  S  K  K  I  P  K  Q  E  N  E  D  Q  Y  D  D  N  D  D  N  D  D  D  D  E  Q  E  R  G  V  I  P  E  I  V  T  N  R  M  I  S  R  M  G  F  S  V  G  I  P  L  F  I  G  L  L  F  F  P  F  F  Y  Y  L  K  V  G  L  K  I  D  V  P  T  W  V  P  F  I  V  S  F  V  F  F  G  S  A  L  L  G  V  S  Y  G  I  V  S  S  S  W  D  P  M  R  E  G  S  T  L  G  W  N  E  A  K  K  N  W  P  V  F  W  Q  S  I  S  G  G  G  S  R  K  K  Y  *  E  F  F  G  L  C  L  C  I  F  Y  E  Y  N  N  V  F  K  S  *  S  C  Y  K  I  T  M  S  F  G  L  F  I  C  D  L   </first_frame>
            <second_frame>  T  T  N  Q  L  K  Q  C  E  E  K  L  *  S  K  S  S  E  E  V  Q  K  K  I  K  K  K  *  W  K  H  V  H  F  Q  E  L  Y  Y  L  L  *  I  H  *  Y  Q  K  T  N  T  F  K  F  P  N  P  N  N  H  I  *  K  S  H  L  F  L  Q  H  S  I  L  Q  K  V  L  D  L  P  L  R  K  L  P  K  N  P  R  K  Y  Q  N  K  K  M  K  I  N  T  T  I  T  M  I  M  M  M  M  M  N  K  K  E  E  L  Y  Q  R  *  *  L  I  E  *  *  V  E  W  D  F  Q  L  V  F  L  C  L  L  V  Y  C  F  F  L  F  F  I  I  L  R  L  V  *  K  L  M  Y  L  L  G  Y  L  L  L  C  H  L  C  F  L  G  V  P  Y  W  E  L  V  M  G  *  F  H  L  V  G  I  Q  *  E  K  G  Q  L  W  V  G  M  K  L  R  R  I  G  L  F  F  G  N  Q  L  V  E  V  D  Q  E  K  S  I  R  S  F  L  D  F  A  Y  V  S  F  M  N  I  I  M  C  L  N  L  D  L  V  I  K  *  Q  C  H  L  D  C  L  F  V  I  *  </second_frame>
            <third_frame>   P  P  T  N  *  N  N  V  K  R  S  C  K  A  N  L  V  K  K  F  K  K  K  *  K  K  N  N  G  N  M  F  I  S  K  N  C  I  I  S  F  K  S  T  N  I  K  K  Q  T  L  S  N  S  Q  I  Q  T  I  T  Y  K  N  H  T  S  F  C  N  T  Q  F  S  K  R  F  W  T  F  P  *  E  N  Y  Q  K  I  Q  E  N  T  K  T  R  K  *  R  S  I  R  R  *  R  *  *  *  *  *  *  *  T  R  K  R  S  Y  T  R  D  S  N  *  *  N  D  K  *  N  G  I  F  S  W  Y  S  F  V  Y  W  F  I  V  F  S  F  F  L  L  S  *  G  W  F  K  N  *  C  T  Y  L  G  T  F  Y  C  V  I  C  V  F  W  E  C  L  I  G  S  *  L  W  D  S  F  I  *  L  G  S  N  E  R  R  V  N  F  G  L  E  *  S  *  E  E  L  A  C  F  L  A  I  N  *  W  R  W  I  K  K  K  V  L  G  V  F  W  T  L  L  M  Y  L  L  *  I  *  *  C  V  *  I  L  I  L  L  *  N  N  N  V  I  W  I  V  Y  L  *  F  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88796" stop="89407"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKKNKKKIMETCSFPRIVLSPLNPLISKNKHFQIPKSKQSHIKITPLFATLNSPKGFGPSPKKITKKSKKIPKQENEDQYDDNDDNDDDDEQERGVIPEIVTNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFVFFGSALLGVSYGIVSSSWDPMREGSTLGWNEAKKNWPVFWQSISGGGSRKKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="104813" PGL_stop="95209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104792" e_stop="104651"/>
            <exon e_start="104573" e_stop="104476"/>
            <exon e_start="103619" e_stop="103587"/>
            <exon e_start="101920" e_stop="101691"/>
            <exon e_start="101626" e_stop="101611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.582" e_score="1.000"/>
          <exon-only e_score="0.562"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104792" e_stop="104651" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104573" e_stop="104476" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103619" e_stop="103587" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101920" e_stop="101691" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.582">
            <gDNA_intron_boundary i_start="101690" i_stop="101627" i_length="64"/>
          </intron>
          <exon e_serial="5" e_score="0.562">
            <gDNA_exon_boundary e_start="101626" e_stop="101611" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104792" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104789" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104788" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104765" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
              <exon start="101626" stop="101611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104762" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104742" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104742" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104667" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
              <exon start="101626" stop="101611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104543" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA : AAGTAGGAAACTGAAA</gDNA_template>
            <first_frame> H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L  S  T  L  *  Y  R  I  W  L  N  I  K  R  N  E  *  C  P  F  I  H  G  A  N  K  Y  I  V  D  F  I  * :   S  R  K  L  K </first_frame>
            <second_frame>  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  W :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  R  R  C  N  I  E  Y  G  *  I  S  N  E  M  N  N  V  L  L  S  M  E  L  I  N  I  L  W  I  L  Y   : K  V  G  N  *   </second_frame>
            <third_frame>   *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : G  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F  D  V  V  I  S  N  M  V  E  Y  Q  T  K  *  I  M  S  F  Y  P  W  S  *  *  I  Y  C  G  F  Y  I  :  K  *  E  T  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104781" stop="104651"/>
                    <exon start="104573" stop="104476"/>
                    <exon start="103619" stop="103587"/>
                    <exon start="101920" stop="101841"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAQWMPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="104809" e_stop="104651"/>
            <exon e_start="104573" e_stop="104476"/>
            <exon e_start="103619" e_stop="103587"/>
            <exon e_start="101920" e_stop="101691"/>
            <exon e_start="98536" e_stop="98501"/>
            <exon e_start="97681" e_stop="97651"/>
            <exon e_start="95295" e_stop="95211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.075" e_score="0.778"/>
          <exon-intron don_prob="0.506" acc_prob="0.000" e_score="0.548"/>
          <exon-only e_score="0.494"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104809" e_stop="104651" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104573" e_stop="104476" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103619" e_stop="103587" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101920" e_stop="101691" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101690" i_stop="98537" i_length="3154"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="98536" e_stop="98501" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.534" acc_prob="0.075">
            <gDNA_intron_boundary i_start="98500" i_stop="97682" i_length="819"/>
          </intron>
          <exon e_serial="6" e_score="0.548">
            <gDNA_exon_boundary e_start="97681" e_stop="97651" e_length="31"/>
          </exon>
          <intron i_serial="6" don_prob="0.506" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97650" i_stop="95296" i_length="2355"/>
          </intron>
          <exon e_serial="7" e_score="0.494">
            <gDNA_exon_boundary e_start="95295" e_stop="95211" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104809" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
              <exon start="98536" stop="98501"/>
              <exon start="97681" stop="97651"/>
              <exon start="95295" stop="95211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104792" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104789" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104788" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104762" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104742" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104742" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104543" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA : AAATGAAAAAATAAAAAAAGTTAAAAAACAAGAAAA : AAATAGAGAAAACAAATTGAATAAGTGACAC : CAACAATTTGCTTTTGCTCTATTCTATTGACATATTCAAAAAAACGAGAAAATGCAGGGGAAAATCCTTAATCAACGGTTCCAAT</gDNA_template>
            <first_frame> C  L  F  S  T  P  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  W :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  R  R  C  N  I  E  Y  G  *  I  S  N  E  M  N  N  V  L  L  S  M  E  L  I  N  I  L  W  I  L  Y   : K  M  K  K  *  K  K  L  K  N  K  K   : K  I  E  K  T  N  *  I  S  D  T :   N  N  L  L  L  L  Y  S  I  D  I  F  K  K  T  R  K  C  R  G  K  S  L  I  N  G  S  N </first_frame>
            <second_frame>  A  Y  F  L  R  P  *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : G  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F  D  V  V  I  S  N  M  V  E  Y  Q  T  K  *  I  M  S  F  Y  P  W  S  *  *  I  Y  C  G  F  Y  I  :  K  *  K  N  K  K  S  *  K  T  R  K  :  K  *  R  K  Q  I  E  *  V  T   : P  T  I  C  F  C  S  I  L  L  T  Y  S  K  K  R  E  N  A  G  E  N  P  *  S  T  V  P   </second_frame>
            <third_frame>   L  I  F  Y  A  H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L  S  T  L  *  Y  R  I  W  L  N  I  K  R  N  E  *  C  P  F  I  H  G  A  N  K  Y  I  V  D  F  I  * :   N  E  K  I  K  K  V  K  K  Q  E  K :   N  R  E  N  K  L  N  K  *  H  :  Q  Q  F  A  F  A  L  F  Y  *  H  I  Q  K  N  E  K  M  Q  G  K  I  L  N  Q  R  F  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104781" stop="104651"/>
                    <exon start="104573" stop="104476"/>
                    <exon start="103619" stop="103587"/>
                    <exon start="101920" stop="101841"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAQWMPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="104809" e_stop="104651"/>
            <exon e_start="104573" e_stop="104476"/>
            <exon e_start="103619" e_stop="103587"/>
            <exon e_start="101920" e_stop="101691"/>
            <exon e_start="100735" e_stop="100727"/>
            <exon e_start="98532" e_stop="98501"/>
            <exon e_start="97681" e_stop="97651"/>
            <exon e_start="96571" e_stop="96524"/>
            <exon e_start="95238" e_stop="95209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.778"/>
          <exon-intron don_prob="0.534" acc_prob="0.075" e_score="0.781"/>
          <exon-intron don_prob="0.506" acc_prob="0.000" e_score="0.548"/>
          <exon-intron don_prob="0.341" acc_prob="0.536" e_score="0.583"/>
          <exon-only e_score="0.567"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104809" e_stop="104651" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104573" e_stop="104476" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103619" e_stop="103587" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103586" i_stop="101921" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101920" e_stop="101691" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.831">
            <gDNA_intron_boundary i_start="101690" i_stop="100736" i_length="955"/>
          </intron>
          <exon e_serial="5" e_score="0.778">
            <gDNA_exon_boundary e_start="100735" e_stop="100727" e_length="9"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100726" i_stop="98533" i_length="2194"/>
          </intron>
          <exon e_serial="6" e_score="0.781">
            <gDNA_exon_boundary e_start="98532" e_stop="98501" e_length="32"/>
          </exon>
          <intron i_serial="6" don_prob="0.534" acc_prob="0.075">
            <gDNA_intron_boundary i_start="98500" i_stop="97682" i_length="819"/>
          </intron>
          <exon e_serial="7" e_score="0.548">
            <gDNA_exon_boundary e_start="97681" e_stop="97651" e_length="31"/>
          </exon>
          <intron i_serial="7" don_prob="0.506" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97650" i_stop="96572" i_length="1079"/>
          </intron>
          <exon e_serial="8" e_score="0.583">
            <gDNA_exon_boundary e_start="96571" e_stop="96524" e_length="48"/>
          </exon>
          <intron i_serial="8" don_prob="0.341" acc_prob="0.536">
            <gDNA_intron_boundary i_start="96523" i_stop="95239" i_length="1285"/>
          </intron>
          <exon e_serial="9" e_score="0.567">
            <gDNA_exon_boundary e_start="95238" e_stop="95209" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104809" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
