<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 09:05:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336755" ref_strand="+" ref_description="SGN-U336755        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgtattcatttttttttttgtatatctgtattcgtacgatgctctgataattgcagacatttcaatgtggatgcaatttcaagggtttatctgttgaatcatatcgattttgaattttaaacgactgatatcaattttgctgcttgaattttcagtttttgactgtatttttgatggtttatggcaggtttggcttgtatttggtaattagattcaaaaagagaaaatgtctggacgaatggctggaaagtctgtagcaaaagcagttgggcaatatcaatatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="376" stop="2842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="676" g_stop="909" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="910" i_stop="2487" i_length="1578">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2488" g_stop="2542" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="288" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-U336755" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="676" e_stop="909"/>
          <exon e_start="2488" e_stop="2542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTCATTTTTTTTTTTTGTATATCTGTATTCGTACGATTCTCTGATAATTGCAGACATTTCAATGTGGATGCAATTTCAAGGGTTTATCTGTTGAATCATATCGATTTTGAATTTTAAACGACTGATATCAATTTTGCTGCTTGAATTTTCAGTTTTTGACTGTATTTTTGATGGTTTATGGCAGGTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTGGTAAGTAGTTATAGTATTACATCTATGTGTTTTAACGATGTTCACTGTCATAATAACTTTTTTTTGCCTGCAGCTTACATGTTACTATGATCTATATTAGGTGAATGTTTGTTGAAAAATTTGGGCTTTAGTAGTGTTAGGGTTTTAGTTTTTTGAAACCTGCAATATAACATCGCAAGCTTCTCACCATCTCTACTCCATCCGCATCGTCTCTTCACCCTCTCTTTAAGTTATTCTTCATTTAATCCAGGATTAAATCCTACGTTCAATTCTGTCTGCATTAAAAATTTTGTTTTGTGCATCTGCGTTTGTACACATCCAAAAAGATGGGTTCAAGGGCTACAATTTTGAGTTCTCGAAAAGAATATTTAGAAGTGAATGAAATATTATAATGCAGAACCTATCATGATTTAGAAATTTAAAAGTATGCAAATTTAGTACTAAATTTTTTGCTTTAATGTAGAATCTACAACTGTTTTCGGGTCTTTATACCGGTCTTGCGTCCTCGTTTAGACTACATTTTACATTAATATGCACATAACATTGGGTCCTTCATGAGGTTGTTTTGTTACAAGAAATTCTTTTACCCTTATCTCTGCTAGAAGAACAGAGAACTCAAATACAAGTATTTCAAGTTGTTGAGGCACCAGGGAAAACCTTCTGCGCTGGGTGTTACGAATGACTTGGATTACGAGTGACAAATGTCATGATTATATGTGTGATATTTTAATGTAAAATAAAATGCGATGATTTGTATATATGCATGTATTGCAACATGGAATGTCATAGAAAAAATTGGAATCATCTATTTCAACAAGTCCTAATACTCCATTTTTGATAAGTAAGATAATGATAGCAATGTGCAAAAGAGGTATAGAGATGTAGTTCTTAGCTGTGCCTATAGTTAAATTAGACAGCCTGTTAAGATATCCACTTCTTGTACTTTTTTGAGATGAAATCACATGGCTACTAATTACTAGCAATTGTATTTTAACAATACGCAATCTCAAATTTTCCTAAAAAGCACCATTGATATCTCTCTCTGAAACAAAGATCCACAAAATAGAAGCAACGATTGCAATCCAAATCCCTAACCTCTTCTTTACAGCCAGTACTGTTAGAGTTCTTTAACAGTATTGGTTATACATTCATGTAAAACATATATCTAGTCACTACAGTGTGAAACAATCAGTAGGGTGAAGGTGAGAGCAACTTTAAAACTAGAGCAAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTTCTGATCCTAGTAATTTAAGTATGGAGGTCTTGTGCGCTCTTTACTTTCTCTGGCAACAATATGTCATTTGCAGTTCAGAAATATGTTGTAAATTTGATGTGGTTGTTTCAGAGGGACTAATCTTGTATTTTCGAACTCTTTATTTTTTTCATTTGCTATATGATTGTGGCATCCTCTTACAATCATGTAATAACCTTGGAACTTTCTCTGGATAACCTCTGAACATCTCATTTTAGTATGCCTTGATAGACTTACATGTCTAAAATTCGAATTTGTGAAAGAAAAATATTATATGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATG</genome_strand>
        <mrna_strand>CGTATTCA-TTTTTTTTTTTGTATATCTGTATTCGTACGATGCTCTGATAATTGCAGACATTTCAATGTGGATGCAATTTCAAGGGTTTATCTGTTGAATCATATCGATTTTGAATTTTAAACGACTGATATCAATTTTGCTGCTTGAATTTTCAGTTTTTGACTGTATTTTTGATGGTTTATGGCAGGTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8547" stop="9432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8847" g_stop="9132" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8847" e_stop="9132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTATCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9871" stop="8839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9571" g_stop="9139" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9571" e_stop="9139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCATGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTATACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGCACTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTAATTTTCCCCATCCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8906" stop="10059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9206" g_stop="9759" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9206" e_stop="9759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATTAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGTGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTATAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACATGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAATAGAGGCGCCACATATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10946" stop="8910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10646" g_stop="9210" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10646" e_stop="9210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAAAAGATTACATGTGATAACAGCATCTGATGTCTCCGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCACTTGTCTGCCCGTTGCCCCTACCATGTGGTGCTGTAGTGGCTCTAGTTTTCCCGTCACCCTGGCCGTTTTGGTGACCACCATTACCTCGGACACCACGTCCCCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAGATATTAGGGGTCTATAACTCTGGT-TTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCTCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCCGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCAGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGATCTCAACCCCTTCACAAAGCGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATATGTGGCGCCTCTATTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCATGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTATACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGCACTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTAATTTTCCCCAT-CCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACT-TGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11157" stop="10227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10857" g_stop="10527" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10857" e_stop="10527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATTAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACGCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331099" ref_strand="+" ref_description="SGN-U331099        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: Zinc(evalue: 1e-28, score=129)">
      <seq>agaagcatgtgtctattgaacgagttaggcaagcagtgagatacatcaggcaatctcctgctaggtcgaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattacggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagccttgtttaatgagtatacaaaccccatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25746" stop="24516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25454" g_stop="24784" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-U331099" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25454" e_stop="24784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAATGTGTCTATTGAACGAGATAGGCAAGCCGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAAATTTTCAAGAATGTTGTGAAGATG-AAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATG-TTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGAAGC--ATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTCGAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTACGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCCTTGTTTAATGAGTATACAAACCCCATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34475" stop="35787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34775" g_stop="35487" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34775" e_stop="35487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACTAACAAAGCTCCTTATTTCTGACACATTAGTAGGTGTTACCCAATTATTCACTGTCTCAATTTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATACCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAGATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTTATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAATAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCTAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAGCAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCAGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37089" stop="35083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36789" g_stop="36617" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36616" i_stop="35873" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.002" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35872" g_stop="35397" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="651" r_length="478" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36789" e_stop="36617"/>
          <exon e_start="35872" e_stop="35397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCATGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGGGTGAAGCCAGATGACTTCACCATGGCATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACCCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGAAACTGTCCAAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGCCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTAACGGACAAATGGGAACTACTGCAGCGCAACATGGTAGGGGCAACGGGCAAGCAGGCGATAGGGCCCATTGTTACGCTTTCCCTGGGTGGTCGGAAGCGGAGACATCAGATGTTGTTATCACAGGTAATCTTTTTGTTTGTGATTGTATGGCTTCTGTATTATTTGACCCTGGCTCCATATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTATAACATTTATGGGGAGAAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTGATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTTCGTAACATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGATTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCAATAGTCCGCGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGG-ACTCGCCCTATTTCTATACCCCCTTATAGGATGGCT-CCGCTGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGCTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTAGGGTGCTCCGGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35465" stop="36396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35765" g_stop="36095" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35765" e_stop="36095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATCACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCCCCATAAATGTTATAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATATGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACAAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37716" stop="36563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37416" g_stop="36863" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37416" e_stop="36863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGATACCTCCAGTGTTTTCTGCACCAGCAACTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGAATGAACTTTTCAGTAAGTTCTTGAAATTGACACCTCCAGTATTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGAATGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343879" ref_strand="+" ref_description="SGN-U343879        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr1:4642343-4644419 REVERSE | Aliases: F13B4.6, F13B4_6(evalue: 5e-23, score=105) genbank/nr: Leucine(evalue: 2e-25, score=119)">
