<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 00:28:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319483" ref_strand="+" ref_description="SGN-U319483        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | ethylene-responsive transcriptional coactivator, putative, similar to ethylene-responsive transcriptional coactivator (Lycopersicon esculentum) gi:5669634:gb:AAD46402 | chr3:21718253-21719881 FORWARD | Aliases: T20N10.30, T20N10_30(evalue: 2e-60, score=229) genbank/nr: multiprotein(evalue: 1e-69, score=266)">
      <seq>aagcagtgataaggagatatttttcaaaaaaaaaaaagatggccggattgtcacaagattgggagccggtggtgattcgcaagaaagcgccgaccgccgccgcacggaaagatgagaaagcagtcaacgccgcccgtcgagccggtgccgaaatcgaaaccgtcagaaaagctactgctgggtcaaacaaggctgcctctagtagcacaacgttgaacacgagaaagctggatgaagatactgagaatctgtcacatcaaaaggtacctactgaactgaagaaagcgattatgcaagctcgacaggataagaagcttactcagtctcaacttgcccaattgataaacgaaaaaccacagatcattcaagagtatgaatctggaaaggcaattccaaaccaacagataatttctaaactggagagagctcttggtgcgaaacttcgtggaaagaaataaactgcaaaagtgatggtggtggtggtggggtgtgtgtgtgtgtgtgaaccttttgaacgtctacatcgtttgggttctaagtgtggtcatgtacatgagccttttgaatgttttctttagccagtaaggtggttcttgtgtctggattcgggacgttactttcgttgttaaaactgaatgtttttcctgtcgaaaatggatgtgcttgctcttgctagaaaaaaaaaaattgcaattaggacaattcagcaaatttgattatccagacatcttaatcttaatgaacatgattgttcacaagatataaagtttattttgccataccaacgtcctttgcatttaggaattgttaagttactaattcagattaaaagatgagaattggttaatgaccttaaaatagatcagttacattatgtaattgtatttctttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="4050" stop="7218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4350" g_stop="4520" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5698" g_stop="5781" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="255" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6144" g_stop="6226" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="338" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6362" g_stop="6918" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="895" r_length="557" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U319483" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4350" e_stop="4520"/>
          <exon e_start="5698" e_stop="5781"/>
          <exon e_start="6144" e_stop="6226"/>
          <exon e_start="6362" e_stop="6918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAGGTTCATATACAACATGCTCTAATCTTCTTATCTCAGTTTTATTGATTTTCTGAGTAGCTTTTTACGATGAGTTATACTGTATCTGCTCCTTTTTTTTTCATTCCCGATCGGCTTTGCTTGGTACGAATTAGGGCTTTTAATTTTCCGGTCAGTTTAACGGCCAATTTCCCCTTTATCTATGGTTTCCTGTTTACATATAGCTAATTTCATTTCATGCTCAAATTGAATAACTCAACTCCTAATAAAACACTTCTGAATAAAAAATATTTGAATTATTTTTTTTGCACATTAAATTAACTGATTAAAATATACTCACAGCCTCAAGTAGAAAATGTATGTGGTTTTATAGATGTGTATAATCAAGGAAGAAACATATTTTATGTGGTTAGGAAGTTATTAATACACGATTGAGAACACACTGCGAGGCGAGGCGCGAAAGGTTGCTTCATTTAGTAAGATAAGGCAAGATGCAAGGGTGTAGTAGCTGCGCGGAAGCTGTTGCGCCCTTAGTTAATAGCAAAACTTACTCTTCCTGGTTTTGGTTTTATGACGAATAGAAAGTTCAATGTGCAATAGATTTCCTTATTTATAACTTAACTGCTTTTTGTGGTTCGGTCGTTCGGAGTTGCCTGTTAGTATCCTAAAGTCCTATATGAGGAGCATCTTGTATATAGTCTTCTACCAATGAAGCCAAATTCCCCCTTCGTTTTTCTTCTCTATTTTATATTACGAAAGGGAGGCTCCATGTTACTTTTATGTGCATTTTTCTTTTCTGCTTTGTTTGCCAAGAGAGACTAGTAATCTGAATTTTATATTGGTAAAGAGGTCCGGAGTGATATGCACGTCGCTTTGTCATTGCATGTTGATTTCTCTTGATATAACTCAAGTTGGGCAGTCTGGATCGGGAAGGAAATGACTTGTTAATGTTGAAATGGGCCTACTTTTATGTAGAATGATAGTATCTCTTTATCTGGGTTAATACCAATCCTTTTGACATTTCATGAATATTTTTGTCGTAGTTTATATATATTACAGTTTCATATGTTCCATGTTTTGCCAATTGCTAGATGGTGTGAAACTTCATTTTTGGTGTGATATTTTTTTGTTGACATCGATCCTTTAGTTGTGAAAATGAGCAAAATGTTTTACGCTCATGATATCTATTTTCTGAATGCAGCTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCACGTAAGTTTGAGTTGACGTTATAACTGAAAGAGAATCTGTCACGTAAGTTTGAGTTGACATTATAACTAGAAACACTTCTATAGAAACAATGTGTTTATAGAGCGTTTCTGTGCTCTGACCTGTTATACACCGTGATTTGAACTGTGCGCCACTAGCTCTAGGAATTTCTCGGTGATCAAAAGAAGAAGAGCACTTTTTTTCTCTGTGAGTCCAAGTCATGCTTACATCCCAACTTGACAAAGCGTCCTTTTAACGGTTTCTCCATCAGGCAAATACCAATAGGTTTGCCACTGGAAAAAACCCCCAGATGTTTTATCTTTTGCTGATGACATTGGGTGTTAATATCTGTTTTTTGTTCTCAGATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAAGTAACTCTCTCTCTCTCTCTCTCTTACGCGCTTATCTTTTTTGTTATAAATATAGCAATCTACATATAGATAGATTCAAGAGAAAGGCTTAATTCATTGTATCGATATAATTTTGGTAATCCCTTTGTTGCGCAGTTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</genome_strand>
        <mrna_strand>AAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC..........................................................................................................................................................................................................................................................................................................................................................................ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA.......................................................................................................................................TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGAAAAAAAAAAATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346572" ref_strand="+" ref_description="SGN-U346572        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-31, score=89.7)">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="17817" stop="19071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18117" g_stop="18771" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U346572" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18117" e_stop="18771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAT-ATTAATCAGGTTCTTGCTTATTTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGATTGACTACAAGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTTCTGTCTTCAAGGGTGCTGAATTTGAGGATGCTTATGATTTTTTGGTTGATTGTCATGAGCTGCTATATAAGATGTGCATAGTGAAACGATTTGGTGTTGATTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTCTCTAGCTTGTATATGGAGAAGTATATGCCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTCGAGCAAGGCAGGGTGTCGGTTACTGCGTATGAGGCTAAGTTTCGTGTATTATCTAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTATCT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="19981" stop="19050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19682" g_stop="19351" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19682" e_stop="19351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGTCCCAGGCTTGGCCAATGTCACAGTTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAAAATTACATCTAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCAGCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATTAGGAAGATAAATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAAACAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATC-AAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335936" ref_strand="+" ref_description="SGN-U335936        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-62, score=215)">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="19081" stop="20342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19381" g_stop="20042" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U335936" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19381" e_stop="20042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATTTATCTTCCTAATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGCTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTAGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAACTGTGACATTGGCCAAGCCTGGGACAGATTTGTTAGTGTGGGAGGGTGACTACACTCCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCAAGATGTGTTTCCGGCAGACCTTCCTGGTATACCACCAGATAGAGATATTGATTTCTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAAGTTCAAAAGTTGTTAGGGAAAGGCTTTATTAGACCAAGTGCATCCTCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGA-CTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328094" ref_strand="+" ref_description="SGN-U328094        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-65, score=251)">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="21785" stop="20599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21485" g_stop="20899" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U328094" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21485" e_stop="20899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336382" ref_strand="+" ref_description="SGN-U336382        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-75, score=284)">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="22230" stop="21089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21930" g_stop="21389" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U336382" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21930" e_stop="21389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCATGCAATGTTCTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCCGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATATGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTAAGCAACAAAATCAACAATGTCACGTTTCATCCTACTCCACCAAAAATGTTGTTTTAGATCACGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATAC-CCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339613" ref_strand="+" ref_description="SGN-U339613        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 1e-44, score=182)">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="27179" stop="26030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26875" g_stop="26330" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U339613" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26875" e_stop="26330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCTTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAG--AA-ATAT--TTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339612" ref_strand="+" ref_description="SGN-U339612        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-34, score=146)">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="27078" stop="26097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26765" g_stop="26397" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U339612" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26765" e_stop="26397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332943" ref_strand="+" ref_description="SGN-U332943        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:12587406-12588456 FORWARD | Aliases: None(evalue: 7e-76, score=280) genbank/nr: gi|15144515|gb|AAK84482.1| unknown [Lycopersicon esculentum](evalue: 5e-123, score=443)">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="28479" stop="27109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28171" g_stop="27409" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U332943" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28171" e_stop="27409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTATCTCATAA-TTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGCCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAAATTGAATATTTGACGGTAAAAGATCCACTTGAGTTGTGGACTGACTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCCCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTACAGCAACAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATTTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327156" ref_strand="+" ref_description="SGN-U327156        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: None(evalue: 8e-97, score=350) genbank/nr: pathogenesis-related(evalue: 5e-97, score=357)">
      <seq>taaaaacttagaaatatggctagtgagaaggaaaaaattaaaattacaagtgataagtataggctattcttgcatgaagatcaagctgctgctgaaggaaccatccaatggagacatggtgatgctccaagttatggaagtgttaataaactctttgaagaaggaaggactaaggtttggccagaaggatctcttgaagaaacagtacaaaatgctataaaatcatgggaaatggaactttcacataagactagagtaaaagactttaggacaattaatcctcaaaaattcaagctcttcgtaaatggaagagacggattgtccgcggaagagacgttgaaagtgggaagctacaatgcgctattgaagagttcaatgccaaatgaattcaaatattacaaagcagatgaagagacatttgaatcatcccacaatgcttttagatcagcttttccaagaggatttgcttgggaagtgatcagtgtatacacagggccaccaattattacatacaaattcagacattggggtttctttgaaggtccatttaaaggacatgcccctactggcaacatggtccaattctatggccttggtatattgaaggttgatgaatcactaagagcagaggatgtagaggtatattatgatccaacggaactttttggtgaactactcaaaggaccaaaaatttctgaatctaatgttgagcaccactagtcatggtttattgattttatgaagtttttttttttatgttttttcataaaataaactttctctgtttggatcgcacaatattacaatacaatgttacaaagtttgtttggattgatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="38213" stop="33618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37913" g_stop="37740" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37739" i_stop="37202" i_length="538">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37201" g_stop="37069" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="307" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35481" g_stop="35183" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="606" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35182" i_stop="34151" i_length="1032">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34150" g_stop="33910" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="847" r_length="241" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U327156" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37913" e_stop="37740"/>
          <exon e_start="37201" e_stop="37069"/>
          <exon e_start="35481" e_stop="35183"/>
          <exon e_start="34150" e_stop="33910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAGGTTTGTGCATATGTATTTCTTTCGTCCTAATTTACGTGATATTTTTTAGATTTCAAAAGTTAAATAAATATTTACTTAATTACTAATAATCTTTTATATGCCTTATTATTATTTTGAATTGTTAAATATTGTGATTTATAGTCCATCCAGACTATTTTACATCTTGTGTCAAATAATCCTTATTTATTGATCCCAATTTGTTTTTGTTTTGTTTCAATTCATCTCCTTATTTTTTTCAATTAAGGATAAAAATGAAATCTCATAATTAATTATTTCTTAATTTTTTAAAAATGACAATCAATCTTGGATTAAGAAGTAGGAGAAATAAGATAAATTGAAGGGGGTAATATTTTTTTTTTACATAATTTTTAAATACAAAAATTTTAGTATAAATTTTATAGCATTAAAAGCTAATTATTATATTAGAGATTATGAAAAAAAATAATAAGAAGTGTATTTATGTAATTAAAGTAGTAGTATTTATCATCTTTCATGTAAATACAATTTGTTTTGTTTTGTTTTATGATTTTGAAATCAGGTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATGGTAAGACTTGCAAAATACTATTCTATTCAGCAACAGAATAAATAATCTAGGCCAGAAATTTATCTGTTTAAATGTAATTTTCATTATTATGAGATTTAATGAAGTAAAATAAATTATAAATTTAAACACATGTCATGTATGTATTGACTTGGTGTAAACATTCGGGGTGTGTTTGGTATGAAGGAAAATGTTTTATAGGAAACAAGTAGATATTTGATTTATTTTCTCTTGTTTAATTTGTGAGTAGAAAATATTTTTTGAAAAATATTTAGTGTTTGATTTTTGAATAAAATGTTTTTGAGAAATATCTTTTATTTTTTACTAAAGTATAAAATAATTTTTGAAGTTGAAATTAGTTTTTAGAAACAAACTTAAAATTCTTTTTCTTTGTGGGTGGGGGGCTAGTAAGGGATAGTTGTAGGGTGGGGGGAATCTAGGGTAGGGATGAAAAAATAAAATTTGAAGTTTAAAATATGTTTTAAGAACAAATTCAATTTCTTTTTGGGTTGTAGGGGGGACTGGGGTAGTAGGGGTGAGTGGGTGGGGGGTCGGAGAGCACGGGGTAGTTTAAAAATGAATTTTAAAAGTTTGAAAATATTTTTAAAAAACTAACTTTAATTATTTTTTATTGGATGGGGGTGGTAGGGGGATCAACGATGGGTGAAAAAAATAAATTTTGAAGTTAAAAATATTTTTTTTAAAATAAACTTAAGTTTTTTAGAGATAGGGGGGCTGGTAGGGGTGGATGGGTGGGAGGCAGGTAGGAGGGTGGTTTGGGGGTCTGGTAGGATGGGGTTGGGGTTGGAAGAAAGTTTTGAAAAAAGTTTATCTTAAATTTGAGGAAAATAAGTTAATTTGAAAAACATTTTTCAAAATATTTGACCAAATCAAACATGAGAAAATTGAAAAAATATTTTCTTTCATACCAAACACACCTTCGGTGCGGATAAATTTTACCCATAATTTAGCTAAATTGTTCTTTTATTTAATATTTCTTTTAGCAAACGTAAAAGAAAAAATATAACAAATAAAATGAAACCAAAAATTCACATTCTCGGCTGCTTCCGGTCCGATAGGTCGGTCGCCCTCTAGCCAGTGACTAACCCAGCTATGGAGCTAGGTGTATACCGCCACGTCGAGACTCTCATTCAAAAGTGCAAATAAGCAAAGAAAATTCTCCGCTCAAACTAATTTCATATTGGTAATATCAATCAATACTTTTTTATACAAATTTATTCAAATTTATATATGGGGATAATTTTAAAATTATTCAATCATATTGAATTGAATAGTATAATCATTTCTTCATTAAATAAAAGAGTGTACTGATAACATTCTTTTTCCCTCAATGAAATGCCTTCACATCACCACATATATCTTTAATCATATATGTAGTAGGTAGTGATACATATAGGCCCATTATAACCCCACTATGATCATCATGTTCTATAGTATCTATATTCTTAAAATAATATAGTATTTTGTTTACATATTAAACACACAAATGAATTATTTTTTACAAAAATATCTTTTTTTTTTCTTTATTTATATCAATTTTACTTTATGTTTTGCGATGAGATGGGACAGGAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAGGTCTCTCTCTATTCCTCTTACATACTTTTACACTATCGTAAAATAATATGCAGATATATCCTCTATCATATTTTTGGGATATTGGTACTTCTGTCGTTCAAGAACTAGAACATATACGTCATTCACTCTAACGGCAGACTAAATAAAAACACGTGGCACAATCTTATTCGTCGATATGATATTTAATAAATGTCAGGTCATTGGATAAAGATTACGACATGTGTATGTCCGTTAGTATAAAAAGTATATATGTTCTACTTTTTGGGCATAAGGGGCATCAATATCTCAAAAGTATGATGGAGGGTATCTGCATAATATTTACCATTTTTTCCTTTTGTTTTTGACAATTTATAAGGTAAATTAAAACGGCATACACATCACTCTTTTCAATTTATTTTGTGGATTACACTAAATATATTGCTACTATTAATTTTATTTCATTTATTACTTTACAAAATAAAAAATATCACTAAATTTGTTTTGCTAGGAAATCCACTTTAAAAATGATACTGTTTGATTTTATTAATAAGAAGAACACAAAAATAATCAAAATGAATTGAGAAATAATATATGTATAAATTTTATAATTACTTATATATTATTCACAATAAAATATAAATATACTGTTAAATTTTAATTAACTTAAAATTTTTATTTTTATCATTTTTTCAAGTGCAATACTTAAATTTTCGAGTATAATGACTTTAGTATTGATTAACTAAATCACTTTGTTCGTATAATAATAATTTTAGTATAGTTTAATTAAATTCATAATAACTTTCTTGTAGATTTTTCGTGTACTAGATGTTTGTGATGTGTATGCCATCTACAAACTTTTACTTTCAAACAAAAAAAAACTAAAAAATTCAAATCAAACCAAATCGACGATTATTTTTTATTTGATTTTAAAAATTCAAAAATCAATAAAATTGATTTTGAAAATGATTAATCTTGAACATTTGACTTTTGTTTTTCTCTCTCTTTATATATATAATTATGAATTTAAATAAATTATTTTCTAAATGTTGACAGGTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTATTTGAAGT</genome_strand>