              <exon start="100735" stop="100727"/>
              <exon start="98532" stop="98501"/>
              <exon start="97681" stop="97651"/>
              <exon start="96571" stop="96524"/>
              <exon start="95238" stop="95209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104792" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104789" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104788" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104762" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104742" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104742" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104543" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="101920" stop="101691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTCGACGTTGTAATATCGAATATGGTTGAATATCAAACGAAATGAATAATGTCCTTTTATCCATGGAGCTAATAAATATATTGTGGATTTTATATA : ACAAAGAAA : GAAAAAATAAAAAAAGTTAAAAAACAAGAAAA : AAATAGAGAAAACAAATTGAATAAGTGACAC : CTACTACTCTTGACAGAGTGACCCAAAATAGAGCTGTGGTTTAAAGTG : GGGAAAATCCTTAATCAACGGTTCCAATAT</gDNA_template>
            <first_frame> C  L  F  S  T  P  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  W :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  R  R  C  N  I  E  Y  G  *  I  S  N  E  M  N  N  V  L  L  S  M  E  L  I  N  I  L  W  I  L  Y   : N  K  E   : R  K  N  K  K  S  *  K  T  R  K  :  K  *  R  K  Q  I  E  *  V  T   : P  T  T  L  D  R  V  T  Q  N  R  A  V  V  *  S   : G  E  N  P  *  S  T  V  P  I  </first_frame>
            <second_frame>  A  Y  F  L  R  P  *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : G  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F  D  V  V  I  S  N  M  V  E  Y  Q  T  K  *  I  M  S  F  Y  P  W  S  *  *  I  Y  C  G  F  Y  I  :  T  K  K  :  E  K  I  K  K  V  K  K  Q  E  K :   N  R  E  N  K  L  N  K  *  H  :  L  L  L  L  T  E  *  P  K  I  E  L  W  F  K  V  :  G  K  I  L  N  Q  R  F  Q  Y </second_frame>
            <third_frame>   L  I  F  Y  A  H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L  S  T  L  *  Y  R  I  W  L  N  I  K  R  N  E  *  C  P  F  I  H  G  A  N  K  Y  I  V  D  F  I  * :   Q  R  K :   K  K  *  K  K  L  K  N  K  K   : K  I  E  K  T  N  *  I  S  D  T :   Y  Y  S  *  Q  S  D  P  K  *  S  C  G  L  K  W :   G  K  S  L  I  N  G  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104781" stop="104651"/>
                    <exon start="104573" stop="104476"/>
                    <exon start="103619" stop="103587"/>
                    <exon start="101920" stop="101841"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAQWMPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="104813" e_stop="104651"/>
            <exon e_start="104573" e_stop="104476"/>
            <exon e_start="103619" e_stop="103587"/>
            <exon e_start="102721" e_stop="102677"/>
            <exon e_start="102178" e_stop="102008"/>
            <exon e_start="101920" e_stop="101784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.945"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.644"/>
          <exon-intron don_prob="0.406" acc_prob="0.999" e_score="0.842"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="104813" e_stop="104651" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104650" i_stop="104574" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="104573" e_stop="104476" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104475" i_stop="103620" i_length="856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103619" e_stop="103587" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103586" i_stop="102722" i_length="865"/>
          </intron>
          <exon e_serial="4" e_score="0.644">
            <gDNA_exon_boundary e_start="102721" e_stop="102677" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102676" i_stop="102179" i_length="498"/>
          </intron>
          <exon e_serial="5" e_score="0.842">
            <gDNA_exon_boundary e_start="102178" e_stop="102008" e_length="171"/>
          </exon>
          <intron i_serial="5" don_prob="0.406" acc_prob="0.999">
            <gDNA_intron_boundary i_start="102007" i_stop="101921" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="0.905">
            <gDNA_exon_boundary e_start="101920" e_stop="101784" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104813" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="102721" stop="102677"/>
              <exon start="102178" stop="102008"/>
              <exon start="101920" stop="101784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104813" stop="104651"/>
              <exon start="104573" stop="104476"/>
              <exon start="103619" stop="103587"/>
              <exon start="102721" stop="102677"/>
              <exon start="102178" stop="102008"/>
              <exon start="101920" stop="101916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTGCTTATTTTCTACGCCCATAAATCTAATCCCGTAACGCTTTTCTCCGTCGCAACTCCGATAGAAAAAAAATGGCGACCGGCGGCGGTGCTACTGGTGGTGGAGGAAAAGTTTCGTTCAAAGTCACTCTCACTTCCGATCCTAAATTGCCTTTCAAAGT : TTTTAGCGTTCCGGAAGCTGCTCCGTTCACCGCTGTGCTGAAATTTGCTGCTGAGGAATTCAAAGTACCTCCACAAACTAGCGCCATTATCACTAATG : ATGGAGTGGGTATTAATCCTCAACAAAGTGCTG : TAATCTGACAGTCTCAAGTTTTGAAAATCTTTTCAGAACGTCTGA : TACGAGTTCAATTGACTATCGCTCGACATAAACTTAACTTCTAACATGCCTAGTTACCAAGTAATTTGCTTCAAGAAGGACGATGTATACTTATGTTCTCGGACCAAAGTTCTCATTTGCTTACCGATGCAATGCATATCACCTATAGTTACAATTGCATGTACTTTTGAA : GTAATGTTTTTCTTAAACATGGCTCTGAACTGCGTCTAATTCCGCGCGACAGGGTTGGTGCTCAATGGATGCCATACTGAGCAATCTTTACCCATGTATTTAACCTATACTTCTTTCTCCTCTTGAGTGCAACTTTC</gDNA_template>
            <first_frame> L  L  L  I  F  Y  A  H  K  S  N  P  V  T  L  F  S  V  A  T  P  I  E  K  K  W  R  P  A  A  V  L  L  V  V  E  E  K  F  R  S  K  S  L  S  L  P  I  L  N  C  L  S  K   : F  L  A  F  R  K  L  L  R  S  P  L  C  *  N  L  L  L  R  N  S  K  Y  L  H  K  L  A  P  L  S  L  M  :  M  E  W  V  L  I  L  N  K  V  L  :  *  S  D  S  L  K  F  *  K  S  F  Q  N  V  *  :  Y  E  F  N  *  L  S  L  D  I  N  L  T  S  N  M  P  S  Y  Q  V  I  C  F  K  K  D  D  V  Y  L  C  S  R  T  K  V  L  I  C  L  P  M  Q  C  I  S  P  I  V  T  I  A  C  T  F  E  :  V  M  F  F  L  N  M  A  L  N  C  V  *  F  R  A  T  G  L  V  L  N  G  C  H  T  E  Q  S  L  P  M  Y  L  T  Y  T  S  F  S  S  *  V  Q  L   </first_frame>
            <second_frame>  F  C  L  F  S  T  P  I  N  L  I  P  *  R  F  S  P  S  Q  L  R  *  K  K  N  G  D  R  R  R  C  Y  W  W  W  R  K  S  F  V  Q  S  H  S  H  F  R  S  *  I  A  F  Q  S  :  F  *  R  S  G  S  C  S  V  H  R  C  A  E  I  C  C  *  G  I  Q  S  T  S  T  N  *  R  H  Y  H  *  * :   W  S  G  Y  *  S  S  T  K  C  C :   N  L  T  V  S  S  F  E  N  L  F  R  T  S  D :   T  S  S  I  D  Y  R  S  T  *  T  *  L  L  T  C  L  V  T  K  *  F  A  S  R  R  T  M  Y  T  Y  V  L  G  P  K  F  S  F  A  Y  R  C  N  A  Y  H  L  *  L  Q  L  H  V  L  L  K :   *  C  F  S  *  T  W  L  *  T  A  S  N  S  A  R  Q  G  W  C  S  M  D  A  I  L  S  N  L  Y  P  C  I  *  P  I  L  L  S  P  L  E  C  N  F  </second_frame>
            <third_frame>   F  A  Y  F  L  R  P  *  I  *  S  R  N  A  F  L  R  R  N  S  D  R  K  K  M  A  T  G  G  G  A  T  G  G  G  G  K  V  S  F  K  V  T  L  T  S  D  P  K  L  P  F  K  V :   F  S  V  P  E  A  A  P  F  T  A  V  L  K  F  A  A  E  E  F  K  V  P  P  Q  T  S  A  I  I  T  N   : D  G  V  G  I  N  P  Q  Q  S  A   : V  I  *  Q  S  Q  V  L  K  I  F  S  E  R  L   : I  R  V  Q  L  T  I  A  R  H  K  L  N  F  *  H  A  *  L  P  S  N  L  L  Q  E  G  R  C  I  L  M  F  S  D  Q  S  S  H  L  L  T  D  A  M  H  I  T  Y  S  Y  N  C  M  Y  F  *   : S  N  V  F  L  K  H  G  S  E  L  R  L  I  P  R  D  R  V  G  A  Q  W  M  P  Y  *  A  I  F  T  H  V  F  N  L  Y  F  F  L  L  L  S  A  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104781" stop="104651"/>
                    <exon start="104573" stop="104476"/>
                    <exon start="103619" stop="103587"/>
                    <exon start="102721" stop="102714"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNAFLRRNSDRKKMATGGGATGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104813" stop="104651"/>
                    <exon start="104573" stop="104533"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLIFYAHKSNPVTLFSVATPIEKKWRPAAVLLVVEEKFRSKSLSLPILNCLSKFLAFRKLLRSPLC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102163" stop="102008"/>
                    <exon start="101920" stop="101882"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLDINLTSNMPSYQVICFKKDDVYLCSRTKVLICLPMQCISPIVTIACTFEVMFFLNMALNCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="100199" PGL_stop="101002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100199" e_stop="100478"/>
            <exon e_start="100590" e_stop="100719"/>
            <exon e_start="100798" e_stop="101002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.801" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="100199" e_stop="100478" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="100479" i_stop="100589" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100590" e_stop="100719" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.801">
            <gDNA_intron_boundary i_start="100720" i_stop="100797" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="100798" e_stop="101002" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100199" stop="100478"/>
              <exon start="100590" stop="100719"/>
              <exon start="100798" stop="101002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGGGCATGGACCATATCCATATCCAGATTTTGATGCAATCTCTAAGGGAGTTTTATATAATTACCAAACAGGAAGTTCAAATTCTACTCCAGCTTGGGATTTTACAAGTACTGGTCATTTCCAAACACCAACTAGAACTGATCCTAGATTAAGTGATGTGATGTTGGAAGATGAAGAGGAGGCTAAAGAGTGGACAGCACAAGTGGAGCCTGGAATTCAGATTACTTTTGATTCTCTTCCTCATGGTGGAAATGATCTTAAAAGAATCAGATTTAG : TCGGGACGTGTTCAACAAATGGCAAGCTCAAAGATGGTGGGGTGAAAATTATGACAGAATTATGGAGCTTTACAATGTTCAGAGATTTAATAAGTATGCTCTTCACACACCCTCACAGTCTGAGGATGGG : AGAGATTCAAATTATTCGTCAAGGCCGGGATCTGCAAGGGATTTCCAACAATACAATGCTGGATTAGGTGCTCATGTCCCTAGTTTCCCAAAGGGCAGTGGGGTATCAAGAACGACAACCTCCTCTAGAGACGAAGCTTCAGTTTCTGTAAGTAATGCTAGTGATATGGAGTCAGAATGGATAGAACAAGATGAACCTGGAGTGT</gDNA_template>
            <first_frame> R  K  G  M  D  H  I  H  I  Q  I  L  M  Q  S  L  R  E  F  Y  I  I  T  K  Q  E  V  Q  I  L  L  Q  L  G  I  L  Q  V  L  V  I  S  K  H  Q  L  E  L  I  L  D  *  V  M  *  C  W  K  M  K  R  R  L  K  S  G  Q  H  K  W  S  L  E  F  R  L  L  L  I  L  F  L  M  V  E  M  I  L  K  E  S  D  L   : V  G  T  C  S  T  N  G  K  L  K  D  G  G  V  K  I  M  T  E  L  W  S  F  T  M  F  R  D  L  I  S  M  L  F  T  H  P  H  S  L  R  M  G :   E  I  Q  I  I  R  Q  G  R  D  L  Q  G  I  S  N  N  T  M  L  D  *  V  L  M  S  L  V  S  Q  R  A  V  G  Y  Q  E  R  Q  P  P  L  E  T  K  L  Q  F  L  *  V  M  L  V  I  W  S  Q  N  G  *  N  K  M  N  L  E  C </first_frame>
            <second_frame>  E  R  A  W  T  I  S  I  S  R  F  *  C  N  L  *  G  S  F  I  *  L  P  N  R  K  F  K  F  Y  S  S  L  G  F  Y  K  Y  W  S  F  P  N  T  N  *  N  *  S  *  I  K  *  C  D  V  G  R  *  R  G  G  *  R  V  D  S  T  S  G  A  W  N  S  D  Y  F  *  F  S  S  S  W  W  K  *  S  *  K  N  Q  I  *  :  S  G  R  V  Q  Q  M  A  S  S  K  M  V  G  *  K  L  *  Q  N  Y  G  A  L  Q  C  S  E  I  *  *  V  C  S  S  H  T  L  T  V  *  G  W   : E  R  F  K  L  F  V  K  A  G  I  C  K  G  F  P  T  I  Q  C  W  I  R  C  S  C  P  *  F  P  K  G  Q  W  G  I  K  N  D  N  L  L  *  R  R  S  F  S  F  C  K  *  C  *  *  Y  G  V  R  M  D  R  T  R  *  T  W  S   </second_frame>
            <third_frame>   K  G  H  G  P  Y  P  Y  P  D  F  D  A  I  S  K  G  V  L  Y  N  Y  Q  T  G  S  S  N  S  T  P  A  W  D  F  T  S  T  G  H  F  Q  T  P  T  R  T  D  P  R  L  S  D  V  M  L  E  D  E  E  E  A  K  E  W  T  A  Q  V  E  P  G  I  Q  I  T  F  D  S  L  P  H  G  G  N  D  L  K  R  I  R  F  S :   R  D  V  F  N  K  W  Q  A  Q  R  W  W  G  E  N  Y  D  R  I  M  E  L  Y  N  V  Q  R  F  N  K  Y  A  L  H  T  P  S  Q  S  E  D  G  :  R  D  S  N  Y  S  S  R  P  G  S  A  R  D  F  Q  Q  Y  N  A  G  L  G  A  H  V  P  S  F  P  K  G  S  G  V  S  R  T  T  T  S  S  R  D  E  A  S  V  S  V  S  N  A  S  D  M  E  S  E  W  I  E  Q  D  E  P  G  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100201" stop="100478"/>
