<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:50:56"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319919" ref_strand="+" ref_description="SGN-E319919 [cTOB-12-D2]">
      <seq>ggatcgctatttctgtttggcttgtatttggtaattagattcaaaaagagaaaatgtctggacgaatggctggaaagtctgtagcaaaagcagttgggcaatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggtgcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacggtccagcgagaaaggaaatgagaacgaagcagaaagggcacaagtgtaacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatgctgccagaaaatcattgcaagaatagatttcctgctcacttgccttgtttttttttcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="318" stop="3221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="618" g_stop="631" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="632" i_stop="863" i_length="232">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="864" g_stop="909" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="60" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="910" i_stop="2487" i_length="1578">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2488" g_stop="2921" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="493" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E319919" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="618" e_stop="631"/>
          <exon e_start="864" e_stop="909"/>
          <exon e_start="2488" e_stop="2921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCGCTATTTCTGTAAGTCATTCTTCACTGAATCTTTATGTTGTTTTTTGCATCTGCGTATTCATTTTTTTTTTTTGTATATCTGTATTCGTACGATTCTCTGATAATTGCAGACATTTCAATGTGGATGCAATTTCAAGGGTTTATCTGTTGAATCATATCGATTTTGAATTTTAAACGACTGATATCAATTTTGCTGCTTGAATTTTCAGTTTTTGACTGTATTTTTGATGGTTTATGGCAGGTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTGGTAAGTAGTTATAGTATTACATCTATGTGTTTTAACGATGTTCACTGTCATAATAACTTTTTTTTGCCTGCAGCTTACATGTTACTATGATCTATATTAGGTGAATGTTTGTTGAAAAATTTGGGCTTTAGTAGTGTTAGGGTTTTAGTTTTTTGAAACCTGCAATATAACATCGCAAGCTTCTCACCATCTCTACTCCATCCGCATCGTCTCTTCACCCTCTCTTTAAGTTATTCTTCATTTAATCCAGGATTAAATCCTACGTTCAATTCTGTCTGCATTAAAAATTTTGTTTTGTGCATCTGCGTTTGTACACATCCAAAAAGATGGGTTCAAGGGCTACAATTTTGAGTTCTCGAAAAGAATATTTAGAAGTGAATGAAATATTATAATGCAGAACCTATCATGATTTAGAAATTTAAAAGTATGCAAATTTAGTACTAAATTTTTTGCTTTAATGTAGAATCTACAACTGTTTTCGGGTCTTTATACCGGTCTTGCGTCCTCGTTTAGACTACATTTTACATTAATATGCACATAACATTGGGTCCTTCATGAGGTTGTTTTGTTACAAGAAATTCTTTTACCCTTATCTCTGCTAGAAGAACAGAGAACTCAAATACAAGTATTTCAAGTTGTTGAGGCACCAGGGAAAACCTTCTGCGCTGGGTGTTACGAATGACTTGGATTACGAGTGACAAATGTCATGATTATATGTGTGATATTTTAATGTAAAATAAAATGCGATGATTTGTATATATGCATGTATTGCAACATGGAATGTCATAGAAAAAATTGGAATCATCTATTTCAACAAGTCCTAATACTCCATTTTTGATAAGTAAGATAATGATAGCAATGTGCAAAAGAGGTATAGAGATGTAGTTCTTAGCTGTGCCTATAGTTAAATTAGACAGCCTGTTAAGATATCCACTTCTTGTACTTTTTTGAGATGAAATCACATGGCTACTAATTACTAGCAATTGTATTTTAACAATACGCAATCTCAAATTTTCCTAAAAAGCACCATTGATATCTCTCTCTGAAACAAAGATCCACAAAATAGAAGCAACGATTGCAATCCAAATCCCTAACCTCTTCTTTACAGCCAGTACTGTTAGAGTTCTTTAACAGTATTGGTTATACATTCATGTAAAACATATATCTAGTCACTACAGTGTGAAACAATCAGTAGGGTGAAGGTGAGAGCAACTTTAAAACTAGAGCAAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTTCTGATCCTAGTAATTTAAGTATGGAGGTCTTGTGCGCTCTTTACTTTCTCTGGCAACAATATGTCATTTGCAGTTCAGAAATATGTTGTAAATTTGATGTGGTTGTTTCAGAGGGACTAATCTTGTATTTTCGAACTCTTTATTTTTTTCATTTGCTATATGATTGTGGCATCCTCTTACAATCATGTAATAACCTTGGAACTTTCTCTGGATAACCTCTGAACATCTCATTTTAGTATGCCTTGATAGACTTACATGTCTAAAATTCGAATTTGTGAAAGAAAAATATTATATGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGTGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGGTCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTAACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGATTTCCTGCTCACTTGCCTTGTTTTTTTTTTCTTCC</genome_strand>
        <mrna_strand>GGATCGCTATTTCT........................................................................................................................................................................................................................................GTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGTGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGGTCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTAACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGATTTCCTGCTCACTTGCCTTG-TTTTTTTTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270854" ref_strand="+" ref_description="SGN-E270854 [cLEM-6-K22]">
      <seq>cgtattcatttttttttttgtatatctgtattcgtacgatgctctgataattgcagacatttcaatgtggatgcaatttcaagggtttatctgttgaatcatatcgattttgaattttaaacgactgatatcaattttgctgcttgaattttcagtttttgactgtatttttgatggtttatggcaggtttggcttgtatttggtaattagattcaaaaagagaaaatgtctggacgaatggctggaaagtctgtagcaaaagcagttgggcaatatcaatatccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="376" stop="2842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="676" g_stop="909" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="910" i_stop="2487" i_length="1578">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2488" g_stop="2542" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="288" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E270854" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="676" e_stop="909"/>
          <exon e_start="2488" e_stop="2542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATTCATTTTTTTTTTTTGTATATCTGTATTCGTACGATTCTCTGATAATTGCAGACATTTCAATGTGGATGCAATTTCAAGGGTTTATCTGTTGAATCATATCGATTTTGAATTTTAAACGACTGATATCAATTTTGCTGCTTGAATTTTCAGTTTTTGACTGTATTTTTGATGGTTTATGGCAGGTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTGGTAAGTAGTTATAGTATTACATCTATGTGTTTTAACGATGTTCACTGTCATAATAACTTTTTTTTGCCTGCAGCTTACATGTTACTATGATCTATATTAGGTGAATGTTTGTTGAAAAATTTGGGCTTTAGTAGTGTTAGGGTTTTAGTTTTTTGAAACCTGCAATATAACATCGCAAGCTTCTCACCATCTCTACTCCATCCGCATCGTCTCTTCACCCTCTCTTTAAGTTATTCTTCATTTAATCCAGGATTAAATCCTACGTTCAATTCTGTCTGCATTAAAAATTTTGTTTTGTGCATCTGCGTTTGTACACATCCAAAAAGATGGGTTCAAGGGCTACAATTTTGAGTTCTCGAAAAGAATATTTAGAAGTGAATGAAATATTATAATGCAGAACCTATCATGATTTAGAAATTTAAAAGTATGCAAATTTAGTACTAAATTTTTTGCTTTAATGTAGAATCTACAACTGTTTTCGGGTCTTTATACCGGTCTTGCGTCCTCGTTTAGACTACATTTTACATTAATATGCACATAACATTGGGTCCTTCATGAGGTTGTTTTGTTACAAGAAATTCTTTTACCCTTATCTCTGCTAGAAGAACAGAGAACTCAAATACAAGTATTTCAAGTTGTTGAGGCACCAGGGAAAACCTTCTGCGCTGGGTGTTACGAATGACTTGGATTACGAGTGACAAATGTCATGATTATATGTGTGATATTTTAATGTAAAATAAAATGCGATGATTTGTATATATGCATGTATTGCAACATGGAATGTCATAGAAAAAATTGGAATCATCTATTTCAACAAGTCCTAATACTCCATTTTTGATAAGTAAGATAATGATAGCAATGTGCAAAAGAGGTATAGAGATGTAGTTCTTAGCTGTGCCTATAGTTAAATTAGACAGCCTGTTAAGATATCCACTTCTTGTACTTTTTTGAGATGAAATCACATGGCTACTAATTACTAGCAATTGTATTTTAACAATACGCAATCTCAAATTTTCCTAAAAAGCACCATTGATATCTCTCTCTGAAACAAAGATCCACAAAATAGAAGCAACGATTGCAATCCAAATCCCTAACCTCTTCTTTACAGCCAGTACTGTTAGAGTTCTTTAACAGTATTGGTTATACATTCATGTAAAACATATATCTAGTCACTACAGTGTGAAACAATCAGTAGGGTGAAGGTGAGAGCAACTTTAAAACTAGAGCAAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTTCTGATCCTAGTAATTTAAGTATGGAGGTCTTGTGCGCTCTTTACTTTCTCTGGCAACAATATGTCATTTGCAGTTCAGAAATATGTTGTAAATTTGATGTGGTTGTTTCAGAGGGACTAATCTTGTATTTTCGAACTCTTTATTTTTTTCATTTGCTATATGATTGTGGCATCCTCTTACAATCATGTAATAACCTTGGAACTTTCTCTGGATAACCTCTGAACATCTCATTTTAGTATGCCTTGATAGACTTACATGTCTAAAATTCGAATTTGTGAAAGAAAAATATTATATGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATG</genome_strand>
        <mrna_strand>CGTATTCA-TTTTTTTTTTTGTATATCTGTATTCGTACGATGCTCTGATAATTGCAGACATTTCAATGTGGATGCAATTTCAAGGGTTTATCTGTTGAATCATATCGATTTTGAATTTTAAACGACTGATATCAATTTTGCTGCTTGAATTTTCAGTTTTTGACTGTATTTTTGATGGTTTATGGCAGGTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320679" ref_strand="+" ref_description="SGN-E320679 [cTOB-27-G16]">
      <seq>ttgtatttggtaattagattcaaaaagagaaaatgtctggacgaatggctggaaagtctgtagcaaaagcagttgggcaatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctttcaaagggagtttggggttactgggtgcttggagcctggaaacctctggggatgagtgctcgccatcgagctcgtctgcgcaaggaagttgttgttgctggacaagattggccatacggtccagcgagaaaggaaatgagaacgaagcagaaagggcacaagtgtaacagaatatcagcagaaaaacgggcaaagacagccgaactgatgcaaaaaatgcctgaaatgttggctgattacaggaagagaaagtgggaaaggaaaatgaaagcagaagaagatgctgccagaaaatcattgcaagaatagatttcctgctcacttgccttgttttttttttcttccctgtgtattttcgagccctagcaatgggcgcgaatagcggtatttacagtaaataaaattataaacatttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="571" stop="3296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="871" g_stop="909" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="910" i_stop="2487" i_length="1578">
            <donor d_prob="0.903" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2488" g_stop="2996" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="548" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E320679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="871" e_stop="909"/>
          <exon e_start="2488" e_stop="2996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTGGTAAGTAGTTATAGTATTACATCTATGTGTTTTAACGATGTTCACTGTCATAATAACTTTTTTTTGCCTGCAGCTTACATGTTACTATGATCTATATTAGGTGAATGTTTGTTGAAAAATTTGGGCTTTAGTAGTGTTAGGGTTTTAGTTTTTTGAAACCTGCAATATAACATCGCAAGCTTCTCACCATCTCTACTCCATCCGCATCGTCTCTTCACCCTCTCTTTAAGTTATTCTTCATTTAATCCAGGATTAAATCCTACGTTCAATTCTGTCTGCATTAAAAATTTTGTTTTGTGCATCTGCGTTTGTACACATCCAAAAAGATGGGTTCAAGGGCTACAATTTTGAGTTCTCGAAAAGAATATTTAGAAGTGAATGAAATATTATAATGCAGAACCTATCATGATTTAGAAATTTAAAAGTATGCAAATTTAGTACTAAATTTTTTGCTTTAATGTAGAATCTACAACTGTTTTCGGGTCTTTATACCGGTCTTGCGTCCTCGTTTAGACTACATTTTACATTAATATGCACATAACATTGGGTCCTTCATGAGGTTGTTTTGTTACAAGAAATTCTTTTACCCTTATCTCTGCTAGAAGAACAGAGAACTCAAATACAAGTATTTCAAGTTGTTGAGGCACCAGGGAAAACCTTCTGCGCTGGGTGTTACGAATGACTTGGATTACGAGTGACAAATGTCATGATTATATGTGTGATATTTTAATGTAAAATAAAATGCGATGATTTGTATATATGCATGTATTGCAACATGGAATGTCATAGAAAAAATTGGAATCATCTATTTCAACAAGTCCTAATACTCCATTTTTGATAAGTAAGATAATGATAGCAATGTGCAAAAGAGGTATAGAGATGTAGTTCTTAGCTGTGCCTATAGTTAAATTAGACAGCCTGTTAAGATATCCACTTCTTGTACTTTTTTGAGATGAAATCACATGGCTACTAATTACTAGCAATTGTATTTTAACAATACGCAATCTCAAATTTTCCTAAAAAGCACCATTGATATCTCTCTCTGAAACAAAGATCCACAAAATAGAAGCAACGATTGCAATCCAAATCCCTAACCTCTTCTTTACAGCCAGTACTGTTAGAGTTCTTTAACAGTATTGGTTATACATTCATGTAAAACATATATCTAGTCACTACAGTGTGAAACAATCAGTAGGGTGAAGGTGAGAGCAACTTTAAAACTAGAGCAAATGCCATCTGTGTTAGCAAACTAGAAGAGAGAATAGTGTTTCTGATCCTAGTAATTTAAGTATGGAGGTCTTGTGCGCTCTTTACTTTCTCTGGCAACAATATGTCATTTGCAGTTCAGAAATATGTTGTAAATTTGATGTGGTTGTTTCAGAGGGACTAATCTTGTATTTTCGAACTCTTTATTTTTTTCATTTGCTATATGATTGTGGCATCCTCTTACAATCATGTAATAACCTTGGAACTTTCTCTGGATAACCTCTGAACATCTCATTTTAGTATGCCTTGATAGACTTACATGTCTAAAATTCGAATTTGTGAAAGAAAAATATTATATGTATTTGTTTCCAGGACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGTGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGGTCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTAACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGATTTCCTGCTCACTTGCCTTGTTTTTTTTTTCTTCCCTGTGTATTTTCGAGCCCTAGCAATGGGCGCGAATAGCGGTATTTACAGTAAATAAAATTATAAACATTTGTTGT</genome_strand>
        <mrna_strand>TTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGTGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGGTCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTAACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGATTTCCTGCTCACTTGCCTTGTTTTTTTTTTCTTCCCTGTGTATTTTCGAGCCCTAGCAATGGGCGCGAATAGCGGTATTTACAGTAAATAAAATTATAAACATTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325912" ref_strand="+" ref_description="SGN-E325912 [cTOC-12-C16]">
      <seq>aacgaatgggtggaaagtctgtagcaaaagcagttgggctatatcaatatccatggcaagaaaagttggcaaaatacaaggatgagctaataaagggagtttggggttactgagagcttggagcctggaaacctgtggggatgagtgctcgccatctagctcgtctgcgcaaggaagttgttgttgctggacaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="2189" stop="2985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2488" g_stop="2685" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E325912" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2488" e_stop="2685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGTGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATT</genome_strand>