        <mrna_strand>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342737" ref_strand="+" ref_description="SGN-U342737        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | cell division cycle family protein, similar to cell division cycle protein GI:603230 from (Homo sapiens); contains Pfam profile PF00515 TPR Domain 148977 (apparently not full-length). | chr1:29621812-29626340 FORWARD | Aliases: F9K20.19, F9K20_19(evalue: 1e-117, score=419) genbank/nr: gi|18412102|ref|NP_565188.1| cell division cycle protein family [Arabidopsis thaliana](evalue: 1e-115, score=419)">
      <seq>acaagctttgtatcttggtcgacactatcgccgtgcttttcaccttcttaatgcttctcaaatcgtccttcgtgacctccgcttccgatacctcgccgccaagtgccttgaagaactgaaggagtgggatcaatgccttctaatgctgggtgatgctaaagtggatgaacatggtaatattactgatacaagagagttcaacagcatgtacttggacaaggatggtgaagatcgtgaaataaatattttatcagcaatctgctttttgaggggcaaggcatatgaagcgttggagaatcgtgcacaggctcgactatggtataaagctgctatcaaggctgatcctttgtgttatgaggcattggaatgtctgatagagaatcacatgctcacttgtgatgaagagagaaccctgctctcatgtttgcagtttggtcctgaagatgggtggctttcttcattctattcttgtttgataaagaagtatgataaagaaaatgtggtggaagctaaatttagagagctggaacagagtggacctaatacaaagctttcggacaaatctgttttgtgtacgcttaaatccaactctgatcttttagcctgcaaagctgagtattatcatcaatgcggtgaatatcagaaatgctttgaactaacatctgaattgcttgaaaaggatccgttccaccctcagtgtaccctggtgcacttagcagcagcaatggagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="50544" stop="44625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50244" g_stop="50136" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50135" i_stop="48237" i_length="1899">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48236" g_stop="48102" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="244" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48101" i_stop="47997" i_length="105">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47996" g_stop="47923" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="318" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47922" i_stop="46933" i_length="990">
            <donor d_prob="0.104" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46932" g_stop="46893" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="358" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46892" i_stop="46618" i_length="275">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46617" g_stop="46572" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="404" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46571" i_stop="45682" i_length="890">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45681" g_stop="45602" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="484" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45601" i_stop="45339" i_length="263">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45338" g_stop="45157" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="666" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45156" i_stop="44994" i_length="163">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44993" g_stop="44925" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="735" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U342737" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50244" e_stop="50136"/>
          <exon e_start="48236" e_stop="48102"/>
          <exon e_start="47996" e_stop="47923"/>
          <exon e_start="46932" e_stop="46893"/>
          <exon e_start="46617" e_stop="46572"/>
          <exon e_start="45681" e_stop="45602"/>
          <exon e_start="45338" e_stop="45157"/>
          <exon e_start="44993" e_stop="44925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTTGTATGCCCTTTTTACTATACAAATAATTGAATAGTTGATTGTTTATTTGTTCCAAGATAATCCGGGTCATTTTGAGGTCTAATTGCTTCCATCTTGTTACAAGATTGTGTCTTTTTGCACTTTTATGAATAAGGTTATATGGGATCTTCATGTTTATGTGTTAATTGAGTAAAAAGGCTACTTATGCATTGTAATTTTATGTTAAGTGGTGATTAACAAAAGTAGGTTTAGGCTCTAGTAGCAAAATGGGGAATAACTACCCAAAGAACTGTTTTTGGTACTTGTTTATTTTTTTTTATTGGGGATTCAACATGTTTAGTGGTGCTCCTTAGCTGTTAAATTGAGTTATACAGGCTAGTTGTTGTGCTTTAACATTAGAAGTGGTGATTCAGCAAAGTAGGTTCAGCCTCTAGTACGGTTTTGCTTTAGTTATCACTAGTAAATGGGACACAAATACTACACAAAGCAGTGTATCTTAAGCTGTTATCGAGCAGTGTGTTGGACCTTATTATGTAAAACTTCATAGATACTTGGAACTTGATTCAGGTGTTAAATTTCAGGGGTTGACATCATTTGCCAGATGCTTGTTAATATATTTAAGATGGTTTGATCATATATCAGTGAGGTTGCTCAAAAATGTGAAGGCTTGATAAACCCTGTCTTTTTGTAGTGTAAACTACTTTTTCCCATCCCAAGTAATGTTTTGGACTTCCATCCCCTATCTATACTATAACCTCAAACCTCTTTCTACTTTCTGTGCACCAAATGTTGATTAGGAGATGAAAGAAGCACACCGTGGAATCAAACCAGTCATTTTCCTTATATGGTGAAAGTTGACAGTGAAGATCTACACTTGAATAAAAAATCTACACTAGAGAGCATACACTTGTTAGAGGTGATCCCCACCTCCCCTTTTCACCTAATCCATTAGTTCACAGCTTCACCACTTTATCTAGGATTGAGCTACCACACTCTTGAAACTCGGTAAAATTGTTTTCATTCAATGAGAATATAAAGAAAAGTAGCAATTCTTATAAAAAAGATAAACTGAACAAGTGGATCAGATTCTGGTTCTATTCTTCTTTGTTTGTCTTCCCTAACTTGAAGTGTTACAGTTGCAACACTGCAGAACACAAAACATTTAACTCAACACATAGTACGTGATAGTATTTCCAGCCTGACAAGTCCCACTAATCTTCTACTGTCATTGAATGCCTGCTTGACGCATTCATAAGCCATGAAACTACTTGCAAACAGGTTTAGTGCTTCACCTTGCTTGGGCAGTGCTTCAGTGCAAACACAAAGGTGTTAGGCGTGTGTCTCAGAGTCCAACTGTCTTAAAGAGAGGGCTAAACAATAAATATTTCACCTAATTGTAATTTTGAAAATAAGTTATATAATTGTTATTTGTGTTTATAGTTATTATTCTTGAACTACTACATATTCTGAATTTTTTTGTTAATTAGAATCCCGTGCTTTGTGTGTAGTGCTTAAAGTTAGACATTTGTGCTTCTTTTCACTTTTTGCCATTGATTACATGGCTGCCTACTTGGGCAAGGTGCTACCATTTGAATGTAGGTTGCCGTCTTTCCACTTTCAGTTATCAACATGTCACATCCCTAAGTATGATTATGGTTAGGTTTTAATCTGTAGTATCTGTCCCTTGATTGAAGCCTCAATCCCTAAATAATTGGGATTAACTATAAGTGCTAGTTGGATCCATATTTTCTTCTTCTTCTATATATGTGATCTCAAGAACAGGTCATCATAATCTTGCACTTACCCCTACACTAACATACAAGTAATTAACCAGACTAAACATTAGGCTTAACAAATTGGATACTATTATGTTCTAAAATAGTTTGCTTAAATTTCCTTGTATAATTTCTGTATTTTTAGGAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAATGTAAGTTTCTCCATTATCCCTTACCTAGTGGGGATTTCCGGGAGAATCTGTTATGAGTCATGACTTTCCCACAGATTCAAAATGCTCTATGTAAATCTTTGACAGATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATGGTTAGTGATAGTTTGGATATAAGACACTGATGTTCATAGACATAATTTTGGATTACAGATTTGGTCTTAACAACCTCCGTACCTCCACGAGGTAGGGGTAAGGTCTGCATACACTCTACCCTCCTAGATCCCACTTTTGTGATTTCACAAGGTATGTTGTTGTAGATTTGGTCTGAATTTCTTGTGGGTCACGGGAGAGATTTCTCGGTGCTATAGTTTTCTGTTTGGCTGGTAATCATGTTTTCACACTAGTTATGAGGGAGAAGAAATGATAGAAAGTATAGGAAGTGAGGCAAAATGACTTTCCACATTTAATTCGAACATAGTACGCCTTAGCAAAATCGAATAAGCAAAGAATGAAGAAGTTTAACAGTGTTATTTGGGTTCCTTGAGATAAAAGTGGTAAATACTCTAAACCACTTCTATCTCATCTTTTCTCTTCTAAAAAAAAGATAAAAGTGAGTTAGAGCATTTAAATTCCTTACATCTGATTTCTGGTAGTTTCTTAAACTGAAAAGAATAATTGGTGTTGAAGTAATTAACTTTTGACTATAGCCTATCATACGGATGAACCTTTTGTTTACAGACCCCATCCTTTCCCTCGCGTTGGCTCCTTCATTTGTTGTTTGTTAATACAATGAAGAAATTATTGGTTCCCCTTAATATAACTGTAGGAACAAATTATCCTCTTCTTTTGTCTTGTGTTCAGCATCTGTGATCATCAGTGATCTCATCTCCTTACCTCTCATTCCTTGCTTTCTTGTGCATAGAATTAGGTTAGAAAATGAATCTTGAAGATCCTATCTGATAAAGAGATGTATTCAGTCTCAAGTTAACTGTATTGCAAGAGATATCATTGAATCTGATGTTAAGGAATTACAATTCCATCATGTGCTGAGCTGTCTTTCCCTACTTCTTAATATTGATCTAGCAGTTAAATATTATCATCGTAAGGAGCTGACTTGTTATAACTCCGTGACACTTTCTTAGGTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAGGTATGTAAGTTTTGGTATTCTAGTCATTCTTCTTTAATTGATGGAAGTCTTTATCTAGGGGTTGGTTAGTATGTCTCTTGGTTTTTTCTCCTCCTTTGTTATGGCTAAGGAATTAGTCTTGTCAATTACTGTATTAGAGGCCAGATTTATATGGTAAAACTCTGGAAGATACTTAGTTATCTTATATTCATTTTCCTTATCGTAGAAGCATCATAGGTCCTTCATGCTTTCAATTCCATGACAATCTTATGAAATTTATCTATGCTCATTTTCAGGCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAGGTGAGAACCTTTGCTGTTTAAAGTGTATCTTCTTGGAACTATGAAATAGTACAAGCTAATTTGTAGAATCAAACTGTCTTAAAACAATGCAAGTACTTTTGGAGACCGTGTTTATTGTACTCTAAAAGTCCTTGGTGTGTGTTTTTATAAGTAATGAACATTCTCTTTCTTTTAACCAAACATTCTATAGCTGTTCAGTGCTGTTAAAGGCCCGTAATGTGCTCAAACTCTGAAGCTGTGCAGGGGCAGTTGGCTGCTTGTGTTGCTTAGGCAGTATCTATGTAGGCCCCAAGACTAAGGGATCCTCTTCACCACCTATAAGCTCGGTCTTGTAGGGAATAGAACTAAACAACATATATAACTGGAGAATACTCGTAAACCTCCTTGGCAAAGTGGTATATTAATTGATAAAGAAATGTTATATAAATATGTGAGTCATTAGAAATATAAAGTTGGAATTTTAGTAGGGAAGTAGCCACTGAGCCAATATTAGAAAACCAAACCCCCTCTTAGCATTAGAATCAGAAATTTTAAATAGTTTTCGGAACAATCGAAATGTTAAATATGCACTTAACTGTAGCTTCTCAAATTCCTTTGTCCTATAAGTATTACTCGTGCTATAGTTAATTTTTTCAGATCACATTTATAATTTTCATTTGTTTCTTTTGCACCTTTATTTACCATGGCCTGCTCTTTAATTGTGTTTTGCACTTAAAATCTTGTTGAATTTTGGCATTTTTTCTGCTTTTACCTTTTTTAATGCTATTTATTGTTGATACTATCATTGAAAACTGCCAATCTTTTAGATGATAGTATTATTGTGTTAATGTTATCTTTGTTAAAGGAATTATTATGAGAAATTGACCAATCCAGTTGCTAGTGAATTTCAGAGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAGGTAATCACTTCTTATAAGACTACATTTTATTCCATTTGATCTTCTTTATGGATCATAAACACTTAACTTTTAAGTTTCACCCAGTTGAAAAATAGAATATTGAATTTGGTACTTTATATTGATAACTAGACAGAAGCTGTACTTGAATTTTTACAGAAATGTTGAAGTGTTCTATTATTTGCGTAGAAAAATTTTAGTTTTATGTTTTGCTCATCCATTTACTCCTCAATGGAATAATTTTTTCCTTTTCCTGTGCTTCTCAGTATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGAGTAAGTTGGTAACCCACCAGAAAGGAAATTATGTCTTTTTATTCTTTTGCTAGATCTTATTGTATACTGATCACATGTATTTTGGTACCTACTTTACATCACTACATGAAATTTGGCAACTGTTTTCTTTTCCTCTTATACTTTGGTACATGATAAAATACAGATTGCTTGAAAAGGATCCGTTCCACCTCAAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</genome_strand>
        <mrna_strand>ACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAAT.........................................................................................................ATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAG...................................................................................................................................................................................................................................................................................GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAG.......................................................................................................................................................................................................................................................................TATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGA...................................................................................................................................................................ATTGCTTGAAAAGGATCCGTTCCACCCTCAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340275" ref_strand="+" ref_description="SGN-U340275        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:19899695-19901110 FORWARD | Aliases: F12M16.23, F12M16_23(evalue: 4e-53, score=177) genbank/nr: gi|15219274|ref|NP_175740.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|25405981|pir||E96573 protein F12M16.23 [imported] - Arabidopsis thaliana gi|7769859|gb|AAF69537.1| F12M16.23 [Arabidopsis thaliana](evalue: 3e-51, score=177)">
      <seq>ttcctttgaacaatttaggaatgccgaaaatggagaaagtgaaaaaggtatcactctttcagtctctcttctctacttcgccagcaaaaagatgctaaaatcgcccttcaactcttccttaatcctaatcccagccatggaagcgacaaaactactaaaccttttcgttattctccactctgttatgatctcatcatctgcaagctcggcagaggtaaactctttcaagaaatggaaaaaatcatcgataaattgagacaggacactcgagtttctctcaacgaagttgttttctgcaatgttatttctttttatggaagagcacatttacctgataaggctcttcatatgtttaatgaaataccctcttttcgctgctatagaagtataaaatctgttaatagcttgttgaatgcacttttagcttgtaaagaatacagcaagattggtgaaatgttaaacaactttgaaaattacgcaaccccagatgtttgtacgtttaatatattgatgaatgcgtgttgtttgtgtggtgatttggggtggtgcacgggaggtgtttgatgaaatgtgtgagagaagaattcagccaaatgtggtgactttggggacgttgattaatgggcttttgtgtgaatcgagaaattaacgaggcgtttaggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="51062" stop="52323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51362" g_stop="52023" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U340275" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51362" e_stop="52023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGAACAATTTAGGAATG-CGAAAATGGAGAAAGTGAAAAAGGTATCA-TCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTT-GGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAGGAATTCAGCCAAATGTGGTGACTTTTGGGACGTTGATTAATGGGC-TTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</genome_strand>
        <mrna_strand>TTCCTTTGAACAATTTAGGAATGCCGAAAATGGAGAAAGTGAAAAAGGTATCACTCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTTGGGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAAGAATTCAGCCAAATGTGGTGACTTTGGGGACGTTGATTAATGGGCTTTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325360" ref_strand="+" ref_description="SGN-U325360        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G53440.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr1:19949627-19955230 FORWARD | Aliases: T3F20.24, T3F20_24 (evalue: 2e-172, score=602) genbank/nr: gi|15220790|ref|NP_175749.1| receptor-related serine/threonine kinase [Arabidopsis thaliana](evalue: 2e-170, score=602)">
      <seq>tttgataacatgtttcttggtaacaatgcattaagcggagcaattcccagctggatgtttagtaaaagagagaacatggatatgtcatacaacaatttcacacaaatatctactccagtatgcgattcctctaccttaaacttagctgccagctactccgatacaatgaacaacaccacggatgcctggtgttctatgaaacccctcatttgtcccacagacacgaaatatacttcactattcataaactgtggaggacctagaacttcatttgagggaaataattatgaggcagacacgaccaatagaggtccgtcatatttttcttcgccctctgacagatgggctttcagcagttcaggagtgtacgtgggtcttcaagctgccagttatattgcatcaaatacattttcactggatgtgtccggtcctgacttctacaatacagcacgccttgcccctaattccctcaaatattatgggctttgcctacaaggaggtagctacagagtgcgccttcactttgctgaaataatgttttctaatgactcaacatatagcagccttggaaggcggatatttgatgtagcaatacaagggagagtagttttgagggatttcaacattatggaggaagctaacggtgttgggaaagtcattaccaaggactttcctgatgttactgttagtagcactctggagattcatttgtattggaccgggaaggggactaacgctattccagacagaggtgtatatggaccactgatttcagctatcacagtgacaccaaactttagagttgacactggtagtggcttacctgttggagctgttatcggcattgtactcgcttcaattgtagtgcttctgctagttttatttgctctgtggaagaaaggcatttttggagggaaaaataaccaagaagaattagaactcagagcccttgatttacaaacaggtcattttagacttagacaaattaaagctgctactaataactttgatcctgccaacaaaattggtgaaggagggtttggaccagtttacaagggtgtactcgccgatggtgccatcatagctgttaagcagctgtcttccaagtcaaagcaaggaaatcgtgaatttgtcaatgagataggcatgatttcagctctacaacacccaaaccttgtcaagctttacggttgttgcatagaagggaaccagttattagtgatatacgaatacatggaaaataactgtcttgctcgagctctctttggccgtgacgatcagagattaaacatagactgggcaaccagaaaaaggatatgctcaggaatagcaaaagggttagcttaccttcatgaagaatcaaggttgaaaatcgtccatagagatataaagtgtacgaatgtgcttctttgataggatctgaacgcgaagatttcagattttggattggctaaattagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="66751" stop="63295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66569" g_stop="66559" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66558" i_stop="66450" i_length="109">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66449" g_stop="66384" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66383" i_stop="66187" i_length="197">
            <donor d_prob="0.288" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66186" g_stop="66127" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="137" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66126" i_stop="66014" i_length="113">