                    <exon start="100590" stop="100719"/>
                    <exon start="100798" stop="101001"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGHGPYPYPDFDAISKGVLYNYQTGSSNSTPAWDFTSTGHFQTPTRTDPRLSDVMLEDEEEAKEWTAQVEPGIQITFDSLPHGGNDLKRIRFSRDVFNKWQAQRWWGENYDRIMELYNVQRFNKYALHTPSQSEDGRDSNYSSRPGSARDFQQYNAGLGAHVPSFPKGSGVSRTTTSSRDEASVSVSNASDMESEWIEQDEPGV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="106262" PGL_stop="107520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106262" e_stop="107520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106262" e_stop="107520" e_length="1259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106262" stop="107098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106322" stop="106884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106693" stop="107520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738491" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTCCTTCTATAAATTCTCCTCTTCGTTCTTCTCCAAATATCATCTAGGGTTAGCTCCCAATTCTCCAGTCGCCATCGATTCAGTGGCCGCCATTGATACCATACCGCCGGTATTGTATAATTTGCTTAGTTTTAGTTTTCATATAGTAACTGTATTCTGTTTACTTTGCACTTCGCAATCATATAAGCTTCGCTAAATTCTCAAGTTAGTGCAGTCTTACAGCGTTAGTGCGTATAGGAAAAGCTGAATTTATCAGCGGCGGCCAGACAACCGTTGAGATGAATCCACAGATGGGTTTCGTTTTTGCTCCTGTCTACTAATTTCTTCTCACATTTTGCTGTTATTATATCTGTAGTTTTTTCAATTTGATGGTACAATTTGGAAATTGGGGCGAGTTATCAGTACTCGTATAACCCAAAGTATCTATATCATCAAGCTGTCTTTGTTGATGTAGCATTTGATTTTTTCTGTTTTCCTTCGGGAAGATGGGAGGATTCTATGTTGTAATCCGAAGATGGAGATCTCATATCCTATAGCCTTGTAGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGAAATACATTCAATTCAACTTAATTTTCATATCTTCATGCCTGTGATGAAATCTATTATAAAGAACACCATCTTTCGGGACTGAATGGCCCTTAAGGCCTTGTTGTCAATTCTGCAATTCTGAGGCTTTTATATGTTATAGTTTTGCTTTGCTTGAACTATGTGTAAACTGCTTTGTGATTTGAGATGGAAGTGATGAATATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTCATGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCTCCAATTTTCTTCCATTTTTTCTCTTAAATCTTCAAAAAAATTGATTATTCAGTGTTTATTATGATTTTTCTGATTGATTTGAATATGGATTTGATGAATATTTCCCCAGATGATCGAAGCTGAAATAACTGAGCGCTTTATAATGCATTTTCTCCTCTTTAGGGGAAAATCCAAGCCAGATATTCTGATCCATATGTATTAATTTCAATTGTTTTCTATGTTTTGATTGTTCATTTGTTAGTTGAATTTGTTGTATGGAGTTGATGATTATTTCCCCAGATGATCGAAGCTGAAATTACTGAGCGCTTTTTCATGTATTTTCTCCGTTCAGGGGAAAATTCAAGCCAGATATTCTGATCCATATACTTACAATATGATT</gDNA_template>
            <first_frame> I  S  F  Y  K  F  S  S  S  F  F  S  K  Y  H  L  G  L  A  P  N  S  P  V  A  I  D  S  V  A  A  I  D  T  I  P  P  V  L  Y  N  L  L  S  F  S  F  H  I  V  T  V  F  C  L  L  C  T  S  Q  S  Y  K  L  R  *  I  L  K  L  V  Q  S  Y  S  V  S  A  Y  R  K  S  *  I  Y  Q  R  R  P  D  N  R  *  D  E  S  T  D  G  F  R  F  C  S  C  L  L  I  S  S  H  I  L  L  L  L  Y  L  *  F  F  Q  F  D  G  T  I  W  K  L  G  R  V  I  S  T  R  I  T  Q  S  I  Y  I  I  K  L  S  L  L  M  *  H  L  I  F  S  V  F  L  R  E  D  G  R  I  L  C  C  N  P  K  M  E  I  S  Y  P  I  A  L  *  S  G  I  S  A  I  T  I  W  D  *  P  *  E  I  H  S  I  Q  L  N  F  H  I  F  M  P  V  M  K  S  I  I  K  N  T  I  F  R  D  *  M  A  L  K  A  L  L  S  I  L  Q  F  *  G  F  Y  M  L  *  F  C  F  A  *  T  M  C  K  L  L  C  D  L  R  W  K  *  *  I  F  P  Q  M  I  E  A  E  I  T  E  R  F  S  C  I  F  S  L  L  G  E  N  P  S  Q  I  F  *  S  I  S  N  F  L  P  F  F  L  L  N  L  Q  K  N  *  L  F  S  V  Y  Y  D  F  S  D  *  F  E  Y  G  F  D  E  Y  F  P  R  *  S  K  L  K  *  L  S  A  L  *  C  I  F  S  S  L  G  E  N  P  S  Q  I  F  *  S  I  C  I  N  F  N  C  F  L  C  F  D  C  S  F  V  S  *  I  C  C  M  E  L  M  I  I  S  P  D  D  R  S  *  N  Y  *  A  L  F  H  V  F  S  P  F  R  G  K  F  K  P  D  I  L  I  H  I  L  T  I  *   </first_frame>
            <second_frame>  S  P  S  I  N  S  P  L  R  S  S  P  N  I  I  *  G  *  L  P  I  L  Q  S  P  S  I  Q  W  P  P  L  I  P  Y  R  R  Y  C  I  I  C  L  V  L  V  F  I  *  *  L  Y  S  V  Y  F  A  L  R  N  H  I  S  F  A  K  F  S  S  *  C  S  L  T  A  L  V  R  I  G  K  A  E  F  I  S  G  G  Q  T  T  V  E  M  N  P  Q  M  G  F  V  F  A  P  V  Y  *  F  L  L  T  F  C  C  Y  Y  I  C  S  F  F  N  L  M  V  Q  F  G  N  W  G  E  L  S  V  L  V  *  P  K  V  S  I  S  S  S  C  L  C  *  C  S  I  *  F  F  L  F  S  F  G  K  M  G  G  F  Y  V  V  I  R  R  W  R  S  H  I  L  *  P  C  R  A  E  S  L  L  L  L  F  G  I  D  H  E  K  Y  I  Q  F  N  L  I  F  I  S  S  C  L  *  *  N  L  L  *  R  T  P  S  F  G  T  E  W  P  L  R  P  C  C  Q  F  C  N  S  E  A  F  I  C  Y  S  F  A  L  L  E  L  C  V  N  C  F  V  I  *  D  G  S  D  E  Y  F  P  R  *  S  K  L  K  L  L  S  A  F  H  V  F  S  P  Y  *  E  K  I  Q  A  R  Y  S  D  P  S  P  I  F  F  H  F  F  S  *  I  F  K  K  I  D  Y  S  V  F  I  M  I  F  L  I  D  L  N  M  D  L  M  N  I  S  P  D  D  R  S  *  N  N  *  A  L  Y  N  A  F  S  P  L  *  G  K  I  Q  A  R  Y  S  D  P  Y  V  L  I  S  I  V  F  Y  V  L  I  V  H  L  L  V  E  F  V  V  W  S  *  *  L  F  P  Q  M  I  E  A  E  I  T  E  R  F  F  M  Y  F  L  R  S  G  E  N  S  S  Q  I  F  *  S  I  Y  L  Q  Y  D  </second_frame>
            <third_frame>   L  L  L  *  I  L  L  F  V  L  L  Q  I  S  S  R  V  S  S  Q  F  S  S  R  H  R  F  S  G  R  H  *  Y  H  T  A  G  I  V  *  F  A  *  F  *  F  S  Y  S  N  C  I  L  F  T  L  H  F  A  I  I  *  A  S  L  N  S  Q  V  S  A  V  L  Q  R  *  C  V  *  E  K  L  N  L  S  A  A  A  R  Q  P  L  R  *  I  H  R  W  V  S  F  L  L  L  S  T  N  F  F  S  H  F  A  V  I  I  S  V  V  F  S  I  *  W  Y  N  L  E  I  G  A  S  Y  Q  Y  S  Y  N  P  K  Y  L  Y  H  Q  A  V  F  V  D  V  A  F  D  F  F  C  F  P  S  G  R  W  E  D  S  M  L  *  S  E  D  G  D  L  I  S  Y  S  L  V  E  R  N  L  C  Y  Y  Y  L  G  L  T  M  R  N  T  F  N  S  T  *  F  S  Y  L  H  A  C  D  E  I  Y  Y  K  E  H  H  L  S  G  L  N  G  P  *  G  L  V  V  N  S  A  I  L  R  L  L  Y  V  I  V  L  L  C  L  N  Y  V  *  T  A  L  *  F  E  M  E  V  M  N  I  S  P  D  D  R  S  *  N  Y  *  A  L  F  M  Y  F  L  L  I  R  R  K  S  K  P  D  I  L  I  H  L  Q  F  S  S  I  F  S  L  K  S  S  K  K  L  I  I  Q  C  L  L  *  F  F  *  L  I  *  I  W  I  *  *  I  F  P  Q  M  I  E  A  E  I  T  E  R  F  I  M  H  F  L  L  F  R  G  K  S  K  P  D  I  L  I  H  M  Y  *  F  Q  L  F  S  M  F  *  L  F  I  C  *  L  N  L  L  Y  G  V  D  D  Y  F  P  R  *  S  K  L  K  L  L  S  A  F  S  C  I  F  S  V  Q  G  K  I  Q  A  R  Y  S  D  P  Y  T  Y  N  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106262" stop="106459"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISFYKFSSSFFSKYHLGLAPNSPVAIDSVAAIDTIPPVLYNLLSFSFHIVTVFCLLCTSQSYKLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="108405" PGL_stop="109840"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108405" e_stop="109840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108405" e_stop="109840" e_length="1436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108405" stop="109111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108406" stop="108581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109005" stop="109733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109072" stop="109684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109072" stop="109684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109222" stop="109444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109222" stop="109444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109223" stop="109444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109239" stop="109840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109241" stop="109684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGAGACCTGAATTTATTGATTTTGATGTCAACTACAAGCAATTCTTCTGAGGATTTTCCCCATTGTTTGAATACTGTATTCTTTTTAACTTTTTATATCGATGTACAAATGTACTTAGAAAAACTTGATCATGAGGTTTTAGAGATGTCAATAGTTGGATCTTGCTATTATTTATGGATTCAGTCATTTGAGATAAATAAATGTCACTTTTTGTTTTATACTTTGATATTTCATTTTGATGGTAAGACTATTGATATTGGGGCGAGTTTTTTGGTACTCGTATAATCCGATGTATCCATATCATCATAGAATAAGCTGTCTTTGTTGATTTAGCACTTTGTTTTTTCTGTTTTCCTTTGGGAAGATTGAAGAATCCTGTGTTGTAATCCGAAGATGGCGATCTCATATCCTATAGCCTTGTGGAGCGGAATCTCTGCTATTACTATTTGGGATTGACCATGAGATATACATTCAATTCAACTTAATTTTATATGCTTAGCTAATCTTTGATGAAATTTGATCTTTTTTTGTTTTTATGAACTATTATTGTTGAATTTTGTGTTTATGGATATGATGATTATTTCCCCAGATGATCGAAGTTGAAATTACTGAGCGCTTTTACTGTATTTTCTCCTTATTAGGAGAAAATCCAAGCCAGATATTCTGATCCATCACTTATGTTTTGCATTTATAGAGTTGAAATTTGTACATTTATGTCTTCCAGTGCTATTATTCCAATTTCTGTGTTTTTTTAAAACAATTTTTGATGAAATATATTGATAATTATGGTGTGTAAGGATGATGAAGAAATCATTCGGATTCCCACTGATGTTTTTAATGTGATTACTACAACCAGCTACTTCTGACTTCACATCATAGCACTACCTTTTCCTCTTTTATCTTTTTTTTTAACTTTTATGTATTGTTTCTTGTTGTTACTGATATTGGCTTGAAGATTGTAATTTTTGGAATTGTTTAACAATGGTTGTTTTGTACTCTACTTATGGATTTAAATCTATTTATATGAATCAATCAATTGCTCTTATCTTCATTTGAATGTAGTACAAACATATTGACCTGTTGCTACGTGATAACCATCCTTGTAAATGGAAGAACAGTCGGCGACAATGCGAAGCAATTTCAGGGAGCAGAACAAGGTGGTTGAGGGAATTGTTGAAATTTTGGAACATCAACTTTTCTTCATGTTTTCAGTTATAGTATAGACATTTTGTGAACTATGTAATACTTGTTTAAACTAAATAATATGATGTGATGCTTCACAATACAATATACATATATTTCGATGGCTATCTAATGAAGTTCAAAATTTTTTATCCTATATCAAGAAGTGCATCGTCTCATAGTTCATATGTAGAGAAAGGTCTGTTTATATCTCATTTAAATCTTCAATAATTTGGTGATGGGAGATATGG</gDNA_template>
            <first_frame> L  *  D  L  N  L  L  I  L  M  S  T  T  S  N  S  S  E  D  F  P  H  C  L  N  T  V  F  F  L  T  F  Y  I  D  V  Q  M  Y  L  E  K  L  D  H  E  V  L  E  M  S  I  V  G  S  C  Y  Y  L  W  I  Q  S  F  E  I  N  K  C  H  F  L  F  Y  T  L  I  F  H  F  D  G  K  T  I  D  I  G  A  S  F  L  V  L  V  *  S  D  V  S  I  S  S  *  N  K  L  S  L  L  I  *  H  F  V  F  S  V  F  L  W  E  D  *  R  I  L  C  C  N  P  K  M  A  I  S  Y  P  I  A  L  W  S  G  I  S  A  I  T  I  W  D  *  P  *  D  I  H  S  I  Q  L  N  F  I  C  L  A  N  L  *  *  N  L  I  F  F  C  F  Y  E  L  L  L  L  N  F  V  F  M  D  M  M  I  I  S  P  D  D  R  S  *  N  Y  *  A  L  L  L  Y  F  L  L  I  R  R  K  S  K  P  D  I  L  I  H  H  L  C  F  A  F  I  E  L  K  F  V  H  L  C  L  P  V  L  L  F  Q  F  L  C  F  F  K  T  I  F  D  E  I  Y  *  *  L  W  C  V  R  M  M  K  K  S  F  G  F  P  L  M  F  L  M  *  L  L  Q  P  A  T  S  D  F  T  S  *  H  Y  L  F  L  F  Y  L  F  F  *  L  L  C  I  V  S  C  C  Y  *  Y  W  L  E  D  C  N  F  W  N  C  L  T  M  V  V  L  Y  S  T  Y  G  F  K  S  I  Y  M  N  Q  S  I  A  L  I  F  I  *  M  *  Y  K  H  I  D  L  L  L  R  D  N  H  P  C  K  W  K  N  S  R  R  Q  C  E  A  I  S  G  S  R  T  R  W  L  R  E  L  L  K  F  W  N  I  N  F  S  S  C  F  Q  L  *  Y  R  H  F  V  N  Y  V  I  L  V  *  T  K  *  Y  D  V  M  L  H  N  T  I  Y  I  Y  F  D  G  Y  L  M  K  F  K  I  F  Y  P  I  S  R  S  A  S  S  H  S  S  Y  V  E  K  G  L  F  I  S  H  L  N  L  Q  *  F  G  D  G  R  Y   </first_frame>
            <second_frame>  F  E  T  *  I  Y  *  F  *  C  Q  L  Q  A  I  L  L  R  I  F  P  I  V  *  I  L  Y  S  F  *  L  F  I  S  M  Y  K  C  T  *  K  N  L  I  M  R  F  *  R  C  Q  *  L  D  L  A  I  I  Y  G  F  S  H  L  R  *  I  N  V  T  F  C  F  I  L  *  Y  F  I  L  M  V  R  L  L  I  L  G  R  V  F  W  Y  S  Y  N  P  M  Y  P  Y  H  H  R  I  S  C  L  C  *  F  S  T  L  F  F  L  F  S  F  G  K  I  E  E  S  C  V  V  I  R  R  W  R  S  H  I  L  *  P  C  G  A  E  S  L  L  L  L  F  G  I  D  H  E  I  Y  I  Q  F  N  L  I  L  Y  A  *  L  I  F  D  E  I  *  S  F  F  V  F  M  N  Y  Y  C  *  I  L  C  L  W  I  *  *  L  F  P  Q  M  I  E  V  E  I  T  E  R  F  Y  C  I  F  S  L  L  G  E  N  P  S  Q  I  F  *  S  I  T  Y  V  L  H  L  *  S  *  N  L  Y  I  Y  V  F  Q  C  Y  Y  S  N  F  C  V  F  L  K  Q  F  L  M  K  Y  I  D  N  Y  G  V  *  G  *  *  R  N  H  S  D  S  H  *  C  F  *  C  D  Y  Y  N  Q  L  L  L  T  S  H  H  S  T  T  F  S  S  F  I  F  F  F  N  F  Y  V  L  F  L  V  V  T  D  I  G  L  K  I  V  I  F  G  I  V  *  Q  W  L  F  C  T  L  L  M  D  L  N  L  F  I  *  I  N  Q  L  L  L  S  S  F  E  C  S  T  N  I  L  T  C  C  Y  V  I  T  I  L  V  N  G  R  T  V  G  D  N  A  K  Q  F  Q  G  A  E  Q  G  G  *  G  N  C  *  N  F  G  T  S  T  F  L  H  V  F  S  Y  S  I  D  I  L  *  T  M  *  Y  L  F  K  L  N  N  M  M  *  C  F  T  I  Q  Y  T  Y  I  S  M  A  I  *  *  S  S  K  F  F  I  L  Y  Q  E  V  H  R  L  I  V  H  M  *  R  K  V  C  L  Y  L  I  *  I  F  N  N  L  V  M  G  D  M  </second_frame>