        <mrna_strand>AACGAATGGGTGGAAAGTCTGTAGCAAAAGCAGTTGGGCTATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTAATAAAGGGAGTTTGGGGTTACTGAGAGCTTGGAGCCTGGAAACCTGTGGGGATGAGTGCTCGCCATCTAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8176" stop="8985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8476" g_stop="8694" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8476" e_stop="8694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTC-TAGATACTCTTAACTTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAT</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAGTACATGTTCTTGTGATGATGACTGCCAGATTTT-GGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8547" stop="9432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8847" g_stop="9132" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8847" e_stop="9132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTATCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="9871" stop="8839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9571" g_stop="9139" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9571" e_stop="9139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCATGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTATACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGCACTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTAATTTTCCCCATCCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="8906" stop="10059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9206" g_stop="9759" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9206" e_stop="9759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATTAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGTGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTATAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACATGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAATAGAGGCGCCACATATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10229" stop="8910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9929" g_stop="9210" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9929" e_stop="9210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATATGTGGCGCCTCTATTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCATGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTATACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGCACTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTAATTTTCCCCAT-CCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10226" stop="8963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9926" g_stop="9263" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9926" e_stop="9263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATATGTGGCGCCTCTATTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCATGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTATACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGCACTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATT-CCTCATTCTGTACTTGTTAATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="10790" stop="9493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10490" g_stop="9793" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10490" e_stop="9793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCACTTGTCTGCCCGTTGCCCCTACCATGTGGTGCTGTAGTGGCTCTAGTTTTCCCGTCACCCTGGCCGTTTTGGTGACCACCATTACCTCGGACACCACGTCCCCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAGATATTAGGGGTCTATAACTCTGGTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCTCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCCGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCAGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGATCTCAACCCCTTCACAAAGCGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="11157" stop="10227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10857" g_stop="10527" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10857" e_stop="10527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATTAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACGCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12077" stop="10800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11777" g_stop="11099" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11777" e_stop="11099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCTTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTGAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCATAATGCCCATACCTAGTTTGAAAAGCAGTCTTTGGCACATCTGTTGCCCCTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTTAGTTGTCTGTAGTCTATGCACATTCGAAAGCTCCCATCCTTTTTTTTCACAAATAATACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACACTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTTAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12148" stop="10954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11848" g_stop="11254" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11848" e_stop="11254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGAAACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCTTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGC-TGAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCATAATGCCCATACCTAGTTTGAAAAGCAGTCTTTGGCACATCTGTTGCCCCTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTTAGTTGTCTGTAGTCTATGCACATTCGAAAGC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="12148" stop="11024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11848" g_stop="11324" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11848" e_stop="11324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGAAACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCTTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGC-TGAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCATAATGCCCATACCTAGTTTGAAAAGCAGTCTTTGGCACATCTGTTGCCCCTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215035" ref_strand="+" ref_description="SGN-E215035 [cLEC-78-O5]">
      <seq>gaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattagggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagctttgtttaatgagtatacaaaccccatttcaaatgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25685" stop="24516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25385" g_stop="24778" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E215035" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25385" e_stop="24778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATTTTCAAGAATGTTGTGAAGATG-AAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATG-TTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>GAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTAGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCTTTGTTTAATGAGTATACAAACCCCATTTCAAATGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347322" ref_strand="+" ref_description="SGN-E347322 [cTOF-33-O19]">
      <seq>agaagcatgtgtctattgaacgagttaggcaagcagtgagatacatcaggcaatctcctgctaggtcgaaaaaatttcaagaatgttgtgaagatgaaaatcttgctaaaaagtctttatgcttggatgttcctacaaggtggaattccacctacatgatgttgagcagggttattgaatatgaaggggcaattgtagagtacgccgatcgtgcaattggcttgacactatatcttaagtttgttgataaaaactctacagctacacttttgagtagtgattgtgagggtgtaaagagaattataaaatttcttgaaatgttttttagtcttactttgaagatatctggttcacgatatgttacatccaatcttcatttttttgaattttttcaagttggtgtttacttgaatcaattgatatcaaatgaagatcaagttttgtctaaaatggaagaaaatatgaaggagaatggcaaatattacggtgatgctgaaaaaatgaataagatggttttcataccatgtgttttggatcctcgtcacaaatttagtactcttggctttgcacttaagaagatgtttggagaaaaaggggctgctatagaaaatggtgtgggaacgtacatggaagccttgtttaatgagtatacaaaccccatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="25746" stop="24516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25454" g_stop="24784" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E347322" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25454" e_stop="24784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCAAATGTGTCTATTGAACGAGATAGGCAAGCCGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAAATTTTCAAGAATGTTGTGAAGATG-AAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATG-TTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AGAAGC--ATGTGTCTATTGAACGAGTTAGGCAAGCAGTGAGATACATCAGGCAATCTCCTGCTAGGTCGAAAAAATTTCAAGAATGTTGTGAAGATGAAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGGTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACGCCGATCGTGCAATTGGCTTGACACTATATCTTAAGTTTGTTGATAAAAACTCTACAGCTACACTTTTGAGTAGTGATTGTGAGGGTGTAAAGAGAATTATAAAATTTCTTGAAATGTTTTTTAGTCTTACTTTGAAGATATCTGGTTCACGATATGTTACATCCAATCTTCATTTTTTTGAATTTTTTCAAGTTGGTGTTTACTTGAATCAATTGATATCAAATGAAGATCAAGTTTTGTCTAAAATGGAAGAAAATATGAAGGAG-AA--TGGCAAATATTACGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGGAGAAAAAGGGGCTGCTATAGAAAATGGTGTGGGAACGTACATGGAAGCCTTGTTTAATGAGTATACAAACCCCATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34475" stop="35787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34775" g_stop="35487" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34775" e_stop="35487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACTAACAAAGCTCCTTATTTCTGACACATTAGTAGGTGTTACCCAATTATTCACTGTCTCAATTTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATACCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAGATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTTATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAATAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCTAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAGCAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCAGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTCA-CAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34475" stop="35670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34775" g_stop="35370" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34775" e_stop="35370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACTAACAAAGCTCCTTATTTCTGACACATTAGTAGGTGTTACCCAATTATTCACTGTCTCAATTTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATACCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAGATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTTATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAATAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34475" stop="35600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34775" g_stop="35300" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34775" e_stop="35300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACTAACAAAGCTCCTTATTTCTGACACATTAGTAGGTGTTACCCAATTATTCACTGTCTCAATTTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATACCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAGATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTTATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="34546" stop="35823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34846" g_stop="35524" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34846" e_stop="35524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTACCCAATTATTCACTGTCTCAATTTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATACCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAGATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTTATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAATAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCTAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAGCAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCAGC-GGAGCCATCCTATAAGGGGGTATAGAAATAGGGCGAGTC</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37089" stop="35083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36789" g_stop="36617" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36616" i_stop="35873" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.002" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35872" g_stop="35397" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="651" r_length="478" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36789" e_stop="36617"/>