            <donor d_prob="0.896" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66013" g_stop="65972" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="179" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65971" i_stop="65875" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65874" g_stop="65825" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="229" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65824" i_stop="65641" i_length="184">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65640" g_stop="65273" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="597" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65272" i_stop="65133" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65132" g_stop="64937" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="793" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64936" i_stop="64857" i_length="80">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64856" g_stop="64713" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="937" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64383" g_stop="64265" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="938" r_stop="1056" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64086" g_stop="63876" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1057" r_stop="1267" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63790" g_stop="63595" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1268" r_stop="1463" r_length="196" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U325360" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66569" e_stop="66559"/>
          <exon e_start="66449" e_stop="66384"/>
          <exon e_start="66186" e_stop="66127"/>
          <exon e_start="66013" e_stop="65972"/>
          <exon e_start="65874" e_stop="65825"/>
          <exon e_start="65640" e_stop="65273"/>
          <exon e_start="65132" e_stop="64937"/>
          <exon e_start="64856" e_stop="64713"/>
          <exon e_start="64383" e_stop="64265"/>
          <exon e_start="64086" e_stop="63876"/>
          <exon e_start="63790" e_stop="63595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATAACATGTAGGTACCGTGCAGTGAAACCTTTACAAGTTGAAGCATAAATCTTGTACATTCTTTTCTCAAAGTTTTCATTCGGTTATAACAAGCAAAAGTTTTATCCGCGATGTAGGTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACATGTTGGTATTTGCTCAATTTGTTCCGATTTCCTCGTCTTAGTAGTAAACTTTGGTTATTATCACAGTTAGCTCCCAAACAAAAATGCCACACTTCAAAGCTAAAGTTTGCCCCCGAAACTTTTGTTTGCTGCAAGGACGCATTTACAAGAATTTGATGCCTTCTATGTGCATGACAACTATAATCTTATTTTATGCAGGGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTTGTGAGCATTGTTCCTCTTTGTTTCGAAACTACATTCATATATTATTTCTTTTTTTATAAGTGAAAATTTTGGTCCTTTAACTACATAACTTACAAACCTTCCTTCTTCAACAGAAACTTAGCTGCTAGCTACTCCGATACAATGAACAACACCACGTAAGTCCTCCGAAATGTTGTCTTATGCATCAACTGCTTGTTTGTTTGATGCATCAACTGTCTATAGTTGTGTGGATTAACTTATTTGAAATTGCAGGGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAATGTAAGAGTTACAGCCTATAAACCTTTTTATTTTATACTCGGAGATTCTTAGCTTGGCCATTGAGATGGCCTGAATTAGCAGTTTGTCAAAGGACCTCACCACTGAAGTACAAAAGCATAGCCTTGGAGTTGATGTATAATTTCACAACCCTTCCTTATGTTTATGCTCTTTATGTCAATTGCAGATACTTCACTATTCATAAACTGCGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAAGTAAGTTTGAGGCCTAACTTCTTTTGTAAATAATATGTAATCTAGAAAGTTGATTTATTTAGTTCTGATATGATCGGCAGCTTTCCAATTTAATATTTAAGGTACCAATTTTAATGTGGTATATTTTGATTTCTTACCAGGGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAAGTTCGTATATCTCTGCCGATAGACTTTAAACTTATTTTCCCACAAACTTATTTTAATAAATTCCCACTTTGTTGTTGCAGACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAGGTAATACATATCTCAAAGACTTTATTCACTCTCTATATTTGATAATATGGCGATAGTTCTGTTGTGATAATCAGAATCATTTACGAGATTTCTAGCCGTGAGATACAAATAATTATCTCCCTGTAATTGACCGGCATTGAGATGATTGTTCTGTTGGTGGATCGACATCATGTCGTATCATAGATACTTAGCACACGATTAAATGCTCATGACGTCTTAAACTGTCTTCGTCATACAGATGTTCATTCTTTTAAAAGTTGTTTTTCATCATACAGATGTTTTAGAAGATCTATATATACTGACGTTTGCAATGTTCATCTCGTTTACAGAACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAGGTATCAATTCTCTATCCATACTGATTTTGCATAAGGACAGCTTGCGGTTTTTTGGTGATATTTCCTACTGGTTATCCTCGATGTCATGTTTATAGGAAAAATAGAGTAGTAATAATTGAAGTAACTCATATCCTTCTTCTGTCTGTAATATGATTGTTGTGAATATTGCTATCTGTAGGGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTGGTAATGCTTCGCAACAACATTTTAAGAATCGTTAATTATGCAGTGATAGTTCATGCTTCACATTCCTCCAATTCTCATTTCTCAGGCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGA</genome_strand>
        <mrna_strand>TTTGATAACAT.............................................................................................................GTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACAT.....................................................................................................................................................................................................GGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTT.................................................................................................................AAACTTAGCTGCCAGCTACTCCGATACAATGAACAACACCAC.................................................................................................GGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAAT........................................................................................................................................................................................ATACTTCACTATTCATAAACTGTGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAA............................................................................................................................................GGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA................................................................................ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG.........................................................................................................................................................................................................................................................................................................................................AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG..................................................................................................................................................................................GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG.....................................................................................GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTTGATAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339541" ref_strand="+" ref_description="SGN-U339541        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824968|gb|AAT38742.1| hypothetical protein PGEC093P17.31 [Solanum demissum] (evalue: 5e-18, score=95.1)">
      <seq>cttgatgagaatttgtcttatgaggaggagcctgttgccattttagatagagaagtccgcaaattgaggtcaagggagattgcatctatcaaagttcaatggaagaatcgaccagttgaagaatccacttgggagaaggaagttgatatgcgagaaagatacccatacctgtttacagattcaggtactccttttcgcccttgtttttcttcttgtgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagtaacagattttatttctggaaaaactgactgagacgacggatcccacgacggaccgtcgagggggtctcgttccaaaacacttagaattctgaaatttgggtactgaaatcgactctctgaacttcgtgacggaatggcaggacggaccgtcacaggcgtgatgggccgtcacagacccttggtaaaaatctagtctctgaactctgtgacggacgtgcaggacggaccgtcacagactgcgtaatcccaggctgggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="93147" stop="76804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92847" g_stop="92508" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92507" i_stop="77326" i_length="15182">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77325" g_stop="77147" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="518" r_length="178" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U339541" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92847" e_stop="92508"/>
          <exon e_start="77325" e_stop="77147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATTAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGTGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGTACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCATCAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGGACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTAAAATTGGGTACTGAAAATTGACTCTTTGAACTTCGTAACGAAATGGCAGGACGGACCGTCACAGAGTCGTCAGTGGAAACCCAGTCTCTGAACCTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGGCCATCGCAGGTTACGTAATCCCAGTCTGGGTCGGATTTCTTTACACGTTTTAAGGGACGTTTTGGACTATTCCTACTTTAATTATAAAGTTAGAGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAATTAGTGGGTTACTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAAGAGGGTTTGAATAAAGAAAATAGAAAGGACAAAGAGAGAGAGAGGATTGATCGAGAGAGGAGAAACGAAGAGGAAAACACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTTTATACTATTCGTAGTAAACTCTTAATAGCGAATGATATGTATGGGTAGTATTGTAAACCCTTCTATATGCTTAATTGTATGCTTGCATGAATGTGATTATGTAATCGTGATAAAATAAGCATGATGAAGCTATTGAATCCTAAATCTTGAAAAAGAAACCCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAGGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACATTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCATGATAGTATATGAGGAGCGGAGTGTCACGTACCAACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATGTTAATATACTCAATCTAATGAATCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTACCGTCATCTTCAACTCAACCGCAATTCTAGCCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTGTTTTAGCTTTTAGAATACTCTTAGTTTAGTAATTTGATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTTTTATTTAATGAGTTCGAGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGTCCGGATTTGGGTCGTGACAACACCAGTCCCTCATGGGCCTTGCCTGCTTGCCATAGGAACCCAATAATCCCTCCCAACACCTACCAACATGTTTGCTCTTGAGAATCGAACTCATGATCTTGACTCTGATACCATTTATTAGAATTAAGTGTTCATTCTCAAGTTATAAGTTATAACTGATAGCATATACACTATTTTATTTCATAACTAAATCGATCGAGCAAACATCATGATTATAACTCCAATCGAAGCCACACCAGCCCCTCGTGCGCCTTGTCATAAGATATTGGCATTATCCAACAAAATGTAAGAGAGTAAAACTAAAATAATATCAACTTTCCTTATTCTGAATTTGCATAGTTTAACACATCAATTTCATATTCTAAATAAAATTTATTTACTTTTAAGGTTGAATGAATGACCTTCAATGAAGCAATATTTATTTTATCATTTAAACATATATTTTTGAATATTAATTATTATTTTCAATAAATTTAAATATTTATCACTTGACATGATACGTACGCTGATCTAGTGAAAATAAAATTATTAATATTAAAGACTAATAAGGTTAATAATTTCAAAAAGAAAAAAGTTCTCAATATTTTCTCTTTTCCTTTATTGGTATTAATTTTCTAGATAACCAGTTCGGTTGAAAATTCATAAGTGAATTTTTTCATAAATCTAAGGCGAAAAGAAATATTGACTATAACCTTAATGAAAATAAATTACTCCCCTCCATCCATCTTTAATTGTCATGATTTCTAATTTTACAGTTAAACTATTAGAATTTTGACTAACATTTTAAGATGTATTTTTTTTATGATGATGATATGCAAAAACAATGCAATTTATATAGTACTTTTCATATAGTTTTAGAATATCTAATTTTTTTGTTTAGAATATCAAATTAATATATTTTAATTTTAACTTTGAAAATTAGTCAAATTAACTTTAATAAAACGCAACATGACAAATAAAAGTGGACAGAGGAAACAATACTTAATATTTTTTTTAAAAAAATATATTAGATCTATAAGTTTTCACACGTGGAGATTTAATTTTCTTATATGGTCACTCAACTATCATCTATTTTCTCAGAAAGTCACTTAACTTTGTATTTTACCTCAAAAGTCACTCAACTATCAATTCTTCGATCAAAAAGTCACTCAGCTTTGAATTTTAATTCAAAAATCACTCAACTATTAATTGTTTTCTCACAAAGTCACTCAACCTATTTAATTGATATTTTAATTTAAATTTTCTAATTTAATTCTTTTTATTTAAAATCCAAAATTTTAAAAAATTAAAAAATATCATTTAAATCATTTAATGACCCGCCCGTTAAAAATATACTATTGACCCATTTTATTTACTTTCTGAGAGAACAATTAATAATTAAGTGACTTTTGAGTTAAAATTCATTGAGTGACTTTTTGAGAGAAAAATTGATAGTTGAGTGACTTTTGCGATAAAATACAAAGTTAAGTGACTTTCTAAGAGAATAAATGATAGTTGAATGACCATATAAGATATTAACTCCAAGTTCCAACCAAATGGCTATGAATATTCAAATACAGAAAAAAGTACTTTTAGAATTTTTTTTATTACTGTTTTTTCCTATGTATGTTATGTACTATTGATATATACATTATTTCGTTATTATTACTTGTTCTTGTATTTCCTTTGTCAAATTGTTGGAAAATTAAACATTATATTTTAAGATGAAGAGACGAGATATGATACATTTTGTATACACTTTGTTCTTTATTTAATTTTGAGTTGTAATTATAAAATTATATTGAATATGTTATTATTGACGAAAAAAAACTGGAAAAAGTTACCAGAGAAATAAGCACCGAAAACACAATAAATTCAAATACTTAATTTCGTCATAGTTCACATTTTTCATACTTCTCTATCGCAATTCTTGTGAGGGAATTTAAGTACAAGATTAAAGCACTTAATTTTCACTTTGACTTTATATACAAATTTTGTAGTATTTGATCGAAATTATTAATTAGATGACTTATGAGTTTCTTTTTAAAGCAACAATTTACAATTATCACTATACATATTACTGATCGTCAAAAATCCTTACAAATGAACAAATTTCCCTGTTTTCACAATCTTGATTAATACAAAAAAAAAAAAAACATAGTATGTATTTATACATTATACAAATATACATGGTTTATATAAAGACAAATAATGGGTTAATTGATTAATGAACACCTTTTATGTGTAGGTTTTAACCTAATAACTATTTTCTATCGACTTTTAAAAAATTAAAAATAAATTCTATATAAAAAAAAATACTATAAGTCAACATAATGAATAATTTAATTATTTTCTTTTTGGAAAAATCATAGTCAAATTAAAGATTTGACAAATATAAGAAAGAAAATATCTTTCTTATTTTTTCTTTATAGAGAGGTTGGGATATTAAATGCATCATTGCTGCAAAATATCTACATAAAATTTATGGATCAAGTCTATGGATAGTACATATTCTTTGATATGCATATGAGTAAAACTTAAGGTGTCCCCACATGAACTCGGAATTTGAAGATTTCGAATATATTATATTATTATTATCTCAATTTAAATATGAACTCTAAAATAAATTTAAAATAAAAACAATGAAATTATAGTGTAGTTGGATTCAAATCCAGGTCTTGCGGGTGATTCCTTTAGCTTGTAGCAGCAATACAGTGGACACAAATGTTCATCATTGGTATATTGATAATTATATTATAATTTATGTCAGTTTCTCAAGATAGATATACATCTATATACACATAATTTTTTTCAAAATTGACAATTATACATGTACCACGCCTGTTTGGGTGGGTCCGCTTATGAACAGCAAGATTAAAAAATTGGTGAAGGATGTAGAATTTTCTTTTAAACATACATAAAATTTAATATATGATCATAATAATTAATAGGGAAAATGTACAAATATCCTCTTAGATTATGACCAAAATTTTAAAGACACACTTAACTAAATTAAGTTCTTATTACTCGTTGAACCTTTTTTTTTGTAATTTTGTGCACCTTTTGGCTTACGTGAATCTAAATATCTCCGATGCACCTTAATTATGTAGAGTCATGAAGTATGTCACATAAGATAAAAGGTGTATAAAAAAATTTTAAAATAAATTCGGAAAAATAATATGAACTTAGTTTAGTACCTTAATTAACCCTAATTTATGTTTAAACTTTATATAGCACTTAGCGGTTTTGACAAAGTTTATTGGAAAGCATAAACATATACATGTCAAATGAATATGTCTACGAGATTGAACGAAAATATGAAAGAGTATAGATAATGAAAGTTACATTACTCTGACTATTTATAGCATAATCTTTTTTCTTTTTAATTAGAAACAAGTTACTTTGGAATTGATTATTTTTAACATAATAAGTTATTATTATATATATATATATGATAAAGAAAAAATAATGTAAGATCTCCAACGTACTAAACATAAAATAAAATAAAATATAAAATTGTATTTTATTTTGAAATTATTAAAGAAAAAATTAGTGTTAACTAATCATATACTAGTTAATTAGTCATCATAGCTAAAGTTTTAGTTGATTATAATTTGCGACCAACATTCAGTGAAAATTGTGTAAACTGGGGTTTTGAGTTTGTATAGTCCGCATGTTTTTATAAATCAAGATTTGTATAAGTGTTTAAAGTTCAGATGTTTGTGTTCGTATAACTTCGTTATTTCAAGTTTATATAAAAAAAATATAGCTCACTTTTACAAATGTACTATAAGTCTATAATCCACAAGTATGCAAACTATAGCTACAGAGAACAATTAAGTTTATTACAGTAACTATTTACAAAAATTCATCGATATTAAATTTTATAGGTCACATCACACAACTAATTCCTAGCATAATGAGAAAAGGACTAGAGATTGAAGTAGTCTACGCAAAAACTTTTCAACTTTTTTATATCTTGTTTAGATTTCCTATTTTATAAATAATCAACAATATTGTTAGTCTATTTCTATTGTTAAAAAGGGATAAACAATTTGTAATTTGAATTTCTTATCTTATGTTACTCGATTGTCATCTATTTTGATTTAATTATTCGATTATTTTAAAATAAGAAAAGGACAACAATTCATTCAAAAGGAAATAAATTCTCTTAGTATGGTTTTGAATTTTATAATTTCTTATATCTAAACTCAGATATGTTTAACTTCTTGCTTATATTATTGCCTAATTTAATATACTAAACATCATAACTTACTAAATAATGCATAAGTTATCGATCTTGTTGCACAAATAAAATATGCTATTATTATATCTTATATGCATAAAAACAATATATTATGTATATATAACTATAAAAAAAAAGTATGTTTATAATTTATCTGTTTGATTATTTCTTTGATTACATGGAACAAAATTAAAATCAAAATCAAATCAATTATTATTGACTTTTAACAATGTAAAACGAAACCAAATAAACAAATATTTGGTTTGGATCGTTTTTTTACCAAAATCGTGAACACTTTTATCTTATGCCAATGAAATTTTACTTAGTGAGATATAAGAGAATAGAGTGTGCACTGATTTATCATTATCTCGTAGAGGTAGAGAGAGTAATTTCAAAAGAAATTCAAAACAAATAGAGGGGAAAAAACCAATAAAAAAAATGTATATAATTTAACTATCGAAAATTAAATATTAATAACAAATTAAAGTGAGAGAGCAATAGTTCTTACATCAATTTTTTTTAATGAATTTAAATATTAACTTTAGGAGATGTAAACTATTTCAAAATTAATTCAACACAAAAATAATGATCTTTAAACTATATTTTTATATTAAGAAATTATTTTTCTTATATTTATATTTTTTTCTTAATAGACGGAAATAAACTACTAAAAATATGCTTATTTTAGAATGAAAAAAATAATATTAATTAATTAGATGACGGTACGAAAAATCAAATTTGTGTATTTGTATATCTGTGGACTGTGGACTGTGTTAGTTGATTTTTCAACATTATTAAATGGATAACAACAAATAGTAATTGTTTACAATAAATTTGGATGGTCAAAATTTATTTTGAATTTTTACTCTTTCAAAAATATTTTTTCGTAGAAAAAACAAATTTAATGTGATGCATTATGTTTAAACTGATATCATTGCCAATGGCCAATATGATGCATTATGTGAAATTAGCTATCGATTTCCTTGCTAATCATTCTTTTAATTATTCGTAAATCGTAACTAACAAAATCTTTTGAAAATCCATTGCTAAAGCAAAGGGTTTGCCTTCTGGTCAACTCTTCGGGGATATCTAGTGGTTTGGACTTAAGATTTTCAAGTTGGAGGATTCAAAGTTCGAAACCCCTTACAAGCGAAAGTAAGGGGTTTGCCTTCTGGATTGAGTTCGTCACACTAGACTTGCCTAGTGCGACTTATCTCTCCTGTAGGATATGCAAGTTCTTCCATAGAAATGGGGATTTTACCTGAGTGCACCCAAAGGTAGTGTCTGCAGGTTTCTCTGGTCATCAAAAACTACATAATTTGCTCTTGGAGTTTGACAAGAAATATCGATTTCCTTGCCAATCCATCTTTTAATTATTCGTAGCTAACAATAATCTTATGATAATCCATCTCTAAAGTAAGGGGTTCGCCTTATGGTCAACCCTTCGCAGGGGTGGAAACAACATATACTTAGGGGTCATGCGAACCCTTTCAGCAGAAAATATTACAATTTATGCATGGTAAAATTATTTTTTTAGATATGTAAAATAGATGTGGAATCCCTTTCCACTAGTTTGTGTGTTTAACTTCTCAGATTTTGAACCCCTTACTAAAAATTCTGACTCCGCCATTGTCCCTTCACCTAGTGGTTTGAACTTGGAATTTTCATGTTGGAGGTCTGAAAGTTCGAAACCCCTTGTCAGCCAAAGTAAGGGGTTTGCCTTCTGGATCAAATTCGTGCAAGTTATTCCATAGAAATTAGGTTTAAACTTGGAGTTTAAAATAGTATACTATATGATGCATTATGTTTAAACTTATAGCATTGCCAATGACCAATATGATGCATTATGTGAAATTAGCTATTGATTTTCTTGCTAATCTATCTTTGAATTATACCTAACTAACAATATCTTTTAATAATCCATCGCTAAAGAAAGGTGTTTGCCTTCTGGTCAATCCTTCGGAGGAGCGGAGGCAGCATATAGGGGTTCATCCGAACCCCCTTCCACTAGTTCGTGTATTTACTTCTTAGATTTTGAATCCCTTATTAAAAATTCTGGCTCTACTCCTGATTTTCAGGGTCCCTAGTGGTTTGAACTTGAGATTTTCACGATGGAGAGCTCAAAGTTCGAAACCTCTTGCCAGCGAAAACAAGGAATTTGCCTTCTGAGTCGAGTTCCTAGTACGAGTTACCTCTCTGGTATGGCATGGAAGTTATTCCATAGAAATGGGGGTTTTACCCTGTGAACAGATATTGGAATGTGAACGGAGCCTCTTGTACGCGGGAGAGGGATTTTAACATGACAGTTCCTAATAATAAAGAGGTTTACAGCAATGTAAAATGTAATCGTTCATTCAATAATGGCTGAGTTTGCCATGTCGTAGTAATGTAAGCTCTTGCTTTTGATCTTTGTAACTTCACATTTTACTCTTAAATCAGAAAGTGCATCATGTAATGAGAAATTCGTATGCTTTTTTTGTTGTTGTTGATACAGCCAATTGAAGCGTCTTAGTATGACAGGAATTCTGCCTCCAGAATTTGCAAATCTTACTCATCTGCAAGAATTGTGAGTATCGTTTTGGGCTTGGAACTTCCATGTCAGAGGTCTTAAGTTCAAGTGAAAGCAAGGGTTTTGCCTTCTGTCTGTGTGCACAATGGGGTTTTTACCTGTGGCTTTATCAATTTTTTTCTTTTCCAGAGATCTGGCTCGTAATTACTTAAGTGGATCGATTCCCTCAAGCTATGGCCAGCTTCGTAAATTTAATTATCATCTCATATTGAACTTGACAATTAAACTTTGTGAAGTTGCATGAAAATCTCTATTTAAAAAGTAAGTAAAGAGTAGATAACGTCCAATTTTTGTTTGAATTAATATTATCAACTAATCTCATATTTATATTCTCTAGTATATTTTTGGTATAAGCAACAATTAGCAATCTACAGTATGATTGAAGTTTCAGAGACACTATAACTAAATTAATGTCTTACTATCTCGAATTTCCTTTTTTTGGTAATTTTATACATTTTTTTGGCTTATATGACATTCAAATATCTTTCACGTGCCTCAACTACGGTGAGTCAATGGAGTGTATCACGTAAGCCAAAAGGTTTATAAGTTTTAAAAAAATGAGTTTATTACAACCTTAGTTTTGTTAATGCGTGTCTCCAAGATTTCGGTTATAGTCTAAGGGTACTTGTGTCTTATCCCTATATTTTTCATAATTAATACTCCATCTATTTCTATTTACTTGTTCATTTTTGGCTTGACACGCCTATTAAAAAAATAATTGACATATCATTTTTCCCCTATTAATTAATAGAATTCCAAAATTAATTTACTCATTAAGAGATTCTACGTTTATTTTTTCAAAAATATTAACTCTCTAAATAAGTTGAGGGTATAATAAATAAAGAAAATAATTTTTTTTCTTGATTCATAAAAATGACGAATAAAAAAGGATGGAGGGATTTTATAGGTTTTTACCCCCCCCCCCCCCCGCCCAATTAATTGATAAAATCCCAAAATTAATTTACTCATTAAAGAGATTCTATCTTTATTTTTTCAAAAAGATTAACGCTCTAAATAAATTGAGAACATAATAAATAAAAAAAAAAAAATTCTTTATTCATAAGTATGACCAATAAAAAAGAACGAAGGAAATTTATAGATTTTTTGAATTTTGGAAAATTGATGAAAGTATATGAACTATGAAGCCGATTTGAATAGAAATAAAGACTAAAGTAAGAGTTGAAAATTACGCAAGATTTTTTGTGTTAATTCATTCTTAACGTCAAAGAAAACTTTGATTTGTATTAGCATATTGTCAATTAAGAATTAATAAAACATTATAGTAAATTATCACATGATAAAGTAGTTGACCATGCAAAAAAGAGTCGTTGGCCAAAATTACTGTTGTACAGAAAAGTTTCATGGGATAAAGTGTACTGACCTTTCATACACGTTCATTGAATTTTCAATTATATTCTATATAATATAATAATAATAATGAAAAGGAAAATAGAACATTATTTTATCGATTACTTTTTACCTTTCTATTTGGGAAAATACCTTAGTACCTCCTCAACCTATGTCCGAAATTTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAGCTTATTTTATATGTAATTTTCTACCCTTTTTTAGCCTACGTGACACTAGTTCGAAAAAAAAAGTCAGTCATCGTTGGGCCCACAAGATAGTGCCACGTAAGCTAAAAAGGGGTAAAAAATTATTAATAAAATAAGTTCAGGGGGTAATAAGACCTTAGTATAGTATAAGTGTATCTCTGAGATTTCGAACATAGGTTGAGGGGATACTTGGGCATTATCCCTTTCTATTTTAATAATCGGTCTTTATATAATAAGAGAAAAAAAGTAAACTTGATGAACTACATCTTTATTTTATTAAGTATTTCTTTAAAAAAAATGGTATGAAAAATATTTTAATTTTAATCGAAATTATTGTTAGATGTCAAATTTTATAGAGGATCTTTTACCCCGTCACTAATTAATACTCCATCTGTTTCATAAAGAATGATCTAGTTTAACTTGACACGAATTCAAAAAAATAAAGAAGACTTTTGATCATGTGATCGTAAATTAAAGTTATGTCAAATATACAAAATTATTCTTTAATCTTGTGGCCTTAAAAAATATTTCAACGTGGAAAGTTGTTACCAAAAAAAGAAAGAGGTCGTTCTTTTAAACAGACTAAAAAAGAAAGGAGGTCATTCTTTTTTAAACGAAAGAAATAGTATATTTTGAAGGTATATATATGTTGTGTGGACACATTATTATTTATAATTATGCAATATTTATTATGTCTACGTGGACACATATATACTTTTAAAATACATTATTAAATAATGTAAAGAGTAAAATATCCTTTTTAAAATTTGATATTGTTATAATAACTTCGATCAAAATTTAAATATACTTAAAACTTCCTTCTTTTTTTTCATTTCCTTACCAAATTGGCTCTTTGAAGTTAGATTTGAGCATGAATTGGACAAATAATAAATGTTATAAGTAGATATTAGAACTCAATAATTTTCATAATGTACATTGGAATGACAATGATATGTTGGGACTTTGTCGCATTGGTATTTTTTTCTGTCTTTTTATTAAAAGAGATTTATATAGAAAAAGACTAATCAAAGTTGACATTCTATAGATTAATTTAAATGTTATCAACTCTCTAGGTTTTAATTATTTATTTTCTGTTTATTTAAAAAAAATATTTTTTTTAACATTTTAATTTTTCACTTGCATGTTTCATATCATAAGATTAAAAAATATTTTACTATATTATGCATATCTAAAGTTTAAGGCCACGTTACTTTCTCAACTCAATATCAAGTTAAAAACGGATAAACAAACTGCAAAGAGGTGTGATAACTTCAACACCAACATTAAATTCAATATAATTTCATAAGTCGAATGTATAAAAAATATAATATGCAAAACTTACCCTTATTTTTGTGATAATAGATAAATTATAATTGCAGACTCGCAGCTCAATTTTTTTTAAAAAGCAATTGAAGTAGTTTTACTTTAATCATAATTTTCTAAAATATCCTGAATTATTAATATCTAAGGCATTAATTTTGATAATTCCTTTGCCAACTGTTTTATTGTAGGTGACAGGTTGTGACTTGTTAGGCTGATGGCTCTACTAGCTGCACAATATTCTGCACATTTTTGGAGTATCATTCAACAAGTGTTTCTTTCTTACCCATTGCGTTTTTGCTGGTAAAAATATTGCACCTTTAATCATAATTTTAGAATTTGAATCGTGAACATGAAAAAGATTTTTTTGAGAGTGTCATTTTCAAATTATAAATCTTACGGTGTACAATCTGAAATTAGTCAGAGCTCTAATGTGGAGTTCGGCATCAGATAAAAAATAGTAAAAGAAAGTGTTTCTTCATCTTTATAGTTGTATGATAAATTGATAATGTTTAATTAGCATTCTTATTTGTCTACTATTTTTAAAAATTAATTTTATTTCTATTTATTATTTTAAGAAAAAATAATTATTTTTTCTTACTTTTAGCATTAGTTTTTTATTTTCAAAGAAGAAAAAAAGAGGTTACATGCATGAGTTTGTTTATCCAATTATTAGTCTTAAAATAATAATAATACTTGTGTAGGCTCCTCCTATACTATATGCTTTCTAGCTGAATGTTTTTGACTGTCTTTCTTCATCTGCATGCATGTATGGGTGCAATTATTATTATTTTTCTTCCAATTAATTATGTCTAGACATGTAGGCTTTTAATATCTCATTAAATTACAACTTAAATTTAAAAAAAAATAAAAAAAAGTTAACTGTTTTCACACATGGAGATTGAATTTTCTTCCTTCCCTCCAAAGTCCAAACCAAATATTCACATAGAGAAAAAAAAAAGTTTTCTTTGTTATTTATGTTCTTTCCTTTAAATTTGTGTGTTATGTACTATTGATCGATCTCGAATTATTTTGTTATTGTTATTGTCACTTTCTTATATTTTATTTTTCAAATAATTTAAATATTAAATATTTTATTTTTAGATAAAGAGACAAAATATGATATGATTTATGTATACTCTGCTCTAAAGCCGTCAATATAGGTTAGGTCTGTTGGGTCTGCCTTGGCCTAACTCGGAATTTAATAGGATTAGACTACAATTTTTGGAGCCCATTTGAGAGAAGAGCTTTTTAGCCCGGCTCAAATAAGCTTGCTGATTTGTGGAACTTGGGAAATATCGATAGGGCCAGCTTTTGGGCTAATAAAAATTAATTAAAAAATATAATATAATATTAAAATTTAAAATTAAAGAGAGTTCAAATTCAAAAAAGTTATGTTAATATTTCTATCTAGGTGTTTATACTTTATTTTTTAAAAAAAACTTAATAAATATTATAAAGATAATTTATTTGTGGATTTGATTAAAAACTAGTAACATTAACATCATGTAATATTATTTTATCGATATTTATGATAATATTTTTAAATTATAATTTATAATTTAATTTTAATAATTCTAAAAATAATATAATTTTAAAAAAATTGAGCTGGTCCGACAAGCCTGTAGCCCACGTACTTGTGGGTTGGGCCGACCGTTTTCTAGCTCACACCAAAAATGGGCTAACTCGATCTGACCTGTAATATGTCGAAGCCTGTATGGATTAGCTCGAATGGGTGAACTAGCCCATATTGATAGCTCTACTCTTTTTAAATTGTACTTGTGAAATTATATTGAATATGTTATTATTATTGAATGAGAAGAAGGAAAAAGTTAAAAGAGAAATAAGAACCAAAAACATGATAAATTCAAATACTTGCATATATAAATTATTCATAGACTCATAATTCATACCTCATAATTGTCTATTACAGATCTTGTGGAGGAAATTGAATTACAAGATTAAAACACTTAATTTTCACTATAGATTTATGTATAAATTTTGTAGTATTTAATCGAAAATATTAATTAAACGATTTATTACAAGCTTTTTGTTGAGAGAAACGGATGATGCACATTTCAGTATTTATATACATTATTATATATATAATTATACAAGATTTATATATAGTATACTTTTTTATGAATGGATCTTATCTGTTTATTTTCAACCGATTGTACTATTTATATATTTATGGACCCAACCTTATAACTATTTTCAACTAACTTATAAAAATATTAGAAAAAAATTTATGTATTTAAAAATTACATGAGAATTAATAATAAGTCAACTAATCATTTTAAAAATTTTCCTCTTCTAGAGAGATTTGAATATTGGATATCAAGTCTTTGGATATTACATATATTATTTAATATGCATCAAATTGAAGGTGCCCCCTACCCTACCCTATCAACACAATTTCTTTTACTAATATCTTGTTTTTGAGGGAGAAAAAGTTTGTTTCCAAAATGTACAAAAAGTGAATAGAAAACTAAAATCAAGAGGAAAATATTAAACTACATAAACCAACGACTCCATGCAGACCTTGATCTATTTGGTTGTCTTTAATTGAAAAAATGTGATGATTAGACTTTTAAAGGTTTTTTTGGTCGATCGTATTAGAAGAAATATTTTGTGTTATGTGTAATTTTTTTAATATTATGTTTGATAGAAATTTGGGGAAGGGAATCCACAGGAAGAAACAGAAGCATAAGTGTATGTATAACTAATTCATGAATTTATAAGATATATTATTAATAGGCTTAAGTTATCTGCAGCCCCTTAAAATTGTCCGCAAAATTCGCTTAGACATCTTAACATGTTCATTTTTCTATTAGACACTCAAACCTTAAAAAATAAGTACATATCAAACATTTTTTAAAGACCTGGTCAAAAGAGAAAGTGTGTGTAATGCATATGCAACTGATGTGACAAAATAACAAATCAAATGAAGACATGTGACATTTAAATTTAAAATAATTCTATAAATGAATTTTGAAAATAAAAGAATCTAAATAAATTTTAAAAAAAAGAATTTCAATTTTTTTTTAAAAAAAAGAAAAATTCATGTTACCACCCTCACACCCATCTGCACCCTCACCACCTCAAATCTTTCCTTTTCTTCTCTCACTAAAATCACCTCTTGTCCATCGTTGTTATTTTCCAAATGGAAATTTAAATATATACTAAGTATGAATTTATCTTCTTTTGTTTTCTTTAGTTCTCTTCATGTTTTTTTTTTGTTCCTATTTCAAAATTGGTAGTATATTTTTTCTTATAAAAAAGAATATGTTCAGTGTCTTTTTGTTTTGATTTAAATTTACTTTATGTTCTTGTTTTGTAATGAAGAAAGAAGGGGTGTGAACCTGAAGCTGTGTGTGTGAACTCTATATTTTCCGGGGGCCTCCATATTTTTCGGCAAAATAAAAATGGTGATGTCCATTATTTTCGGCAAGAAAACTTAGATTATATTCTTTCATTTTTTATAACAAAGGAAATAAATACTTACATTTCTTATTAAATTTAAGCATAAGTGTAACGACTTGTTAGTCGTTTTGAGCAGCAAATTTTATTTTTGGAAAAACTGGCTGAGACGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTTGAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAATTTTGGATACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGATCCTTTAGTGAAATTTAGTCTCTGAAATTTGTGACGGAAGCAGAAGGACGGACCGTCGCAG</genome_strand>
        <mrna_strand>CTTGATGAGAATTTGTCTTATGAGGAGGAGCCTGTTGCCATTTTAGATAGAGAAGTCCGCAAATTGAGGTCAAGGGAGATTGCATCTATCAAAGTTCAATGGAAGAATCGACCAGTTGAAGAATCCACTTGGGAGAAGGAAGTTGATATGCGAGAAAGATACCCATACCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTTCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGTAACAGATTTTATTTCTGGAAAAACTGACTGAGACGACGGATCCCACGACGGACCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGACCCTTGGTAAAAATCTAGTCTCTGAACTCTGTGACGGACG-TGCAGGACGGACCGTCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="109753" stop="90874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91809" g_stop="91594" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91593" i_stop="91480" i_length="114">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91479" g_stop="91174" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="515" r_length="305" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91809" e_stop="91594"/>
          <exon e_start="91479" e_stop="91174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAGGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACATTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCATGATAGTATA-TGAGGAGCGGAGTGTCACGTACCAACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATGTTAATATACTCAATCTAATGAATCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAG..................................................................................................................GATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATG-AATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="92951" stop="93728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93251" g_stop="93427" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93251" e_stop="93427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAAACATATCCTCCAACACTTGAATAGTTCTCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="104993" stop="106304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105293" g_stop="106004" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105293" e_stop="106004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105513" stop="106770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105813" g_stop="106470" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105813" e_stop="106470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="-" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="107606" stop="105601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107306" g_stop="107133" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107132" i_stop="106392" i_length="741">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106391" g_stop="105865" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107306" e_stop="107133"/>
          <exon e_start="106391" e_stop="105865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGTATACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACTATGGCATCGATGTCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTTCGGAGGTTACTCAGTCCGACCAATTCAGTCTTCTACAGACTGTAGTTGGGGGTCCGCCTCAGACCGTCAACACTTCTCTGAGGGACCTATGCTTGAATCCAGAGGGTGTTATGGATGTGGGGAAACTGGACACATTAAGAGGTATTGTCCAAAACAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGCTGTCATTCTGGTGGACGCGGTGGTCGAAGTAATGGTGGTCACTAAAACGGTCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACAAGGTAGGGCCAACGGACAAACAAACGAAAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCAGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGTTCCACATTTTCTTATGTATCTTCTTCATTTGCTAATGGTCTAAATTTACCTTGTGAATTACTTGACATACCTATTCGTGTTTTTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGAATTTTATGGGGAGAAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAAGCCGATACGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTCGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCTGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTCTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGAAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTC-TTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGA-TTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105582" stop="106938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105882" g_stop="106638" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105882" e_stop="106638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAA-GAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGA-ACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="105984" stop="106910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106284" g_stop="106614" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106284" e_stop="106614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0188O11-r0I8c/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C12HBa0188O11.1" temp_strand="+" temp_description="C12HBa0188O11.1  AC234113.1 htgs_phase:2 submitted_to_sgn_as:C12HBa0188O11*** upload_account_name:italy SEQUENCING IN PROGRESS ***">
        <position start="107268" stop="108301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107568" g_stop="108000" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0188O11.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0188O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107568" e_stop="108000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4350" PGL_stop="6918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4350" e_stop="4520"/>
            <exon e_start="5698" e_stop="5781"/>
            <exon e_start="6144" e_stop="6226"/>
            <exon e_start="6362" e_stop="6918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4350" e_stop="4520" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="4521" i_stop="5697" i_length="1177"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5698" e_stop="5781" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="5782" i_stop="6143" i_length="362"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6144" e_stop="6226" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6227" i_stop="6361" i_length="135"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="6362" e_stop="6918" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4350" stop="4520"/>
              <exon start="5698" stop="5781"/>
              <exon start="6144" stop="6226"/>
              <exon start="6362" stop="6918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAGTGATAAGGAGATATTTTTCAAAAAAAAAAAAGATGGCCGGATTGTCACAAGATTGGGAGCCGGTGGTGATTCGCAAGAAAGCGCCGACCGCCGCCGCACGGAAAGATGAGAAAGCAGTCAACGCCGCCCGTCGAGCCGGTGCCGAAATCGAAACCGTCAGAAAAG : CTACTGCTGGGTCAAACAAGGCTGCCTCTAGTAGCACAACGTTGAACACGAGAAAGCTGGATGAAGATACTGAGAATCTGTCAC : ATCAAAAGGTACCTACTGAACTGAAGAAAGCGATTATGCAAGCTCGACAGGATAAGAAGCTTACTCAGTCTCAACTTGCCCAA : TTGATAAACGAAAAACCACAGATCATTCAAGAGTATGAATCTGGAAAGGCAATTCCAAACCAACAGATAATTTCTAAACTGGAGAGAGCTCTTGGTGCGAAACTTCGTGGAAAGAAATAAACTGCAAAAGTGATGGTGGTGGTGGTGGGGTGTGTGTGTGTGTGTGAACCTTTTGAACGTCTACATCGTTTGGGTTCTAAGTGTGGTCATGTACATGAGCCTTTTGAATGTTTTCTTTAGCCAGTAAGGTGGTTCTTGTGTCTGGATTCGGGACGTTACTTTCGTTGTTAAAACTGAATGTTTTTCCTGTCGAAAATGGATGTGCTTGCTCTTGCTAGATGTTTAAGGATTGCAATTAGGACAATTCAGCAAATTTGATTATCCAGACATCTTAATCTTAATGAACATGATTGTTCACAAGATATAAAGTTTATTTTGCCATACCAACGTCCTTTGCATTTAGGAATTGTTAAGTTACTAATTCAGATTAAAAGATGAGAATTGGTTAATGACCTTAAAATAGATCAGTTACATTATGTAATTGTATTTCTTTTTGT</gDNA_template>
            <first_frame> K  Q  *  *  G  D  I  F  Q  K  K  K  R  W  P  D  C  H  K  I  G  S  R  W  *  F  A  R  K  R  R  P  P  P  H  G  K  M  R  K  Q  S  T  P  P  V  E  P  V  P  K  S  K  P  S  E  K  :  L  L  L  G  Q  T  R  L  P  L  V  A  Q  R  *  T  R  E  S  W  M  K  I  L  R  I  C  H  :  I  K  R  Y  L  L  N  *  R  K  R  L  C  K  L  D  R  I  R  S  L  L  S  L  N  L  P  N :   *  *  T  K  N  H  R  S  F  K  S  M  N  L  E  R  Q  F  Q  T  N  R  *  F  L  N  W  R  E  L  L  V  R  N  F  V  E  R  N  K  L  Q  K  *  W  W  W  W  W  G  V  C  V  C  V  N  L  L  N  V  Y  I  V  W  V  L  S  V  V  M  Y  M  S  L  L  N  V  F  F  S  Q  *  G  G  S  C  V  W  I  R  D  V  T  F  V  V  K  T  E  C  F  S  C  R  K  W  M  C  L  L  L  L  D  V  *  G  L  Q  L  G  Q  F  S  K  F  D  Y  P  D  I  L  I  L  M  N  M  I  V  H  K  I  *  S  L  F  C  H  T  N  V  L  C  I  *  E  L  L  S  Y  *  F  R  L  K  D  E  N  W  L  M  T  L  K  *  I  S  Y  I  M  *  L  Y  F  F  L  </first_frame>