            <third_frame>   L  R  P  E  F  I  D  F  D  V  N  Y  K  Q  F  F  *  G  F  S  P  L  F  E  Y  C  I  L  F  N  F  L  Y  R  C  T  N  V  L  R  K  T  *  S  *  G  F  R  D  V  N  S  W  I  L  L  L  F  M  D  S  V  I  *  D  K  *  M  S  L  F  V  L  Y  F  D  I  S  F  *  W  *  D  Y  *  Y  W  G  E  F  F  G  T  R  I  I  R  C  I  H  I  I  I  E  *  A  V  F  V  D  L  A  L  C  F  F  C  F  P  L  G  R  L  K  N  P  V  L  *  S  E  D  G  D  L  I  S  Y  S  L  V  E  R  N  L  C  Y  Y  Y  L  G  L  T  M  R  Y  T  F  N  S  T  *  F  Y  M  L  S  *  S  L  M  K  F  D  L  F  L  F  L  *  T  I  I  V  E  F  C  V  Y  G  Y  D  D  Y  F  P  R  *  S  K  L  K  L  L  S  A  F  T  V  F  S  P  Y  *  E  K  I  Q  A  R  Y  S  D  P  S  L  M  F  C  I  Y  R  V  E  I  C  T  F  M  S  S  S  A  I  I  P  I  S  V  F  F  *  N  N  F  *  *  N  I  L  I  I  M  V  C  K  D  D  E  E  I  I  R  I  P  T  D  V  F  N  V  I  T  T  T  S  Y  F  *  L  H  I  I  A  L  P  F  P  L  L  S  F  F  L  T  F  M  Y  C  F  L  L  L  L  I  L  A  *  R  L  *  F  L  E  L  F  N  N  G  C  F  V  L  Y  L  W  I  *  I  Y  L  Y  E  S  I  N  C  S  Y  L  H  L  N  V  V  Q  T  Y  *  P  V  A  T  *  *  P  S  L  *  M  E  E  Q  S  A  T  M  R  S  N  F  R  E  Q  N  K  V  V  E  G  I  V  E  I  L  E  H  Q  L  F  F  M  F  S  V  I  V  *  T  F  C  E  L  C  N  T  C  L  N  *  I  I  *  C  D  A  S  Q  Y  N  I  H  I  F  R  W  L  S  N  E  V  Q  N  F  L  S  Y  I  K  K  C  I  V  S  *  F  I  C  R  E  R  S  V  Y  I  S  F  K  S  S  I  I  W  *  W  E  I  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108411" stop="108692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLNLLILMSTTSNSSEDFPHCLNTVFFLTFYIDVQMYLEKLDHEVLEMSIVGSCYYLWIQSFEINKCHFLFYTLIFHFDGKTIDIGASFLVLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="113100" PGL_stop="110571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113100" e_stop="113015"/>
            <exon e_start="111216" e_stop="110571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113100" e_stop="113015" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="113014" i_stop="111217" i_length="1798"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="111216" e_stop="110571" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113100" stop="113015"/>
              <exon start="111216" stop="110571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAATTGTGTTTCAACTCGCTGCTACGGAGCATTGAGCATTTGCTGCCGCCGGCTGTATCGCTCGCCGCCGTTCAATCCTTCCGAG : GATAGAGCCAACTTTGGCGACCTTGAAAAATAGGTAGCGCTGGGTGTTATTTTGAAGGGAAAAGATAAGCATTATGAGAACAACATTAGTGAGACAGAAGGGTATCAAGATTTATTGGAAATATTACAGTAGTCTTTGCCATCCCAAGGTGAATGAGACACGTTCTTCAACAAACTTGCGTTCATTTAGCAGCTCCAACAAATTCAGCGATTACTCTGATGAATCCGCTGAATCCAACTATCCTCCTCCTCCTGAGCCTATACCAAATAGGCCCTTACGAGCTGATTCCAGGAGGCCCTTCAATCCATCCCAAAGACAGCATCCAAGCAACAGAAGCAGCCCCAATCATTCTACAACTTTTAGAAGATCCAGTGAGAACAATGAAAGTCAAATGAAATCCCAGGATAGTGAAGATTTTCTGAAAAGATTTCAGCTTGGATTTGATCGTAAAGAGGAAAACCCAAACACAAACCCCAAAGCTGAAAGTAGAGACTGTCCTGTTTCAGAGGCACCTCCAGCTCCACCAGAAGATGCTGATGAGATATTCAAGAAAATGAAAGAAACTGGCTTAATACCTAATGCTGTAGCAATGCTTGATGGGCTCTGCAAGGACGGCTTGGTACAGGAAGCGATGAAGCTCTTTGGC</gDNA_template>
            <first_frame> R  I  V  F  Q  L  A  A  T  E  H  *  A  F  A  A  A  G  C  I  A  R  R  R  S  I  L  P  R :   I  E  P  T  L  A  T  L  K  N  R  *  R  W  V  L  F  *  R  E  K  I  S  I  M  R  T  T  L  V  R  Q  K  G  I  K  I  Y  W  K  Y  Y  S  S  L  C  H  P  K  V  N  E  T  R  S  S  T  N  L  R  S  F  S  S  S  N  K  F  S  D  Y  S  D  E  S  A  E  S  N  Y  P  P  P  P  E  P  I  P  N  R  P  L  R  A  D  S  R  R  P  F  N  P  S  Q  R  Q  H  P  S  N  R  S  S  P  N  H  S  T  T  F  R  R  S  S  E  N  N  E  S  Q  M  K  S  Q  D  S  E  D  F  L  K  R  F  Q  L  G  F  D  R  K  E  E  N  P  N  T  N  P  K  A  E  S  R  D  C  P  V  S  E  A  P  P  A  P  P  E  D  A  D  E  I  F  K  K  M  K  E  T  G  L  I  P  N  A  V  A  M  L  D  G  L  C  K  D  G  L  V  Q  E  A  M  K  L  F  G </first_frame>
            <second_frame>  E  L  C  F  N  S  L  L  R  S  I  E  H  L  L  P  P  A  V  S  L  A  A  V  Q  S  F  R   : G  *  S  Q  L  W  R  P  *  K  I  G  S  A  G  C  Y  F  E  G  K  R  *  A  L  *  E  Q  H  *  *  D  R  R  V  S  R  F  I  G  N  I  T  V  V  F  A  I  P  R  *  M  R  H  V  L  Q  Q  T  C  V  H  L  A  A  P  T  N  S  A  I  T  L  M  N  P  L  N  P  T  I  L  L  L  L  S  L  Y  Q  I  G  P  Y  E  L  I  P  G  G  P  S  I  H  P  K  D  S  I  Q  A  T  E  A  A  P  I  I  L  Q  L  L  E  D  P  V  R  T  M  K  V  K  *  N  P  R  I  V  K  I  F  *  K  D  F  S  L  D  L  I  V  K  R  K  T  Q  T  Q  T  P  K  L  K  V  E  T  V  L  F  Q  R  H  L  Q  L  H  Q  K  M  L  M  R  Y  S  R  K  *  K  K  L  A  *  Y  L  M  L  *  Q  C  L  M  G  S  A  R  T  A  W  Y  R  K  R  *  S  S  L   </second_frame>
            <third_frame>   N  C  V  S  T  R  C  Y  G  A  L  S  I  C  C  R  R  L  Y  R  S  P  P  F  N  P  S  E  :  D  R  A  N  F  G  D  L  E  K  *  V  A  L  G  V  I  L  K  G  K  D  K  H  Y  E  N  N  I  S  E  T  E  G  Y  Q  D  L  L  E  I  L  Q  *  S  L  P  S  Q  G  E  *  D  T  F  F  N  K  L  A  F  I  *  Q  L  Q  Q  I  Q  R  L  L  *  *  I  R  *  I  Q  L  S  S  S  S  *  A  Y  T  K  *  A  L  T  S  *  F  Q  E  A  L  Q  S  I  P  K  T  A  S  K  Q  Q  K  Q  P  Q  S  F  Y  N  F  *  K  I  Q  *  E  Q  *  K  S  N  E  I  P  G  *  *  R  F  S  E  K  I  S  A  W  I  *  S  *  R  G  K  P  K  H  K  P  Q  S  *  K  *  R  L  S  C  F  R  G  T  S  S  S  T  R  R  C  *  *  D  I  Q  E  N  E  R  N  W  L  N  T  *  C  C  S  N  A  *  W  A  L  Q  G  R  L  G  T  G  S  D  E  A  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111161" stop="110571"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKISIMRTTLVRQKGIKIYWKYYSSLCHPKVNETRSSTNLRSFSSSNKFSDYSDESAESNYPPPPEPIPNRPLRADSRRPFNPSQRQHPSNRSSPNHSTTFRRSSENNESQMKSQDSEDFLKRFQLGFDRKEENPNTNPKAESRDCPVSEAPPAPPEDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEAMKLFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="114026" PGL_stop="116743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114035" e_stop="114063"/>
            <exon e_start="115242" e_stop="115363"/>
            <exon e_start="115466" e_stop="115599"/>
            <exon e_start="115980" e_stop="116138"/>
            <exon e_start="116239" e_stop="116743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114035" e_stop="114063" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.772">
            <gDNA_intron_boundary i_start="114064" i_stop="115241" i_length="1178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115242" e_stop="115363" e_length="122"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.741">
            <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115466" e_stop="115599" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115980" e_stop="116138" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="116239" e_stop="116743" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114035" stop="114063"/>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114035" stop="114063"/>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114036" stop="114063"/>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114038" stop="114063"/>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114038" stop="114063"/>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114042" stop="114063"/>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115247" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279057" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115305" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115316" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115316" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115324" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115325" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115356" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416299" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115478" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAACTTCAGCTTTGCTCGATTTCTCG : CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG : CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA : GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG : GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTATATTCTTGCTCTTGATGTGTTTGATTTGTTCTCTGCATCGATATTTATCCAACGAGTTGTGTTATATACGATCTGTAGTTGTTTTAG</gDNA_template>
            <first_frame> K  K  L  Q  L  C  S  I  S  R :   I  H  R  *  T  M  K  H  N  N  V  I  P  N  G  H  F  K  K  H  W  Q  N  Y  V  R  T  W  F  N  Q  P  A  R  K  T  R  R  R  A   : A  R  Q  K  K  A  A  T  I  F  P  R  P  T  A  G  S  L  R  P  I  V  H  G  Q  T  L  K  Y  N  M  K  V  R  A  G  R  G  F  S  L  E  E  L  K  :  A  A  G  I  P  K  K  L  A  P  T  I  G  I  A  V  D  H  R  R  R  N  R  S  L  E  G  L  Q  T  N  V  Q  R  L  K  T  Y  K  A  K  L  V  I  F  P  R  H  A  K  K  V  K  :  A  G  D  S  S  A  E  E  L  A  N  A  T  Q  V  Q  G  P  Y  L  P  I  V  R  D  Q  P  A  I  E  L  V  K  I  T  D  E  M  K  S  F  K  A  Y  G  K  L  R  I  E  R  T  N  A  R  H  F  G  A  R  L  K  R  A  A  E  A  E  K  E  E  K  K  *  D  I  S  N  V  L  *  P  L  H  T  S  I  A  K  F  F  L  H  E  S  K  *  *  I  I  F  E  Y  Y  Y  F  M  *  F  F  F  P  Y  S  S  M  E  S  V  T  T  S  Q  D  Y  N  S  H  S  S  I  S  L  K  R  K  V  L  V  I  F  L  L  L  M  C  L  I  C  S  L  H  R  Y  L  S  N  E  L  C  Y  I  R  S  V  V  V  L  </first_frame>
            <second_frame>  K  N  F  S  F  A  R  F  L   : A  Y  T  G  K  P  *  S  I  T  M  L  S  P  T  A  T  L  R  S  I  G  K  T  M  *  G  H  G  L  T  N  L  L  A  K  Q  G  D  V  L  :  L  G  R  R  K  L  Q  Q  S  S  L  G  Q  Q  Q  D  H  S  D  L  L  F  M  D  K  H  *  N  T  T  *  K  S  E  L  A  G  D  S  L  *  K  S  *  K :   Q  L  V  S  P  K  N  L  L  Q  L  S  A  L  L  W  I  T  G  A  G  T  D  P  L  K  V  S  R  P  T  S  R  D  S  R  H  T  K  L  S  S  L  S  S  Q  G  M  L  R  K  S  R :   L  V  I  L  V  L  R  N  L  L  M  P  P  K  S  R  V  L  T  C  L  L  L  E  I  S  Q  L  S  S  L  *  R  S  Q  M  K  *  N  H  S  K  L  M  A  S  C  V  L  S  V  P  M  L  V  I  L  V  L  G  *  R  E  Q  L  K  L  R  R  K  R  R  N  K  T  F  L  M  S  Y  S  P  C  T  L  A  L  L  N  F  F  C  T  S  L  N  D  E  L  F  L  S  T  I  I  S  C  N  F  F  F  R  T  R  R  W  S  L  L  R  R  V  K  T  I  T  P  I  V  V  Y  P  *  N  V  R  F  W  L  Y  S  C  S  *  C  V  *  F  V  L  C  I  D  I  Y  P  T  S  C  V  I  Y  D  L  *  L  F  * </second_frame>
            <third_frame>   K  T  S  A  L  L  D  F  S  :  H  T  Q  V  N  H  E  A  *  Q  C  Y  P  Q  R  P  L  *  E  A  L  A  K  L  C  E  D  M  V  *  P  T  C  S  Q  N  K  E  T  C  C :   *  A  E  E  S  C  N  N  L  P  *  A  N  S  R  I  T  Q  T  Y  C  S  W  T  N  T  K  I  Q  H  E  S  Q  S  W  P  G  I  L  S  R  R  A  E   : S  S  W  Y  P  Q  K  T  C  S  N  Y  R  H  C  C  G  S  Q  A  Q  E  Q  I  P  *  R  S  P  D  Q  R  P  E  T  Q  D  I  Q  S  *  A  R  Y  L  P  K  A  C  *  E  S  Q   : G  W  *  F  *  C  *  G  T  C  *  C  H  P  S  P  G  S  L  L  A  Y  C  *  R  S  A  S  Y  R  A  C  E  D  H  R  *  N  E  I  I  Q  S  L  W  Q  A  A  Y  *  A  Y  Q  C  S  S  F  W  C  *  V  E  E  S  S  *  S  *  E  G  R  E  E  I  R  H  F  *  C  L  I  A  L  A  H  *  H  C  *  I  F  F  A  R  V  *  M  M  N  Y  F  *  V  L  L  F  H  V  I  F  F  S  V  L  V  D  G  V  C  Y  D  E  S  R  L  *  L  P  *  *  Y  I  L  K  T  *  G  F  G  Y  I  L  A  L  D  V  F  D  L  F  S  A  S  I  F  I  Q  R  V  V  L  Y  T  I  C  S  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115255" stop="115363"/>
                    <exon start="115466" stop="115599"/>
                    <exon start="115980" stop="116138"/>
                    <exon start="116239" stop="116460"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMKHNNVIPNGHFKKHWQNYVRTWFNQPARKTRRRAARQKKAATIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVIFPRHAKKVKAGDSSAEELANATQVQGPYLPIVRDQPAIELVKITDEMKSFKAYGKLRIERTNARHFGARLKRAAEAEKEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115238" e_stop="115363"/>
            <exon e_start="115466" e_stop="115599"/>
            <exon e_start="115980" e_stop="116138"/>
            <exon e_start="116239" e_stop="116656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115238" e_stop="115363" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.741">