      <seq>ttcgccgtcgccggcagtcttcgctgagagcaagacacctctttgcacaaattatgcactattgctagtaaggtgggaaaaaaatcaaatcagaaaaagaaaatcaaacatgaatcaagatggagtaagcgttgcggttgagggggacatagaagatagaattagtgtcctaccaagaaatgttattgattgtatccttgagctcttgcctattaaagaagctgcaaaaacttgtacattgtccaaaagctggagatacatttggagcgagcttccaaaactggtgctgtattacgagttttgtgatgagttaatagatgagtctgaatccaaattcagagaagtagtagacgggattatgttactgcatatgggcaagattgtgcagtttgatcttgacgttagagtagaagatttagcttcatatacagctattgataggtgggttctttatgtcaccagaaatagtgtcaagaagctacaccttagaatttctaatattgatgatcgtagctatgcactgcctccttgtgtatttcactgttcaaccctgacacagttgaaacttgctagatgttcctttaaaccacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47991" stop="44285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47691" g_stop="47664" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47663" i_stop="45288" i_length="2376">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45287" g_stop="45197" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="119" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45196" i_stop="45061" i_length="136">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45060" g_stop="44585" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="595" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-U343879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47691" e_stop="47664"/>
          <exon e_start="45287" e_stop="45197"/>
          <exon e_start="45060" e_stop="44585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGTCGCCGGCAGTCTTCGCTGAGGTTTGATCGGTTCTCTTCTCTTTTATTTCATACAGAAGAACAAATAAACCAAATCAAACTAAAATTTTGAGCTATTATTTATCACCGTTTTTTTAGCGGTACCTGAAATTCTTCACGAAGCCCTAAATTATGAAATGAATGAGTTTTTGTCGGTCTGGTAGAAATGGAATTGGCAACTAGAATAAGAAAATCTCATGCTTAGATTATTCATGTACAGAGAGCTTGTGATTTGAATTTTGATCTGTATGTAATTGTTGTTTGGTAGATATGGAATTTTGTAACTAGAATAAAATTGAATCCTATTTTTTTCTTTACAATGTGGTGTTAAAGCCAGCTTTCGCACAATTCAACTAATTGTACTGGATATGTTCGGCTTCCCACCAGCAACATTAGGTTTTTATCTACCAAGACTTGGATCGTTGGAAAGAAAGGCAGACCTAGTGTTTTTTGGATTTGAAAATCATTTTTCTAGAGAGCAAAATGTTTCCAAGTTTTGAAGTGTTTTGTTTTAGTAGAAGCAAGTGGTTTCTCCTACAGTGAAAGGCTTCACAGAGAAGAGGTTCTCTTATTTCTAATGAATCTATTATAAGTGAAGTTGTAATGTTATATTTGATTATGCTTTCATTAGTAGAATTCTTTGCGTTGTCTTCCTTATTTTAGTTTTAATTTAAAGAATTTTTGCTCTATCAAGTGTTTTTGTGAGTGACCTATATATTGTTACGTAGTGTGATTTGATGTTATCGTTTTGTTCCAATTTGTTGTATTCTTTTAAATTTCGAGCTTCAAAGCTTGAATATCCTTAACTAAATTCATGGCGTCGCCACTATCTTGGGTTGTTCGGTGGTTCAGGTTGTGTATGACAATTTCAGTCGAGGTCCTGATGTCGTTGCTCCTTTTCTGCCCTTTTGGAGGATAAAAATGTTTATTTTTTGGTTAACTGTGAAGAATTACCATTGACAGCCAAAAATTTACACCTATAGAGCACTTTGGGTAGAGGAGCCACCTTCCACGAAGGTACCCTTTCCTCTAAAGCCTCAAACATAGACAAATCTAGTTACAAAGTTTCTGAACCAAGTATCTACATTTACTAGCTTTCCTTCTATCCTTCGGGTAATCCACTCTTTCCAGTATCTTTTTCTTTATCTGTCTGATTGTAATCTCTGTATTTACTATTGTCCCTGTGAATAGTTTCCAATTTCTTGCTCTTCAAGTGTGATAGATTCTGGCTCCCCATATAGCTATAGCTATTTCCTTCTTATATTGCTTCCAGTCTCTTCCTCTTATCCATTTTAGGCATTCTGTCACTTCCGTTTTTTTTGTATTCAAATACCCGACCAAGTCTCAAGTGCTTCCTTCACTTTTGTTGTCCAGGTACATTCTGCAAATAAATGTACTTGAGTCTCCGGTTTGCTTTCTCCACATAGGCAACACTTTTCATCTTCTATTGGCATTTGCAGTTTGATTTTCGTCTCTTTCATTAGCAGTTAATCCCGATTTGCTAGCCATATAATAAACCTGTGTCTAGGCAGCATGAGAGAGTTCCATATCAAGTCTGCTACAGGTAGTTTCAACTGCCTACCCAGTAACTGGTTGTAACTACAACTCACATTATATGCTCCATAGGTCAATAGACAGTAGGTTCCATTAGTATACCACATTCCCATGGTTAATTTAATGGAGTTAAGCTTCCTCCAATACCAGCTGCTATCCTTAGAGGGTGTATGTGTCCAAAAATCTTGCTCGTCTTTCATATTTAGTCCATGCACCCACCTTATCCATAGTGTATCTGTGTTGCTAGCAATCTGCCATATCAACTTACCAACTGATGCAATATTCCATAATCTGCAGCTCCTGATGTTCAGTCCACCATTCTTCTTTGGCACACAAATTTTCTCCCACGATACGAGTGCTACCTTCCTCTTGATCTCTTATTTCCCAATATGCCATAGATAATCCCTACATTTTCTATCAACCTCTTTCAAAATACTTTCAAACAAGATGAAAACATTGCTCCAAAAGTTATAGAGCGAGTACATCATTTATGACCTGCAATCTGCCTGCATCTGACAATGTTTTTGAATATGCACTAGTAATCGTGTTGGTTATCTTGCCGATCAGTTGATGGCAATCGATCTTTGTTCATTTCTTTGATGATAATGGCAAGCCCAAGTATCTGATAGGGAAGATCACCAAGTGTAAATCCTGTCAGCTGCAATATTTGTTCCTTCATAACATCATCCACCCCAGCTACGAATACATTAGACTTGTCCAGATTTGCCACAAGGCCTTTCACCCTACTGAAATGGTTCAACACCTCTATCATCCTTCTTATAGACATCTACTATCAATGATCCCCTCTTTTCTTGTCACTGACAGAGCAAGACACCTCTTTGCACAAATTATGCACTATTGCTAGTAAGGTGGGAAAAAAATCAAATCAGAAAAAGAAAATCAAACATGAATCAAGGTACTTCCTCTTCTTTTTATTTTGTTGATTCTTCCTGGATTATAAGCTTGATGCCTTATTGAGATTTATCAACTTTTCTCTAACAGATTAAGGAAAATTTAACCCTTAATTAGATCATTTAAATAATTTTTCACAGATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATTGTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTGCTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGATTGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGAAGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCTAGATGTTCCTTTAAACCACCTGAT</genome_strand>