          <exon e_start="35872" e_stop="35397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCATGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGGGTGAAGCCAGATGACTTCACCATGGCATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCAGGAGGTTACCCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGACTCCAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGAAACTGTCCAAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGCCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTAACGGACAAATGGGAACTACTGCAGCGCAACATGGTAGGGGCAACGGGCAAGCAGGCGATAGGGCCCATTGTTACGCTTTCCCTGGGTGGTCGGAAGCGGAGACATCAGATGTTGTTATCACAGGTAATCTTTTTGTTTGTGATTGTATGGCTTCTGTATTATTTGACCCTGGCTCCATATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTATAACATTTATGGGGAGAAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTGATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTTCGTAACATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGATTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCAATAGTCCGCGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGG-ACTCGCCCTATTTCTATACCCCCTTATAGGATGGCT-CCGCTGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGCTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTAGGGTGCTCCGGT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35465" stop="36396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35765" g_stop="36095" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35765" e_stop="36095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATCACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCCCCATAAATGTTATAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATATGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACAAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35756" stop="37145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36056" g_stop="36845" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36056" e_stop="36845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTCAAATAATACAGAAGCCATACAATCACAAACAAAAAGATTACCTGTGATAACAACATCTGATGTCTCCGCTTCCGACCACCCAGGGAAAGCGTAACAATGGGCCCTATCGCCTGCTTGCCCGTTGCCCCTACCATGTTGCGCTGCAGTAGTTCCCATTTGTCCGTTACCCCGGCCGTTTTGGTGACCACCATTACCTCGGCCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTTGGACAGTTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGGGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCTGGCTTCACCCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCATGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCTAAGTCCAGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="35832" stop="37129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36132" g_stop="36829" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36132" e_stop="36829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGACCACCCAGGGAAAGCGTAACAATGGGCCCTATCGCCTGCTTGCCCGTTGCCCCTACCATGTTGCGCTGCAGTAGTTCCCATTTGTCCGTTACCCCGGCCGTTTTGGTGACCACCATTACCTCGGCCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTTGGACAGTTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGGGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCTGGCTTCACCCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCATGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCTAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="37716" stop="36563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37416" g_stop="36863" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37416" e_stop="36863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGATACCTCCAGTGTTTTCTGCACCAGCAACTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGAATGAACTTTTCAGTAAGTTCTTGAAATTGACACCTCCAGTATTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGAATGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249727" ref_strand="+" ref_description="SGN-E249727 [cLEF-57-A6]">
      <seq>ttcgccgtcgccggcagtcttcgctgagagcaagacacctctttgcacaaattatgcactattgctagtaaggtgggaaaaaaatcaaatcagaaaaagaaaatcaaacatgaatcaagatggagtaagcgttgcggttgagggggacatagaagatagaattagtgtcctaccaagaaatgttattgattgtatccttgagctcttgcctattaaagaagctgcaaaaacttgtacattgtccaaaagctggagatacatttggagcgagcttccaaaactggtgctgtattacgagttttgtgatgagttaatagatgagtctgaatccaaattcagagaagtagtagacgggattatgttactgcatatgggcaagattgtgcagtttgatcttgacgttagagtagaagatttagcttcatatacagctattgataggtgggttctttatgtcaccagaaatagtgtcaagaagctacaccttagaatttctaatattgatgatcgtagctatgcactgcctccttgtgtatttcactgttcaaccctgacacagttgaaacttgctagatgttcctttaaaccacctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="47991" stop="44285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47691" g_stop="47664" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47663" i_stop="45288" i_length="2376">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45287" g_stop="45197" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="119" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45196" i_stop="45061" i_length="136">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45060" g_stop="44585" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="595" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E249727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47691" e_stop="47664"/>
          <exon e_start="45287" e_stop="45197"/>
          <exon e_start="45060" e_stop="44585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCCGTCGCCGGCAGTCTTCGCTGAGGTTTGATCGGTTCTCTTCTCTTTTATTTCATACAGAAGAACAAATAAACCAAATCAAACTAAAATTTTGAGCTATTATTTATCACCGTTTTTTTAGCGGTACCTGAAATTCTTCACGAAGCCCTAAATTATGAAATGAATGAGTTTTTGTCGGTCTGGTAGAAATGGAATTGGCAACTAGAATAAGAAAATCTCATGCTTAGATTATTCATGTACAGAGAGCTTGTGATTTGAATTTTGATCTGTATGTAATTGTTGTTTGGTAGATATGGAATTTTGTAACTAGAATAAAATTGAATCCTATTTTTTTCTTTACAATGTGGTGTTAAAGCCAGCTTTCGCACAATTCAACTAATTGTACTGGATATGTTCGGCTTCCCACCAGCAACATTAGGTTTTTATCTACCAAGACTTGGATCGTTGGAAAGAAAGGCAGACCTAGTGTTTTTTGGATTTGAAAATCATTTTTCTAGAGAGCAAAATGTTTCCAAGTTTTGAAGTGTTTTGTTTTAGTAGAAGCAAGTGGTTTCTCCTACAGTGAAAGGCTTCACAGAGAAGAGGTTCTCTTATTTCTAATGAATCTATTATAAGTGAAGTTGTAATGTTATATTTGATTATGCTTTCATTAGTAGAATTCTTTGCGTTGTCTTCCTTATTTTAGTTTTAATTTAAAGAATTTTTGCTCTATCAAGTGTTTTTGTGAGTGACCTATATATTGTTACGTAGTGTGATTTGATGTTATCGTTTTGTTCCAATTTGTTGTATTCTTTTAAATTTCGAGCTTCAAAGCTTGAATATCCTTAACTAAATTCATGGCGTCGCCACTATCTTGGGTTGTTCGGTGGTTCAGGTTGTGTATGACAATTTCAGTCGAGGTCCTGATGTCGTTGCTCCTTTTCTGCCCTTTTGGAGGATAAAAATGTTTATTTTTTGGTTAACTGTGAAGAATTACCATTGACAGCCAAAAATTTACACCTATAGAGCACTTTGGGTAGAGGAGCCACCTTCCACGAAGGTACCCTTTCCTCTAAAGCCTCAAACATAGACAAATCTAGTTACAAAGTTTCTGAACCAAGTATCTACATTTACTAGCTTTCCTTCTATCCTTCGGGTAATCCACTCTTTCCAGTATCTTTTTCTTTATCTGTCTGATTGTAATCTCTGTATTTACTATTGTCCCTGTGAATAGTTTCCAATTTCTTGCTCTTCAAGTGTGATAGATTCTGGCTCCCCATATAGCTATAGCTATTTCCTTCTTATATTGCTTCCAGTCTCTTCCTCTTATCCATTTTAGGCATTCTGTCACTTCCGTTTTTTTTGTATTCAAATACCCGACCAAGTCTCAAGTGCTTCCTTCACTTTTGTTGTCCAGGTACATTCTGCAAATAAATGTACTTGAGTCTCCGGTTTGCTTTCTCCACATAGGCAACACTTTTCATCTTCTATTGGCATTTGCAGTTTGATTTTCGTCTCTTTCATTAGCAGTTAATCCCGATTTGCTAGCCATATAATAAACCTGTGTCTAGGCAGCATGAGAGAGTTCCATATCAAGTCTGCTACAGGTAGTTTCAACTGCCTACCCAGTAACTGGTTGTAACTACAACTCACATTATATGCTCCATAGGTCAATAGACAGTAGGTTCCATTAGTATACCACATTCCCATGGTTAATTTAATGGAGTTAAGCTTCCTCCAATACCAGCTGCTATCCTTAGAGGGTGTATGTGTCCAAAAATCTTGCTCGTCTTTCATATTTAGTCCATGCACCCACCTTATCCATAGTGTATCTGTGTTGCTAGCAATCTGCCATATCAACTTACCAACTGATGCAATATTCCATAATCTGCAGCTCCTGATGTTCAGTCCACCATTCTTCTTTGGCACACAAATTTTCTCCCACGATACGAGTGCTACCTTCCTCTTGATCTCTTATTTCCCAATATGCCATAGATAATCCCTACATTTTCTATCAACCTCTTTCAAAATACTTTCAAACAAGATGAAAACATTGCTCCAAAAGTTATAGAGCGAGTACATCATTTATGACCTGCAATCTGCCTGCATCTGACAATGTTTTTGAATATGCACTAGTAATCGTGTTGGTTATCTTGCCGATCAGTTGATGGCAATCGATCTTTGTTCATTTCTTTGATGATAATGGCAAGCCCAAGTATCTGATAGGGAAGATCACCAAGTGTAAATCCTGTCAGCTGCAATATTTGTTCCTTCATAACATCATCCACCCCAGCTACGAATACATTAGACTTGTCCAGATTTGCCACAAGGCCTTTCACCCTACTGAAATGGTTCAACACCTCTATCATCCTTCTTATAGACATCTACTATCAATGATCCCCTCTTTTCTTGTCACTGACAGAGCAAGACACCTCTTTGCACAAATTATGCACTATTGCTAGTAAGGTGGGAAAAAAATCAAATCAGAAAAAGAAAATCAAACATGAATCAAGGTACTTCCTCTTCTTTTTATTTTGTTGATTCTTCCTGGATTATAAGCTTGATGCCTTATTGAGATTTATCAACTTTTCTCTAACAGATTAAGGAAAATTTAACCCTTAATTAGATCATTTAAATAATTTTTCACAGATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATTGTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTGCTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGATTGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGAAGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCTAGATGTTCCTTTAAACCACCTGAT</genome_strand>
        <mrna_strand>TTCGCCGTCGCCGGCAGTCTTCGCTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAGACACCTCTTTGCACAAATTATGCACTATTGCTAGTAAGGTGGGAAAAAAATCAAATCAGAAAAAGAAAATCAAACATGAATCAAG........................................................................................................................................ATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATTGTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTGCTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGATTGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGAAGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCTAGATGTTCCTTTAAACCACCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="121447" stop="122432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121747" g_stop="122132" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121747" e_stop="122132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAG-TTTTTCTTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTAGTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTATGATTTAGAATAAAAATAATATTCAGTCACTAACAATTATCAAGAACCGAAGACATATACTACTATTGGTTGAATATAACATGCTATACAAAACTTTTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCATGTTGTACTTCAGTCTATCATACCGTTGGTTAAGGGTAAGACGATGGATTCAAGTTTTATCG</genome_strand>
        <mrna_strand>TTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATATTTTATGATTTAGAAT-AAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273497" ref_strand="+" ref_description="SGN-E273497 [cLEN-3-J16]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaatttatatcattgagcgctacctcatatcaaagataccgtcgacggttatttgatatcgattccaacaagacataacttatcgagatctcttcaatttttttcattatttcaggtacctgaacctttttcaagattttatgaagtgttatgtcaatgtgctcctttatagcacttgcctcattatcatgaccatattgatcatttgctccttccttctttaaggaattttatatttggaatcaattggtctattacgctttcggcgtatcataaactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="125440" stop="124171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125147" g_stop="124471" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E273497" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125147" e_stop="124471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTAAAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACAAAAAAAAAAGAACATCTCCAATAATGTCAGGATTTTTACGATAAACCTGTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATAGTATCGCATATTAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAATAAAATATACTTGAATTGTGCATTTTACTTGTCCAACCATTTATCTGTCCACACTATATGACAAATTTAAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATATCATCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTC-A--TTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCATTCCTTCTTCAAGGAATTTTATATTTGAAATCGATTGGTCTATTACGCTTCCGACGTATCATAGACTCTG</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAA-AACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCGTCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCAATTTTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCCTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTTAAGGAATTTTATATTTGGAATCAATTGGTCTATTACGCTTTCGGCGTATCATAAACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273387" ref_strand="+" ref_description="SGN-E273387 [cLEN-3-J20]">