            <second_frame>  S  S  D  K  E  I  F  F  K  K  K  K  D  G  R  I  V  T  R  L  G  A  G  G  D  S  Q  E  S  A  D  R  R  R  T  E  R  *  E  S  S  Q  R  R  P  S  S  R  C  R  N  R  N  R  Q  K  S :   Y  C  W  V  K  Q  G  C  L  *  *  H  N  V  E  H  E  K  A  G  *  R  Y  *  E  S  V  T :   S  K  G  T  Y  *  T  E  E  S  D  Y  A  S  S  T  G  *  E  A  Y  S  V  S  T  C  P   : I  D  K  R  K  T  T  D  H  S  R  V  *  I  W  K  G  N  S  K  P  T  D  N  F  *  T  G  E  S  S  W  C  E  T  S  W  K  E  I  N  C  K  S  D  G  G  G  G  G  V  C  V  C  V  *  T  F  *  T  S  T  S  F  G  F  *  V  W  S  C  T  *  A  F  *  M  F  S  L  A  S  K  V  V  L  V  S  G  F  G  T  L  L  S  L  L  K  L  N  V  F  P  V  E  N  G  C  A  C  S  C  *  M  F  K  D  C  N  *  D  N  S  A  N  L  I  I  Q  T  S  *  S  *  *  T  *  L  F  T  R  Y  K  V  Y  F  A  I  P  T  S  F  A  F  R  N  C  *  V  T  N  S  D  *  K  M  R  I  G  *  *  P  *  N  R  S  V  T  L  C  N  C  I  S  F  C </second_frame>
            <third_frame>   A  V  I  R  R  Y  F  S  K  K  K  K  M  A  G  L  S  Q  D  W  E  P  V  V  I  R  K  K  A  P  T  A  A  A  R  K  D  E  K  A  V  N  A  A  R  R  A  G  A  E  I  E  T  V  R  K   : A  T  A  G  S  N  K  A  A  S  S  S  T  T  L  N  T  R  K  L  D  E  D  T  E  N  L  S   : H  Q  K  V  P  T  E  L  K  K  A  I  M  Q  A  R  Q  D  K  K  L  T  Q  S  Q  L  A  Q  :  L  I  N  E  K  P  Q  I  I  Q  E  Y  E  S  G  K  A  I  P  N  Q  Q  I  I  S  K  L  E  R  A  L  G  A  K  L  R  G  K  K  *  T  A  K  V  M  V  V  V  V  G  C  V  C  V  C  E  P  F  E  R  L  H  R  L  G  S  K  C  G  H  V  H  E  P  F  E  C  F  L  *  P  V  R  W  F  L  C  L  D  S  G  R  Y  F  R  C  *  N  *  M  F  F  L  S  K  M  D  V  L  A  L  A  R  C  L  R  I  A  I  R  T  I  Q  Q  I  *  L  S  R  H  L  N  L  N  E  H  D  C  S  Q  D  I  K  F  I  L  P  Y  Q  R  P  L  H  L  G  I  V  K  L  L  I  Q  I  K  R  *  E  L  V  N  D  L  K  I  D  Q  L  H  Y  V  I  V  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4352" stop="4520"/>
                    <exon start="5698" stop="5781"/>
                    <exon start="6144" stop="6226"/>
                    <exon start="6362" stop="6481"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVIRRYFSKKKKMAGLSQDWEPVVIRKKAPTAAARKDEKAVNAARRAGAEIETVRKATAGSNKAASSSTTLNTRKLDEDTENLSHQKVPTELKKAIMQARQDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIISKLERALGAKLRGKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18117" PGL_stop="18771"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18117" e_stop="18771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="18117" e_stop="18771" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18117" stop="18771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATATTAATCAGGTTCTTGCTTATTTTAGCGGGTTATCTGATCAAGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGGAGTACAACATGCAGCTGTTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGATTGACTACAAGACCTATAATGACAAGTGATCAGCACGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTTCTGTCTTCAAGGGTGCTGAATTTGAGGATGCTTATGATTTTTTGGTTGATTGTCATGAGCTGCTATATAAGATGTGCATAGTGAAACGATTTGGTGTTGATTTTGTAACCTATCAGTTTCAGGGAAATGCCAAAATGTGGTGGCGATCGTATGTTGAGTGTCAACCAGCACAGGCACCACCCATGACTTGGGCATCATTCTCTAGCTTGTATATGGAGAAGTATATGCCCCGGACTTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGCCTCGAGCAAGGCAGGGTGTCGGTTACTGCGTATGAGGCTAAGTTTCGTGTATTATCTAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGATTTGCAGATTCCAGCCTTACAGGTATCT</gDNA_template>
            <first_frame> R  Y  *  S  G  S  C  L  F  *  R  V  I  *  S  R  P  D  T  S  S  V  F  C  T  S  T  S  G  F  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  N  R  H  V  S  S  I  D  Y  K  T  Y  N  D  K  *  S  A  R  T  F  Q  *  V  L  E  I  E  T  F  C  L  Q  G  C  *  I  *  G  C  L  *  F  F  G  *  L  S  *  A  A  I  *  D  V  H  S  E  T  I  W  C  *  F  C  N  L  S  V  S  G  K  C  Q  N  V  V  A  I  V  C  *  V  S  T  S  T  G  T  T  H  D  L  G  I  I  L  *  L  V  Y  G  E  V  Y  A  P  D  F  E  G  *  E  E  R  *  V  P  E  P  R  A  R  Q  G  V  G  Y  C  V  *  G  *  V  S  C  I  I  *  V  C  H  P  A  L  L  Q  S  T  R  A  D  S  P  F  C  E  G  I  E  V  R  F  A  D  S  S  L  T  G  I  </first_frame>
            <second_frame>  D  I  N  Q  V  L  A  Y  F  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  S  G  V  Q  H  A  A  V  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  R  P  I  M  T  S  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  S  V  F  K  G  A  E  F  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  Y  K  M  C  I  V  K  R  F  G  V  D  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  P  M  T  W  A  S  F  S  S  L  Y  M  E  K  Y  M  P  R  T  L  R  D  R  R  R  D  E  F  L  S  L  E  Q  G  R  V  S  V  T  A  Y  E  A  K  F  R  V  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  S </second_frame>
            <third_frame>   I  L  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  *  L  Q  D  L  *  *  Q  V  I  S  T  N  F  S  V  S  S  *  N  *  N  L  L  S  S  R  V  L  N  L  R  M  L  M  I  F  W  L  I  V  M  S  C  Y  I  R  C  A  *  *  N  D  L  V  L  I  L  *  P  I  S  F  R  E  M  P  K  C  G  G  D  R  M  L  S  V  N  Q  H  R  H  H  P  *  L  G  H  H  S  L  A  C  I  W  R  S  I  C  P  G  L  *  G  I  G  G  E  M  S  S  *  A  S  S  K  A  G  C  R  L  L  R  M  R  L  S  F  V  Y  Y  L  G  M  P  P  S  F  A  S  V  H  K  S  G  F  A  V  L  *  R  D  *  G  Q  I  C  R  F  Q  P  Y  R  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18118" stop="18771"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DINQVLAYFSGLSDQGQTPPVFSAPAPQVSGVQHAAVVAPRMDASLEIGTFPRLTTRPIMTSDQHELFSKFLKLKPSVFKGAEFEDAYDFLVDCHELLYKMCIVKRFGVDFVTYQFQGNAKMWWRSYVECQPAQAPPMTWASFSSLYMEKYMPRTLRDRRRDEFLSLEQGRVSVTAYEAKFRVLSRYATQLCFSPQERIRRFVKGLRSDLQIPALQVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19682" PGL_stop="19351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19682" e_stop="19351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="19682" e_stop="19351" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19682" stop="19351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTGTCCCAGGCTTGGCCAATGTCACAGTTTTGGCATTACAATCTAAGATTGCAAAGTTTGGAGAAAGCCAAGTCATACCCAAAATTACATCTAAAATCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCATAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCAGCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATTAGGAAGATAAATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGCAATCACAAAACAA</gDNA_template>
            <first_frame> N  L  S  Q  A  W  P  M  S  Q  F  W  H  Y  N  L  R  L  Q  S  L  E  K  A  K  S  Y  P  K  L  H  L  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  I  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  S  G  V  E  T  R  I  S  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  *  E  D  K  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  N   </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  C  H  S  F  G  I  T  I  *  D  C  K  V  W  R  K  P  S  H  T  Q  N  Y  I  *  N  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  *  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  A  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  I  R  K  I  N  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  T  </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  I  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  Q  R  S  R  N  T  N  K  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  L  G  R  *  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  A  I  T  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0188O11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="19381" PGL_stop="20042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19381" e_stop="20042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="19381" e_stop="20042" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19381" stop="20042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATTTATCTTCCTAATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGCTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTATGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGATTTTAGATGTAATTTTGGGTATGACTTGGCTTTCTCCAAACTTTGCAATCTTAGATTGTAATGCCAAAACTGTGACATTGGCCAAGCCTGGGACAGATTTGTTAGTGTGGGAGGGTGACTACACTCCCACTCCAGTTCGTATCATCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCGTGAGTTTCAAGATGTGTTTCCGGCAGACCTTCCTGGTATACCACCAGATAGAGATATTGATTTCTGTATTGATCTGGAGCTGGGTACTCGCCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTAAGGGAGTTAAAGGCCCAAGTTCAAAAGTTGTTAGGGAAAGGCTTTATTAGACCAAGTGCATCCTCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  L  S  S  *  F  A  T  G  L  N  L  H  C  E  L  L  D  M  L  I  R  V  S  T  P  L  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  M  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  R  C  N  F  G  Y  D  L  A  F  S  K  L  C  N  L  R  L  *  C  Q  N  C  D  I  G  Q  A  W  D  R  F  V  S  V  G  G  *  L  H  S  H  S  S  S  Y  H  L  L  S  S  C  *  E  N  G  *  *  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  *  V  S  R  C  V  S  G  R  P  S  W  Y  T  T  R  *  R  Y  *  F  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  N  G  S  R  *  V  K  G  V  K  G  P  S  S  K  V  V  R  E  R  L  Y  *  T  K  C  I  L  L   </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  I  Y  L  P  N  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  I  L  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  L  L  V  W  E  G  D  Y  T  P  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  S  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  Q  D  V  F  P  A  D  L  P  G  I  P  P  D  R  D  I  D  F  C  I  D  L  E  L  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  V  Q  K  L  L  G  K  G  F  I  R  P  S  A  S  S  W  </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  F  I  F  L  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  A  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  Y  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  F  *  M  *  F  W  V  *  L  G  F  L  Q  T  L  Q  S  *  I  V  M  P  K  L  *  H  W  P  S  L  G  Q  I  C  *  C  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  F  F  V  L  R  E  W  L  V  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  V  S  F  K  M  C  F  R  Q  T  F  L  V  Y  H  Q  I  E  I  L  I  S  V  L  I  W  S  W  V  L  A  P  F  P  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  P  K  F  K  S  C  *  G  K  A  L  L  D  Q  V  H  P  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19574" stop="20041"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWLILDVILGMTWLSPNFAILDCNAKTVTLAKPGTDLLVWEGDYTPTPVRIISFLRAKRMVSKGCLAFLAHLRDDTTQVPSIESVSIVREFQDVFPADLPGIPPDRDIDFCIDLELGTRPISIPPYRMAPAELRELKAQVQKLLGKGFIRPSASSW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21930" PGL_stop="20899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21930" e_stop="20899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="21930" e_stop="20899" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21930" stop="21389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21485" stop="20899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGCATGCAATGTTCTCCAAAATTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAAGTTTGGCTAACTTCTCCGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATATGTCAACAATTACCCAAATGGAGTCATACTTACCCATTGTCTTTGGAAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATAGACATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACCTGCTGACAATTCGGGCATTAAGCAACAAAATCAACAATGTCACGTTTCATCCTACTCCACCAAAAATGTTGTTTTAGATCACGATACATCTTGGTTGCACCAGGGTGTATAGAATACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAATCATCGATGCGGGGTACACATACCCTTCCCTTAATTATCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCGTAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATTCTCCCTGCCTTTCTACTTAAAGCATCTTCCACAACATTAGCTTTTCCCGAATGATACAAGATAGTGATATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCGTATAGACTTCACATTTAACCCCATATAGATAATGTCTCCATTGCTTTAATGCAAACACTATCGCAGCCAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  L  Q  N  L  E  V  N  C  V  P  L  S  D  I  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  S  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  M  S  T  I  T  Q  M  E  S  Y  L  P  I  V  F  G  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  I  D  I  L  *  S  V  P  P  G  L  W  C  S  Y  F  T  C  *  Q  F  G  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  C  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  M  R  G  T  H  T  L  P  L  I  I  K  T  P  S  L  S  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  Q  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  V  K  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  W  A  R  L  P  I  L  P  A  F  L  L  K  A  S  S  T  T  L  A  F  P  E  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  V  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  I  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  R  H  A  M  F  S  K  I  *  K  *  T  A  Y  L  Y  L  I  *  W  K  V  E  L  H  A  I  E  Q  F  L  R  C  K  V  W  L  T  S  P  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  I  C  Q  Q  L  P  K  W  S  H  T  Y  P  L  S  L  E  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  *  T  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  A  D  N  S  G  I  K  Q  Q  N  Q  Q  C  H  V  S  S  Y  S  T  K  N  V  V  L  D  H  D  T  S  W  L  H  Q  G  V  *  N  T  L  N  Y  E  P  L  *  E  *  C  E  S  N  H  R  C  G  V  H  I  P  F  P  *  L  S  K  H  L  P  Y  R  F  L  L  L  *  P  L  L  A  T  P  Y  L  G  S  R  S  V  S  H  R  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  K  P  K  I  L  P  S  H  L  L  L  A  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  G  L  D  F  P  F  S  L  P  F  Y  L  K  H  L  P  Q  H  *  L  F  P  N  D  T  R  *  *  Y  H  S  P  S  V  V  P  S  I  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  I  *  P  H  I  D  N  V  S  I  A  L  M  Q  T  L  S  Q  P  T  P  N  R  G  S  D  N  Y  V  H  A  P  L  I   </second_frame>