        <mrna_strand>TTCGCCGTCGCCGGCAGTCTTCGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGACACCTCTTTGCACAAATTATGCACTATTGCTAGTAAGGTGGGAAAAAAATCAAATCAGAAAAAGAAAATCAAACATGAATCAAG........................................................................................................................................ATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATTGTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTGCTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGATTGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGAAGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCTAGATGTTCCTTTAAACCACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="676" PGL_stop="2542"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="676" e_stop="909"/>
            <exon e_start="2488" e_stop="2542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="676" e_stop="909" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="910" i_stop="2487" i_length="1578"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2488" e_stop="2542" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="676" stop="909"/>
              <exon start="2488" stop="2542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTATTCATTTTTTTTTTTTGTATATCTGTATTCGTACGATTCTCTGATAATTGCAGACATTTCAATGTGGATGCAATTTCAAGGGTTTATCTGTTGAATCATATCGATTTTGAATTTTAAACGACTGATATCAATTTTGCTGCTTGAATTTTCAGTTTTTGACTGTATTTTTGATGGTTTATGGCAGGTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTG : GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATG</gDNA_template>
            <first_frame> R  I  H  F  F  F  L  Y  I  C  I  R  T  I  L  *  *  L  Q  T  F  Q  C  G  C  N  F  K  G  L  S  V  E  S  Y  R  F  *  I  L  N  D  *  Y  Q  F  C  C  L  N  F  Q  F  L  T  V  F  L  M  V  Y  G  R  F  G  L  Y  L  V  I  R  F  K  K  R  K  C  L  :  D  E  W  L  E  S  L  *  Q  K  Q  L  G  N  I  N  I  H  </first_frame>
            <second_frame>  V  F  I  F  F  F  C  I  S  V  F  V  R  F  S  D  N  C  R  H  F  N  V  D  A  I  S  R  V  Y  L  L  N  H  I  D  F  E  F  *  T  T  D  I  N  F  A  A  *  I  F  S  F  *  L  Y  F  *  W  F  M  A  G  L  A  C  I  W  *  L  D  S  K  R  E  N  V  W :   T  N  G  W  K  V  C  S  K  S  S  W  A  I  S  I  S  M </second_frame>
            <third_frame>   Y  S  F  F  F  F  V  Y  L  Y  S  Y  D  S  L  I  I  A  D  I  S  M  W  M  Q  F  Q  G  F  I  C  *  I  I  S  I  L  N  F  K  R  L  I  S  I  L  L  L  E  F  S  V  F  D  C  I  F  D  G  L  W  Q  V  W  L  V  F  G  N  *  I  Q  K  E  K  M  S   : G  R  M  A  G  K  S  V  A  K  A  V  G  Q  Y  Q  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0189E08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8847" PGL_stop="9132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8847" e_stop="9132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="8847" e_stop="9132" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8847" stop="9132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTATCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  Y  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  I  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8896" stop="9132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10857" PGL_stop="9139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10857" e_stop="9139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="10857" e_stop="9139" e_length="1719"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10857" stop="10527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10646" stop="9210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9571" stop="9139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATTAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACGCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAAAAGATTACATGTGATAACAGCATCTGATGTCTCCGCTTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCACTTGTCTGCCCGTTGCCCCTACCATGTGGTGCTGTAGTGGCTCTAGTTTTCCCGTCACCCTGGCCGTTTTGGTGACCACCATTACCTCGGACACCACGTCCCCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAGATATTAGGGGTCTATAACTCTGGTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCTCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCCGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCAGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGATCTCAACCCCTTCACAAAGCGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATATGTGGCGCCTCTATTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCATGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTATACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGCACTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTAATTTTCCCCATCCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  *  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  A  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  K  D  Y  M  *  *  Q  H  L  M  S  P  L  L  T  A  Q  G  K  R  N  N  G  P  Y  H  L  S  A  R  C  P  Y  H  V  V  L  *  W  L  *  F  S  R  H  P  G  R  F  G  D  H  H  Y  L  G  H  H  V  P  Q  N  N  G  L  C  H  D  H  L  Y  L  *  I  L  G  V  Y  N  S  G  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  L  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  P  N  P  V  L  *  S  K  N  H  *  T  H  L  P  S  E  T  F  L  M  S  M  P  W  *  S  H  R  A  S  L  L  P  P  L  S  R  S  L  P  L  L  E  R  I  L  Q  *  P  L  P  V  R  L  K  S  A  I  L  I  S  T  P  S  Q  S  G  