      <seq>ttcagacacctggattgtttcaaggattttcatataaccttcattacaatttttcattacatgcattcaagtttttcatatgttgccagatcaaaacaaacctcattgcatccaccaaaggagaaaacatctccaataatgtcaggatttttgcgataaacctttatgccccaaggcacaaaccgtatttgatatcttacggttatactatcacataataatttatttgtaccccactgacattataccttgatttatggactaccagtccaaaatgtcacttttctaagtgaaacaaaatatacttgaattgtgcattttacttggctaaccatttatctgttcacactatatgacagatttgaattcaagatcctcatcacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="-" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="125440" stop="124444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125147" g_stop="124744" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="-" ref_id="SGN-E273387" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.041" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125147" e_stop="124744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTAAAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACAAAAAAAAAAGAACATCTCCAATAATGTCAGGATTTTTACGATAAACCTGTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATAGTATCGCATATTAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAATAAAATATACTTGAATTGTGCATTTTACTTGTCCAACCATTTATCTGTCCACACTATATGACAAATTTAAATTCAAGATCCTCGTCACAATTT</genome_strand>
        <mrna_strand>TTCAGACACCTGGATTGTTTCAAGGATTTTCATATAACCTTCA---T-TA-C---A-A-T----TT-TTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACCAAAGGAGAA-AACATCTCCAATAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATACTATCACATAATAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATACTTGAATTGTGCATTTTACTTGGCTAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCCTCATCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391540" ref_strand="+" ref_description="SGN-E391540 [TUS-16-I1]">
      <seq>acgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="124452" stop="125440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124752" g_stop="125432" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E391540" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124752" e_stop="125432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGATCTTGAATTTAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGACAAGTAAAATGCACAATTCAAGTATATTTTATTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTAATATGCGATACTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATACAGGTTTATCGTAAAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTTTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTGCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACACACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCACATGCATTGAGTAGCCCAGANTGATTGTGCGGCCGCCAAAC</genome_strand>
        <mrna_strand>ACGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCA-A-TGATTATGAGATCACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205808" ref_strand="+" ref_description="SGN-E205808 [cLEC-20-M21]">
      <seq>cgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="124453" stop="125440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124753" g_stop="125308" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E205808" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124753" e_stop="125308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGATCTTGAATTTAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGACAAGTAAAATGCACAATTCAAGTATATTTTATTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTAATATGCGATACTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATACAGGTTTATCGTAAAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTTTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTGCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAG</genome_strand>
        <mrna_strand>CGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202657" ref_strand="+" ref_description="SGN-E202657 [cLEC-19-H1]">
      <seq>gatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttaaaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacgggttgcttcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgatttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="124457" stop="125440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124757" g_stop="125211" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E202657" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124757" e_stop="125211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGAATTTAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGACAAGTAAAATGCACAATTCAAGTATATTTTATTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTAATATGCGATACTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATACAGGTTTATCGTAAAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTTTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTGCAATAAAGCTTCAAGAATCCTTATATAGATTGAAAT</genome_strand>
        <mrna_strand>GATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAAAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGGTTGCTTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTGGTGGATGCAATGAGGTTTGATTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267707" ref_strand="+" ref_description="SGN-E267707 [cLEI-12-K2]">
      <seq>ttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0189E08-fE7xM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0189E08.1" temp_strand="+" temp_description="C12HBa0189E08.1  AC216366.1 htgs_phase:1 submitted_to_sgn_as:C12HBa0189E08 upload_account_name:italy *** WORKING DRAFT SEQUENCE ***">
        <position start="124502" stop="125440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124801" g_stop="125384" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0189E08.1" gen_strand="+" ref_id="SGN-E267707" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0189E08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124801" e_stop="125384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACAAGTAAAATGCACAATTCAAGTATATTTTATTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTAATATGCGATACTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATACAGGTTTATCGTAAAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTTTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTGCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACACACACTGAAAAGTTTTGATGCAATTTTATATGGA</genome_strand>
        <mrna_strand>TTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTT-TTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAACTTTTTCAATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAG-AAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="618" PGL_stop="2996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="676" e_stop="909"/>
            <exon e_start="2488" e_stop="2996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="676" e_stop="909" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="910" i_stop="2487" i_length="1578"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2488" e_stop="2996" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="676" stop="909"/>
              <exon start="2488" stop="2542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="871" stop="909"/>
              <exon start="2488" stop="2996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2488" stop="2685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTATTCATTTTTTTTTTTTGTATATCTGTATTCGTACGATTCTCTGATAATTGCAGACATTTCAATGTGGATGCAATTTCAAGGGTTTATCTGTTGAATCATATCGATTTTGAATTTTAAACGACTGATATCAATTTTGCTGCTTGAATTTTCAGTTTTTGACTGTATTTTTGATGGTTTATGGCAGGTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTG : GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGTGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGGTCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTAACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGATTTCCTGCTCACTTGCCTTGTTTTTTTTTTCTTCCCTGTGTATTTTCGAGCCCTAGCAATGGGCGCGAATAGCGGTATTTACAGTAAATAAAATTATAAACATTTGTTGT</gDNA_template>
            <first_frame> R  I  H  F  F  F  L  Y  I  C  I  R  T  I  L  *  *  L  Q  T  F  Q  C  G  C  N  F  K  G  L  S  V  E  S  Y  R  F  *  I  L  N  D  *  Y  Q  F  C  C  L  N  F  Q  F  L  T  V  F  L  M  V  Y  G  R  F  G  L  Y  L  V  I  R  F  K  K  R  K  C  L  :  D  E  W  L  E  S  L  *  Q  K  Q  L  G  N  I  N  I  H  G  K  K  S  W  Q  N  T  R  M  S  F  Q  R  E  F  G  V  T  G  C  L  E  P  G  N  L  W  G  *  V  L  A  I  E  L  V  C  A  R  K  L  L  L  L  D  K  I  G  H  T  V  Q  R  E  R  K  *  E  R  S  R  K  G  T  S  V  T  E  Y  Q  Q  K  N  G  Q  R  Q  P  N  *  C  K  K  C  L  K  C  W  L  I  T  G  R  E  S  G  K  G  K  *  K  Q  K  K  M  L  P  E  N  H  C  K  N  R  F  P  A  H  L  P  C  F  F  F  L  P  C  V  F  S  S  P  S  N  G  R  E  *  R  Y  L  Q  *  I  K  L  *  T  F  V   </first_frame>
            <second_frame>  V  F  I  F  F  F  C  I  S  V  F  V  R  F  S  D  N  C  R  H  F  N  V  D  A  I  S  R  V  Y  L  L  N  H  I  D  F  E  F  *  T  T  D  I  N  F  A  A  *  I  F  S  F  *  L  Y  F  *  W  F  M  A  G  L  A  C  I  W  *  L  D  S  K  R  E  N  V  W :   T  N  G  W  K  V  C  S  K  S  S  W  A  I  S  I  S  M  A  R  K  V  G  K  I  Q  G  *  A  F  K  G  S  L  G  L  L  G  A  W  S  L  E  T  S  G  D  E  C  S  P  S  S  S  S  A  Q  G  S  C  C  C  W  T  R  L  A  I  R  S  S  E  K  G  N  E  N  E  A  E  R  A  Q  V  *  Q  N  I  S  R  K  T  G  K  D  S  R  T  D  A  K  N  A  *  N  V  G  *  L  Q  E  E  K  V  G  K  E  N  E  S  R  R  R  C  C  Q  K  I  I  A  R  I  D  F  L  L  T  C  L  V  F  F  F  F  P  V  Y  F  R  A  L  A  M  G  A  N  S  G  I  Y  S  K  *  N  Y  K  H  L  L  </second_frame>
            <third_frame>   Y  S  F  F  F  F  V  Y  L  Y  S  Y  D  S  L  I  I  A  D  I  S  M  W  M  Q  F  Q  G  F  I  C  *  I  I  S  I  L  N  F  K  R  L  I  S  I  L  L  L  E  F  S  V  F  D  C  I  F  D  G  L  W  Q  V  W  L  V  F  G  N  *  I  Q  K  E  K  M  S   : G  R  M  A  G  K  S  V  A  K  A  V  G  Q  Y  Q  Y  P  W  Q  E  K  L  A  K  Y  K  D  E  L  S  K  G  V  W  G  Y  W  V  L  G  A  W  K  P  L  G  M  S  A  R  H  R  A  R  L  R  K  E  V  V  V  A  G  Q  D  W  P  Y  G  P  A  R  K  E  M  R  T  K  Q  K  G  H  K  C  N  R  I  S  A  E  K  R  A  K  T  A  E  L  M  Q  K  M  P  E  M  L  A  D  Y  R  K  R  K  W  E  R  K  M  K  A  E  E  D  A  A  R  K  S  L  Q  E  *  I  S  C  S  L  A  L  F  F  F  S  S  L  C  I  F  E  P  *  Q  W  A  R  I  A  V  F  T  V  N  K  I  I  N  I  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="888" stop="909"/>
                    <exon start="2488" stop="2885"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQKEKMSGRMAGKSVAKAVGQYQYPWQEKLAKYKDELSKGVWGYWVLGAWKPLGMSARHRARLRKEVVVAGQDWPYGPARKEMRTKQKGHKCNRISAEKRAKTAELMQKMPEMLADYRKRKWERKMKAEEDAARKSLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="618" e_stop="631"/>
            <exon e_start="864" e_stop="909"/>
            <exon e_start="2488" e_stop="2996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="618" e_stop="631" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="632" i_stop="863" i_length="232"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="864" e_stop="909" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="910" i_stop="2487" i_length="1578"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2488" e_stop="2996" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="618" stop="631"/>