            <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115466" e_stop="115599" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115980" e_stop="116138" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116239" e_stop="116656" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115238" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115247" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279057" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115305" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115316" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115316" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115324" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115325" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115356" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416299" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115478" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG : CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA : GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG : GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTA</gDNA_template>
            <first_frame> S  A  Y  T  G  K  P  *  S  I  T  M  L  S  P  T  A  T  L  R  S  I  G  K  T  M  *  G  H  G  L  T  N  L  L  A  K  Q  G  D  V  L  :  L  G  R  R  K  L  Q  Q  S  S  L  G  Q  Q  Q  D  H  S  D  L  L  F  M  D  K  H  *  N  T  T  *  K  S  E  L  A  G  D  S  L  *  K  S  *  K :   Q  L  V  S  P  K  N  L  L  Q  L  S  A  L  L  W  I  T  G  A  G  T  D  P  L  K  V  S  R  P  T  S  R  D  S  R  H  T  K  L  S  S  L  S  S  Q  G  M  L  R  K  S  R :   L  V  I  L  V  L  R  N  L  L  M  P  P  K  S  R  V  L  T  C  L  L  L  E  I  S  Q  L  S  S  L  *  R  S  Q  M  K  *  N  H  S  K  L  M  A  S  C  V  L  S  V  P  M  L  V  I  L  V  L  G  *  R  E  Q  L  K  L  R  R  K  R  R  N  K  T  F  L  M  S  Y  S  P  C  T  L  A  L  L  N  F  F  C  T  S  L  N  D  E  L  F  L  S  T  I  I  S  C  N  F  F  F  R  T  R  R  W  S  L  L  R  R  V  K  T  I  T  P  I  V  V  Y  P  *  N  V  R  F  W  L </first_frame>
            <second_frame>  Q  H  T  Q  V  N  H  E  A  *  Q  C  Y  P  Q  R  P  L  *  E  A  L  A  K  L  C  E  D  M  V  *  P  T  C  S  Q  N  K  E  T  C  C :   *  A  E  E  S  C  N  N  L  P  *  A  N  S  R  I  T  Q  T  Y  C  S  W  T  N  T  K  I  Q  H  E  S  Q  S  W  P  G  I  L  S  R  R  A  E   : S  S  W  Y  P  Q  K  T  C  S  N  Y  R  H  C  C  G  S  Q  A  Q  E  Q  I  P  *  R  S  P  D  Q  R  P  E  T  Q  D  I  Q  S  *  A  R  Y  L  P  K  A  C  *  E  S  Q   : G  W  *  F  *  C  *  G  T  C  *  C  H  P  S  P  G  S  L  L  A  Y  C  *  R  S  A  S  Y  R  A  C  E  D  H  R  *  N  E  I  I  Q  S  L  W  Q  A  A  Y  *  A  Y  Q  C  S  S  F  W  C  *  V  E  E  S  S  *  S  *  E  G  R  E  E  I  R  H  F  *  C  L  I  A  L  A  H  *  H  C  *  I  F  F  A  R  V  *  M  M  N  Y  F  *  V  L  L  F  H  V  I  F  F  S  V  L  V  D  G  V  C  Y  D  E  S  R  L  *  L  P  *  *  Y  I  L  K  T  *  G  F  G   </second_frame>
            <third_frame>   S  I  H  R  *  T  M  K  H  N  N  V  I  P  N  G  H  F  K  K  H  W  Q  N  Y  V  R  T  W  F  N  Q  P  A  R  K  T  R  R  R  A   : A  R  Q  K  K  A  A  T  I  F  P  R  P  T  A  G  S  L  R  P  I  V  H  G  Q  T  L  K  Y  N  M  K  V  R  A  G  R  G  F  S  L  E  E  L  K  :  A  A  G  I  P  K  K  L  A  P  T  I  G  I  A  V  D  H  R  R  R  N  R  S  L  E  G  L  Q  T  N  V  Q  R  L  K  T  Y  K  A  K  L  V  I  F  P  R  H  A  K  K  V  K  :  A  G  D  S  S  A  E  E  L  A  N  A  T  Q  V  Q  G  P  Y  L  P  I  V  R  D  Q  P  A  I  E  L  V  K  I  T  D  E  M  K  S  F  K  A  Y  G  K  L  R  I  E  R  T  N  A  R  H  F  G  A  R  L  K  R  A  A  E  A  E  K  E  E  K  K  *  D  I  S  N  V  L  *  P  L  H  T  S  I  A  K  F  F  L  H  E  S  K  *  *  I  I  F  E  Y  Y  Y  F  M  *  F  F  F  P  Y  S  S  M  E  S  V  T  T  S  Q  D  Y  N  S  H  S  S  I  S  L  K  R  K  V  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115255" stop="115363"/>
                    <exon start="115466" stop="115599"/>
                    <exon start="115980" stop="116138"/>
                    <exon start="116239" stop="116460"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMKHNNVIPNGHFKKHWQNYVRTWFNQPARKTRRRAARQKKAATIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVIFPRHAKKVKAGDSSAEELANATQVQGPYLPIVRDQPAIELVKITDEMKSFKAYGKLRIERTNARHFGARLKRAAEAEKEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="114026" e_stop="114063"/>
            <exon e_start="115251" e_stop="115363"/>
            <exon e_start="115466" e_stop="115599"/>
            <exon e_start="115980" e_stop="116138"/>
            <exon e_start="116239" e_stop="116656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114026" e_stop="114063" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.817">
            <gDNA_intron_boundary i_start="114064" i_stop="115250" i_length="1187"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115251" e_stop="115363" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.741">
            <gDNA_intron_boundary i_start="115364" i_stop="115465" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115466" e_stop="115599" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115980" e_stop="116138" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116239" e_stop="116656" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114026" stop="114063"/>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114039" stop="114063"/>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114040" stop="114063"/>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114040" stop="114063"/>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115251" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279057" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115305" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115316" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115316" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115324" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115325" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115356" stop="115363"/>
              <exon start="115466" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416299" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115478" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGGAGAAAAAAACTTCAGCTTTGCTCGATTTCTCG : GTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG : CTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA : GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG : GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTTA</gDNA_template>
            <first_frame> K  R  R  K  K  L  Q  L  C  S  I  S  R :   *  T  M  K  H  N  N  V  I  P  N  G  H  F  K  K  H  W  Q  N  Y  V  R  T  W  F  N  Q  P  A  R  K  T  R  R  R  A   : A  R  Q  K  K  A  A  T  I  F  P  R  P  T  A  G  S  L  R  P  I  V  H  G  Q  T  L  K  Y  N  M  K  V  R  A  G  R  G  F  S  L  E  E  L  K  :  A  A  G  I  P  K  K  L  A  P  T  I  G  I  A  V  D  H  R  R  R  N  R  S  L  E  G  L  Q  T  N  V  Q  R  L  K  T  Y  K  A  K  L  V  I  F  P  R  H  A  K  K  V  K  :  A  G  D  S  S  A  E  E  L  A  N  A  T  Q  V  Q  G  P  Y  L  P  I  V  R  D  Q  P  A  I  E  L  V  K  I  T  D  E  M  K  S  F  K  A  Y  G  K  L  R  I  E  R  T  N  A  R  H  F  G  A  R  L  K  R  A  A  E  A  E  K  E  E  K  K  *  D  I  S  N  V  L  *  P  L  H  T  S  I  A  K  F  F  L  H  E  S  K  *  *  I  I  F  E  Y  Y  Y  F  M  *  F  F  F  P  Y  S  S  M  E  S  V  T  T  S  Q  D  Y  N  S  H  S  S  I  S  L  K  R  K  V  L  V  </first_frame>
            <second_frame>  K  G  E  K  N  F  S  F  A  R  F  L   : G  K  P  *  S  I  T  M  L  S  P  T  A  T  L  R  S  I  G  K  T  M  *  G  H  G  L  T  N  L  L  A  K  Q  G  D  V  L  :  L  G  R  R  K  L  Q  Q  S  S  L  G  Q  Q  Q  D  H  S  D  L  L  F  M  D  K  H  *  N  T  T  *  K  S  E  L  A  G  D  S  L  *  K  S  *  K :   Q  L  V  S  P  K  N  L  L  Q  L  S  A  L  L  W  I  T  G  A  G  T  D  P  L  K  V  S  R  P  T  S  R  D  S  R  H  T  K  L  S  S  L  S  S  Q  G  M  L  R  K  S  R :   L  V  I  L  V  L  R  N  L  L  M  P  P  K  S  R  V  L  T  C  L  L  L  E  I  S  Q  L  S  S  L  *  R  S  Q  M  K  *  N  H  S  K  L  M  A  S  C  V  L  S  V  P  M  L  V  I  L  V  L  G  *  R  E  Q  L  K  L  R  R  K  R  R  N  K  T  F  L  M  S  Y  S  P  C  T  L  A  L  L  N  F  F  C  T  S  L  N  D  E  L  F  L  S  T  I  I  S  C  N  F  F  F  R  T  R  R  W  S  L  L  R  R  V  K  T  I  T  P  I  V  V  Y  P  *  N  V  R  F  W  L </second_frame>
            <third_frame>   K  E  K  K  T  S  A  L  L  D  F  S  :  V  N  H  E  A  *  Q  C  Y  P  Q  R  P  L  *  E  A  L  A  K  L  C  E  D  M  V  *  P  T  C  S  Q  N  K  E  T  C  C :   *  A  E  E  S  C  N  N  L  P  *  A  N  S  R  I  T  Q  T  Y  C  S  W  T  N  T  K  I  Q  H  E  S  Q  S  W  P  G  I  L  S  R  R  A  E   : S  S  W  Y  P  Q  K  T  C  S  N  Y  R  H  C  C  G  S  Q  A  Q  E  Q  I  P  *  R  S  P  D  Q  R  P  E  T  Q  D  I  Q  S  *  A  R  Y  L  P  K  A  C  *  E  S  Q   : G  W  *  F  *  C  *  G  T  C  *  C  H  P  S  P  G  S  L  L  A  Y  C  *  R  S  A  S  Y  R  A  C  E  D  H  R  *  N  E  I  I  Q  S  L  W  Q  A  A  Y  *  A  Y  Q  C  S  S  F  W  C  *  V  E  E  S  S  *  S  *  E  G  R  E  E  I  R  H  F  *  C  L  I  A  L  A  H  *  H  C  *  I  F  F  A  R  V  *  M  M  N  Y  F  *  V  L  L  F  H  V  I  F  F  S  V  L  V  D  G  V  C  Y  D  E  S  R  L  *  L  P  *  *  Y  I  L  K  T  *  G  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115255" stop="115363"/>
                    <exon start="115466" stop="115599"/>
                    <exon start="115980" stop="116138"/>
                    <exon start="116239" stop="116460"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMKHNNVIPNGHFKKHWQNYVRTWFNQPARKTRRRAARQKKAATIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVIFPRHAKKVKAGDSSAEELANATQVQGPYLPIVRDQPAIELVKITDEMKSFKAYGKLRIERTNARHFGARLKRAAEAEKEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="115242" e_stop="115599"/>
            <exon e_start="115980" e_stop="116138"/>
            <exon e_start="116239" e_stop="116655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.925"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="115242" e_stop="115599" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="115980" e_stop="116138" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116239" e_stop="116655" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115478" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTGGTGAGTTTCCCCATTTTTTGATAGCTGGCTTTAAGCCTCAAATTCATCATTGGCTCAAGAATACTTACACTTCCTGACCTGTTTTGCTTTTGCCAACTCCAGCTAGGCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA : GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG : GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTT</gDNA_template>
            <first_frame> H  T  Q  V  N  H  E  A  *  Q  C  Y  P  Q  R  P  L  *  E  A  L  A  K  L  C  E  D  M  V  *  P  T  C  S  Q  N  K  E  T  C  W  *  V  S  P  F  F  D  S  W  L  *  A  S  N  S  S  L  A  Q  E  Y  L  H  F  L  T  C  F  A  F  A  N  S  S  *  A  E  E  S  C  N  N  L  P  *  A  N  S  R  I  T  Q  T  Y  C  S  W  T  N  T  K  I  Q  H  E  S  Q  S  W  P  G  I  L  S  R  R  A  E   : S  S  W  Y  P  Q  K  T  C  S  N  Y  R  H  C  C  G  S  Q  A  Q  E  Q  I  P  *  R  S  P  D  Q  R  P  E  T  Q  D  I  Q  S  *  A  R  Y  L  P  K  A  C  *  E  S  Q   : G  W  *  F  *  C  *  G  T  C  *  C  H  P  S  P  G  S  L  L  A  Y  C  *  R  S  A  S  Y  R  A  C  E  D  H  R  *  N  E  I  I  Q  S  L  W  Q  A  A  Y  *  A  Y  Q  C  S  S  F  W  C  *  V  E  E  S  S  *  S  *  E  G  R  E  E  I  R  H  F  *  C  L  I  A  L  A  H  *  H  C  *  I  F  F  A  R  V  *  M  M  N  Y  F  *  V  L  L  F  H  V  I  F  F  S  V  L  V  D  G  V  C  Y  D  E  S  R  L  *  L  P  *  *  Y  I  L  K  T  *  G  F  G  </first_frame>
            <second_frame>  I  H  R  *  T  M  K  H  N  N  V  I  P  N  G  H  F  K  K  H  W  Q  N  Y  V  R  T  W  F  N  Q  P  A  R  K  T  R  R  R  A  G  E  F  P  H  F  L  I  A  G  F  K  P  Q  I  H  H  W  L  K  N  T  Y  T  S  *  P  V  L  L  L  P  T  P  A  R  Q  K  K  A  A  T  I  F  P  R  P  T  A  G  S  L  R  P  I  V  H  G  Q  T  L  K  Y  N  M  K  V  R  A  G  R  G  F  S  L  E  E  L  K  :  A  A  G  I  P  K  K  L  A  P  T  I  G  I  A  V  D  H  R  R  R  N  R  S  L  E  G  L  Q  T  N  V  Q  R  L  K  T  Y  K  A  K  L  V  I  F  P  R  H  A  K  K  V  K  :  A  G  D  S  S  A  E  E  L  A  N  A  T  Q  V  Q  G  P  Y  L  P  I  V  R  D  Q  P  A  I  E  L  V  K  I  T  D  E  M  K  S  F  K  A  Y  G  K  L  R  I  E  R  T  N  A  R  H  F  G  A  R  L  K  R  A  A  E  A  E  K  E  E  K  K  *  D  I  S  N  V  L  *  P  L  H  T  S  I  A  K  F  F  L  H  E  S  K  *  *  I  I  F  E  Y  Y  Y  F  M  *  F  F  F  P  Y  S  S  M  E  S  V  T  T  S  Q  D  Y  N  S  H  S  S  I  S  L  K  R  K  V  L  V </second_frame>