E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  K  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  G  E  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  Y  V  A  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  I  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  Q  A  M  *  S  D  E  E  M  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  P  H  V  I  P  P  E  P  E  V  L  V  Q  K  T  L  E  A  L  G  L  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  V  I  P  H  S  V  L  V  N  F  P  H  P  P  L  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q  K  I  T  C  D  N  S  I  *  C  L  R  F  *  P  P  R  E  S  V  T  M  G  P  I  T  C  L  P  V  A  P  T  M  W  C  C  S  G  S  S  F  P  V  T  L  A  V  L  V  T  T  I  T  S  D  T  T  S  P  R  I  T  A  S  A  M  T  T  S  T  S  R  Y  *  G  S  I  T  L  V  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  S  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  R  V  R  T  I  K  L  T  S  L  P  K  P  F  *  C  R  C  H  G  E  V  I  G  L  H  S  F  H  L  Y  H  E  V  Y  H  F  L  K  G  F  C  S  S  R  Y  L  *  G  *  N  P  Q  F  *  S  Q  P  L  H  K  A  A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  N  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  M  W  R  L  Y  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  R  H  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  *  F  L  I  L  Y  L  L  I  F  P  I  L  P  F  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  L  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  R  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T  K  R  L  H  V  I  T  A  S  D  V  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  P  C  G  A  V  V  A  L  V  F  P  S  P  W  P  F  W  *  P  P  L  P  R  T  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  D  I  R  G  L  *  L  W  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  Q  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  C  G  A  S  I  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  T  G  H  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  Y  T  S  G  A  *  G  A  G  A  E  N  T  G  G  T  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  *  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10000" stop="9719"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDNAQNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVICGASIG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10726" stop="10466"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQDLYTFSTITDSRTGVETRIGMSSNSQCKLRPLANAEDTYENVEPGSNNTEAIQSQTKRLHVITASDVSASDRPGKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9759" stop="9565"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMMPKSYVAPLLVDTQHVTATTFWRSLETDKSQTPHQTILLYPSCVVARDSQPENHKHPPIQHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="9206" PGL_stop="9759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9206" e_stop="9759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="9206" e_stop="9759" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9206" stop="9759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATTAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGTGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTATAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACATGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAATAGAGGCGCCACATATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  R  G  G  W  G  K  L  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  C  T  S  T  S  G  S  G  G  I  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  Y  M  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  M  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  A  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  *  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  V  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  *  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  W  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  I  E  A  P  H  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  K  G  R  M  G  K  I  N  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  C  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  H  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  *  R  R  H  I  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9429" stop="9758"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAATVAPRMDASLEIGTFPRLTTWPVMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWFGVEFVTYQFQGNAKMWWRSHVECQPIEAPHMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="25454" PGL_stop="24784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25454" e_stop="24784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="25454" e_stop="24784" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25454" stop="24784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGCAAATGTGTCTATTGAACGAGATAGGCAAGCCGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAAATTTTCAAGAATGTTGTGAAGATGAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATGTTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> R  S  K  C  V  Y  *  T  R  *  A  S  R  E  I  H  Q  A  I  S  