              <exon start="864" stop="909"/>
              <exon start="2488" stop="2921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="871" stop="909"/>
              <exon start="2488" stop="2996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2488" stop="2685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATCGCTATTTCT : GTTTGGCTTGTATTTGGTAATTAGATTCAAAAAGAGAAAATGTCTG : GACGAATGGCTGGAAAGTCTGTAGCAAAAGCAGTTGGGCAATATCAATATCCATGGCAAGAAAAGTTGGCAAAATACAAGGATGAGCTTTCAAAGGGAGTTTGGGGTTACTGGGTGCTTGGAGCCTGGAAACCTCTGGGGATGAGTGCTCGCCATCGAGCTCGTCTGCGCAAGGAAGTTGTTGTTGCTGGACAAGATTGGCCATACGGTCCAGCGAGAAAGGAAATGAGAACGAAGCAGAAAGGGCACAAGTGTAACAGAATATCAGCAGAAAAACGGGCAAAGACAGCCGAACTGATGCAAAAAATGCCTGAAATGTTGGCTGATTACAGGAAGAGAAAGTGGGAAAGGAAAATGAAAGCAGAAGAAGATGCTGCCAGAAAATCATTGCAAGAATAGATTTCCTGCTCACTTGCCTTGTTTTTTTTTTCTTCCCTGTGTATTTTCGAGCCCTAGCAATGGGCGCGAATAGCGGTATTTACAGTAAATAAAATTATAAACATTTGTTGT</gDNA_template>
            <first_frame> G  S  L  F  L :   F  G  L  Y  L  V  I  R  F  K  K  R  K  C  L  :  D  E  W  L  E  S  L  *  Q  K  Q  L  G  N  I  N  I  H  G  K  K  S  W  Q  N  T  R  M  S  F  Q  R  E  F  G  V  T  G  C  L  E  P  G  N  L  W  G  *  V  L  A  I  E  L  V  C  A  R  K  L  L  L  L  D  K  I  G  H  T  V  Q  R  E  R  K  *  E  R  S  R  K  G  T  S  V  T  E  Y  Q  Q  K  N  G  Q  R  Q  P  N  *  C  K  K  C  L  K  C  W  L  I  T  G  R  E  S  G  K  G  K  *  K  Q  K  K  M  L  P  E  N  H  C  K  N  R  F  P  A  H  L  P  C  F  F  F  L  P  C  V  F  S  S  P  S  N  G  R  E  *  R  Y  L  Q  *  I  K  L  *  T  F  V   </first_frame>
            <second_frame>  D  R  Y  F   : C  L  A  C  I  W  *  L  D  S  K  R  E  N  V  W :   T  N  G  W  K  V  C  S  K  S  S  W  A  I  S  I  S  M  A  R  K  V  G  K  I  Q  G  *  A  F  K  G  S  L  G  L  L  G  A  W  S  L  E  T  S  G  D  E  C  S  P  S  S  S  S  A  Q  G  S  C  C  C  W  T  R  L  A  I  R  S  S  E  K  G  N  E  N  E  A  E  R  A  Q  V  *  Q  N  I  S  R  K  T  G  K  D  S  R  T  D  A  K  N  A  *  N  V  G  *  L  Q  E  E  K  V  G  K  E  N  E  S  R  R  R  C  C  Q  K  I  I  A  R  I  D  F  L  L  T  C  L  V  F  F  F  F  P  V  Y  F  R  A  L  A  M  G  A  N  S  G  I  Y  S  K  *  N  Y  K  H  L  L  </second_frame>
            <third_frame>   I  A  I  S  :  V  W  L  V  F  G  N  *  I  Q  K  E  K  M  S   : G  R  M  A  G  K  S  V  A  K  A  V  G  Q  Y  Q  Y  P  W  Q  E  K  L  A  K  Y  K  D  E  L  S  K  G  V  W  G  Y  W  V  L  G  A  W  K  P  L  G  M  S  A  R  H  R  A  R  L  R  K  E  V  V  V  A  G  Q  D  W  P  Y  G  P  A  R  K  E  M  R  T  K  Q  K  G  H  K  C  N  R  I  S  A  E  K  R  A  K  T  A  E  L  M  Q  K  M  P  E  M  L  A  D  Y  R  K  R  K  W  E  R  K  M  K  A  E  E  D  A  A  R  K  S  L  Q  E  *  I  S  C  S  L  A  L  F  F  F  S  S  L  C  I  F  E  P  *  Q  W  A  R  I  A  V  F  T  V  N  K  I  I  N  I  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="888" stop="909"/>
                    <exon start="2488" stop="2885"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQKEKMSGRMAGKSVAKAVGQYQYPWQEKLAKYKDELSKGVWGYWVLGAWKPLGMSARHRARLRKEVVVAGQDWPYGPARKEMRTKQKGHKCNRISAEKRAKTAELMQKMPEMLADYRKRKWERKMKAEEDAARKSLQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8476" PGL_stop="8694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8476" e_stop="8694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="8476" e_stop="8694" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8476" stop="8694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTACTCCGGATTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTAGATACTCTTAACTTTAGTAATTTGAAGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAT</gDNA_template>
            <first_frame> S  L  L  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  F  M  S  *  C  L  E  V  P  A  W  T  S  F  L  C  I  L  A  S  R  Y  S  *  L  *  *  F  E  V  D  V  L  V  M  M  T  S  R  F  W  G  I  I  I  V  V  E  F  L  E  V  I  D </first_frame>
            <second_frame>  H  Y  S  G  F  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  Y  V  F  *  L  L  D  T  L  N  F  S  N  L  K  *  M  F  L  *  *  *  L  P  D  F  G  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   I  T  P  D  F  R  V  S  *  C  F  *  L  G  L  D  L  P  L  H  V  L  M  P  *  S  S  G  M  D  *  L  F  M  Y  F  S  F  *  I  L  L  T  L  V  I  *  S  R  C  S  C  D  D  D  F  Q  I  L  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0189E08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8847" PGL_stop="9132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8847" e_stop="9132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="8847" e_stop="9132" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8847" stop="9132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTATCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  T  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  Y  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  I  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8896" stop="9132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="10490" PGL_stop="9139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10490" e_stop="9139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="10490" e_stop="9139" e_length="1352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10490" stop="9793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9929" stop="9210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9926" stop="9263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9571" stop="9139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCACTTGTCTGCCCGTTGCCCCTACCATGTGGTGCTGTAGTGGCTCTAGTTTTCCCGTCACCCTGGCCGTTTTGGTGACCACCATTACCTCGGACACCACGTCCCCCAGAATAACGGCCTCTGCCATGACCACCTCTACCTCTAGATATTAGGGGTCTATAACTCTGGTTTGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCTCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCCGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCGGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCAGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGATCTCAACCCCTTCACAAAGCGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATATGTGGCGCCTCTATTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCATTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCATGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGCCGCATGTTATACCTCCGGAGCCTGAGGTGCTGGTGCAGAAAACACTGGAGGCACTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTCATTCTGTACTTGTTAATTTTCCCCATCCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> F  *  P  P  R  E  S  V  T  M  G  P  I  T  C  L  P  V  A  P  T  M  W  C  C  S  G  S  S  F  P  V  T  L  A  V  L  V  T  T  I  T  S  D  T  T  S  P  R  I  T  A  S  A  M  T  T  S  T  S  R  Y  *  G  S  I  T  L  V  W  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  S  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  R  V  R  T  I  K  L  T  S  L  P  K  P  F  *  C  R  C  H  G  E  V  I  G  L  H  S  F  H  L  Y  H  E  V  Y  H  F  L  K  G  F  C  S  S  R  Y  L  *  G  *  N  P  Q  F  *  S  Q  P  L  H  K  A  A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  S  P  G  N  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  M  W  R  L  Y  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  *  G  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  R  H  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  *  F  L  I  L  Y  L  L  I  F  P  I  L  P  F  S  Y  Y  F  F  S  R  W  R  S  H  R  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </first_frame>
            <second_frame>  S  D  R  P  G  K  A  *  Q  W  A  L  S  L  V  C  P  L  P  L  P  C  G  A  V  V  A  L  V  F  P  S  P  W  P  F  W  *  P  P  L  P  R  T  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  D  I  R  G  L  *  L  W  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  Q  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  C  G  A  S  I  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  H  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  T  G  H  V  V  R  R  G  N  V  P  I  S  N  E  A  S  M  R  G  A  T  V  A  A  C  Y  T  S  G  A  *  G  A  G  A  E  N  T  G  G  T  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  *  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L  </second_frame>
            <third_frame>   L  T  A  Q  G  K  R  N  N  G  P  Y  H  L  S  A  R  C  P  Y  H  V  V  L  *  W  L  *  F  S  R  H  P  G  R  F  G  D  H  H  Y  L  G  H  H  V  P  Q  N  N  G  L  C  H  D  H  L  Y  L  *  I  L  G  V  Y  N  S  G  L  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  L  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  P  N  P  V  L  *  S  K  N  H  *  T  H  L  P  S  E  T  F  L  M  S  M  P  W  *  S  H  R  A  S  L  L  P  P  L  S  R  S  L  P  L  L  E  R  I  L  Q  *  P  L  P  V  R  L  K  S  A  I  L  I  S  T  P  S  Q  S  G  E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  K  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  G  E  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  Y  V  A  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  I  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  Q  A  M  *  S  D  E  E  M  C  L  F  P  M  R  H  P  C  G  E  P  Q  *  P  H  V  I  P  P  E  P  E  V  L  V  Q  K  T  L  E  A  L  G  L  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  V  I  P  H  S  V  L  V  N  F  P  H  P  P  L  L  L  L  L  L  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10000" stop="9719"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFAVAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDNAQNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVICGASIG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9759" stop="9565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMMPKSYVAPLLVDTQHVTATTFWRSLETDKSQTPHQTILLYPSCVVARDSQPENHKHPPIQHP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="9206" PGL_stop="9759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9206" e_stop="9759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="9206" e_stop="9759" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9206" stop="9759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATTAACAAGTACAGAATGAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGTGCCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTATAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTACATGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAATGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAATAGAGGCGCCACATATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  R  G  G  W  G  K  L  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  C  T  S  T  S  G  S  G  G  I  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  Y  M  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  M  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  A  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  *  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  V  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  *  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  W  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  W  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  I  E  A  P  H  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  R  *  L  L  H  R  L  K  K  *  *  E  K  G  R  M  G  K  I  N  K  Y  R  M  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  C  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  H  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  *  R  R  H  I  