            <third_frame>   G  M  Q  C  S  P  K  F  R  S  K  L  R  T  S  I  *  Y  N  G  K  W  N  S  M  Q  S  N  N  F  *  D  V  K  F  G  *  L  L  R  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  Y  V  N  N  Y  P  N  G  V  I  L  T  H  C  L  W  K  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  R  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  A  L  S  N  K  I  N  N  V  T  F  H  P  T  P  P  K  M  L  F  *  I  T  I  H  L  G  C  T  R  V  Y  R  I  P  *  T  M  S  L  C  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  Y  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  Q  H  L  I  S  D  P  D  Q  F  L  I  G  K  L  L  S  F  N  L  I  K  K  G  R  S  C  L  H  T  S  Q  K  S  S  L  L  I  Y  F  *  P  R  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  G  *  T  S  H  S  P  C  L  S  T  *  S  I  F  H  N  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  S  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  R  I  D  F  T  F  N  P  I  *  I  M  S  P  L  L  *  C  K  H  Y  R  S  Q  L  Q  I  V  G  R  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21465" stop="21226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSMRGTHTLPLIIKTPSLSIFASLASPRNTLSRIQISFSSVNCFPLILSRKEDLASTQAKNPPFSFTSSLVKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21493" stop="21254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMSLCKNSVNQIIDAGYTYPSLNYQNTFLIDFCFFSLSSQHLISDPDQFLIGKLLSFNLIKKGRSCLHTSQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21763" stop="21539"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVNNYPNGVILTHCLWKTNHEVHCNSLPLPFRNRHSLKCPSRPLVFILYLLTIRALSNKINNVTFHPTPPKMLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26875" PGL_stop="26330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26875" e_stop="26330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="26875" e_stop="26330" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26875" stop="26330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26765" stop="26397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCTTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATATTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGTATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  L  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  F  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  *  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  W  I  *  Y  D  A  Q  N  H  *  E  F  T  W  T  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  F  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  V  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  I  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  L  R  R  K  L  C  M  K  N  Y  L  Y  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  L  D  L  I  *  C  A  K  S  L  R  I  H  M  D  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26874" stop="26332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCFLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPVFSSGLYYTSISTVESHAVVNKRFTNFNDFIIWHDRLGHPGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="28171" PGL_stop="27409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28171" e_stop="27409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="28171" e_stop="27409" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28171" stop="27409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTATCTCATAATTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGCCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAAATTGAATATTTGACGGTAAAAGATCCACTTGAGTTGTGGACTGACTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCCCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTAAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTACAGCAACAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATTTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAGATGATCATCGGGGCTATAATAATGCACGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  Y  L  I  I  S  L  C  R  I  Y  P  N  L  S  L  C  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  K  L  *  F  S  F  V  I  I  L  M  R  A  *  K  L  N  I  *  R  *  K  I  H  L  S  C  G  L  T  *  R  G  D  M  T  T  *  R  Q  Q  C  C  Q  E  P  V  M  S  G  C  I  Y  G  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  G  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  S  M  P  Q  M  *  Y  Y  S  N  N  I  V  K  R  V  F  R  N  I  L  N  *  F  H  V  F  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  I  G  A  I  I  M  H  G  D  V  A  </first_frame>
            <second_frame>  T  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  D  S  H  I  I  S  *  F  H  Y  V  E  F  I  Q  T  *  V  C  A  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  S  R  *  G  E  S  Y  D  F  P  S  S  S  S  *  *  G  P  E  N  *  I  F  D  G  K  R  S  T  *  V  V  D  *  L  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  P  L  *  V  D  A  F  T  V  S  R  F  *  D  R  N  *  I  Q  L  C  C  I  Q  D  N  L  P  V  K  I  M  W  G  D  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  P  C  L  K  C  D  I  T  A  T  I  S  *  K  G  F  S  E  I  F  *  T  N  F  M  S  F  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  S  G  L  *  *  C  T  G  T  W  Q </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  L  S  H  N  F  I  M  S  N  L  S  K  L  E  F  V  P  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  D  P  L  E  L  W  T  D  L  K  G  R  Y  D  H  L  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  A  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  S  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  E  V  K  R  D  D  H  R  G  Y  N  N  A  R  G  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28169" stop="27411"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVISTKLLLAKVLYKYFYLIHILSHNFIMSNLSKLEFVPLDISGKNYLSWVLDAEIHLAAKGLDATITQGNEASSQDKAKAMIFLRHHLDEGLKIEYLTVKDPLELWTDLKGRYDHLKATVLPRARYEWMHLRFQDFKTVIEYNSAVFRITSQLKLCGETIKDEDMLEKTLTTFHASNVILQQQYREKGFQKYSELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSEVKRDDHRGYNNARGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="37913" PGL_stop="33910"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37913" e_stop="37740"/>
            <exon e_start="37201" e_stop="37069"/>
            <exon e_start="35481" e_stop="35183"/>
            <exon e_start="34150" e_stop="33910"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37913" e_stop="37740" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37739" i_stop="37202" i_length="538"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37201" e_stop="37069" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.960">
            <gDNA_intron_boundary i_start="37068" i_stop="35482" i_length="1587"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35481" e_stop="35183" e_length="299"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35182" i_stop="34151" i_length="1032"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="34150" e_stop="33910" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37913" stop="37740"/>
              <exon start="37201" stop="37069"/>
              <exon start="35481" stop="35183"/>
              <exon start="34150" stop="33910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327156" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAACTTAGAAATATGGCTAGTGAGAAGGAAAAAATTAAAATTACAAGTGATAAGTATAGGCTATTCTTGCATGAAGATCAAGCTGCTGCTGAAGGAACCATCCAATGGAGACATGGTGATGCTCCAAGTTATGGAAGTGTTAATAAACTCTTTGAAGAAGGAAGGACTAAG : GTTTGGCCAGAAGGATCTCTTGAAGAAACAGTACAAAATGCTATAAAATCATGGGAAATGGAACTTTCACATAAGACTAGAGTAAAAGACTTTAGGACAATTAATCCTCAAAAATTCAAGCTCTTCGTAAATG : GAAGAGACGGATTGTCCGCGGAAGAGACGTTGAAAGTGGGAAGCTACAATGCGCTATTGAAGAGTTCAATGCCAAATGAATTCAAATATTACAAAGCAGATGAAGAGACATTTGAATCATCCCACAATGCTTTTAGATCAGCTTTTCCAAGAGGATTTGCTTGGGAAGTGATCAGTGTATACACAGGGCCACCAATTATTACATACAAATTCAGACATTGGGGTTTCTTTGAAGGTCCATTTAAAGGACATGCCCCTACTGGCAACATGGTCCAATTCTATGGCCTTGGTATATTGAAG : GTTGATGAATCACTAAGAGCAGAGGATGTAGAGGTATATTATGATCCAACGGAACTTTTTGGTGAACTACTCAAAGGACCAAAAATTTCTGAATCTAATGTTGAGCACCACTAGTCATGGTTTATTGATTTTATGAAGTTTTTTTTTTTATGTTTTTTCATAAAATAAACTTTCTCTGTTTGGATCGCACAATATTACAATACAATGTTACAAAGTTTGTTTGGATTGATTTATTTGAAGT</gDNA_template>
            <first_frame> *  K  L  R  N  M  A  S  E  K  E  K  I  K  I  T  S  D  K  Y  R  L  F  L  H  E  D  Q  A  A  A  E  G  T  I  Q  W  R  H  G  D  A  P  S  Y  G  S  V  N  K  L  F  E  E  G  R  T  K  :  V  W  P  E  G  S  L  E  E  T  V  Q  N  A  I  K  S  W  E  M  E  L  S  H  K  T  R  V  K  D  F  R  T  I  N  P  Q  K  F  K  L  F  V  N   : G  R  D  G  L  S  A  E  E  T  L  K  V  G  S  Y  N  A  L  L  K  S  S  M  P  N  E  F  K  Y  Y  K  A  D  E  E  T  F  E  S  S  H  N  A  F  R  S  A  F  P  R  G  F  A  W  E  V  I  S  V  Y  T  G  P  P  I  I  T  Y  K  F  R  H  W  G  F  F  E  G  P  F  K  G  H  A  P  T  G  N  M  V  Q  F  Y  G  L  G  I  L  K  :  V  D  E  S  L  R  A  E  D  V  E  V  Y  Y  D  P  T  E  L  F  G  E  L  L  K  G  P  K  I  S  E  S  N  V  E  H  H  *  S  W  F  I  D  F  M  K  F  F  F  L  C  F  F  I  K  *  T  F  S  V  W  I  A  Q  Y  Y  N  T  M  L  Q  S  L  F  G  L  I  Y  L  K  </first_frame>
            <second_frame>  K  N  L  E  I  W  L  V  R  R  K  K  L  K  L  Q  V  I  S  I  G  Y  S  C  M  K  I  K  L  L  L  K  E  P  S  N  G  D  M  V  M  L  Q  V  M  E  V  L  I  N  S  L  K  K  E  G  L  R :   F  G  Q  K  D  L  L  K  K  Q  Y  K  M  L  *  N  H  G  K  W  N  F  H  I  R  L  E  *  K  T  L  G  Q  L  I  L  K  N  S  S  S  S  *  M  :  E  E  T  D  C  P  R  K  R  R  *  K  W  E  A  T  M  R  Y  *  R  V  Q  C  Q  M  N  S  N  I  T  K  Q  M  K  R  H  L  N  H  P  T  M  L  L  D  Q  L  F  Q  E  D  L  L  G  K  *  S  V  Y  T  Q  G  H  Q  L  L  H  T  N  S  D  I  G  V  S  L  K  V  H  L  K  D  M  P  L  L  A  T  W  S  N  S  M  A  L  V  Y  *  R :   L  M  N  H  *  E  Q  R  M  *  R  Y  I  M  I  Q  R  N  F  L  V  N  Y  S  K  D  Q  K  F  L  N  L  M  L  S  T  T  S  H  G  L  L  I  L  *  S  F  F  F  Y  V  F  S  *  N  K  L  S  L  F  G  S  H  N  I  T  I  Q  C  Y  K  V  C  L  D  *  F  I  *  S </second_frame>
            <third_frame>   K  T  *  K  Y  G  *  *  E  G  K  N  *  N  Y  K  *  *  V  *  A  I  L  A  *  R  S  S  C  C  *  R  N  H  P  M  E  T  W  *  C  S  K  L  W  K  C  *  *  T  L  *  R  R  K  D  *   : G  L  A  R  R  I  S  *  R  N  S  T  K  C  Y  K  I  M  G  N  G  T  F  T  *  D  *  S  K  R  L  *  D  N  *  S  S  K  I  Q  A  L  R  K  W :   K  R  R  I  V  R  G  R  D  V  E  S  G  K  L  Q  C  A  I  E  E  F  N  A  K  *  I  Q  I  L  Q  S  R  *  R  D  I  *  I  I  P  Q  C  F  *  I  S  F  S  K  R  I  C  L  G  S  D  Q  C  I  H  R  A  T  N  Y  Y  I  Q  I  Q  T  L  G  F  L  *  R  S  I  *  R  T  C  P  Y  W  Q  H  G  P  I  L  W  P  W  Y  I  E   : G  *  *  I  T  K  S  R  G  C  R  G  I  L  *  S  N  G  T  F  W  *  T  T  Q  R  T  K  N  F  *  I  *  C  *  A  P  L  V  M  V  Y  *  F  Y  E  V  F  F  F  M  F  F  H  K  I  N  F  L  C  L  D  R  T  I  L  Q  Y  N  V  T  K  F  V  W  I  D  L  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37910" stop="37740"/>
                    <exon start="37201" stop="37069"/>
                    <exon start="35481" stop="35183"/>
                    <exon start="34150" stop="34037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRNMASEKEKIKITSDKYRLFLHEDQAAAEGTIQWRHGDAPSYGSVNKLFEEGRTKVWPEGSLEETVQNAIKSWEMELSHKTRVKDFRTINPQKFKLFVNGRDGLSAEETLKVGSYNALLKSSMPNEFKYYKADEETFESSHNAFRSAFPRGFAWEVISVYTGPPIITYKFRHWGFFEGPFKGHAPTGNMVQFYGLGILKVDESLRAEDVEVYYDPTELFGELLKGPKISESNVEHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="50244" PGL_stop="44925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50244" e_stop="50136"/>
            <exon e_start="48236" e_stop="48102"/>
            <exon e_start="47996" e_stop="47923"/>
            <exon e_start="46932" e_stop="46893"/>
            <exon e_start="46617" e_stop="46572"/>
            <exon e_start="45681" e_stop="45602"/>
            <exon e_start="45338" e_stop="45157"/>
            <exon e_start="44993" e_stop="44925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.104" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50244" e_stop="50136" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50135" i_stop="48237" i_length="1899"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48236" e_stop="48102" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.908">
            <gDNA_intron_boundary i_start="48101" i_stop="47997" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47996" e_stop="47923" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.104" acc_prob="0.941">
            <gDNA_intron_boundary i_start="47922" i_stop="46933" i_length="990"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46932" e_stop="46893" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46892" i_stop="46618" i_length="275"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46617" e_stop="46572" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46571" i_stop="45682" i_length="890"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45681" e_stop="45602" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.975">
            <gDNA_intron_boundary i_start="45601" i_stop="45339" i_length="263"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="45338" e_stop="45157" e_length="182"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45156" i_stop="44994" i_length="163"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="44993" e_stop="44925" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50244" stop="50136"/>
              <exon start="48236" stop="48102"/>
              <exon start="47996" stop="47923"/>
              <exon start="46932" stop="46893"/>
              <exon start="46617" stop="46572"/>
              <exon start="45681" stop="45602"/>
              <exon start="45338" stop="45157"/>
              <exon start="44993" stop="44925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGCTTTGTATCTTGGTCGACACTATCGCCGTGCTTTTCACCTTCTTAATGCTTCTCAAATCGTCCTTCGTGACCTCCGCTTCCGATACCTCGCCGCCAAGTGCCTT : GAAGAACTGAAGGAGTGGGATCAATGCCTTCTAATGCTGGGTGATGCTAAAGTGGATGAACATGGTAATATTACTGATACAAGAGAGTTCAACAGCATGTACTTGGACAAGGATGGTGAAGATCGTGAAATAAAT : ATTTTATCAGCAATCTGCTTTTTGAGGGGCAAGGCATATGAAGCGTTGGAGAATCGTGCACAGGCTCGACTATG : GTATAAAGCTGCTATCAAGGCTGATCCTTTGTGTTATGAG : GCATTGGAATGTCTGATAGAGAATCACATGCTCACTTGTGATGAAG : AGAGAACCCTGCTCTCATGTTTGCAGTTTGGTCCTGAAGATGGGTGGCTTTCTTCATTCTATTCTTGTTTGATAAAGAAG : TATGATAAAGAAAATGTGGTGGAAGCTAAATTTAGAGAGCTGGAACAGAGTGGACCTAATACAAAGCTTTCGGACAAATCTGTTTTGTGTACGCTTAAATCCAACTCTGATCTTTTAGCCTGCAAAGCTGAGTATTATCATCAATGCGGTGAATATCAGAAATGCTTTGAACTAACATCTGA : ATTGCTTGAAAAGGATCCGTTCCACCTCAAGTGTACCCTGGTGCACTTAGCAGCAGCAATGGAGTTGGG</gDNA_template>
            <first_frame> T  S  F  V  S  W  S  T  L  S  P  C  F  S  P  S  *  C  F  S  N  R  P  S  *  P  P  L  P  I  P  R  R  Q  V  P   : *  R  T  E  G  V  G  S  M  P  S  N  A  G  *  C  *  S  G  *  T  W  *  Y  Y  *  Y  K  R  V  Q  Q  H  V  L  G  Q  G  W  *  R  S  *  N  K   : Y  F  I  S  N  L  L  F  E  G  Q  G  I  *  S  V  G  E  S  C  T  G  S  T  M  :  V  *  S  C  Y  Q  G  *  S  F  V  L  *   : G  I  G  M  S  D  R  E  S  H  A  H  L  *  *  R :   E  N  P  A  L  M  F  A  V  W  S  *  R  W  V  A  F  F  I  L  F  L  F  D  K  E   : V  *  *  R  K  C  G  G  S  *  I  *  R  A  G  T  E  W  T  *  Y  K  A  F  G  Q  I  C  F  V  Y  A  *  I  Q  L  *  S  F  S  L  Q  S  *  V  L  S  S  M  R  *  I  S  E  M  L  *  T  N  I  *  :  I  A  *  K  G  S  V  P  P  Q  V  Y  P  G  A  L  S  S  S  N  G  V  G </first_frame>
            <second_frame>  Q  A  L  Y  L  G  R  H  Y  R  R  A  F  H  L  L  N  A  S  Q  I  V  L  R  D  L  R  F  R  Y  L  A  A  K  C  L  :  E  E  L  K  E  W  D  Q  C  L  L  M  L  G  D  A  K  V  D  E  H  G  N  I  T  D  T  R  E  F  N  S  M  Y  L  D  K  D  G  E  D  R  E  I  N  :  I  L  S  A  I  C  F  L  R  G  K  A  Y  E  A  L  E  N  R  A  Q  A  R  L  W :   Y  K  A  A  I  K  A  D  P  L  C  Y  E  :  A  L  E  C  L  I  E  N  H  M  L  T  C  D  E   : E  R  T  L  L  S  C  L  Q  F  G  P  E  D  G  W  L  S  S  F  Y  S  C  L  I  K  K  :  Y  D  K  E  N  V  V  E  A  K  F  R  E  L  E  Q  S  G  P  N  T  K  L  S  D  K  S  V  L  C  T  L  K  S  N  S  D  L  L  A  C  K  A  E  Y  Y  H  Q  C  G  E  Y  Q  K  C  F  E  L  T  S  E :   L  L  E  K  D  P  F  H  L  K  C  T  L  V  H  L  A  A  A  M  E  L   </second_frame>
            <third_frame>   K  L  C  I  L  V  D  T  I  A  V  L  F  T  F  L  M  L  L  K  S  S  F  V  T  S  A  S  D  T  S  P  P  S  A  L :   K  N  *  R  S  G  I  N  A  F  *  C  W  V  M  L  K  W  M  N  M  V  I  L  L  I  Q  E  S  S  T  A  C  T  W  T  R  M  V  K  I  V  K  *  I :   F  Y  Q  Q  S  A  F  *  G  A  R  H  M  K  R  W  R  I  V  H  R  L  D  Y   : G  I  K  L  L  S  R  L  I  L  C  V  M  R :   H  W  N  V  *  *  R  I  T  C  S  L  V  M  K  :  R  E  P  C  S  H  V  C  S  L  V  L  K  M  G  G  F  L  H  S  I  L  V  *  *  R  S :   M  I  K  K  M  W  W  K  L  N  L  E  S  W  N  R  V  D  L  I  Q  S  F  R  T  N  L  F  C  V  R  L  N  P  T  L  I  F  *  P  A  K  L  S  I  I  I  N  A  V  N  I  R  N  A  L  N  *  H  L   : N  C  L  K  R  I  R  S  T  S  S  V  P  W  C  T  *  Q  Q  Q  W  S  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50243" stop="50136"/>