C  *  V  E  K  F  S  R  M  L  *  R  *  N  L  A  K  K  S  L  C  L  D  V  P  T  S  W  N  S  T  Y  M  M  L  S  R  V  I  E  Y  E  G  A  I  V  E  Y  T  D  R  D  I  D  L  A  L  Y  L  K  F  V  D  K  N  S  T  G  T  L  L  S  S  D  W  E  G  V  K  R  I  T  K  F  I  E  M  F  L  I  L  L  *  R  Y  L  V  H  D  M  L  Y  Q  I  F  I  F  L  K  F  L  K  L  V  F  T  *  I  N  C  Y  Q  M  K  N  K  F  W  L  R  *  Q  K  I  *  R  R  N  L  T  N  I  G  V  M  L  K  K  *  I  R  W  F  S  Y  H  V  F  W  I  L  V  T  N  L  V  L  L  A  L  H  L  R  R  C  L  Q  K  K  G  L  L  *  K  M  V  C  E  R  T  W  K  L  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  E  A  N  V  S  I  E  R  D  R  Q  A  V  R  Y  I  R  Q  S  P  A  R  W  K  N  F  Q  E  C  C  E  D  E  I  L  L  K  S  L  Y  A  W  M  F  L  Q  V  G  I  P  P  T  *  C  *  A  G  L  L  N  M  K  G  Q  L  *  S  T  P  I  V  I  L  T  W  H  Y  I  L  S  L  L  I  K  I  L  Q  V  H  F  *  V  V  I  G  R  A  *  R  E  L  Q  N  L  L  K  C  F  *  S  Y  F  E  D  I  W  F  T  T  C  Y  I  K  S  S  F  S  *  N  F  S  S  W  C  L  L  E  S  I  A  I  K  *  R  T  S  F  G  *  D  S  R  K  Y  K  G  E  I  *  Q  I  L  G  *  C  *  K  N  E  *  D  G  F  H  T  M  C  F  G  S  S  S  Q  I  *  Y  S  W  L  C  T  *  E  D  V  C  R  K  R  G  C  Y  R  K  W  C  A  N  V  H  G  S  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   K  Q  M  C  L  L  N  E  I  G  K  P  *  D  T  S  G  N  L  L  L  G  G  K  I  F  K  N  V  V  K  M  K  S  C  *  K  V  F  M  L  G  C  S  Y  K  L  E  F  H  L  H  D  V  E  Q  G  Y  *  I  *  R  G  N  C  R  V  H  R  S  *  Y  *  L  G  T  I  S  *  V  C  *  *  K  F  Y  R  Y  T  F  E  *  *  L  G  G  R  K  E  N  Y  K  I  Y  *  N  V  F  N  L  T  L  K  I  S  G  S  R  H  V  I  S  N  L  H  F  L  E  I  S  Q  V  G  V  Y  L  N  Q  L  L  S  N  E  E  Q  V  L  A  K  I  A  E  N  I  K  E  K  F  D  K  Y  W  G  D  A  E  K  M  N  K  M  V  F  I  P  C  V  L  D  P  R  H  K  F  S  T  L  G  F  A  L  K  K  M  F  A  E  K  G  A  A  I  E  N  G  V  R  T  Y  M  E  A  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25137" stop="24784"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVFNLTLKISGSRHVISNLHFLEISQVGVYLNQLLSNEEQVLAKIAENIKEKFDKYWGDAEKMNKMVFIPCVLDPRHKFSTLGFALKKMFAEKGAAIENGVRTYMEAFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25355" stop="25116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLAKKSLCLDVPTSWNSTYMMLSRVIEYEGAIVEYTDRDIDLALYLKFVDKNSTGTLLSSDWEGVKRITKFIEMFLILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34775" PGL_stop="35487"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34775" e_stop="35487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="34775" e_stop="35487" e_length="713"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34775" stop="35487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACTAACAAAGCTCCTTATTTCTGACACATTAGTAGGTGTTACCCAATTATTCACTGTCTCAATTTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATACCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAGATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTTATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAATAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCTAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAGCAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCAGCGG</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  C  Y  P  I  I  H  C  L  N  F  R  R  I  H  H  H  P  I  L  R  N  H  I  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  R  Y  D  H  K  E  I  Q  I  W  L  K  N  L  I  H  Q  A  H  E  S  S  R  G  I  C  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  F  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  R  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  L  R  R  C  T  W  S  N  E  A  F  A  *  Q  L  L  K  L  G  F  *  L  S  *  L  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  L  T  K  L  L  I  S  D  T  L  V  G  V  T  Q  L  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  Y  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  D  T  I  T  K  R  S  R  Y  G  L  K  I  S  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  R  K  A  V  F  G  T  F  V  A  R  I  F  N  L  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  I  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  *  G  D  A  L  G  L  M  K  P  L  L  S  N  S  *  S  W  A  F  N  S  L  N  S  A  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  *  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  Y  S  L  S  Q  F  *  K  D  P  P  S  P  H  P  *  K  P  H  T  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  H  S  S  S  S  *  K  Q  Q  G  H  L  *  D  Q  K  T  S  L  Q  I  C  N  A  H  T  W  S  E  K  Q  S  L  A  H  S  L  P  V  F  S  I  Y  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  N  R  T  S  H  Q  C  E  E  *  D  T  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  G  L  L  T  L  L  T  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35039" stop="35278"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINRYDHKEIQIWLKNLIHQAHESSRGICKTKRHHYKFVMPIPGPKSSLWHIRCPYFQFMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34971" stop="35168"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSIDTITKRSRYGLKISFIKLMKAAGAFVRPKDITTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="36789" PGL_stop="35397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36789" e_stop="36617"/>