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9429" stop="9758"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HAATVAPRMDASLEIGTFPRLTTWPVMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVEWFGVEFVTYQFQGNAKMWWRSHVECQPIEAPHMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="10857" PGL_stop="10527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10857" e_stop="10527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="10857" e_stop="10527" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10857" stop="10527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATTAAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTTACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACGCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  L  H  *  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  L  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  A  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  L  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  R  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10726" stop="10529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPIKVTRQDLYTFSTITDSRTGVETRIGMSSNSQCKLRPLANAEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="11848" PGL_stop="11099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11848" e_stop="11099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="11848" e_stop="11099" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11848" stop="11254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11848" stop="11324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11777" stop="11099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAATAGCTAGCTAAACCAACAAAGCTCCTTATTTCTGAAACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCTACCATCACCCCATCCTTCGAAACCACATGCCCCAAGAAGGACATTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCTTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTAAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTGAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATTACTACAAATTCATAATGCCCATACCTAGTTTGAAAAGCAGTCTTTGGCACATCTGTTGCCCCTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATTATCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTTAGTTGTCTGTAGTCTATGCACATTCGAAAGCTCCCATCCTTTTTTTTCACAAATAATACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGCTTAGCAACACTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCAGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  I  A  S  *  T  N  K  A  P  Y  F  *  N  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  Y  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  L  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  *  K  A  V  F  G  T  S  V  A  P  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  L  S  M  R  G  R  G  Y  L  F  L  T  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  L  S  N  T  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  P  T  K  L  L  I  S  E  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  F  E  T  T  C  P  K  K  D  I  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  F  L  K  C  S  S  C  S  F  L  L  F  K  Y  T  N  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  L  L  Q  I  H  N  A  H  T  *  F  E  K  Q  S  L  A  H  L  L  P  L  S  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  Y  Q  C  E  E  E  D  T  C  S  *  P  L  P  Y  L  V  V  C  S  L  C  T  F  E  S  S  H  P  F  F  S  Q  I  I  L  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  V  P  L  T  L  L  T  P  Q  E  P  F  Y  K  G  V  *  K  W  G  E   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  N  S  *  L  N  Q  Q  S  S  L  F  L  K  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  L  P  S  P  H  P  S  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  E  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  Y  Y  K  F  I  M  P  I  P  S  L  K  S  S  L  W  H  I  C  C  P  Y  L  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  R  K  R  I  L  V  L  N  R  Y  L  I  *  L  S  V  V  Y  A  H  S  K  A  P  I  L  F  F  H  K  *  Y  W  S  T  P  R  R  C  T  W  S  N  K  A  F  A  *  Q  H  L  K  L  C  L  *  L  S  *  L  R  R  S  H  S  I  R  G  Y  R  N  G  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11561" stop="11346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRSQRDPDMAENPVHQAHESSRGIRKTKRHYYKFIMPIPSLKSSLWHICCPYLQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25454" PGL_stop="24778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25454" e_stop="24778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="25454" e_stop="24778" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25454" stop="24784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25385" stop="24778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGCAAATGTGTCTATTGAACGAGATAGGCAAGCCGTGAGATACATCAGGCAATCTCCTGCTAGGTGGAAAAATTTTCAAGAATGTTGTGAAGATGAAATCTTGCTAAAAAGTCTTTATGCTTGGATGTTCCTACAAGTTGGAATTCCACCTACATGATGTTGAGCAGGGTTATTGAATATGAAGGGGCAATTGTAGAGTACACCGATCGTGATATTGACTTGGCACTATATCTTAAGTTTGTTGATAAAAATTCTACAGGTACACTTTTGAGTAGTGATTGGGAGGGCGTAAAGAGAATTACAAAATTTATTGAAATGTTTTTAATCTTACTTTGAAGATATCTGGTTCACGACATGTTATATCAAATCTTCATTTTCTTGAAATTTCTCAAGTTGGTGTTTACTTGAATCAATTGCTATCAAATGAAGAACAAGTTTTGGCTAAGATAGCAGAAAATATAAAGGAGAAATTTGACAAATATTGGGGTGATGCTGAAAAAATGAATAAGATGGTTTTCATACCATGTGTTTTGGATCCTCGTCACAAATTTAGTACTCTTGGCTTTGCACTTAAGAAGATGTTTGCAGAAAAAGGGGCTGCTATAGAAAATGGTGTGCGAACGTACATGGAAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> R  S  K  C  V  Y  *  T  R  *  A  S  R  E  I  H  Q  A  I  S  C  *  V  E  K  F  S  R  M  L  *  R  *  N  L  A  K  K  S  L  C  L  D  V  P  T  S  W  N  S  T  Y  M  M  L  S  R  V  I  E  Y  E  G  A  I  V  E  Y  T  D  R  D  I  D  L  A  L  Y  L  K  F  V  D  K  N  S  T  G  T  L  L  S  S  D  W  E  G  V  K  R  I  T  K  F  I  E  M  F  L  I  L  L  *  R  Y  L  V  H  D  M  L  Y  Q  I  F  I  F  L  K  F  L  K  L  V  F  T  *  I  N  C  Y  Q  M  K  N  K  F  W  L  R  *  Q  K  I  *  R  R  N  L  T  N  I  G  V  M  L  K  K  *  I  R  W  F  S  Y  H  V  F  W  I  L  V  T  N  L  V  L  L  A  L  H  L  R  R  C  L  Q  K  K  G  L  L  *  K  M  V  C  E  R  T  W  K  L  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  E  A  N  V  S  I  E  R  D  R  Q  A  V  R  Y  I  R  Q  S  P  A  R  W  K  N  F  Q  E  C  C  E  D  E  I  L  L  K  S  L  Y  A  W  M  F  L  Q  V  G  I  P  P  T  *  C  *  A  G  L  L  N  M  K  G  Q  L  *  S  T  P  I  V  I  L  T  W  H  Y  I  L  S  L  L  I  K  I  L  Q  V  H  F  *  V  V  I  G  R  A  *  R  E  L  Q  N  L  L  K  C  F  *  S  Y  F  E  D  I  W  F  T  T  C  Y  I  K  S  S  F  S  *  N  F  S  S  W  C  L  L  E  S  I  A  I  K  *  R  T  S  F  G  *  D  S  R  K  Y  K  G  E  I  *  Q  I  L  G  *  C  *  K  N  E  *  D  G  F  H  T  M  C  F  G  S  S  S  Q  I  *  Y  S  W  L  C  T  *  E  D  V  C  R  K  R  G  C  Y  R  K  W  C  A  N  V  H  G  S  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   K  Q  M  C  L  L  N  E  I  G  K  P  *  D  T  S  G  N  L  L  L  G  G  K  I  F  K  N  V  V  K  M  K  S  C  *  K  V  F  M  L  G  C  S  Y  K  L  E  F  H  L  H  D  V  E  Q  G  Y  *  I  *  R  G  N  C  R  V  H  R  S  *  Y  *  L  G  T  I  S  *  V  C  *  *  K  F  Y  R  Y  T  F  E  *  *  L  G  G  R  K  E  N  Y  K  I  Y  *  N  V  F  N  L  T  L  K  I  S  G  S  R  H  V  I  S  N  L  H  F  L  E  I  S  Q  V  G  V  Y  L  N  Q  L  L  S  N  E  E  Q  V  L  A  K  I  A  E  N  I  K  E  K  F  D  K  Y  W  G  D  A  E  K  M  N  K  M  V  F  I  P  C  V  L  D  P  R  H  K  F  S  T  L  G  F  A  L  K  K  M  F  A  E  K  G  A  A  I  E  N  G  V  R  T  Y  M  E  A  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25137" stop="24778"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVFNLTLKISGSRHVISNLHFLEISQVGVYLNQLLSNEEQVLAKIAENIKEKFDKYWGDAEKMNKMVFIPCVLDPRHKFSTLGFALKKMFAEKGAAIENGVRTYMEAFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25355" stop="25116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLAKKSLCLDVPTSWNSTYMMLSRVIEYEGAIVEYTDRDIDLALYLKFVDKNSTGTLLSSDWEGVKRITKFIEMFLILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="34775" PGL_stop="35524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34775" e_stop="35524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="34775" e_stop="35524" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34775" stop="35487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34775" stop="35370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34775" stop="35300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34846" stop="35524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAATAGCTAGCTAAACTAACAAAGCTCCTTATTTCTGACACATTAGTAGGTGTTACCCAATTATTCACTGTCTCAATTTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATACCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTGCTCCTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAGATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGCAGCAGGGGCATTTGTAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTCCGAAAAGCAGTCTTTGGCACATTCGTTGCCCGTATTTTCAATTTATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAATAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAATAACACCGGAGCACCCTAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTTAGCAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCAGCGGAGCCATCCTATAAGGGGGTATAGAAATAGGGCGAGTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  I  A  S  *  T  N  K  A  P  Y  F  *  H  I  S  R  C  Y  P  I  I  H  C  L  N  F  R  R  I  H  H  H  P  I  L  R  N  H  I  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  R  Y  D  H  K  E  I  Q  I  W  L  K  N  L  I  H  Q  A  H  E  S  S  R  G  I  C  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  P  K  S  S  L  W  H  I  R  C  P  Y  F  Q  F  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  N  R  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  *  H  R  S  T  L  R  R  C  T  W  S  N  E  A  F  A  *  Q  L  L  K  L  G  F  *  L  S  *  L  S  G  A  I  L  *  G  G  I  E  I  G  R  V </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  K  L  T  K  L  L  I  S  D  T  L  V  G  V  T  Q  L  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  Y  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  D  T  I  T  K  R  S  R  Y  G  L  K  I  S  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  L  *  C  P  Y  L  V  R  K  A  V  F  G  T  F  V  A  R  I  F  N  L  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  I  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  N  T  G  A  P  *  G  D  A  L  G  L  M  K  P  L  L  S  N  S  *  S  W  A  F  N  S  L  N  S  A  E  P  S  Y  K  G  V  *  K  *  G  E   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  N  S  *  L  N  *  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  Y  S  L  S  Q  F  *  K  D  P  P  S  P  H  P  *  K  P  H  T  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  A  P  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  H  S  S  S  S  *  K  Q  Q  G  H  L  *  D  Q  K  T  S  L  Q  I  C  N  A  H  T  W  S  E  K  Q  S  L  A  H  S  L  P  V  F  S  I  Y  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  N  R  T  S  H  Q  C  E  E  *  D  T  C  S  *  *  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  I  T  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  A  T  L  E  V  G  L  L  T  L  L  T  Q  R  S  H  P  I  R  G  Y  R  N  R  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35039" stop="35278"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINRYDHKEIQIWLKNLIHQAHESSRGICKTKRHHYKFVMPIPGPKSSLWHIRCPYFQFMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34971" stop="35168"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSIDTITKRSRYGLKISFIKLMKAAGAFVRPKDITTNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="36789" PGL_stop="35397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36789" e_stop="36617"/>