                    <exon start="48236" stop="48102"/>
                    <exon start="47996" stop="47923"/>
                    <exon start="46932" stop="46893"/>
                    <exon start="46617" stop="46572"/>
                    <exon start="45681" stop="45602"/>
                    <exon start="45338" stop="45157"/>
                    <exon start="44993" stop="44927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QALYLGRHYRRAFHLLNASQIVLRDLRFRYLAAKCLEELKEWDQCLLMLGDAKVDEHGNITDTREFNSMYLDKDGEDREINILSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCDEERTLLSCLQFGPEDGWLSSFYSCLIKKYDKENVVEAKFRELEQSGPNTKLSDKSVLCTLKSNSDLLACKAEYYHQCGEYQKCFELTSELLEKDPFHLKCTLVHLAAAMEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="51362" PGL_stop="52023"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51362" e_stop="52023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="51362" e_stop="52023" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51362" stop="52023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTTGAACAATTTAGGAATGCGAAAATGGAGAAAGTGAAAAAGGTATCATCTTTCAGTCTCTCTTCTCTACTTCGCCAGCAAAAAGATGCTAAAATCGCCCTTCAACTCTTCCTTAATCCTAATCCCAGCCATGGAAGCGACAAAACTACTAAACCTTTTCGTTATTCTCCACTCTGTTATGATCTCATCATCTGCAAGCTCGGCAGAGGTAAACTCTTTCAAGAAATGGAAAAAATCATCGATAAATTGAGACAGGACACTCGAGTTTCTCTCAACGAAGTTGTTTTCTGCAATGTTATTTCTTTTTATGGAAGAGCACATTTACCTGATAAGGCTCTTCATATGTTTAATGAAATACCCTCTTTTCGCTGCTATAGAAGTATAAAATCTGTTAATAGCTTGTTGAATGCACTTTTAGCTTGTAAAGAATACAGCAAGATTGGTGAAATGTTAAACAACTTTGAAAATTACGCAACCCCAGATGTTTGTACGTTTAATATATTGATGAATGCGTGTTGTTTGTGTGGTGATTTGGGTGGTGCACGGGAGGTGTTTGATGAAATGTGTGAGAGAGGAATTCAGCCAAATGTGGTGACTTTTGGGACGTTGATTAATGGGCTTTGTGTGAATCGAGAAATTAACGAGGCGTTTAGGATGA</gDNA_template>
            <first_frame> F  I  *  T  I  *  E  C  E  N  G  E  S  E  K  G  I  I  F  Q  S  L  F  S  T  S  P  A  K  R  C  *  N  R  P  S  T  L  P  *  S  *  S  Q  P  W  K  R  Q  N  Y  *  T  F  S  L  F  S  T  L  L  *  S  H  H  L  Q  A  R  Q  R  *  T  L  S  R  N  G  K  N  H  R  *  I  E  T  G  H  S  S  F  S  Q  R  S  C  F  L  Q  C  Y  F  F  L  W  K  S  T  F  T  *  *  G  S  S  Y  V  *  *  N  T  L  F  S  L  L  *  K  Y  K  I  C  *  *  L  V  E  C  T  F  S  L  *  R  I  Q  Q  D  W  *  N  V  K  Q  L  *  K  L  R  N  P  R  C  L  Y  V  *  Y  I  D  E  C  V  L  F  V  W  *  F  G  W  C  T  G  G  V  *  *  N  V  *  E  R  N  S  A  K  C  G  D  F  W  D  V  D  *  W  A  L  C  E  S  R  N  *  R  G  V  *  D   </first_frame>
            <second_frame>  S  F  E  Q  F  R  N  A  K  M  E  K  V  K  K  V  S  S  F  S  L  S  S  L  L  R  Q  Q  K  D  A  K  I  A  L  Q  L  F  L  N  P  N  P  S  H  G  S  D  K  T  T  K  P  F  R  Y  S  P  L  C  Y  D  L  I  I  C  K  L  G  R  G  K  L  F  Q  E  M  E  K  I  I  D  K  L  R  Q  D  T  R  V  S  L  N  E  V  V  F  C  N  V  I  S  F  Y  G  R  A  H  L  P  D  K  A  L  H  M  F  N  E  I  P  S  F  R  C  Y  R  S  I  K  S  V  N  S  L  L  N  A  L  L  A  C  K  E  Y  S  K  I  G  E  M  L  N  N  F  E  N  Y  A  T  P  D  V  C  T  F  N  I  L  M  N  A  C  C  L  C  G  D  L  G  G  A  R  E  V  F  D  E  M  C  E  R  G  I  Q  P  N  V  V  T  F  G  T  L  I  N  G  L  C  V  N  R  E  I  N  E  A  F  R  M  </second_frame>
            <third_frame>   H  L  N  N  L  G  M  R  K  W  R  K  *  K  R  Y  H  L  S  V  S  L  L  Y  F  A  S  K  K  M  L  K  S  P  F  N  S  S  L  I  L  I  P  A  M  E  A  T  K  L  L  N  L  F  V  I  L  H  S  V  M  I  S  S  S  A  S  S  A  E  V  N  S  F  K  K  W  K  K  S  S  I  N  *  D  R  T  L  E  F  L  S  T  K  L  F  S  A  M  L  F  L  F  M  E  E  H  I  Y  L  I  R  L  F  I  C  L  M  K  Y  P  L  F  A  A  I  E  V  *  N  L  L  I  A  C  *  M  H  F  *  L  V  K  N  T  A  R  L  V  K  C  *  T  T  L  K  I  T  Q  P  Q  M  F  V  R  L  I  Y  *  *  M  R  V  V  C  V  V  I  W  V  V  H  G  R  C  L  M  K  C  V  R  E  E  F  S  Q  M  W  *  L  L  G  R  *  L  M  G  F  V  *  I  E  K  L  T  R  R  L  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51363" stop="52022"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFEQFRNAKMEKVKKVSSFSLSSLLRQQKDAKIALQLFLNPNPSHGSDKTTKPFRYSPLCYDLIICKLGRGKLFQEMEKIIDKLRQDTRVSLNEVVFCNVISFYGRAHLPDKALHMFNEIPSFRCYRSIKSVNSLLNALLACKEYSKIGEMLNNFENYATPDVCTFNILMNACCLCGDLGGAREVFDEMCERGIQPNVVTFGTLINGLCVNREINEAFRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="66569" PGL_stop="63595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66569" e_stop="66559"/>
            <exon e_start="66449" e_stop="66384"/>
            <exon e_start="66186" e_stop="66127"/>
            <exon e_start="66013" e_stop="65972"/>
            <exon e_start="65874" e_stop="65825"/>
            <exon e_start="65640" e_stop="65273"/>
            <exon e_start="65132" e_stop="64937"/>
            <exon e_start="64856" e_stop="64713"/>
            <exon e_start="64383" e_stop="64265"/>
            <exon e_start="64086" e_stop="63876"/>
            <exon e_start="63790" e_stop="63595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.826" e_score="1.000"/>
          <exon-intron don_prob="0.288" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.896" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.959" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66569" e_stop="66559" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.826">
            <gDNA_intron_boundary i_start="66558" i_stop="66450" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66449" e_stop="66384" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.288" acc_prob="0.989">
            <gDNA_intron_boundary i_start="66383" i_stop="66187" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66186" e_stop="66127" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.896" acc_prob="0.933">
            <gDNA_intron_boundary i_start="66126" i_stop="66014" i_length="113"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="66013" e_stop="65972" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65971" i_stop="65875" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65874" e_stop="65825" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65824" i_stop="65641" i_length="184"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="65640" e_stop="65273" e_length="368"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65272" i_stop="65133" i_length="140"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65132" e_stop="64937" e_length="196"/>
          </exon>
          <intron i_serial="7" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64936" i_stop="64857" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64856" e_stop="64713" e_length="144"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.880">
            <gDNA_intron_boundary i_start="64712" i_stop="64384" i_length="329"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64383" e_stop="64265" e_length="119"/>
          </exon>
          <intron i_serial="9" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64264" i_stop="64087" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64086" e_stop="63876" e_length="211"/>
          </exon>
          <intron i_serial="10" don_prob="0.953" acc_prob="0.956">
            <gDNA_intron_boundary i_start="63875" i_stop="63791" i_length="85"/>
          </intron>
          <exon e_serial="11" e_score="0.980">
            <gDNA_exon_boundary e_start="63790" e_stop="63595" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66569" stop="66559"/>
              <exon start="66449" stop="66384"/>
              <exon start="66186" stop="66127"/>
              <exon start="66013" stop="65972"/>
              <exon start="65874" stop="65825"/>
              <exon start="65640" stop="65273"/>
              <exon start="65132" stop="64937"/>
              <exon start="64856" stop="64713"/>
              <exon start="64383" stop="64265"/>
              <exon start="64086" stop="63876"/>
              <exon start="63790" stop="63595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATAACAT : GTTTCTTGGTAACAATGCATTAAGCGGAGCAATTCCCAGCTGGATGTTTAGTAAAAGAGAGAACAT : GGATATGTCATACAACAATTTCACACAAATATCTACTCCAGTATGCGATTCCTCTACCTT : AAACTTAGCTGCTAGCTACTCCGATACAATGAACAACACCAC : GGATGCCTGGTGTTCTATGAAACCCCTCATTTGTCCCACAGACACGAAAT : ATACTTCACTATTCATAAACTGCGGAGGACCTAGAACTTCATTTGAGGGAAATAATTATGAGGCAGACACGACCAATAGAGGTCCGTCATATTTTTCTTCGCCCTCTGACAGATGGGCTTTCAGCAGTTCAGGAGTGTACGTGGGTCTTCAAGCTGCCAGTTATATTGCATCAAATACATTTTCACTGGATGTGTCCGGTCCTGACTTCTACAATACAGCACGCCTTGCCCCTAATTCCCTCAAATATTATGGGCTTTGCCTACAAGGAGGTAGCTACAGAGTGCGCCTTCACTTTGCTGAAATAATGTTTTCTAATGACTCAACATATAGCAGCCTTGGAAGGCGGATATTTGATGTAGCAATACAA : GGGAGAGTAGTTTTGAGGGATTTCAACATTATGGAGGAAGCTAACGGTGTTGGGAAAGTCATTACCAAGGACTTTCCTGATGTTACTGTTAGTAGCACTCTGGAGATTCATTTGTATTGGACCGGGAAGGGGACTAACGCTATTCCAGACAGAGGTGTATATGGACCACTGATTTCAGCTATCACAGTGACACCAA : ACTTTAGAGTTGACACTGGTAGTGGCTTACCTGTTGGAGCTGTTATCGGCATTGTACTCGCTTCAATTGTAGTGCTTCTGCTAGTTTTATTTGCTCTGTGGAAGAAAGGCATTTTTGGAGGGAAAAATAACCAAGAAGAATTAG : AACTCAGAGCCCTTGATTTACAAACAGGTCATTTTAGACTTAGACAAATTAAAGCTGCTACTAATAACTTTGATCCTGCCAACAAAATTGGTGAAGGAGGGTTTGGACCAGTTTACAAG : GGTGTACTCGCCGATGGTGCCATCATAGCTGTTAAGCAGCTGTCTTCCAAGTCAAAGCAAGGAAATCGTGAATTTGTCAATGAGATAGGCATGATTTCAGCTCTACAACACCCAAACCTTGTCAAGCTTTACGGTTGTTGCATAGAAGGGAACCAGTTATTAGTGATATACGAATACATGGAAAATAACTGTCTTGCTCGAGCTCTCTTTG : GCCGTGACGATCAGAGATTAAACATAGACTGGGCAACCAGAAAAAGGATATGCTCAGGAATAGCAAAAGGGTTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATCGTCCATAGAGATATAAAGTGTACGAATGTGCTTCTTGATAAGGATCTGAACGCGAAGATTTCAGATTTTGGATTGGCTAAATTAGATGA</gDNA_template>
            <first_frame> F  D  N  M :   F  L  G  N  N  A  L  S  G  A  I  P  S  W  M  F  S  K  R  E  N  M :   D  M  S  Y  N  N  F  T  Q  I  S  T  P  V  C  D  S  S  T  L :   N  L  A  A  S  Y  S  D  T  M  N  N  T  T :   D  A  W  C  S  M  K  P  L  I  C  P  T  D  T  K   : Y  T  S  L  F  I  N  C  G  G  P  R  T  S  F  E  G  N  N  Y  E  A  D  T  T  N  R  G  P  S  Y  F  S  S  P  S  D  R  W  A  F  S  S  S  G  V  Y  V  G  L  Q  A  A  S  Y  I  A  S  N  T  F  S  L  D  V  S  G  P  D  F  Y  N  T  A  R  L  A  P  N  S  L  K  Y  Y  G  L  C  L  Q  G  G  S  Y  R  V  R  L  H  F  A  E  I  M  F  S  N  D  S  T  Y  S  S  L  G  R  R  I  F  D  V  A  I  Q  :  G  R  V  V  L  R  D  F  N  I  M  E  E  A  N  G  V  G  K  V  I  T  K  D  F  P  D  V  T  V  S  S  T  L  E  I  H  L  Y  W  T  G  K  G  T  N  A  I  P  D  R  G  V  Y  G  P  L  I  S  A  I  T  V  T  P   : N  F  R  V  D  T  G  S  G  L  P  V  G  A  V  I  G  I  V  L  A  S  I  V  V  L  L  L  V  L  F  A  L  W  K  K  G  I  F  G  G  K  N  N  Q  E  E  L   : E  L  R  A  L  D  L  Q  T  G  H  F  R  L  R  Q  I  K  A  A  T  N  N  F  D  P  A  N  K  I  G  E  G  G  F  G  P  V  Y  K  :  G  V  L  A  D  G  A  I  I  A  V  K  Q  L  S  S  K  S  K  Q  G  N  R  E  F  V  N  E  I  G  M  I  S  A  L  Q  H  P  N  L  V  K  L  Y  G  C  C  I  E  G  N  Q  L  L  V  I  Y  E  Y  M  E  N  N  C  L  A  R  A  L  F   : G  R  D  D  Q  R  L  N  I  D  W  A  T  R  K  R  I  C  S  G  I  A  K  G  L  A  Y  L  H  E  E  S  R  L  K  I  V  H  R  D  I  K  C  T  N  V  L  L  D  K  D  L  N  A  K  I  S  D  F  G  L  A  K  L  D   </first_frame>
            <second_frame>  L  I  T   : C  F  L  V  T  M  H  *  A  E  Q  F  P  A  G  C  L  V  K  E  R  T   : W  I  C  H  T  T  I  S  H  K  Y  L  L  Q  Y  A  I  P  L  P   : *  T  *  L  L  A  T  P  I  Q  *  T  T  P   : R  M  P  G  V  L  *  N  P  S  F  V  P  Q  T  R  N  :  I  L  H  Y  S  *  T  A  E  D  L  E  L  H  L  R  E  I  I  M  R  Q  T  R  P  I  E  V  R  H  I  F  L  R  P  L  T  D  G  L  S  A  V  Q  E  C  T  W  V  F  K  L  P  V  I  L  H  Q  I  H  F  H  W  M  C  P  V  L  T  S  T  I  Q  H  A  L  P  L  I  P  S  N  I  M  G  F  A  Y  K  E  V  A  T  E  C  A  F  T  L  L  K  *  C  F  L  M  T  Q  H  I  A  A  L  E  G  G  Y  L  M  *  Q  Y  K :   G  E  *  F  *  G  I  S  T  L  W  R  K  L  T  V  L  G  K  S  L  P  R  T  F  L  M  L  L  L  V  A  L  W  R  F  I  C  I  G  P  G  R  G  L  T  L  F  Q  T  E  V  Y  M  D  H  *  F  Q  L  S  Q  *  H  Q  :  T  L  E  L  T  L  V  V  A  Y  L  L  E  L  L  S  A  L  Y  S  L  Q  L  *  C  F  C  *  F  Y  L  L  C  G  R  K  A  F  L  E  G  K  I  T  K  K  N  *  :  N  S  E  P  L  I  Y  K  Q  V  I  L  D  L  D  K  L  K  L  L  L  I  T  L  I  L  P  T  K  L  V  K  E  G  L  D  Q  F  T  R :   V  Y  S  P  M  V  P  S  *  L  L  S  S  C  L  P  S  Q  S  K  E  I  V  N  L  S  M  R  *  A  *  F  Q  L  Y  N  T  Q  T  L  S  S  F  T  V  V  A  *  K  G  T  S  Y  *  *  Y  T  N  T  W  K  I  T  V  L  L  E  L  S  L  :  A  V  T  I  R  D  *  T  *  T  G  Q  P  E  K  G  Y  A  Q  E  *  Q  K  G  *  L  T  F  M  K  N  Q  G  *  K  S  S  I  E  I  *  S  V  R  M  C  F  L  I  R  I  *  T  R  R  F  Q  I  L  D  W  L  N  *  M  </second_frame>
            <third_frame>   *  *  H  :  V  S  W  *  Q  C  I  K  R  S  N  S  Q  L  D  V  *  *  K  R  E  H  :  G  Y  V  I  Q  Q  F  H  T  N  I  Y  S  S  M  R  F  L  Y  L  :  K  L  S  C  *  L  L  R  Y  N  E  Q  H  H  :  G  C  L  V  F  Y  E  T  P  H  L  S  H  R  H  E  I :   Y  F  T  I  H  K  L  R  R  T  *  N  F  I  *  G  K  *  L  *  G  R  H  D  Q  *  R  S  V  I  F  F  F  A  L  *  Q  M  G  F  Q  Q  F  R  S  V  R  G  S  S  S  C  Q  L  Y  C  I  K  Y  I  F  T  G  C  V  R  S  *  L  L  Q  Y  S  T  P  C  P  *  F  P  Q  I  L  W  A  L  P  T  R  R  *  L  Q  S  A  P  S  L  C  *  N  N  V  F  *  *  L  N  I  *  Q  P  W  K  A  D  I  *  C  S  N  T   : R  E  S  S  F  E  G  F  Q  H  Y  G  G  S  *  R  C  W  E  S  H  Y  Q  G  L  S  *  C  Y  C  *  *  H  S  G  D  S  F  V  L  D  R  E  G  D  *  R  Y  S  R  Q  R  C  I  W  T  T  D  F  S  Y  H  S  D  T  K :   L  *  S  *  H  W  *  W  L  T  C  W  S  C  Y  R  H  C  T  R  F  N  C  S  A  S  A  S  F  I  C  S  V  E  E  R  H  F  W  R  E  K  *  P  R  R  I  R :   T  Q  S  P  *  F  T  N  R  S  F  *  T  *  T  N  *  S  C  Y  *  *  L  *  S  C  Q  Q  N  W  *  R  R  V  W  T  S  L  Q   : G  C  T  R  R  W  C  H  H  S  C  *  A  A  V  F  Q  V  K  A  R  K  S  *  I  C  Q  *  D  R  H  D  F  S  S  T  T  P  K  P  C  Q  A  L  R  L  L  H  R  R  E  P  V  I  S  D  I  R  I  H  G  K  *  L  S  C  S  S  S  L  W :   P  *  R  S  E  I  K  H  R  L  G  N  Q  K  K  D  M  L  R  N  S  K  R  V  S  L  P  S  *  R  I  K  V  E  N  R  P  *  R  Y  K  V  Y  E  C  A  S  *  *  G  S  E  R  E  D  F  R  F  W  I  G  *  I  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66569" stop="66559"/>
                    <exon start="66449" stop="66384"/>
                    <exon start="66186" stop="66127"/>
                    <exon start="66013" stop="65972"/>
                    <exon start="65874" stop="65825"/>
                    <exon start="65640" stop="65273"/>
                    <exon start="65132" stop="64937"/>
                    <exon start="64856" stop="64713"/>
                    <exon start="64383" stop="64265"/>
                    <exon start="64086" stop="63876"/>
                    <exon start="63790" stop="63597"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1461</number_coding_nucleotides>
                  <number_encoded_amino_acids>487</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDNMFLGNNALSGAIPSWMFSKRENMDMSYNNFTQISTPVCDSSTLNLAASYSDTMNNTTDAWCSMKPLICPTDTKYTSLFINCGGPRTSFEGNNYEADTTNRGPSYFSSPSDRWAFSSSGVYVGLQAASYIASNTFSLDVSGPDFYNTARLAPNSLKYYGLCLQGGSYRVRLHFAEIMFSNDSTYSSLGRRIFDVAIQGRVVLRDFNIMEEANGVGKVITKDFPDVTVSSTLEIHLYWTGKGTNAIPDRGVYGPLISAITVTPNFRVDTGSGLPVGAVIGIVLASIVVLLLVLFALWKKGIFGGKNNQEELELRALDLQTGHFRLRQIKAATNNFDPANKIGEGGFGPVYKGVLADGAIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLVIYEYMENNCLARALFGRDDQRLNIDWATRKRICSGIAKGLAYLHEESRLKIVHRDIKCTNVLLDKDLNAKISDFGLAKLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="92847" PGL_stop="77147"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92847" e_stop="92508"/>