            <exon e_start="35872" e_stop="35397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.002" e_score="0.925"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="36789" e_stop="36617" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.002">
            <gDNA_intron_boundary i_start="36616" i_stop="35873" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="35872" e_stop="35397" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36789" stop="36617"/>
              <exon start="35872" stop="35397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCATGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAG : AAATGGTTGACTTCGATGTGATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTTCGTAACATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGATTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCAATAGTCCGCGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGGACTCGCCCTATTTCTATACCCCCTTATAGGATGGCTCCGCTGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGCTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTAGGGTGCTCCGGT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R :   N  G  *  L  R  C  D  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  Y  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  *  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  S  N  *  V  G  F  N  S  P  R  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  R  *  R  Y  *  L  L  H  *  S  *  T  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  L  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  R  V  L  R  </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  M  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  L  V  R  N  I  S  F  L  R  A  K  K  M  V  S  K  D  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  L  A  L  F  L  Y  P  L  I  G  W  L  R  *  V  K  R  V  K  S  P  T  S  R  V  A  K  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  M  H  Y  P  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  F  K  :  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  W  F  V  T  S  P  F  F  V  L  R  K  W  L  V  R  I  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  Q  *  S  A  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  Q  I  E  I  L  T  S  A  L  I  L  N  R  D  S  P  Y  F  Y  T  P  L  *  D  G  S  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  *  G  A  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36788" stop="36617"/>
                    <exon start="35872" stop="35481"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFHALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTMTLAKPGTDPLVWEGDYTSNLVRNISFLRAKKMVSKDCLAFLAHLRDDTTQVPPIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGLALFLYPLIGWLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="35765" PGL_stop="36095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35765" e_stop="36095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="35765" e_stop="36095" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35765" stop="36095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATCACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCCCCATAAATGTTATAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATATGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACAAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  *  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  S  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  F  S  P  *  M  L  *  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  K  K  I  H  M  K  I  W  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  Q  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  H  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  S  P  H  K  C  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  R  R  Y  I  *  K  Y  G  A  R  V  K  *  Y  R  S  H  T  I  T  N  K </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  I  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  P  I  N  V  I  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  M  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35896" stop="36093"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLPINVIRQDLYTFSTITDSPTGVETRIGMSSNSQCKLRPVANEEDTYENMEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="37416" PGL_stop="36863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37416" e_stop="36863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="37416" e_stop="36863" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37416" stop="36863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGATACCTCCAGTGTTTTCTGCACCAGCAACTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGAATGAACTTTTCAGTAAGTTCTTGAAATTGACACCTCCAGTATTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGAATGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  T  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  N  S  G  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  E  *  