            <exon e_start="35872" e_stop="35397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.002" e_score="0.925"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="36789" e_stop="36617" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.002">
            <gDNA_intron_boundary i_start="36616" i_stop="35873" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="35872" e_stop="35397" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36789" stop="36617"/>
              <exon start="35872" stop="35397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCATGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTTCAAG : AAATGGTTGACTTCGATGTGATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTATGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCTGGTTCGTAACATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAGGATTGTTTAGCGTTCTTGGCACATCTCAGGGATGATACTACCCAAGTACCTCCAATTGAGTCGGTTTCAATAGTCCGCGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGCATTGATCTTGAACCGGGACTCGCCCTATTTCTATACCCCCTTATAGGATGGCTCCGCTGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGCTAAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTAGGGTGCTCCGGT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  Q  V  C  H  P  T  L  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  I  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  S  R :   N  G  *  L  R  C  D  S  G  Y  D  L  A  F  S  K  F  C  N  L  G  L  *  C  *  N  Y  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  S  *  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  V  L  G  T  S  Q  G  *  Y  Y  P  S  T  S  N  *  V  G  F  N  S  P  R  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  R  *  R  Y  *  L  L  H  *  S  *  T  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  L  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  R  V  L  R  </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  H  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  M  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  L  V  R  N  I  S  F  L  R  A  K  K  M  V  S  K  D  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  P  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  L  A  L  F  L  Y  P  L  I  G  W  L  R  *  V  K  R  V  K  S  P  T  S  R  V  A  K  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  M  H  Y  P  G  M  P  P  N  F  V  S  V  H  K  S  G  F  A  V  L  *  R  G  *  G  Q  N  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  F  K  :  K  W  L  T  S  M  *  F  W  V  *  L  G  F  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  W  F  V  T  S  P  F  F  V  L  R  K  W  L  V  R  I  V  *  R  S  W  H  I  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  Q  *  S  A  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  Q  I  E  I  L  T  S  A  L  I  L  N  R  D  S  P  Y  F  Y  T  P  L  *  D  G  S  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  *  G  A  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36788" stop="36617"/>
                    <exon start="35872" stop="35481"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFHALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTMTLAKPGTDPLVWEGDYTSNLVRNISFLRAKKMVSKDCLAFLAHLRDDTTQVPPIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGLALFLYPLIGWLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="35765" PGL_stop="36845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35765" e_stop="36845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="35765" e_stop="36845" e_length="1081"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35765" stop="36095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36056" stop="36845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36132" stop="36829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCATAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATCACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTTCTCCCCATAAATGTTATAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATATGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACAAAAAGATTACCTGTGATAACAACATCTGATGTCTCCGCTTCCGACCACCCAGGGAAAGCGTAACAATGGGCCCTATCGCCTGCTTGCCCGTTGCCCCTACCATGTTGCGCTGCAGTAGTTCCCATTTGTCCGTTACCCCGGCCGTTTTGGTGACCACCATTACCTCGGCCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTTGGACAGTTTCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTGGAGTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGGGTAACCTCCTGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCTGGCTTCACCCCTTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTCTGACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCATGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCTAAGTCCAGGGGATATACTT</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  *  F  *  H  Y  N  P  R  L  Q  N  L  E  K  A  K  S  Y  P  E  S  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  F  S  P  *  M  L  *  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  K  K  I  H  M  K  I  W  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  Q  K  D  Y  L  *  *  Q  H  L  M  S  P  L  P  T  T  Q  G  K  R  N  N  G  P  Y  R  L  L  A  R  C  P  Y  H  V  A  L  Q  *  F  P  F  V  R  Y  P  G  R  F  G  D  H  H  Y  L  G  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  L  D  S  F  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  G  N  L  L  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  F  L  M  S  M  P  W  *  S  H  L  A  S  P  L  P  P  L  S  R  S  L  P  L  L  E  R  I  L  P  *  P  L  P  V  R  L  K  S  A  I  L  T  S  T  P  S  Q  N  G  E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  K  S  R  G  Y  T  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  K  P  S  H  T  Q  N  H  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  S  P  H  K  C  Y  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  R  R  Y  I  *  K  Y  G  A  R  V  K  *  Y  R  S  H  T  I  T  N  K  K  I  T  C  D  N  N  I  *  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  A  C  L  P  V  A  P  T  M  L  R  C  S  S  S  H  L  S  V  T  P  A  V  L  V  T  T  I  T  S  A  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  W  T  V  S  P  N  M  S  S  L  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  W  V  T  S  *  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  H  G  E  V  I  W  L  H  P  F  H  L  Y  H  E  V  Y  H  F  L  K  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  F  *  P  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  M  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  L  S  P  G  D  I  L </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  I  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  P  I  N  V  I  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  M  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T  K  R  L  P  V  I  T  T  S  D  V  S  A  S  D  H  P  G  K  A  *  Q  W  A  L  S  P  A  C  P  L  P  L  P  C  C  A  A  V  V  P  I  C  P  L  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  G  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  *  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  *  V  Q  G  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36123" stop="36458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLRFRPPRESVTMGPIACLPVAPTMLRCSSSHLSVTPAVLVTTITSATTSSRITASTMTTSTSSYWGSITLFWTVSPNMSSLPTSITLSGVKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35896" stop="36156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLPINVIRQDLYTFSTITDSPTGVETRIGMSSNSQCKLRPVANEEDTYENMEPGSNNTEAIQSQTKRLPVITTSDVSASDHPGKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="37416" PGL_stop="36863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37416" e_stop="36863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="37416" e_stop="36863" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37416" stop="36863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGATACCTCCAGTGTTTTCTGCACCAGCAACTCAGGTTCCGGAGGTACAACATGCAGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGCCTATAATGACAAATGATCAGAATGAACTTTTCAGTAAGTTCTTGAAATTGACACCTCCAGTATTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTTGAATGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGAAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  T  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  N  S  G  S  G  G  T  T  C  S  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  Y  N  D  K  *  S  E  *  T  F  Q  *  V  L  E  I  D  T  S  S  I  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  M  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  K  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  I  P  P  V  F  S  A  P  A  T  Q  V  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  N  E  L  F  S  K  F  L  K  L  T  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  E  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  Y  R  M  R  D  C  H  P  N  L  P  *  R  *  S  I  R  F  S  L  I  L  A  G  Y  L  I  R  A  R  Y  L  Q  C  F  L  H  Q  Q  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  V  *  L  Q  G  L  *  *  Q  M  I  R  M  N  F  S  V  S  S  *  N  *  H  L  Q  Y  S  R  V  L  N  L  R  M  P  T  I  F  W  L  N  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  E  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37415" stop="36864"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEEGENEQVQNEGLPPQPTLEMINQVLAYLSGLSDQGQIPPVFSAPATQVPEVQHAATVAPRMDASLEIGTFPRLTTGPIMTNDQNELFSKFLKLTPPVFKGAESEDAYDFLVECHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="47691" PGL_stop="44585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47691" e_stop="47664"/>
            <exon e_start="45287" e_stop="45197"/>
            <exon e_start="45060" e_stop="44585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.943" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47691" e_stop="47664" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.943" acc_prob="0.847">
            <gDNA_intron_boundary i_start="47663" i_stop="45288" i_length="2376"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45287" e_stop="45197" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45196" i_stop="45061" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45060" e_stop="44585" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47691" stop="47664"/>
              <exon start="45287" stop="45197"/>
              <exon start="45060" stop="44585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGCCGTCGCCGGCAGTCTTCGCTGAG : AGCAAGACACCTCTTTGCACAAATTATGCACTATTGCTAGTAAGGTGGGAAAAAAATCAAATCAGAAAAAGAAAATCAAACATGAATCAAG : ATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATTGTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTGCTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGATTGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGAAGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCTAGATGTTCCTTTAAACCACCTGAT</gDNA_template>
            <first_frame> F  A  V  A  G  S  L  R  *   : E  Q  D  T  S  L  H  K  L  C  T  I  A  S  K  V  G  K  K  S  N  Q  K  K  K  I  K  H  E  S  R :   W  S  K  R  C  G  *  G  G  H  R  R  *  N  *  C  P  T  K  K  C  Y  *  L  Y  P  *  A  L  A  Y  *  R  S  C  K  N  L  Y  I  V  Q  K  L  E  I  H  L  E  R  A  S  K  T  G  A  V  L  R  V  L  *  *  V  N  R  *  V  *  I  Q  I  Q  R  S  S  R  R  D  Y  V  T  A  Y  G  Q  D  C  A  V  *  S  *  R  *  S  R  R  F  S  F  I  Y  S  Y  *  *  V  G  S  L  C  H  Q  K  *  C  Q  E  A  T  P  *  N  F  *  Y  *  *  S  *  L  C  T  A  S  L  C  I  S  L  F  N  P  D  T  V  E  T  C  *  M  F  L  *  T  T  *  </first_frame>