            <third_frame>   Y  T  G  K  P  *  S  I  T  M  L  S  P  T  A  T  L  R  S  I  G  K  T  M  *  G  H  G  L  T  N  L  L  A  K  Q  G  D  V  L  V  S  F  P  I  F  *  *  L  A  L  S  L  K  F  I  I  G  S  R  I  L  T  L  P  D  L  F  C  F  C  Q  L  Q  L  G  R  R  K  L  Q  Q  S  S  L  G  Q  Q  Q  D  H  S  D  L  L  F  M  D  K  H  *  N  T  T  *  K  S  E  L  A  G  D  S  L  *  K  S  *  K :   Q  L  V  S  P  K  N  L  L  Q  L  S  A  L  L  W  I  T  G  A  G  T  D  P  L  K  V  S  R  P  T  S  R  D  S  R  H  T  K  L  S  S  L  S  S  Q  G  M  L  R  K  S  R :   L  V  I  L  V  L  R  N  L  L  M  P  P  K  S  R  V  L  T  C  L  L  L  E  I  S  Q  L  S  S  L  *  R  S  Q  M  K  *  N  H  S  K  L  M  A  S  C  V  L  S  V  P  M  L  V  I  L  V  L  G  *  R  E  Q  L  K  L  R  R  K  R  R  N  K  T  F  L  M  S  Y  S  P  C  T  L  A  L  L  N  F  F  C  T  S  L  N  D  E  L  F  L  S  T  I  I  S  C  N  F  F  F  R  T  R  R  W  S  L  L  R  R  V  K  T  I  T  P  I  V  V  Y  P  *  N  V  R  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115441" stop="115599"/>
                    <exon start="115980" stop="116138"/>
                    <exon start="116239" stop="116460"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVLLLPTPARQKKAATIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVIFPRHAKKVKAGDSSAEELANATQVQGPYLPIVRDQPAIELVKITDEMKSFKAYGKLRIERTNARHFGARLKRAAEAEKEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="115242" e_stop="115363"/>
            <exon e_start="115470" e_stop="115599"/>
            <exon e_start="115980" e_stop="116138"/>
            <exon e_start="116239" e_stop="116655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.967"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.578" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="115242" e_stop="115363" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115364" i_stop="115469" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="115470" e_stop="115599" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="115600" i_stop="115979" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="115980" e_stop="116138" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.578">
            <gDNA_intron_boundary i_start="116139" i_stop="116238" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116239" e_stop="116655" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115363"/>
              <exon start="115470" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115478" stop="115599"/>
              <exon start="115980" stop="116138"/>
              <exon start="116239" stop="116655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACACAGGTAAACCATGAAGCATAACAATGTTATCCCCAACGGCCACTTTAAGAAGCATTGGCAAAACTATGTGAGGACATGGTTTAACCAACCTGCTCGCAAAACAAGGAGACGTGCTG : GCAGAAGAAAGCTGCAACAATCTTCCCTAGGCCAACAGCAGGATCACTCAGACCTATTGTTCATGGACAAACACTAAAATACAACATGAAAGTCAGAGCTGGCCGGGGATTCTCTCTAGAAGAGCTGAAA : GCAGCTGGTATCCCCAAAAAACTTGCTCCAACTATCGGCATTGCTGTGGATCACAGGCGCAGGAACAGATCCCTTGAAGGTCTCCAGACCAACGTCCAGAGACTCAAGACATACAAAGCTAAGCTCGTTATCTTCCCAAGGCATGCTAAGAAAGTCAAG : GCTGGTGATTCTAGTGCTGAGGAACTTGCTAATGCCACCCAAGTCCAGGGTCCTTACTTGCCTATTGTTAGAGATCAGCCAGCTATCGAGCTTGTGAAGATCACAGATGAAATGAAATCATTCAAAGCTTATGGCAAGCTGCGTATTGAGCGTACCAATGCTCGTCATTTTGGTGCTAGGTTGAAGAGAGCAGCTGAAGCTGAGAAGGAAGAGAAGAAATAAGACATTTCTAATGTCTTATAGCCCTTGCACACTAGCATTGCTAAATTTTTTTTGCACGAGTCTAAATGATGAATTATTTTTGAGTACTATTATTTCATGTAATTTTTTTTTCCGTACTCGTCGATGGAGTCTGTTACGACGAGTCAAGACTATAACTCCCATAGTAGTATATCCTTAAAACGTAAGGTTTTGGTT</gDNA_template>
            <first_frame> H  T  Q  V  N  H  E  A  *  Q  C  Y  P  Q  R  P  L  *  E  A  L  A  K  L  C  E  D  M  V  *  P  T  C  S  Q  N  K  E  T  C  W :   Q  K  K  A  A  T  I  F  P  R  P  T  A  G  S  L  R  P  I  V  H  G  Q  T  L  K  Y  N  M  K  V  R  A  G  R  G  F  S  L  E  E  L  K  :  A  A  G  I  P  K  K  L  A  P  T  I  G  I  A  V  D  H  R  R  R  N  R  S  L  E  G  L  Q  T  N  V  Q  R  L  K  T  Y  K  A  K  L  V  I  F  P  R  H  A  K  K  V  K  :  A  G  D  S  S  A  E  E  L  A  N  A  T  Q  V  Q  G  P  Y  L  P  I  V  R  D  Q  P  A  I  E  L  V  K  I  T  D  E  M  K  S  F  K  A  Y  G  K  L  R  I  E  R  T  N  A  R  H  F  G  A  R  L  K  R  A  A  E  A  E  K  E  E  K  K  *  D  I  S  N  V  L  *  P  L  H  T  S  I  A  K  F  F  L  H  E  S  K  *  *  I  I  F  E  Y  Y  Y  F  M  *  F  F  F  P  Y  S  S  M  E  S  V  T  T  S  Q  D  Y  N  S  H  S  S  I  S  L  K  R  K  V  L  V </first_frame>
            <second_frame>  I  H  R  *  T  M  K  H  N  N  V  I  P  N  G  H  F  K  K  H  W  Q  N  Y  V  R  T  W  F  N  Q  P  A  R  K  T  R  R  R  A   : G  R  R  K  L  Q  Q  S  S  L  G  Q  Q  Q  D  H  S  D  L  L  F  M  D  K  H  *  N  T  T  *  K  S  E  L  A  G  D  S  L  *  K  S  *  K :   Q  L  V  S  P  K  N  L  L  Q  L  S  A  L  L  W  I  T  G  A  G  T  D  P  L  K  V  S  R  P  T  S  R  D  S  R  H  T  K  L  S  S  L  S  S  Q  G  M  L  R  K  S  R :   L  V  I  L  V  L  R  N  L  L  M  P  P  K  S  R  V  L  T  C  L  L  L  E  I  S  Q  L  S  S  L  *  R  S  Q  M  K  *  N  H  S  K  L  M  A  S  C  V  L  S  V  P  M  L  V  I  L  V  L  G  *  R  E  Q  L  K  L  R  R  K  R  R  N  K  T  F  L  M  S  Y  S  P  C  T  L  A  L  L  N  F  F  C  T  S  L  N  D  E  L  F  L  S  T  I  I  S  C  N  F  F  F  R  T  R  R  W  S  L  L  R  R  V  K  T  I  T  P  I  V  V  Y  P  *  N  V  R  F  W   </second_frame>
            <third_frame>   Y  T  G  K  P  *  S  I  T  M  L  S  P  T  A  T  L  R  S  I  G  K  T  M  *  G  H  G  L  T  N  L  L  A  K  Q  G  D  V  L  :  A  E  E  S  C  N  N  L  P  *  A  N  S  R  I  T  Q  T  Y  C  S  W  T  N  T  K  I  Q  H  E  S  Q  S  W  P  G  I  L  S  R  R  A  E   : S  S  W  Y  P  Q  K  T  C  S  N  Y  R  H  C  C  G  S  Q  A  Q  E  Q  I  P  *  R  S  P  D  Q  R  P  E  T  Q  D  I  Q  S  *  A  R  Y  L  P  K  A  C  *  E  S  Q   : G  W  *  F  *  C  *  G  T  C  *  C  H  P  S  P  G  S  L  L  A  Y  C  *  R  S  A  S  Y  R  A  C  E  D  H  R  *  N  E  I  I  Q  S  L  W  Q  A  A  Y  *  A  Y  Q  C  S  S  F  W  C  *  V  E  E  S  S  *  S  *  E  G  R  E  E  I  R  H  F  *  C  L  I  A  L  A  H  *  H  C  *  I  F  F  A  R  V  *  M  M  N  Y  F  *  V  L  L  F  H  V  I  F  F  S  V  L  V  D  G  V  C  Y  D  E  S  R  L  *  L  P  *  *  Y  I  L  K  T  *  G  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115332" stop="115363"/>
                    <exon start="115470" stop="115599"/>
                    <exon start="115980" stop="116138"/>
                    <exon start="116239" stop="116460"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTCSQNKETCWQKKAATIFPRPTAGSLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVIFPRHAKKVKAGDSSAEELANATQVQGPYLPIVRDQPAIELVKITDEMKSFKAYGKLRIERTNARHFGARLKRAAEAEKEEKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="123157" PGL_stop="117201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123157" e_stop="122624"/>
            <exon e_start="121392" e_stop="121330"/>
            <exon e_start="121215" e_stop="121099"/>
            <exon e_start="119987" e_stop="119705"/>
            <exon e_start="118535" e_stop="118380"/>
            <exon e_start="117859" e_stop="117708"/>
            <exon e_start="117464" e_stop="117201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="0.938"/>
          <exon-intron don_prob="0.987" acc_prob="0.370" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.992" e_score="0.989"/>
          <exon-intron don_prob="0.990" acc_prob="0.869" e_score="0.987"/>
          <exon-intron don_prob="0.990" acc_prob="0.880" e_score="0.993"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="123157" e_stop="122624" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="122623" i_stop="121393" i_length="1231"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121392" e_stop="121330" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.370">
            <gDNA_intron_boundary i_start="121329" i_stop="121216" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121215" e_stop="121099" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121098" i_stop="119988" i_length="1111"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="119987" e_stop="119705" e_length="283"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.992">
            <gDNA_intron_boundary i_start="119704" i_stop="118536" i_length="1169"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="118535" e_stop="118380" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.869">
            <gDNA_intron_boundary i_start="118379" i_stop="117860" i_length="520"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="117859" e_stop="117708" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.880">
            <gDNA_intron_boundary i_start="117707" i_stop="117465" i_length="243"/>
          </intron>
          <exon e_serial="7" e_score="0.955">
            <gDNA_exon_boundary e_start="117464" e_stop="117201" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123157" stop="122624"/>
              <exon start="121392" stop="121330"/>
              <exon start="121215" stop="121205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123096" stop="122841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123094" stop="122624"/>
              <exon start="121392" stop="121330"/>
              <exon start="121215" stop="121099"/>
              <exon start="119987" stop="119782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123079" stop="122624"/>
              <exon start="121392" stop="121330"/>
              <exon start="121215" stop="121099"/>
              <exon start="119987" stop="119906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122849" stop="122624"/>
              <exon start="121392" stop="121330"/>
              <exon start="121215" stop="121099"/>
              <exon start="119987" stop="119705"/>
              <exon start="118535" stop="118461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119875" stop="119705"/>
              <exon start="118535" stop="118380"/>
              <exon start="117859" stop="117708"/>
              <exon start="117464" stop="117201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591114" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGATTTATAGAAGAAAAAAAAAAGGCTAAAGACTCAAACTTTACTCAAAGATCGATGCAGATTTGGATGTAGGTCACTTCAATTCGTTGAAATCTCAGCTAAATTCTTGATTTTGAACCAATTAGCGAAAACCCCAATTCATGAAAACAACTAGGTGACTGAAATTTTCTGTTAAAAATCATACTTTCTGTTCATTCTATAGCTTAATTATCAAGAATCTTGAAACCCCATCTCACCAACCATCACTATTTTCCACCGATTTTATCATCACAGTCGTTTAGGGGTATAAAGGGGTGGTGGGGGTGGGGTGGATTGTGATGAAATGATAAAAATGGCAGCTGTATCAGTGGGAAATGGGAATGAGGTATGGAGAGCTCATGGAACAATGGCGATGATACAGCTTTTGTATGGTGGATACCATGTGATTACAAAAGTGGCACTCAATGTGGGAATGAATCAAATTGTGTTCTGTTTGTATAGGGATCTTCTTGCTCTATCTATTCTTGCACCAGTTGCCTATGTTCGCGAAAA : GAGGTCGAGGATTCCTTTGAATAGGCGGCTTCTGCTATCCTTCTTCTTTCTAGGATTAACTGG : TATTTTTGGGAACCAACTTTTGTTTCTTATTGGTCTTGGTTACACAAATCCAACATATGCTGCAGCCGTGCAACCTGCAATACCAGTCTTCACATTCATATTTGCAGTATTGATGGG : TACAGAAACAGTGAAGCTTTTTACTGTGGAAGGTCAAGCAAAGGTTGGAGGTACGATTGTTTGTGTTTCTGGGGCAATCTTAATGGCCATCTTCCGTGGACCTGTGGTGTTTGGAGACAGAAGCTCAGAATTCATACACAGTGATATAAGTGCTAAGGGTCAGCCAGAGCCTACTGGATGGTTAATGTCAAGTTTCGTGGAATTGGGTTTTGATGATTGGCACCTCGGTGTTTTATGCTTAATAGGAAACTGTATGTGCATGGCAGCATACTTAGCTATTCAG : GCTCCAGTTTTGGCAAAATACCCTGCAAGTATATCAGTGACGGCATATTCATACCTTTTTGGTTGCCTTTTAATGGTAGCAACAGCCTTCTTTGTGACCGATGAGTCAACCGACTGGAACTTGACACAATCTGAAGCTTTTGCTGTGTGCTATGCT : GGAATTGTTGCATCTGCCCTGAACTACGGAATGTTGACATGGTGCAATAAGATTCTTGGCCCTTCTATGGTTGCGCTATACAATCCACTTCAACCTGCTGCGTCTGCATTTCTATCAAGAGTTTTCCTTGGGAGCCCTATTTATCTAGGAAG : CATATTTGGAGGACTTCTCATTATATCTGGGCTTTACTTGGTAACTTGGGCATCTTACAGACAAAGGCAAGCAGCCATTGGTATCGATCCTCATGCTTCTCGATCGTCGGAACCTCCAATTACATATCAACTAGGACACCTTTTTTCAGTTCCTCCTTCCTCAATACCAAAGATCATTGATTAGGTAGTGCTGTGGATATTCATATTGAAGTGACAATTTTATCAAAACTTTTTTCCTGTATTAGTTAGGAGGCATACAGAAAC</gDNA_template>