            <exon e_start="77325" e_stop="77147"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.926"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="92847" e_stop="92508" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92507" i_stop="77326" i_length="15182"/>
          </intron>
          <exon e_serial="2" e_score="0.911">
            <gDNA_exon_boundary e_start="77325" e_stop="77147" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92847" stop="92508"/>
              <exon start="77325" stop="77147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATTAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGTGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGTACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCATCAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGGACCCCACGACGGACCGTC : GAGGGGGTCTCGTTCCAAAACACTTAGAATTCTGAATTTTGGATACTGAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGATGGGCCGTCACAGATCCTTTAGTGAAATTTAGTCTCTGAAATTTGTGACGGAAGCAGAAGGACGGACCGTCGCAG</gDNA_template>
            <first_frame> L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  I  R  K  L  R  L  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  *  E  R  Y  P  H  L  F  T  D  S  G  T  P  F  R  P  C  F  P  S  C  D  R  S  G  T  Y  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  H  Q  I  L  F  L  E  K  *  A  E  A  T  D  P  T  T  D  R   : R  G  G  L  V  P  K  H  L  E  F  *  I  L  D  T  E  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  A  *  W  A  V  T  D  P  L  V  K  F  S  L  *  N  L  *  R  K  Q  K  D  G  P  S  Q </first_frame>
            <second_frame>  L  M  R  I  C  L  M  R  R  N  L  L  P  F  *  I  E  K  F  A  S  *  D  *  G  R  L  H  P  S  K  F  N  G  R  I  D  P  L  K  K  P  L  G  R  R  R  Q  I  C  E  K  D  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  V  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  I  R  F  Y  F  W  K  N  R  L  R  R  R  T  P  R  R  T  V  :  E  G  V  S  F  Q  N  T  *  N  S  E  F  W  I  L  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  R  R  D  G  P  S  Q  I  L  *  *  N  L  V  S  E  I  C  D  G  S  R  R  T  D  R  R   </second_frame>
            <third_frame>   *  *  E  F  V  L  *  G  G  T  C  C  H  S  R  *  R  N  S  Q  V  E  I  K  G  D  C  I  H  Q  S  S  M  E  E  S  T  R  *  R  S  H  L  G  E  G  G  R  Y  V  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  L  *  S  F  G  D  V  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  S  D  F  I  S  G  K  I  G  *  G  D  G  P  H  D  G  P  S :   R  G  S  R  S  K  T  L  R  I  L  N  F  G  Y  *  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  V  M  G  R  H  R  S  F  S  E  I  *  S  L  K  F  V  T  E  A  E  G  R  T  V  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92774" stop="92508"/>
                    <exon start="77325" stop="77299"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRLHPSKFNGRIDPLKKPLGRRRQICEKDTHICLQIQVLLFALVFLLVIVRGRTMGKLVSIVTTCLVVLSIRFYFWKNRLRRRTPRRTVEGVSFQNT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91809" e_stop="91594"/>
            <exon e_start="91479" e_stop="91174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="91809" e_stop="91594" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91593" i_stop="91480" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.889">
            <gDNA_exon_boundary e_start="91479" e_stop="91174" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91809" stop="91594"/>
              <exon start="91479" stop="91174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAGGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAG : GATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCATGATAGTATATGAGGAGCGGAGTGTCACGTACCAACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATGTTAATATACTCAATCTAATGAATCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  :  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  E  D  R  S  V  T  F  R  H  H  D  S  I  *  G  A  E  C  H  V  P  T  R  E  E  *  R  *  *  N  L  E  R  C  *  Y  T  Q  S  N  E  S  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  R  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R :   I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  M  R  I  G  V  S  R  S  D  T  M  I  V  Y  E  E  R  S  V  T  Y  Q  H  E  R  N  K  D  N  E  I  L  K  D  V  N  I  L  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  D  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  G  R  L  D  E  R  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P   : G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  *  G  S  E  C  H  V  P  T  P  *  *  Y  M  R  S  G  V  S  R  T  N  T  R  G  I  K  I  M  K  S  *  K  M  L  I  Y  S  I  *  *  I  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91628" stop="91594"/>
                    <exon start="91479" stop="91296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMRIGVSRSDTRIEYGSGVTFRHQDRMRIGVSRSDTMIVYEERSVTYQHERNKDNEILKDVNILNLMNLIPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="93251" PGL_stop="93427"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93251" e_stop="93427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="93251" e_stop="93427" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93251" stop="93427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAAACATATCCTCCAACACTTGAATAGTTCTCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  N  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  R  E  T  Y  P  P  T  L  E  *  F  S  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  S  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0188O11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="105293" PGL_stop="106638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105293" e_stop="106638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="105293" e_stop="106638" e_length="1346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105293" stop="106004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105813" stop="106470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105882" stop="106638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106284" stop="106614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACATAGTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCAACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGTTTTTTCTCCCTCAACATTTCTAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTCGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTATTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAAGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTTCGCGGGGGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATAGAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACAGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCGAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGTATCGGCTTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTCGGAGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTTCTCCCCATAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAAAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAACCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATC</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  S  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  N  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  F  F  L  P  Q  H  F  *  Y  P  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  I  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  W  S  T  P  R  R  C  T  W  S  K  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  F  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  E  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  Q  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  I  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  K  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  F  L  P  I  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  K  T  R  I  G  M  S  S  N  S  Q  G  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  E  P  G  S  N  N  T  E  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  I  V  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  S  F  S  L  F  E  Y  T  N  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  R  S  L  C  S  T  T  L  E  V  G  L  L  T  L  L  T  S  R  G  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  *  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  R  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  R  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  V  S  A  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  N  S  E  K  A  K  S  Y  P  K  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  F  S  P  *  N  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  V  I  H  K  V  N  L  D  H  *  Q  M  K  K  I  H  K  K  M  W  N  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  *  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  Q  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  V  F  S  P  S  T  F  L  I  P  F  S  N  A  L  H  V  P  S  R  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  Y  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  L  E  H  P  K  E  M  H  L  V  *  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  G  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  R  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  E  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  Y  R  L  G  S  V  V  T  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  S  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  K  N  T  N  R  Y  V  K  *  F  T  R  *  I  *  T  I  S  K  *  R  R  Y  I  R  K  C  G  T  R  I  K  Q  Y  R  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106019" stop="106264"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIEKSISLSGGIPGRSAGNTSRNSQTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRIGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105557" stop="105796"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINEYDHKEIQIWLKNPVHQAHESSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105489" stop="105686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTLLKCSSCSFSLFEYTNISSMNTITKRSRYGLKIPFIKLMKAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="107306" PGL_stop="105865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107306" e_stop="107133"/>
            <exon e_start="106391" e_stop="105865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.902"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="107306" e_stop="107133" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107132" i_stop="106392" i_length="741"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="106391" e_stop="105865" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107306" stop="107133"/>
              <exon start="106391" stop="105865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTACTGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTTCGCCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGTATACGGCAAAATCCTTCCAAG : AAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCTCCGAATTTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAAGCCGATACGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTCGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCTGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTCTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCCCCCGCGAAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCTTAGACCAAGTGCATCTCCTTGGGGTGCTCCAGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  D  F  A  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  I  R  Q  N  P  S  K  :  K  W  L  T  L  M  *  F  W  V  *  L  G  F  L  R  I  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  S  R  Y  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  S  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  L  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  P  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  K  A  S  *  T  K  C  I  S  L  G  C  S  S  F  V  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  S  P  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  V  Y  G  K  I  L  P  R :   N  G  *  L  *  C  N  F  G  Y  D  L  A  F  S  E  F  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  A  D  T  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  R  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  L  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  P  R  E  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  R  L  L  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  G  F  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  Y  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  K  P  I  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  F  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  C  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  S  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  K  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  L  D  Q  V  H  L  L  G  V  L  Q  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107304" stop="107133"/>
                    <exon start="106391" stop="105904"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVGCRLLHMRLSFVHYPGMPPNCVSVHKSGFRRFVKGLRSELRISALQVAYTAKSFQEMVDFDVILGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSKPIRIISFLRAKKMVSKGCLAFFAHLKDDTTQVPSIESVSVVCEFLDVFPADLPGMPPDRDIDFSIDLEPGTRPISIPPYRMAPAKLRELKAQLQELLSKGFLDQVHLLGVLQFCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="107568" PGL_stop="108000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107568" e_stop="108000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="107568" e_stop="108000" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107568" stop="108000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTTAAGACTGGAGGTTTCAATTTCAAGAACTTAATGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTTAGACGTGGAAACGTGCCTATGTCCAATGAGACATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCGGGGGTAGGCTGGGGTGGCAATCCCTCATTTTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> P  F  K  T  G  G  F  N  F  K  N  L  M  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  T  S  I  R  *  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </first_frame>
            <second_frame>  P  L  R  L  E  V  S  I  S  R  T  *  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  L  D  V  E  T  C  L  C  P  M  R  H  P  Y  D  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  K  R  A  P  D  L  S  S  R  G  *  A  G  V  A  I  P  H  F  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   L  *  D  W  R  F  Q  F  Q  E  L  N  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  *  T  W  K  R  A  Y  V  Q  *  D  I  H  T  M  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  H  L  I  Y  H  L  G  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107723" stop="107998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISEHLIYHLGGRLGWQSLILHLFIFPILPFSYYFLSRWRSHCPSIRWARCSSSSPRGRPPTTSTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0188O11.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107802" stop="107999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIISGVGWGGNPSFCTCSFSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 114 chains have been computed
$ 
$ memory statistics:
$ 84080 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 3821 bytes was the average size of a spliced alignment
$ 24088 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1505 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 149 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 00:31:42
-->