            <second_frame>  S  P  S  P  A  V  F  A  E  :  S  K  T  P  L  C  T  N  Y  A  L  L  L  V  R  W  E  K  N  Q  I  R  K  R  K  S  N  M  N  Q   : D  G  V  S  V  A  V  E  G  D  I  E  D  R  I  S  V  L  P  R  N  V  I  D  C  I  L  E  L  L  P  I  K  E  A  A  K  T  C  T  L  S  K  S  W  R  Y  I  W  S  E  L  P  K  L  V  L  Y  Y  E  F  C  D  E  L  I  D  E  S  E  S  K  F  R  E  V  V  D  G  I  M  L  L  H  M  G  K  I  V  Q  F  D  L  D  V  R  V  E  D  L  A  S  Y  T  A  I  D  R  W  V  L  Y  V  T  R  N  S  V  K  K  L  H  L  R  I  S  N  I  D  D  R  S  Y  A  L  P  P  C  V  F  H  C  S  T  L  T  Q  L  K  L  A  R  C  S  F  K  P  P  D </second_frame>
            <third_frame>   R  R  R  R  Q  S  S  L  R :   A  R  H  L  F  A  Q  I  M  H  Y  C  *  *  G  G  K  K  I  K  S  E  K  E  N  Q  T  *  I  K  :  M  E  *  A  L  R  L  R  G  T  *  K  I  E  L  V  S  Y  Q  E  M  L  L  I  V  S  L  S  S  C  L  L  K  K  L  Q  K  L  V  H  C  P  K  A  G  D  T  F  G  A  S  F  Q  N  W  C  C  I  T  S  F  V  M  S  *  *  M  S  L  N  P  N  S  E  K  *  *  T  G  L  C  Y  C  I  W  A  R  L  C  S  L  I  L  T  L  E  *  K  I  *  L  H  I  Q  L  L  I  G  G  F  F  M  S  P  E  I  V  S  R  S  Y  T  L  E  F  L  I  L  M  I  V  A  M  H  C  L  L  V  Y  F  T  V  Q  P  *  H  S  *  N  L  L  D  V  P  L  N  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47690" stop="47664"/>
                    <exon start="45287" stop="45197"/>
                    <exon start="45060" stop="44585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSPAVFAESKTPLCTNYALLLVRWEKNQIRKRKSNMNQDGVSVAVEGDIEDRISVLPRNVIDCILELLPIKEAAKTCTLSKSWRYIWSELPKLVLYYEFCDELIDESESKFREVVDGIMLLHMGKIVQFDLDVRVEDLASYTAIDRWVLYVTRNSVKKLHLRISNIDDRSYALPPCVFHCSTLTQLKLARCSFKPPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="121747" PGL_stop="122132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121747" e_stop="122132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="121747" e_stop="122132" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121747" stop="122132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAGTTTTTCTTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTAGTATATGCATAAAATCAGGTATGTATTTTCTAGAATATTTTATGATTTAGAATAAAAATAATATTCAGTCACTAACAATTATCAAGAACCGAAGACATATACTACTATTGGTTGAATATAACATGCTATACAAAACTTTTTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCATGTTGTACTTCAGTCTATCATACCGTTGGTTAAGGGTAAGACGATGGATTCAAGTTTTATCG</gDNA_template>
            <first_frame> F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  S  F  S  L  T  H  V  L  V  D  L  V  M  R  I  K  V  V  Y  A  *  N  Q  V  C  I  F  *  N  I  L  *  F  R  I  K  I  I  F  S  H  *  Q  L  S  R  T  E  D  I  Y  Y  Y  W  L  N  I  T  C  Y  T  K  L  F  K  *  K  K  V  *  N  F  N  S  M  S  L  N  V  I  L  I  V  L  K  D  S  K  G  E  S  C  C  T  S  V  Y  H  T  V  G  *  G  *  D  D  G  F  K  F  Y   </first_frame>
            <second_frame>  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  V  F  L  *  L  M  F  W  L  I  S  L  *  E  S  R  *  Y  M  H  K  I  R  Y  V  F  S  R  I  F  Y  D  L  E  *  K  *  Y  S  V  T  N  N  Y  Q  E  P  K  T  Y  T  T  I  G  *  I  *  H  A  I  Q  N  F  L  N  R  R  R  Y  K  I  L  I  A  *  V  *  M  L  F  *  L  F  *  K  T  Q  R  V  S  H  V  V  L  Q  S  I  I  P  L  V  K  G  K  T  M  D  S  S  F  I  </second_frame>
            <third_frame>   L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  *  F  F  F  N  S  C  F  G  *  S  R  Y  E  N  Q  G  S  I  C  I  K  S  G  M  Y  F  L  E  Y  F  M  I  *  N  K  N  N  I  Q  S  L  T  I  I  K  N  R  R  H  I  L  L  L  V  E  Y  N  M  L  Y  K  T  F  *  I  E  E  G  I  K  F  *  *  H  E  F  E  C  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  S  L  S  Y  R  W  L  R  V  R  R  W  I  Q  V  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0189E08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="125147" PGL_stop="124471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125147" e_stop="124471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="125147" e_stop="124471" e_length="677"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125147" stop="124471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125147" stop="124744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGACACCTCGATTGTTTCAAGGATTTTCATATAACCTTCATTGTCTAGCTAGACATTAAAATTATTCATTACATGCATTCAAGTTTTTCATATGTTGCCAGATCAAAACAAACCTCATTGCATCCACAAAAAAAAAAGAACATCTCCAATAATGTCAGGATTTTTACGATAAACCTGTATGCCCCAAGGCACAAACCGTATTTGATATCTTACGGTTATAGTATCGCATATTAATTTATTTGTACCCCACTGACATTATACCTTGATTTATGGACTACCAGTCCAAAATGTCACTTTTCTAAGTGAAATAAAATATACTTGAATTGTGCATTTTACTTGTCCAACCATTTATCTGTCCACACTATATGACAAATTTAAATTCAAGATCCTCGTCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATATCATCGACGGTTATTTGATATCGATTCCAACAAGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGTACCTGAACCTTTTTCAAGATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTTGCCTCATTATCATGACCATATTGATCATTTGCTCATTCCTTCTTCAAGGAATTTTATATTTGAAATCGATTGGTCTATTACGCTTCCGACGTATCATAGACTCTG</gDNA_template>
            <first_frame> F  R  H  L  D  C  F  K  D  F  H  I  T  F  I  V  *  L  D  I  K  I  I  H  Y  M  H  S  S  F  S  Y  V  A  R  S  K  Q  T  S  L  H  P  Q  K  K  K  N  I  S  N  N  V  R  I  F  T  I  N  L  Y  A  P  R  H  K  P  Y  L  I  S  Y  G  Y  S  I  A  Y  *  F  I  C  T  P  L  T  L  Y  L  D  L  W  T  T  S  P  K  C  H  F  S  K  *  N  K  I  Y  L  N  C  A  F  Y  L  S  N  H  L  S  V  H  T  I  *  Q  I  *  I  Q  D  P  R  H  N  L  Y  H  *  A  L  P  H  I  K  D  I  I  D  G  Y  L  I  S  I  P  T  R  H  N  L  S  R  S  L  H  F  S  L  F  Q  V  P  E  P  F  S  R  F  Y  E  V  L  C  Q  C  A  L  L  *  H  L  P  H  Y  H  D  H  I  D  H  L  L  I  P  S  S  R  N  F  I  F  E  I  D  W  S  I  T  L  P  T  Y  H  R  L   </first_frame>
            <second_frame>  S  D  T  S  I  V  S  R  I  F  I  *  P  S  L  S  S  *  T  L  K  L  F  I  T  C  I  Q  V  F  H  M  L  P  D  Q  N  K  P  H  C  I  H  K  K  K  R  T  S  P  I  M  S  G  F  L  R  *  T  C  M  P  Q  G  T  N  R  I  *  Y  L  T  V  I  V  S  H  I  N  L  F  V  P  H  *  H  Y  T  L  I  Y  G  L  P  V  Q  N  V  T  F  L  S  E  I  K  Y  T  *  I  V  H  F  T  C  P  T  I  Y  L  S  T  L  Y  D  K  F  K  F  K  I  L  V  T  I  Y  I  I  E  R  Y  L  I  S  K  I  S  S  T  V  I  *  Y  R  F  Q  Q  D  I  T  Y  R  D  L  F  I  F  H  Y  F  R  Y  L  N  L  F  Q  D  F  M  K  C  Y  V  N  V  L  F  Y  S  T  C  L  I  I  M  T  I  L  I  I  C  S  F  L  L  Q  G  I  L  Y  L  K  S  I  G  L  L  R  F  R  R  I  I  D  S  </second_frame>
            <third_frame>   Q  T  P  R  L  F  Q  G  F  S  Y  N  L  H  C  L  A  R  H  *  N  Y  S  L  H  A  F  K  F  F  I  C  C  Q  I  K  T  N  L  I  A  S  T  K  K  K  E  H  L  Q  *  C  Q  D  F  Y  D  K  P  V  C  P  K  A  Q  T  V  F  D  I  L  R  L  *  Y  R  I  L  I  Y  L  Y  P  T  D  I  I  P  *  F  M  D  Y  Q  S  K  M  S  L  F  *  V  K  *  N  I  L  E  L  C  I  L  L  V  Q  P  F  I  C  P  H  Y  M  T  N  L  N  S  R  S  S  S  Q  F  I  S  L  S  A  T  S  Y  Q  R  Y  H  R  R  L  F  D  I  D  S  N  K  T  *  L  I  E  I  S  S  F  F  I  I  S  G  T  *  T  F  F  K  I  L  *  S  V  M  S  M  C  S  F  I  A  L  A  S  L  S  *  P  Y  *  S  F  A  H  S  F  F  K  E  F  Y  I  *  N  R  L  V  Y  Y  A  S  D  V  S  *  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0189E08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124693" stop="124472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRFQQDITYRDLFIFHYFRYLNLFQDFMKCYVNVLFYSTCLIIMTILIICSFLLQGILYLKSIGLLRFRRIIDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="124752" PGL_stop="125432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124752" e_stop="125432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="124752" e_stop="125432" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124752" stop="125432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124753" stop="125308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124757" stop="125211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124801" stop="125384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAGGATCTTGAATTTAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGACAAGTAAAATGCACAATTCAAGTATATTTTATTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTAATATGCGATACTATAACCGTAAGATATCAAATACGGTTTGTGCCTTGGGGCATACAGGTTTATCGTAAAAATCCTGACATTATTGGAGATGTTCTTTTTTTTTTGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAACTTGAATGCATGTAATGAATAATTTTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTGCAATAAAGCTTCAAGAATCCTTATATAGATTGAAATGGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATTGTCCTTGTATTTTTATGAAAAGGTTTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGATAATTTGACAAATGAAATATTTGTCTAACAGTGCACACACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCACATGCATTGAGTAGCCCAGANTGATTGTGCGGCCGCCAAAC</gDNA_template>
            <first_frame> T  R  I  L  N  L  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  I  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  I  C  D  T  I  T  V  R  Y  Q  I  R  F  V  P  W  G  I  Q  V  Y  R  K  N  P  D  I  I  G  D  V  L  F  F  L  W  M  Q  *  G  L  F  *  S  G  N  I  *  K  T  *  M  H  V  M  N  N  F  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  K  E  T  F  A  I  K  L  Q  E  S  L  Y  R  L  K  W  S  R  K  K  K  G  T  K  E  *  P  *  L  S  L  Y  F  Y  E  K  V  L  V  R  Q  N  F  V  L  T  Y  R  L  I  I  *  Q  M  K  Y  L  S  N  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  T  C  I  E  *  P  R  L  I  V  R  P  P  N </first_frame>
            <second_frame>  R  G  S  *  I  *  I  C  H  I  V  W  T  D  K  W  L  D  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  *  Y  A  I  L  *  P  *  D  I  K  Y  G  L  C  L  G  A  Y  R  F  I  V  K  I  L  T  L  L  E  M  F  F  F  F  C  G  C  N  E  V  C  F  D  L  A  T  Y  E  K  L  E  C  M  *  *  I  I  L  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  K  K  L  L  Q  *  S  F  K  N  P  Y  I  D  *  N  G  Q  G  R  K  R  V  Q  K  N  D  P  N  C  P  C  I  F  M  K  R  F  W  *  D  K  I  L  S  *  P  T  D  *  *  F  D  K  *  N  I  C  L  T  V  H  T  H  *  K  V  L  M  Q  F  Y  M  D  K  S  H  A  L  S  S  P  D  *  L  C  G  R  Q   </second_frame>
            <third_frame>   E  D  L  E  F  K  F  V  I  *  C  G  Q  I  N  G  W  T  S  K  M  H  N  S  S  I  F  Y  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  N  M  R  Y  Y  N  R  K  I  S  N  T  V  C  A  L  G  H  T  G  L  S  *  K  S  *  H  Y  W  R  C  S  F  F  F  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  A  C  N  E  *  F  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  E  R  N  F  C  N  K  A  S  R  I  L  I  *  I  E  M  V  K  E  E  K  G  Y  K  R  M  T  L  I  V  L  V  F  L  *  K  G  F  G  K  T  K  F  C  L  D  L  Q  I  D  N  L  T  N  E  I  F  V  *  Q  C  T  H  T  E  K  F  *  C  N  F  I  W  I  N  H  M  H  *  V  A  Q  I  D  C  A  A  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0189E08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 337 chains have been computed
$ 
$ memory statistics:
$ 74656 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 2195 bytes was the average size of a spliced alignment
$ 23448 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1465 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 425 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:57:15
-->