            <first_frame> F  R  F  I  E  E  K  K  K  A  K  D  S  N  F  T  Q  R  S  M  Q  I  W  M  *  V  T  S  I  R  *  N  L  S  *  I  L  D  F  E  P  I  S  E  N  P  N  S  *  K  Q  L  G  D  *  N  F  L  L  K  I  I  L  S  V  H  S  I  A  *  L  S  R  I  L  K  P  H  L  T  N  H  H  Y  F  P  P  I  L  S  S  Q  S  F  R  G  I  K  G  W  W  G  W  G  G  L  *  *  N  D  K  N  G  S  C  I  S  G  K  W  E  *  G  M  E  S  S  W  N  N  G  D  D  T  A  F  V  W  W  I  P  C  D  Y  K  S  G  T  Q  C  G  N  E  S  N  C  V  L  F  V  *  G  S  S  C  S  I  Y  S  C  T  S  C  L  C  S  R  K  :  E  V  E  D  S  F  E  *  A  A  S  A  I  L  L  L  S  R  I  N  W  :  Y  F  W  E  P  T  F  V  S  Y  W  S  W  L  H  K  S  N  I  C  C  S  R  A  T  C  N  T  S  L  H  I  H  I  C  S  I  D  G  :  Y  R  N  S  E  A  F  Y  C  G  R  S  S  K  G  W  R  Y  D  C  L  C  F  W  G  N  L  N  G  H  L  P  W  T  C  G  V  W  R  Q  K  L  R  I  H  T  Q  *  Y  K  C  *  G  S  A  R  A  Y  W  M  V  N  V  K  F  R  G  I  G  F  *  *  L  A  P  R  C  F  M  L  N  R  K  L  Y  V  H  G  S  I  L  S  Y  S   : G  S  S  F  G  K  I  P  C  K  Y  I  S  D  G  I  F  I  P  F  W  L  P  F  N  G  S  N  S  L  L  C  D  R  *  V  N  R  L  E  L  D  T  I  *  S  F  C  C  V  L  C   : W  N  C  C  I  C  P  E  L  R  N  V  D  M  V  Q  *  D  S  W  P  F  Y  G  C  A  I  Q  S  T  S  T  C  C  V  C  I  S  I  K  S  F  P  W  E  P  Y  L  S  R  K  :  H  I  W  R  T  S  H  Y  I  W  A  L  L  G  N  L  G  I  L  Q  T  K  A  S  S  H  W  Y  R  S  S  C  F  S  I  V  G  T  S  N  Y  I  S  T  R  T  P  F  F  S  S  S  F  L  N  T  K  D  H  *  L  G  S  A  V  D  I  H  I  E  V  T  I  L  S  K  L  F  S  C  I  S  *  E  A  Y  R  N </first_frame>
            <second_frame>  L  D  L  *  K  K  K  K  R  L  K  T  Q  T  L  L  K  D  R  C  R  F  G  C  R  S  L  Q  F  V  E  I  S  A  K  F  L  I  L  N  Q  L  A  K  T  P  I  H  E  N  N  *  V  T  E  I  F  C  *  K  S  Y  F  L  F  I  L  *  L  N  Y  Q  E  S  *  N  P  I  S  P  T  I  T  I  F  H  R  F  Y  H  H  S  R  L  G  V  *  R  G  G  G  G  G  V  D  C  D  E  M  I  K  M  A  A  V  S  V  G  N  G  N  E  V  W  R  A  H  G  T  M  A  M  I  Q  L  L  Y  G  G  Y  H  V  I  T  K  V  A  L  N  V  G  M  N  Q  I  V  F  C  L  Y  R  D  L  L  A  L  S  I  L  A  P  V  A  Y  V  R  E  K :   R  S  R  I  P  L  N  R  R  L  L  L  S  F  F  F  L  G  L  T  G :   I  F  G  N  Q  L  L  F  L  I  G  L  G  Y  T  N  P  T  Y  A  A  A  V  Q  P  A  I  P  V  F  T  F  I  F  A  V  L  M  G :   T  E  T  V  K  L  F  T  V  E  G  Q  A  K  V  G  G  T  I  V  C  V  S  G  A  I  L  M  A  I  F  R  G  P  V  V  F  G  D  R  S  S  E  F  I  H  S  D  I  S  A  K  G  Q  P  E  P  T  G  W  L  M  S  S  F  V  E  L  G  F  D  D  W  H  L  G  V  L  C  L  I  G  N  C  M  C  M  A  A  Y  L  A  I  Q  :  A  P  V  L  A  K  Y  P  A  S  I  S  V  T  A  Y  S  Y  L  F  G  C  L  L  M  V  A  T  A  F  F  V  T  D  E  S  T  D  W  N  L  T  Q  S  E  A  F  A  V  C  Y  A  :  G  I  V  A  S  A  L  N  Y  G  M  L  T  W  C  N  K  I  L  G  P  S  M  V  A  L  Y  N  P  L  Q  P  A  A  S  A  F  L  S  R  V  F  L  G  S  P  I  Y  L  G  S :   I  F  G  G  L  L  I  I  S  G  L  Y  L  V  T  W  A  S  Y  R  Q  R  Q  A  A  I  G  I  D  P  H  A  S  R  S  S  E  P  P  I  T  Y  Q  L  G  H  L  F  S  V  P  P  S  S  I  P  K  I  I  D  *  V  V  L  W  I  F  I  L  K  *  Q  F  Y  Q  N  F  F  P  V  L  V  R  R  H  T  E   </second_frame>
            <third_frame>   *  I  Y  R  R  K  K  K  G  *  R  L  K  L  Y  S  K  I  D  A  D  L  D  V  G  H  F  N  S  L  K  S  Q  L  N  S  *  F  *  T  N  *  R  K  P  Q  F  M  K  T  T  R  *  L  K  F  S  V  K  N  H  T  F  C  S  F  Y  S  L  I  I  K  N  L  E  T  P  S  H  Q  P  S  L  F  S  T  D  F  I  I  T  V  V  *  G  Y  K  G  V  V  G  V  G  W  I  V  M  K  *  *  K  W  Q  L  Y  Q  W  E  M  G  M  R  Y  G  E  L  M  E  Q  W  R  *  Y  S  F  C  M  V  D  T  M  *  L  Q  K  W  H  S  M  W  E  *  I  K  L  C  S  V  C  I  G  I  F  L  L  Y  L  F  L  H  Q  L  P  M  F  A  K   : R  G  R  G  F  L  *  I  G  G  F  C  Y  P  S  S  F  *  D  *  L   : V  F  L  G  T  N  F  C  F  L  L  V  L  V  T  Q  I  Q  H  M  L  Q  P  C  N  L  Q  Y  Q  S  S  H  S  Y  L  Q  Y  *  W   : V  Q  K  Q  *  S  F  L  L  W  K  V  K  Q  R  L  E  V  R  L  F  V  F  L  G  Q  S  *  W  P  S  S  V  D  L  W  C  L  E  T  E  A  Q  N  S  Y  T  V  I  *  V  L  R  V  S  Q  S  L  L  D  G  *  C  Q  V  S  W  N  W  V  L  M  I  G  T  S  V  F  Y  A  *  *  E  T  V  C  A  W  Q  H  T  *  L  F  R :   L  Q  F  W  Q  N  T  L  Q  V  Y  Q  *  R  H  I  H  T  F  L  V  A  F  *  W  *  Q  Q  P  S  L  *  P  M  S  Q  P  T  G  T  *  H  N  L  K  L  L  L  C  A  M  L :   E  L  L  H  L  P  *  T  T  E  C  *  H  G  A  I  R  F  L  A  L  L  W  L  R  Y  T  I  H  F  N  L  L  R  L  H  F  Y  Q  E  F  S  L  G  A  L  F  I  *  E   : A  Y  L  E  D  F  S  L  Y  L  G  F  T  W  *  L  G  H  L  T  D  K  G  K  Q  P  L  V  S  I  L  M  L  L  D  R  R  N  L  Q  L  H  I  N  *  D  T  F  F  Q  F  L  L  P  Q  Y  Q  R  S  L  I  R  *  C  C  G  Y  S  Y  *  S  D  N  F  I  K  T  F  F  L  Y  *  L  G  G  I  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122865" stop="122624"/>
                    <exon start="121392" stop="121330"/>
                    <exon start="121215" stop="121099"/>
                    <exon start="119987" stop="119705"/>
                    <exon start="118535" stop="118380"/>
                    <exon start="117859" stop="117708"/>
                    <exon start="117464" stop="117281"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1194</number_coding_nucleotides>
                  <number_encoded_amino_acids>398</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGGGGGVDCDEMIKMAAVSVGNGNEVWRAHGTMAMIQLLYGGYHVITKVALNVGMNQIVFCLYRDLLALSILAPVAYVREKRSRIPLNRRLLLSFFFLGLTGIFGNQLLFLIGLGYTNPTYAAAVQPAIPVFTFIFAVLMGTETVKLFTVEGQAKVGGTIVCVSGAILMAIFRGPVVFGDRSSEFIHSDISAKGQPEPTGWLMSSFVELGFDDWHLGVLCLIGNCMCMAAYLAIQAPVLAKYPASISVTAYSYLFGCLLMVATAFFVTDESTDWNLTQSEAFAVCYAGIVASALNYGMLTWCNKILGPSMVALYNPLQPAASAFLSRVFLGSPIYLGSIFGGLLIISGLYLVTWASYRQRQAAIGIDPHASRSSEPPITYQLGHLFSVPPSSIPKIID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="128260" PGL_stop="124132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128260" e_stop="128105"/>
            <exon e_start="127993" e_stop="127925"/>
            <exon e_start="127623" e_stop="127594"/>
            <exon e_start="126540" e_stop="126508"/>
            <exon e_start="125700" e_stop="125630"/>
            <exon e_start="124880" e_stop="124799"/>
            <exon e_start="124685" e_stop="124587"/>
            <exon e_start="124453" e_stop="124132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.881" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.894" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128260" e_stop="128105" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.948">
            <gDNA_intron_boundary i_start="128104" i_stop="127994" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127993" e_stop="127925" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.794">
            <gDNA_intron_boundary i_start="127924" i_stop="127624" i_length="301"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="127623" e_stop="127594" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.983">
            <gDNA_intron_boundary i_start="127593" i_stop="126541" i_length="1053"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126540" e_stop="126508" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="126507" i_stop="125701" i_length="807"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="125700" e_stop="125630" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.965">
            <gDNA_intron_boundary i_start="125629" i_stop="124881" i_length="749"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124880" e_stop="124799" e_length="82"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.881">
            <gDNA_intron_boundary i_start="124798" i_stop="124686" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="124685" e_stop="124587" e_length="99"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.894">
            <gDNA_intron_boundary i_start="124586" i_stop="124454" i_length="133"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="124453" e_stop="124132" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128260" stop="128105"/>
              <exon start="127993" stop="127925"/>
              <exon start="127623" stop="127594"/>
              <exon start="126540" stop="126508"/>
              <exon start="125700" stop="125630"/>
              <exon start="124880" stop="124799"/>
              <exon start="124685" stop="124587"/>
              <exon start="124453" stop="124181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128259" stop="128105"/>
              <exon start="127993" stop="127925"/>
              <exon start="127623" stop="127594"/>
              <exon start="126540" stop="126508"/>
              <exon start="125700" stop="125630"/>
              <exon start="124880" stop="124799"/>
              <exon start="124685" stop="124587"/>
              <exon start="124453" stop="124348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128259" stop="128105"/>
              <exon start="127993" stop="127925"/>
              <exon start="127623" stop="127594"/>
              <exon start="126540" stop="126508"/>
              <exon start="125700" stop="125630"/>
              <exon start="124880" stop="124799"/>
              <exon start="124685" stop="124610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128192" stop="128105"/>
              <exon start="127993" stop="127925"/>
              <exon start="127623" stop="127594"/>
              <exon start="126540" stop="126508"/>
              <exon start="125700" stop="125630"/>
              <exon start="124880" stop="124799"/>
              <exon start="124685" stop="124587"/>
              <exon start="124453" stop="124132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTTTTCAAAAAATAACCTAATTTTTTCAATCTCCCGCCATTGCTGAAGAAATGGAGAAAACGAAGGAAGAAATTGCAGGAACAAGGCAGACGAATTTGAAAACTGCATTTGAGCTTGGAATTCACTCTTTGTTAACTTCATGTTCTAAAGAG : GGATTTTGTAAAGCTTTCCCTAATTTTGCTCCAGCAGAAGTTGAACGCCTTCATCGGTTGTTCATTCAG : GTGATTACTTCTTTGCATGAGGATATAGAG : GATGAATTTGAGTCTTTATGTGTGGAGACACAG : GCAGGATCAACTCTCAACATGGTGGAGCAGCTTGTGGAAGAACAAAACTTGGACCCTTTGTTTCCAGAGAA : AAGCAATGTTGAAGAAGTCAGGCACTTCCTATCAGAAGCAAAACAGAATGAGATCAACTACTTGACGACTATGTTGGAGACG : GCAGAAGAACAGAAACGCTCCATCACTTCTCGTCTTGAAACCCTGAAGAAACAAAGACATGATTTCTCTGATGCTGCTGCTACAGACATTGTCAATAAG : ATACGAACTGGGAATCAGAAGTACAATACGAACAACAATATTGGCTTCCATAATTGATACTGGCCTCGTCTGATGCATCCTATCCGCCCTTAGTCCTGCGTCTACTCGAGAAGATGGATTAAACTAGAGACTATCAGAACTTCCATTTCAATGTGCCTGTGAAATCTAAAGTAAATTAGTTGCATTTGCTTTCAATTTCAAGCAAGTAAACAAGGTTGTTTATTTCTTGTTCACTTAAAATGCTTGTATATGACATTTGTATGTCATTAATTAAAGCACTAGAATAAGTGAAAGGACTACTAGTTTCATCTCTTTTATACAT</gDNA_template>
            <first_frame> N  L  F  Q  K  I  T  *  F  F  Q  S  P  A  I  A  E  E  M  E  K  T  K  E  E  I  A  G  T  R  Q  T  N  L  K  T  A  F  E  L  G  I  H  S  L  L  T  S  C  S  K  E  :  G  F  C  K  A  F  P  N  F  A  P  A  E  V  E  R  L  H  R  L  F  I  Q  :  V  I  T  S  L  H  E  D  I  E  :  D  E  F  E  S  L  C  V  E  T  Q  :  A  G  S  T  L  N  M  V  E  Q  L  V  E  E  Q  N  L  D  P  L  F  P  E  K :   S  N  V  E  E  V  R  H  F  L  S  E  A  K  Q  N  E  I  N  Y  L  T  T  M  L  E  T  :  A  E  E  Q  K  R  S  I  T  S  R  L  E  T  L  K  K  Q  R  H  D  F  S  D  A  A  A  T  D  I  V  N  K  :  I  R  T  G  N  Q  K  Y  N  T  N  N  N  I  G  F  H  N  *  Y  W  P  R  L  M  H  P  I  R  P  *  S  C  V  Y  S  R  R  W  I  K  L  E  T  I  R  T  S  I  S  M  C  L  *  N  L  K  *  I  S  C  I  C  F  Q  F  Q  A  S  K  Q  G  C  L  F  L  V  H  L  K  C  L  Y  M  T  F  V  C  H  *  L  K  H  *  N  K  *  K  D  Y  *  F  H  L  F  Y  T  </first_frame>
            <second_frame>  I  F  F  K  K  *  P  N  F  F  N  L  P  P  L  L  K  K  W  R  K  R  R  K  K  L  Q  E  Q  G  R  R  I  *  K  L  H  L  S  L  E  F  T  L  C  *  L  H  V  L  K  R :   D  F  V  K  L  S  L  I  L  L  Q  Q  K  L  N  A  F  I  G  C  S  F  R :   *  L  L  L  C  M  R  I  *  R :   M  N  L  S  L  Y  V  W  R  H  R :   Q  D  Q  L  S  T  W  W  S  S  L  W  K  N  K  T  W  T  L  C  F  Q  R   : K  A  M  L  K  K  S  G  T  S  Y  Q  K  Q  N  R  M  R  S  T  T  *  R  L  C  W  R  R :   Q  K  N  R  N  A  P  S  L  L  V  L  K  P  *  R  N  K  D  M  I  S  L  M  L  L  L  Q  T  L  S  I  R :   Y  E  L  G  I  R  S  T  I  R  T  T  I  L  A  S  I  I  D  T  G  L  V  *  C  I  L  S  A  L  S  P  A  S  T  R  E  D  G  L  N  *  R  L  S  E  L  P  F  Q  C  A  C  E  I  *  S  K  L  V  A  F  A  F  N  F  K  Q  V  N  K  V  V  Y  F  L  F  T  *  N  A  C  I  *  H  L  Y  V  I  N  *  S  T  R  I  S  E  R  T  T  S  F  I  S  F  I  H </second_frame>