T  F  Q  *  V  L  E  I  D  T  S  S  I  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  M  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  K  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  I  P  P  V  F  S  A  P  A  T  Q  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  N  E  L  F  S  K  F  L  K  L  T  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  E  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  Y  R  M  R  D  C  H  P  N  L  P  *  R  *  S  I  R  F  S  L  I  L  A  G  Y  L  I  R  A  R  Y  L  Q  C  F  L  H  Q  Q  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  R  M  N  F  S  V  S  S  *  N  *  H  L  Q  Y  S  R  V  L  N  L  R  M  P  T  I  F  W  L  N  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  E  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37415" stop="36864"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEEGENEQVQNEGLPPQPTLEMINQVLAYLSGLSDQGQIPPVFSAPATQVPEVQHAATVAPRMDASLEIGTFPRLTTGPIMTNDQNELFSKFLKLTPPVFKGAESEDAYDFLVECHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="47691" PGL_stop="44585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47691" e_stop="47664"/>
            <exon e_start="45287" e_stop="45197"/>
            <exon e_start="45060" e_stop="44585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47691" e_stop="47664" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.847">
            <gDNA_intron_boundary i_start="47663" i_stop="45288" i_length="2376"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45287" e_stop="45197" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45196" i_stop="45061" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45060" e_stop="44585" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47691" stop="47664"/>
              <exon start="45287" stop="45197"/>
              <exon start="45060" stop="44585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGCCGTCGCCGGCAGTCTTCGCTGAG : AGCAAGACACCTCTTTGCACAAATTATGCACTATTGCTAGTAAGGTGGGAAAAAAATCAAATCAGAAAAAGAAAATCAAACATGAATCAAG : ATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATTGTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTGCTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGATTGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGAAGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCTAGATGTTCCTTTAAACCACCTGAT</gDNA_template>
            <first_frame> F  A  V  A  G  S  L  R  *   : E  Q  D  T  S  L  H  K  L  C  T  I  A  S  K  V  G  K  K  S  N  Q  K  K  K  I  K  H  E  S  R :   W  S  K  R  C  G  *  G  G  H  R  R  *  N  *  C  P  T  K  K  C  Y  *  L  Y  P  *  A  L  A  Y  *  R  S  C  K  N  L  Y  I  V  Q  K  L  E  I  H  L  E  R  A  S  K  T  G  A  V  L  R  V  L  *  *  V  N  R  *  V  *  I  Q  I  Q  R  S  S  R  R  D  Y  V  T  A  Y  G  Q  D  C  A  V  *  S  *  R  *  S  R  R  F  S  F  I  Y  S  Y  *  *  V  G  S  L  C  H  Q  K  *  C  Q  E  A  T  P  *  N  F  *  Y  *  *  S  *  L  C  T  A  S  L  C  I  S  L  F  N  P  D  T  V  E  T  C  *  M  F  L  *  T  T  *  </first_frame>
            <second_frame>  S  P  S  P  A  V  F  A  E  :  S  K  T  P  L  C  T  N  Y  A  L  L  L  V  R  W  E  K  N  Q  I  R  K  R  K  S  N  M  N  Q   : D  G  V  S  V  A  V  E  G  D  I  E  D  R  I  S  V  L  P  R  N  V  I  D  C  I  L  E  L  L  P  I  K  E  A  A  K  T  C  T  L  S  K  S  W  R  Y  I  W  S  E  L  P  K  L  V  L  Y  Y  E  F  C  D  E  L  I  D  E  S  E  S  K  F  R  E  V  V  D  G  I  M  L  L  H  M  G  K  I  V  Q  F  D  L  D  V  R  V  E  D  L  A  S  Y  T  A  I  D  R  W  V  L  Y  V  T  R  N  S  V  K  K  L  H  L  R  I  S  N  I  D  D  R  S  Y  A  L  P  P  C  V  F  H  C  S  T  L  T  Q  L  K  L  A  R  C  S  F  K  P  P  D </second_frame>
            <third_frame>   R  R  R  R  Q  S  S  L  R :   A  R  H  L  F  A  Q  I  M  H  Y  C  *  *  G  G  K  K  I  K  S  E  K  E  N  Q  T  *  I  K  :  M  E  *  A  L  R  L  R  G  T  *  K  I  E  L  V  S  Y  Q  E  M  L  L  I  V  S  L  S  S  C  L  L  K  K  L  Q  K  L  V  H  C  P  K  A  G  D  T  F  G  A  S  F  Q  N  W  C  C  I  T  S  F  V  M  S  *  *  M  S  L  N  P  N  S  E  K  *  *  T  G  L  C  Y  C  I  W  A  R  L  C  S  L  I  L  T  L  E  *  K  I  *  L  H  I  Q  L  L  I  G  G  F  F  M  S  P  E  I  V  S  R  S  Y  T  L  E  F  L  I  L  M  I  V  A  M  H  C  L  L  V  Y  F  T  V  Q  P  *  H  S  *  N  L  L  D  V  P  L  N  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47690" stop="47664"/>
                    <exon start="45287" stop="45197"/>
                    <exon start="45060" stop="44585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSPAVFAESKTPLCTNYALLLVRWEKNQIRKRKSNMNQDGVSVAVEGDIEDRISVLPRNVIDCILELLPIKEAAKTCTLSKSWRYIWSELPKLVLYYEFCDELIDESESKFREVVDGIMLLHMGKIVQFDLDVRVEDLASYTAIDRWVLYVTRNSVKKLHLRISNIDDRSYALPPCVFHCSTLTQLKLARCSFKPPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 122 chains have been computed
$ 
$ memory statistics:
$ 27504 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2292 bytes was the average size of a spliced alignment
$ 16240 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1624 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 155 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 09:08:16
-->