            <third_frame>   S  F  S  K  N  N  L  I  F  S  I  S  R  H  C  *  R  N  G  E  N  E  G  R  N  C  R  N  K  A  D  E  F  E  N  C  I  *  A  W  N  S  L  F  V  N  F  M  F  *  R   : G  I  L  *  S  F  P  *  F  C  S  S  R  S  *  T  P  S  S  V  V  H  S   : G  D  Y  F  F  A  *  G  Y  R   : G  *  I  *  V  F  M  C  G  D  T   : G  R  I  N  S  Q  H  G  G  A  A  C  G  R  T  K  L  G  P  F  V  S  R  E  :  K  Q  C  *  R  S  Q  A  L  P  I  R  S  K  T  E  *  D  Q  L  L  D  D  Y  V  G  D   : G  R  R  T  E  T  L  H  H  F  S  S  *  N  P  E  E  T  K  T  *  F  L  *  C  C  C  Y  R  H  C  Q  *   : D  T  N  W  E  S  E  V  Q  Y  E  Q  Q  Y  W  L  P  *  L  I  L  A  S  S  D  A  S  Y  P  P  L  V  L  R  L  L  E  K  M  D  *  T  R  D  Y  Q  N  F  H  F  N  V  P  V  K  S  K  V  N  *  L  H  L  L  S  I  S  S  K  *  T  R  L  F  I  S  C  S  L  K  M  L  V  Y  D  I  C  M  S  L  I  K  A  L  E  *  V  K  G  L  L  V  S  S  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128236" stop="128105"/>
                    <exon start="127993" stop="127925"/>
                    <exon start="127623" stop="127594"/>
                    <exon start="126540" stop="126508"/>
                    <exon start="125700" stop="125630"/>
                    <exon start="124880" stop="124799"/>
                    <exon start="124685" stop="124587"/>
                    <exon start="124453" stop="124397"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFQSPAIAEEMEKTKEEIAGTRQTNLKTAFELGIHSLLTSCSKEGFCKAFPNFAPAEVERLHRLFIQVITSLHEDIEDEFESLCVETQAGSTLNMVEQLVEEQNLDPLFPEKSNVEEVRHFLSEAKQNEINYLTTMLETAEEQKRSITSRLETLKKQRHDFSDAAATDIVNKIRTGNQKYNTNNNIGFHN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="143186" PGL_stop="145304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143186" e_stop="143317"/>
            <exon e_start="144230" e_stop="144563"/>
            <exon e_start="144637" e_stop="144853"/>
            <exon e_start="144930" e_stop="145304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.318" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="143186" e_stop="143317" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="143318" i_stop="144229" i_length="912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="144230" e_stop="144563" e_length="334"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.933">
            <gDNA_intron_boundary i_start="144564" i_stop="144636" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144637" e_stop="144853" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.318" acc_prob="0.000">
            <gDNA_intron_boundary i_start="144854" i_stop="144929" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="144930" e_stop="145304" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143186" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143216" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="145093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143224" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="145173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143273" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="144971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143279" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="145015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143280" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143280" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143282" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143286" stop="143317"/>
              <exon start="144230" stop="144563"/>
              <exon start="144637" stop="144773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144454" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="145281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144454" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="145242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144486" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="145093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144489" stop="144563"/>
              <exon start="144637" stop="144853"/>
              <exon start="144930" stop="145093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144672" stop="144853"/>
              <exon start="144930" stop="145241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144798" stop="144853"/>
              <exon start="144930" stop="145304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAAAAAAATGTTAGACTGACATTTTTTGTCTTCTATTTTTAGTAGTGTAGTAGTGTTTCAATATCCAATTTTCAACAAGCAAATCAGTGTAGAAATGGCAGTATCCCTCCCAAATCTGTTTCCAAAAG : GTGATGCGTATGGAACAAAGTATTTCGAGATTAAAACAAAGCCAAGTCAATTGAAGCTTTCGTTTAGCTATAGAGCAAGAGCAAAGGCAGCTCTTAATCCTCGTTCGAGTTCTGTTGAAATCCCTCGGCAGTGGTACAATCTAGTTGCAGACCTTCCAATCAAACCACCTCCACCGTTGCATCCCAAGACGTTTCAGCCTATCAAACCGGAGGACTTATCTCCGCTTTTCTGTGATGAGTTGATTAAGCAGGAGGCAAGCATCGACCAGTTTATTGATATACCGGAAGAAGTTTTAGACGTCTACAGTCTTTGGCGCCCAACCCCTTTGATTAG : AGCAAAGAGGTTGGAAAAACTGCTTGATACACCCGCACGAATATATTACAAGTATGAAGGTGGTAGCCCCGCGGGGTCGCACAAGCCCAACTCTGCTGTTCCTCAGGCCTGGTACAATAAAATGGGGAATGTTAAAAATGTGGTTACGGAGACCGGGGCAGGTCAATGGGGGAGCGCGTTGTCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAG : GTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTT</gDNA_template>
            <first_frame> K  R  K  K  C  *  T  D  I  F  C  L  L  F  L  V  V  *  *  C  F  N  I  Q  F  S  T  S  K  S  V  *  K  W  Q  Y  P  S  Q  I  C  F  Q  K  :  V  M  R  M  E  Q  S  I  S  R  L  K  Q  S  Q  V  N  *  S  F  R  L  A  I  E  Q  E  Q  R  Q  L  L  I  L  V  R  V  L  L  K  S  L  G  S  G  T  I  *  L  Q  T  F  Q  S  N  H  L  H  R  C  I  P  R  R  F  S  L  S  N  R  R  T  Y  L  R  F  S  V  M  S  *  L  S  R  R  Q  A  S  T  S  L  L  I  Y  R  K  K  F  *  T  S  T  V  F  G  A  Q  P  L  *  L   : E  Q  R  G  W  K  N  C  L  I  H  P  H  E  Y  I  T  S  M  K  V  V  A  P  R  G  R  T  S  P  T  L  L  F  L  R  P  G  T  I  K  W  G  M  L  K  M  W  L  R  R  P  G  Q  V  N  G  G  A  R  C  R  L  L  A  A  Y  L  V  S  I  V  R :   Y  G  K  F  E  L  R  L  I  R  N  L  I  V  R  *  *  C  K  L  G  V  R  R  C  I  L  L  L  P  T  L  Q  R  P  V  G  L  F  Y  K  W  I  L  Q  V  Q  E  V  *  E  *  L  F  Q  R  L  W  R  L  Q  R  R  T  L  T  P  S  I  V  W  E  V  F  *  I  M  F  C  Y  I  R  P  L  S  V  R  S  V  *  N  R  W  R  I  S  E  R  L  Q  M  *  S  S  V  A  R  E  V  D  L  I  L  Q  D  L  L  S  R  L  S  G  R  S   </first_frame>
            <second_frame>  K  E  K  N  V  R  L  T  F  F  V  F  Y  F  *  *  C  S  S  V  S  I  S  N  F  Q  Q  A  N  Q  C  R  N  G  S  I  P  P  K  S  V  S  K  R :   *  C  V  W  N  K  V  F  R  D  *  N  K  A  K  S  I  E  A  F  V  *  L  *  S  K  S  K  G  S  S  *  S  S  F  E  F  C  *  N  P  S  A  V  V  Q  S  S  C  R  P  S  N  Q  T  T  S  T  V  A  S  Q  D  V  S  A  Y  Q  T  G  G  L  I  S  A  F  L  *  *  V  D  *  A  G  G  K  H  R  P  V  Y  *  Y  T  G  R  S  F  R  R  L  Q  S  L  A  P  N  P  F  D  *  :  S  K  E  V  G  K  T  A  *  Y  T  R  T  N  I  L  Q  V  *  R  W  *  P  R  G  V  A  Q  A  Q  L  C  C  S  S  G  L  V  Q  *  N  G  E  C  *  K  C  G  Y  G  D  R  G  R  S  M  G  E  R  V  V  V  C  L  Q  L  I  W  S  Q  L  *   : G  M  A  S  S  S  F  V  *  S  E  T  L  S  *  D  D  D  A  N  L  G  C  E  G  A  S  F  S  F  R  P  Y  R  G  R  S  G  Y  S  T  N  G  S  F  K  S  R  K  F  R  N  S  Y  F  R  G  C  G  G  C  S  E  E  R  *  H  Q  V  L  F  G  K  C  S  E  S  C  F  V  T  S  D  R  Y  R  *  G  V  Y  K  T  D  G  G  F  R  R  D  S  R  C  D  H  R  L  H  G  R  W  I  *  F  C  R  T  C  F  P  V  Y  P  G  E  A  </second_frame>
            <third_frame>   K  K  K  M  L  D  *  H  F  L  S  S  I  F  S  S  V  V  V  F  Q  Y  P  I  F  N  K  Q  I  S  V  E  M  A  V  S  L  P  N  L  F  P  K   : G  D  A  Y  G  T  K  Y  F  E  I  K  T  K  P  S  Q  L  K  L  S  F  S  Y  R  A  R  A  K  A  A  L  N  P  R  S  S  S  V  E  I  P  R  Q  W  Y  N  L  V  A  D  L  P  I  K  P  P  P  P  L  H  P  K  T  F  Q  P  I  K  P  E  D  L  S  P  L  F  C  D  E  L  I  K  Q  E  A  S  I  D  Q  F  I  D  I  P  E  E  V  L  D  V  Y  S  L  W  R  P  T  P  L  I  R :   A  K  R  L  E  K  L  L  D  T  P  A  R  I  Y  Y  K  Y  E  G  G  S  P  A  G  S  H  K  P  N  S  A  V  P  Q  A  W  Y  N  K  M  G  N  V  K  N  V  V  T  E  T  G  A  G  Q  W  G  S  A  L  S  F  A  C  S  L  F  G  L  N  C  E  :  V  W  Q  V  R  A  S  F  D  Q  K  P  Y  R  K  M  M  M  Q  T  W  G  A  K  V  H  P  S  P  S  D  L  T  E  A  G  R  A  I  L  Q  M  D  P  S  S  P  G  S  L  G  I  A  I  S  E  A  V  E  V  A  A  K  N  A  D  T  K  Y  C  L  G  S  V  L  N  H  V  L  L  H  Q  T  V  I  G  E  E  C  I  K  Q  M  E  D  F  G  E  T  P  D  V  I  I  G  C  T  G  G  G  S  N  F  A  G  L  A  F  P  F  I  R  E  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="143209" stop="143317"/>
                    <exon start="144230" stop="144563"/>
                    <exon start="144637" stop="144853"/>
                    <exon start="144930" stop="145304"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFLSSIFSSVVVFQYPIFNKQISVEMAVSLPNLFPKGDAYGTKYFEIKTKPSQLKLSFSYRARAKAALNPRSSSVEIPRQWYNLVADLPIKPPPPLHPKTFQPIKPEDLSPLFCDELIKQEASIDQFIDIPEEVLDVYSLWRPTPLIRAKRLEKLLDTPARIYYKYEGGSPAGSHKPNSAVPQAWYNKMGNVKNVVTETGAGQWGSALSFACSLFGLNCEVWQVRASFDQKPYRKMMMQTWGAKVHPSPSDLTEAGRAILQMDPSSPGSLGIAISEAVEVAAKNADTKYCLGSVLNHVLLHQTVIGEECIKQMEDFGETPDVIIGCTGGGSNFAGLAFPFIREKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="144818" e_stop="145304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="144818" e_stop="145304" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144818" stop="145304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144818" stop="145303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTTTGCTTGCAGCTTATTTGGTCTCAATTGTGAGGTAAATGTGTCTGTAGTTTACGTGTTCATTTGCGATGAGGGAGTTCATCCGCCCCGATCTAGAATTTTCAGTGCAGGTATGGCAAGTTCGAGCTTCGTTTGATCAGAAACCTTATCGTAAGATGATGATGCAAACTTGGGGTGCGAAGGTGCATCCTTCTCCTTCCGACCTTACAGAGGCCGGTCGGGCTATTCTACAAATGGATCCTTCAAGTCCAGGAAGTTTAGGAATAGCTATTTCAGAGGCTGTGGAGGTTGCAGCGAAGAACGCTGACACCAAGTATTGTTTGGGAAGTGTTCTGAATCATGTTTTGTTACATCAGACCGTTATCGGTGAGGAGTGTATAAAACAGATGGAGGATTTCGGAGAGACTCCAGATGTGATCATCGGTTGCACGGGAGGTGGATCTAATTTTGCAGGACTTGCTTTCCCGTTTATCCGGGAGAAGCTT</gDNA_template>
            <first_frame> S  F  A  C  S  L  F  G  L  N  C  E  V  N  V  S  V  V  Y  V  F  I  C  D  E  G  V  H  P  P  R  S  R  I  F  S  A  G  M  A  S  S  S  F  V  *  S  E  T  L  S  *  D  D  D  A  N  L  G  C  E  G  A  S  F  S  F  R  P  Y  R  G  R  S  G  Y  S  T  N  G  S  F  K  S  R  K  F  R  N  S  Y  F  R  G  C  G  G  C  S  E  E  R  *  H  Q  V  L  F  G  K  C  S  E  S  C  F  V  T  S  D  R  Y  R  *  G  V  Y  K  T  D  G  G  F  R  R  D  S  R  C  D  H  R  L  H  G  R  W  I  *  F  C  R  T  C  F  P  V  Y  P  G  E  A  </first_frame>
            <second_frame>  R  L  L  A  A  Y  L  V  S  I  V  R  *  M  C  L  *  F  T  C  S  F  A  M  R  E  F  I  R  P  D  L  E  F  S  V  Q  V  W  Q  V  R  A  S  F  D  Q  K  P  Y  R  K  M  M  M  Q  T  W  G  A  K  V  H  P  S  P  S  D  L  T  E  A  G  R  A  I  L  Q  M  D  P  S  S  P  G  S  L  G  I  A  I  S  E  A  V  E  V  A  A  K  N  A  D  T  K  Y  C  L  G  S  V  L  N  H  V  L  L  H  Q  T  V  I  G  E  E  C  I  K  Q  M  E  D  F  G  E  T  P  D  V  I  I  G  C  T  G  G  G  S  N  F  A  G  L  A  F  P  F  I  R  E  K  L </second_frame>
            <third_frame>   V  C  L  Q  L  I  W  S  Q  L  *  G  K  C  V  C  S  L  R  V  H  L  R  *  G  S  S  S  A  P  I  *  N  F  Q  C  R  Y  G  K  F  E  L  R  L  I  R  N  L  I  V  R  *  *  C  K  L  G  V  R  R  C  I  L  L  L  P  T  L  Q  R  P  V  G  L  F  Y  K  W  I  L  Q  V  Q  E  V  *  E  *  L  F  Q  R  L  W  R  L  Q  R  R  T  L  T  P  S  I  V  W  E  V  F  *  I  M  F  C  Y  I  R  P  L  S  V  R  S  V  *  N  R  W  R  I  S  E  R  L  Q  M  *  S  S  V  A  R  E  V  D  L  I  L  Q  D  L  L  S  R  L  S  G  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0210G12.1" strand="+"/>
                <serials PGL_serial="27" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="144870" stop="145304"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTCSFAMREFIRPDLEFSVQVWQVRASFDQKPYRKMMMQTWGAKVHPSPSDLTEAGRAILQMDPSSPGSLGIAISEAVEVAAKNADTKYCLGSVLNHVLLHQTVIGEECIKQMEDFGETPDVIIGCTGGGSNFAGLAFPFIREKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 699 chains have been computed
$ 
$ memory statistics:
$ 2166824 bytes spliced alignments in total
$ 345 spliced alignments have been stored
$ 6280 bytes was the average size of a spliced alignment
$ 49720 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1841 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 761 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:25:45
-->
